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Li W, Guo L, Ding XL, Ding Y, Ji LN, Xia XH, Wang K. High-Throughput Single-Molecule Surface-Enhanced Raman Spectroscopic Profiling of Single-Amino Acid Substitutions in Peptides by a Gold Plasmonic Nanopore. ACS NANO 2024; 18:19200-19207. [PMID: 38996344 DOI: 10.1021/acsnano.4c04775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/14/2024]
Abstract
Simultaneous detection and structural characterization of protein variants on a single platform are highly desirable but technically challenging. Herein, we present a single-molecule spectral system based on a gold plasmonic nanopore for analyzing two peptides and their single-point mutated variants. The gold plasmonic nanopore enabled the high-throughput acquisition of surface-enhanced Raman scattering (SERS) spectra at the single-molecule level by electrically driving analytes into hot spots. Furthermore, a statistical method based on Boolean operations was developed to extract prominent features from fluctuated single-molecule SERS spectra. The effects of the single-amino acid substitutions on both the intramolecular interactions and the peptide conformations were directly characterized by the nanopore system, and the results agreed with the predictions by AlphaFold2. This study highlights the mutual benefits of spectroscopy and nanopore technology, whereby the gold plasmonic nanopore offers a powerful tool for the structural analysis of single-molecule proteins.
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Affiliation(s)
- Wang Li
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Linru Guo
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Xin-Lei Ding
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Yanru Ding
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Li-Na Ji
- State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing 210023, China
| | - Xing-Hua Xia
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Kang Wang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
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2
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He C, Liu F, Wang J, Bi X, Pan J, Xue W, Qian X, Chen Z, Ye J. When surface-enhanced Raman spectroscopy meets complex biofluids: A new representation strategy for reliable and comprehensive characterization. Anal Chim Acta 2024; 1312:342767. [PMID: 38834270 DOI: 10.1016/j.aca.2024.342767] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2023] [Revised: 03/08/2024] [Accepted: 05/21/2024] [Indexed: 06/06/2024]
Abstract
BACKGROUND Surface-enhanced Raman spectroscopy (SERS) has gained increasing importance in molecular detection due to its high specificity and sensitivity. Complex biofluids (e.g., cell lysates and serums) typically contain large numbers of different bio-molecules with various concentrations, making it extremely challenging to be reliably and comprehensively characterized via conventional single SERS spectra due to uncontrollable electromagnetic hot spots and irregular molecular motions. The traditional approach of directly reading out the single SERS spectra or calculating the average of multiple spectra is less likely to take advantage of the full information of complex biofluid systems. RESULTS Herein, we propose to construct a spectral set with unordered multiple SERS spectra as a novel representation strategy to characterize full molecular information of complex biofluids. This new SERS representation not only contains details from each single spectra but captures the temporal/spatial distribution characteristics. To address the ordering-independent property of traditional chemometric methods (e.g., the Euclidean distance and the Pearson correlation coefficient), we introduce Wasserstein distance (WD) to quantitatively and comprehensively assess the quality of spectral sets on biofluids. WD performs its superiority for the quantitative assessment of the spectral sets. Additionally, WD benefits from its independence of the ordering of spectra in a spectral set, which is undesirable for traditional chemometric methods. With experiments on cell lysates and human serums, we successfully achieve the verification for the reproducibility between parallel samples, the uniformity at different positions in the same sample, the repeatability from multiple tests at one location of the same sample, and the cardinality effect of the spectral set. SERS spectral sets also manage to distinguish different classes of human serums and achieve higher accuracy than the traditional prostate-specific antigen in prostate cancer classification. SIGNIFICANCE The proposed SERS spectral set is a robust representation approach in accessing full information of biological samples compared to relying on a single or averaged spectra in terms of reproducibility, uniformity, repeatability, and cardinality effect. The application of WD further demonstrates the effectiveness and robustness of spectral sets in characterizing complex biofluid samples, which extends and consolidates the role of SERS.
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Affiliation(s)
- Chang He
- State Key Laboratory of Systems Medicine for Cancer, School of Biomedical Engineering, Shanghai Jiao Tong University, 200030, Shanghai, PR China
| | - Fugang Liu
- State Key Laboratory of Systems Medicine for Cancer, School of Biomedical Engineering, Shanghai Jiao Tong University, 200030, Shanghai, PR China
| | - Jiayi Wang
- Department of Urology, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, 200127, Shanghai PR China
| | - Xinyuan Bi
- State Key Laboratory of Systems Medicine for Cancer, School of Biomedical Engineering, Shanghai Jiao Tong University, 200030, Shanghai, PR China
| | - Jiahua Pan
- Department of Urology, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, 200127, Shanghai PR China
| | - Wei Xue
- Department of Urology, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, 200127, Shanghai PR China
| | - Xiaohua Qian
- State Key Laboratory of Systems Medicine for Cancer, School of Biomedical Engineering, Shanghai Jiao Tong University, 200030, Shanghai, PR China.
| | - Zhou Chen
- State Key Laboratory of Systems Medicine for Cancer, School of Biomedical Engineering, Shanghai Jiao Tong University, 200030, Shanghai, PR China.
| | - Jian Ye
- State Key Laboratory of Systems Medicine for Cancer, School of Biomedical Engineering, Shanghai Jiao Tong University, 200030, Shanghai, PR China; Department of Urology, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, 200127, Shanghai PR China; Institute of Medical Robotics, Shanghai Jiao Tong University, 200240, Shanghai, PR China; Shanghai Key Laboratory of Gynecologic Oncology, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, 200127, Shanghai, PR China.
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3
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Liu HL, Ahmed SA, Jiang QC, Shen Q, Zhan K, Wang K. Gold Nanotriangle-Assembled Nanoporous Structures for Electric Field-Assisted Surface-Enhanced Raman Scattering Detection of Adenosine Triphosphate. ACS Sens 2023; 8:1280-1286. [PMID: 36920780 DOI: 10.1021/acssensors.2c02759] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/16/2023]
Abstract
A reliable, rapid, cost-effective, and simple method for the detection of biomolecules would greatly promote the research of analytical detection of single molecules. A nanopore-based analytical technique is promising for detecting biomolecules. Conventional electrochemical nanopores cannot distinguish biomolecules precisely because of their fast translocation speed and limited electrochemical information. Therefore, it is highly desirable to develop electrochemical surface-enhanced Raman scattering (SERS) nanopores to obtain multidimensional information. Herein, we designed and fabricated gold nanotriangle (AuNT)-assembled porous structures at the tip of a glass capillary using dithiol adenosine triphosphate (ATP) aptamers as cross-linking molecules. The AuNTs exhibited an edge length of 57.3 ± 6.2 nm and thickness of about 15 nm. The gold nanoporous structure (GPS) showed a strong ion rectification even at a high concentration of electrolyte (2 M) and a high SERS activity. Based on these designed structures, SERS and electrochemistry techniques were combined to control the rapid movement of ATP to the vicinity of the GPS by an applied potential of +1 V, where ATP was concentrated by ATP aptamers and the molecular signals were amplified by SERS. As a result, the GPS successfully detected ATP at a concentration as low as 10-7 M.
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Affiliation(s)
- Hai-Ling Liu
- School of Chemistry and Chemical Engineering, Shaoxing University, Shaoxing 312000, China
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Saud Asif Ahmed
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Qiu-Cen Jiang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Qi Shen
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Kan Zhan
- College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou 310014, China
| | - Kang Wang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
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Liang L, Qin F, Wang S, Wu J, Li R, Wang Z, Ren M, Liu D, Wang D, Astruc D. Overview of the materials design and sensing strategies of nanopore devices. Coord Chem Rev 2023. [DOI: 10.1016/j.ccr.2022.214998] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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5
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Liu HL, Zhan K, Wang K, Xia XH. Recent advances in nanotechnologies combining surface-enhanced Raman scattering and nanopore. Trends Analyt Chem 2023. [DOI: 10.1016/j.trac.2023.116939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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6
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Ge K, Hu Y, Li G. Recent Progress on Solid Substrates for Surface-Enhanced Raman Spectroscopy Analysis. BIOSENSORS 2022; 12:941. [PMID: 36354450 PMCID: PMC9687977 DOI: 10.3390/bios12110941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 10/25/2022] [Accepted: 10/27/2022] [Indexed: 06/16/2023]
Abstract
Surface-enhanced Raman spectroscopy (SERS) is a powerful vibrational spectroscopy technique with distinguished features of non-destructivity, ultra-sensitivity, rapidity, and fingerprint characteristics for analysis and sensors. The SERS signals are mainly dependent on the engineering of high-quality substrates. Recently, solid SERS substrates with diverse forms have been attracting increasing attention due to their promising features, including dense hot spot, high stability, controllable morphology, and convenient portability. Here, we comprehensively review the recent advances made in the field of solid SERS substrates, including their common fabrication methods, basic categories, main features, and representative applications, respectively. Firstly, the main categories of solid SERS substrates, mainly including membrane substrate, self-assembled substrate, chip substrate, magnetic solid substrate, and other solid substrate, are introduced in detail, as well as corresponding construction strategies and main features. Secondly, the typical applications of solid SERS substrates in bio-analysis, food safety analysis, environment analysis, and other analyses are briefly reviewed. Finally, the challenges and perspectives of solid SERS substrates, including analytical performance improvement and largescale production level enhancement, are proposed.
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7
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Karimian R, Afshar V. Electrochemical determination of purine and pyrimidine bases using a 1,10-phenanthroline-Fe 3O 4 nanoparticles-graphene oxide-chitosan nanocomposite. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2022; 14:3790-3797. [PMID: 36124906 DOI: 10.1039/d2ay01069k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
A 1,10-phenanthroline-Fe3O4 nanoparticles-graphene oxide-chitosan nanocomposite (Phen-Fe3O4 NPs-GO-Chi) was fabricated and used to modify a glassy carbon (GC) electrode. The modified surface of the electrode was characterized by field emission-scanning electrochemical microscopy. Then, the prepared electrode was used as a sensor for simultaneous determination of purine and pyrimidine bases in DNA. The Phen-Fe3O4 NPs-GO-Chi composite modified electrode showed excellent response toward guanine (G), adenine (A), thymine (T) and cytosine (C). The sensor displayed higher effective surface, an appropriate peak-to-peak separation, and a larger peak current compared to the bare electrode. The evaluated detection limits of G, A, T, and C concentrations are 12, 4, 22, and 9 μM over the concentration range of 15-500, 15-400, 40-1000 and 40-1400 μM, respectively. In addition, the results show that the modified electrode is stable for 7 days and has good repeatability and interfering molecules and ions have no significant effect on peak current. The proposed method was successfully applied for the determination of purine and pyrimidine bases in a fish DNA sperm sample as a real sample.
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Affiliation(s)
- Ramin Karimian
- Chemical Injuries Research Center, Systems Biology and Poisonings Institute, Baqiyatallah University of Medical Sciences, Tehran, Iran.
| | - Vahid Afshar
- Chemical Injuries Research Center, Systems Biology and Poisonings Institute, Baqiyatallah University of Medical Sciences, Tehran, Iran.
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8
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Single-Molecule Surface-Enhanced Raman Spectroscopy. SENSORS 2022; 22:s22134889. [PMID: 35808385 PMCID: PMC9269420 DOI: 10.3390/s22134889] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Revised: 06/20/2022] [Accepted: 06/24/2022] [Indexed: 12/04/2022]
Abstract
Single-molecule surface-enhanced Raman spectroscopy (SM-SERS) has the potential to detect single molecules in a non-invasive, label-free manner with high-throughput. SM-SERS can detect chemical information of single molecules without statistical averaging and has wide application in chemical analysis, nanoelectronics, biochemical sensing, etc. Recently, a series of unprecedented advances have been realized in science and application by SM-SERS, which has attracted the interest of various fields. In this review, we first elucidate the key concepts of SM-SERS, including enhancement factor (EF), spectral fluctuation, and experimental evidence of single-molecule events. Next, we systematically discuss advanced implementations of SM-SERS, including substrates with ultra-high EF and reproducibility, strategies to improve the probability of molecules being localized in hotspots, and nonmetallic and hybrid substrates. Then, several examples for the application of SM-SERS are proposed, including catalysis, nanoelectronics, and sensing. Finally, we summarize the challenges and future of SM-SERS. We hope this literature review will inspire the interest of researchers in more fields.
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Chen S, Li Q, Tian D, Ke P, Yang X, Wu Q, Chen J, Hu C, Ji H. Assembly of long silver nanowires into highly aligned structure to achieve uniform "Hot Spots" for Surface-enhanced Raman scattering detection. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 273:121030. [PMID: 35189488 DOI: 10.1016/j.saa.2022.121030] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2021] [Revised: 02/08/2022] [Accepted: 02/10/2022] [Indexed: 06/14/2023]
Abstract
Silver nanowires (AgNWs) as a promising surface-enhanced Raman spectroscopy (SERS) substrate could be used in the analytical science due to its high sensitivity. However, it is difficult for the randomly-distributed silver nanowires to offer uniform "hot spots" to achieve the SERS signal reproducibility of small molecules detection. Herein, the evaporation-induced aggregation had been used to assemble long silver nanowires into highly aligned structure to achieve uniform "hot spots" for SERS detection. The normal glass slide with well-aligned silver nanowires could act as a high sensitivity and excellent reproducibility SERS substrate to provide a versatile platform for detecting analytes. Rhodamine 6G (R6G) is used to evaluate the sensitivity and reproducibility of these AgNWs SERS substrates. Even the low concentration of the R6G was 10-10 mol/L, the SERS features of R6G could be still observed clearly, and the uniform distribution of enhancement factor (EF) was higher than 0.8 × 104 accounting for about 75 % in the observed mapping area. Moreover, the relative standard deviation (RSD) of SERS intensity at the band of 610 cm-1 was used to estimate the signal reproducibility, and the calculated RSD value of aligned AgNWs substrate was about 3.6%, which was much higher than that of the randomly distributed AgNWs (26.8%) because of the highly aligned structure of silver nanowires with abundant and uniform inherent "hot spots". In addition, potential SERS detection of other small molecule, e.g. melamine was also demonstrated in the micromolar range.
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Affiliation(s)
- Shaoyun Chen
- Key Laboratory of Optoelectronic Chemical Materials and Devices, Ministry of Education, School of Optoelectronic Materials and Technology, Jianghan University, Wuhan 430056, China
| | - Qi Li
- Key Laboratory of Optoelectronic Chemical Materials and Devices, Ministry of Education, School of Optoelectronic Materials and Technology, Jianghan University, Wuhan 430056, China
| | - Du Tian
- Key Laboratory of Optoelectronic Chemical Materials and Devices, Ministry of Education, School of Optoelectronic Materials and Technology, Jianghan University, Wuhan 430056, China
| | - Pai Ke
- Key Laboratory of Optoelectronic Chemical Materials and Devices, Ministry of Education, School of Optoelectronic Materials and Technology, Jianghan University, Wuhan 430056, China
| | - Xinxin Yang
- Key Laboratory of Optoelectronic Chemical Materials and Devices, Ministry of Education, School of Optoelectronic Materials and Technology, Jianghan University, Wuhan 430056, China
| | - Qingyun Wu
- Key Laboratory of Optoelectronic Chemical Materials and Devices, Ministry of Education, School of Optoelectronic Materials and Technology, Jianghan University, Wuhan 430056, China
| | - Jian Chen
- Instrumental Analysis and Research Center, Sun Yat-sen University, Guangzhou 510275, China
| | - Chenglong Hu
- Key Laboratory of Optoelectronic Chemical Materials and Devices, Ministry of Education, School of Optoelectronic Materials and Technology, Jianghan University, Wuhan 430056, China.
| | - Hongbing Ji
- Fine Chemical Industry Research Institute, School of Chemistry, Sun Yat-sen University, Guangzhou 510275, China.
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10
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Zhao Y, Iarossi M, De Fazio AF, Huang JA, De Angelis F. Label-Free Optical Analysis of Biomolecules in Solid-State Nanopores: Toward Single-Molecule Protein Sequencing. ACS PHOTONICS 2022; 9:730-742. [PMID: 35308409 PMCID: PMC8931763 DOI: 10.1021/acsphotonics.1c01825] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Revised: 02/16/2022] [Accepted: 02/17/2022] [Indexed: 06/14/2023]
Abstract
Sequence identification of peptides and proteins is central to proteomics. Protein sequencing is mainly conducted by insensitive mass spectroscopy because proteins cannot be amplified, which hampers applications such as single-cell proteomics and precision medicine. The commercial success of portable nanopore sequencers for single DNA molecules has inspired extensive research and development of single-molecule techniques for protein sequencing. Among them, three challenges remain: (1) discrimination of the 20 amino acids as building blocks of proteins; (2) unfolding proteins; and (3) controlling the motion of proteins with nonuniformly charged sequences. In this context, the emergence of label-free optical analysis techniques for single amino acids and peptides by solid-state nanopores shows promise for addressing the first challenge. In this Perspective, we first discuss the current challenges of single-molecule fluorescence detection and nanopore resistive pulse sensing in a protein sequencing. Then, label-free optical methods are described to show how they address the single-amino-acid identification within single peptides. They include localized surface plasmon resonance detection and surface-enhanced Raman spectroscopy on plasmonic nanopores. Notably, we report new data to show the ability of plasmon-enhanced Raman scattering to record and discriminate the 20 amino acids at a single-molecule level. In addition, we discuss briefly the manipulation of molecule translocation and liquid flow in plasmonic nanopores for controlling molecule movement to allow high-resolution reading of protein sequences. We envision that a combination of Raman spectroscopy with plasmonic nanopores can succeed in single-molecule protein sequencing in a label-free way.
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Affiliation(s)
- Yingqi Zhao
- Istituto
Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy
| | - Marzia Iarossi
- Istituto
Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy
| | | | - Jian-An Huang
- Faculty
of Medicine, Faculty of Biochemistry and Molecular Medicine, University of Oulu, Aapistie 5 A, 90220 Oulu, Finland
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12
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Li W, Zhou J, Maccaferri N, Krahne R, Wang K, Garoli D. Enhanced Optical Spectroscopy for Multiplexed DNA and Protein-Sequencing with Plasmonic Nanopores: Challenges and Prospects. Anal Chem 2022; 94:503-514. [PMID: 34974704 PMCID: PMC8771637 DOI: 10.1021/acs.analchem.1c04459] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Wang Li
- State
Key Laboratory of Analytical Chemistry for Life Science School of
Chemistry and Chemical Engineering, Nanjing
University, Nanjing 210023, P. R. China
| | - Juan Zhou
- State
Key Laboratory of Analytical Chemistry for Life Science School of
Chemistry and Chemical Engineering, Nanjing
University, Nanjing 210023, P. R. China
| | - Nicolò Maccaferri
- Department
of Physics and Materials Science, University
of Luxembourg, L-1511 Luxembourg, Luxembourg
- Department
of Physics, Umeå University, Linnaeus väg 20, SE-90736 Umeå, Sweden
| | - Roman Krahne
- Istituto
Italiano di Tecnologia, Optoelectronics
Research Line, Morego
30, I-16163 Genova, Italy
| | - Kang Wang
- State
Key Laboratory of Analytical Chemistry for Life Science School of
Chemistry and Chemical Engineering, Nanjing
University, Nanjing 210023, P. R. China
| | - Denis Garoli
- Istituto
Italiano di Tecnologia, Optoelectronics
Research Line, Morego
30, I-16163 Genova, Italy
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Yang JM, Feng JD. Progress on optical measurements in single-molecule analysis with nanopores. CHINESE SCIENCE BULLETIN-CHINESE 2022. [DOI: 10.1360/tb-2021-1133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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14
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Competitive immunosensor for sensitive and optical anti-interference detection of imidacloprid by surface-enhanced Raman scattering. Food Chem 2021; 358:129898. [PMID: 33933961 DOI: 10.1016/j.foodchem.2021.129898] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2020] [Revised: 04/04/2021] [Accepted: 04/16/2021] [Indexed: 11/23/2022]
Abstract
The sensitive detection of pesticides in complex environment is important but still challenging in presence of organic-rich water sample and food matrix. Herein, we reported a nitrile-mediated SERS immunosensor for sensitive and optical anti-interference determination of imidacloprid. Raman tag contained CN bond could provide a sharp characteristic peak in the Raman-silent spectral window (1800 ~ 2800 cm-1), which could resist the optical noises from the fingerprint region (<1800 cm-1). Aucore-Agshell bimetallic nanocuboid (AuNR@Ag) connected with antigen and Raman tag was used as Raman probe, while Fe3O4 magnetic nanoparticle functionalized with anti-imidacloprid antibody was applied as signal enhancer. Owing to the specific recognition ability between antigen and antibody, the competitive system with imidacloprid was formed. Under the optimal condition, the linear relationship was developed in the range of 10-400 nM. Finally, the SERS immunosensor was successfully applied to determine imidacloprid in real samples with recoveries from 96.8% to 100.5%.
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Zhao B, Che C, Wang W, Li N, Cunningham BT. Single-step, wash-free digital immunoassay for rapid quantitative analysis of serological antibody against SARS-CoV-2 by photonic resonator absorption microscopy. Talanta 2021; 225:122004. [PMID: 33592744 PMCID: PMC7833826 DOI: 10.1016/j.talanta.2020.122004] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Revised: 12/09/2020] [Accepted: 12/10/2020] [Indexed: 02/06/2023]
Abstract
Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), the cause of Coronavirus Disease 2019 (COVID-19), poses extraordinary threats and complex challenges to global public health. Quantitative measurement of SARS-CoV-2 antibody titer plays an important role in understanding the patient-to-patient variability of immune response, assessing the efficacy of vaccines, and identifying donors for blood transfusion therapy. There is an urgent and ever-increasing demand for serological COVID-19 antibody tests that are highly sensitive, quantitative, rapid, simple, minimally invasive, and inexpensive. In this work, we developed a single-step, wash-free immunoassay for rapid and highly sensitive quantitative analysis of serological human IgG against SARS-CoV-2 which requires only a single droplet of serum. By simply incubating 4 μL human serum samples with antibody-functionalized gold nanoparticles, a photonic crystal optical biosensor coated with the recombinant spike protein serves as a sensing platform for the formation of sandwich immunocomplex through specific antigen-antibody interactions, upon which the detected IgG molecules can be counted with digital precision. We demonstrated a single-step 15-min assay capable of detecting as low as 100 pg mL-1 human COVID-19 IgG in serum samples. The calculated limit of detecting (LOD) and limit of quantification (LOQ) is 26.7 ± 7.7 and 32.0 ± 8.9 pg mL-1, respectively. This work represents the first utilization of the Activate Capture + Digital Counting (AC + DC)-based immunoassay for rapid and quantitative analysis of serological COVID-19 antibody, demonstrating a route toward point-of-care testing, using a portable detection instrument. On the basis of the sandwich immunoassay principle, the biosensing platform can be extended for the multiplexed detection of antigens, additional IgGs, cytokines, and other protein biomarkers.
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Affiliation(s)
- Bin Zhao
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Nick Holonyak, Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Congnyu Che
- Nick Holonyak, Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Weijing Wang
- Nick Holonyak, Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Nantao Li
- Nick Holonyak, Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Brian T Cunningham
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Nick Holonyak, Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA; Cancer Center at Illinois, Urbana, IL, 61801, USA.
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Eremina OE, Sergeeva EA, Ferree MV, Shekhovtsova TN, Goodilin EA, Veselova IA. Dual-Purpose SERS Sensor for Selective Determination of Polycyclic Aromatic Compounds via Electron Donor-Acceptor Traps. ACS Sens 2021; 6:1057-1066. [PMID: 33529008 DOI: 10.1021/acssensors.0c02294] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Toxic, carcinogenic, and mutagenic properties of polycyclic aromatic hydrocarbons (PAHs) and environmental pollution caused by polycyclic aromatic sulfur heterocycles (PASHs) postulate the importance of their selective and sensitive determination in environmental and oil fuel samples. Surface-enhanced Raman spectroscopy (SERS) opens up an avenue toward multiplex analysis of complex mixtures, however not every molecule gives high enhancement factors and, thus, cannot be reliably detected via SERS. However, the sensitivity can be drastically increased by additional resonant enhancement as a result of the analyte absorption band overlapping with the surface plasmon band of nanoparticles (NPs) and the laser excitation wavelength. Using this idea, we developed a dual-purpose SERS sensor based on trapping the target PAHs and PASHs into colored charge-transfer complexes (CTCs) with selected organic π-acceptor molecules on the surface of AgNPs. Studying, computing, and then comparing stability constants of the formed CTC served as a powerful explanation and prediction tool for a wise choice of π-acceptor indicator systems for the further silver surface modification. Moreover, we show that CTC formation can be effectively utilized for increasing both selectivity and sensitivity by simple liquid-liquid extraction prior to SERS measurements. For the first time, the dual-purpose SERS sensor allowed determination of two different classes of polycyclic aromatic fuel components down to 10 nM concentration, lower than that restricted by the ASTM regulation, and demonstrated multi-purpose capabilities of the developed approach.
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Affiliation(s)
- Olga E. Eremina
- Chemistry Department, Lomonosov Moscow State University, 1 Lenin Hills, Moscow 119991, Russia
| | - Elena A. Sergeeva
- Chemistry Department, Lomonosov Moscow State University, 1 Lenin Hills, Moscow 119991, Russia
| | - Mariia V. Ferree
- Chemistry Department, Lomonosov Moscow State University, 1 Lenin Hills, Moscow 119991, Russia
| | - Tatyana N. Shekhovtsova
- Chemistry Department, Lomonosov Moscow State University, 1 Lenin Hills, Moscow 119991, Russia
| | - Eugene A. Goodilin
- Chemistry Department, Lomonosov Moscow State University, 1 Lenin Hills, Moscow 119991, Russia
- Faculty of Materials Science, Lomonosov Moscow State University, 1 Lenin Hills, Moscow 119991, Russia
| | - Irina A. Veselova
- Chemistry Department, Lomonosov Moscow State University, 1 Lenin Hills, Moscow 119991, Russia
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17
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Yang Y, Li Y, Zhai W, Li X, Li D, Lin H, Han S. Electrokinetic Preseparation and Molecularly Imprinted Trapping for Highly Selective SERS Detection of Charged Phthalate Plasticizers. Anal Chem 2021; 93:946-955. [PMID: 33206502 DOI: 10.1021/acs.analchem.0c03652] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Nonspecific binding and weak spectral discernment are the main challenges for surface-enhanced Raman scattering (SERS) detection, especially in real sample analysis. Herein, molecularly imprinted polymer (MIP)-based core-shell AuNP@polydopamine (AuNP@PDA-MIP) nanoparticles (NPs) are designed and immobilized on an electrochemically reduced MoS2-modified screen-printed electrode (SPE). This portable electrochemical-Raman interface offers the dual functions of electrokinetic preseparation (EP) and MIP trapping of charged molecules so that a reliable SERS recognition with molecular selectivity and high sensitivity can be achieved. Core-shell AuNP@PDA-MIP NPs can be controllably synthesized, possess predesigned specific recognition, and provide "hot spots" at the junction of NPs. The introduction of an electric field enables the autonomous exclusion and separation of similarly charged molecules as well as attraction and concentration of the oppositely charged molecules by electrostatic attraction. Subsequently, the specific MIP recognition cavities allow selective adsorption of targets on the interface without the interference of analogues. Owing to the distinctive design of the multiple coupling separation, trapping, and enrichment strategies, the MIP-based SERS-active interface can be used for label-free detection of charged molecules in real samples without pretreatment. As a proof-of-concept study, label-free SERS detection of charged phthalate plasticizers (PAEs) was demonstrated with a detection limit as low as 2.7 × 10-12 M for dimethyl phthalate (DMP) and 2.3 × 10-11 M for di(2-ethylhexyl) phthalate (DEHP). This sensing strategy for in situ SERS analysis of charged pollutants or toxins holds vast promises for a wide range of in-field applications.
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Affiliation(s)
- Yuanyuan Yang
- School of Chemical and Environmental Engineering, Shanghai Institute of Technology, No. 100 Haiquan Road, Shanghai 201418, People's Republic of China
| | - Yuanting Li
- School of Chemical and Environmental Engineering, Shanghai Institute of Technology, No. 100 Haiquan Road, Shanghai 201418, People's Republic of China
| | - Wenlei Zhai
- Beijing Research Center for Agricultural Standards and Testing, Beijing Academy of Agricultural and Forestry Science, No. 9 Middle Road of Shuguanghuayuan, Haidian District, Beijing 100097, People's Republic of China
| | - Xuejian Li
- School of Chemical and Environmental Engineering, Shanghai Institute of Technology, No. 100 Haiquan Road, Shanghai 201418, People's Republic of China
| | - Dan Li
- School of Chemical and Environmental Engineering, Shanghai Institute of Technology, No. 100 Haiquan Road, Shanghai 201418, People's Republic of China
| | - Hualin Lin
- School of Chemical and Environmental Engineering, Shanghai Institute of Technology, No. 100 Haiquan Road, Shanghai 201418, People's Republic of China
| | - Sheng Han
- School of Chemical and Environmental Engineering, Shanghai Institute of Technology, No. 100 Haiquan Road, Shanghai 201418, People's Republic of China
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18
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Shepherd BA, Tanjil MRE, Jeong Y, Baloğlu B, Liao J, Wang MC. Ångström- and Nano-scale Pore-Based Nucleic Acid Sequencing of Current and Emergent Pathogens. MRS ADVANCES 2020; 5:2889-2906. [PMID: 33437534 PMCID: PMC7790041 DOI: 10.1557/adv.2020.402] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
State-of-the-art nanopore sequencing enables rapid and real-time identification of novel pathogens, which has wide application in various research areas and is an emerging diagnostic tool for infectious diseases including COVID-19. Nanopore translocation enables de novo sequencing with long reads (> 10 kb) of novel genomes, which has advantages over existing short-read sequencing technologies. Biological nanopore sequencing has already achieved success as a technology platform but it is sensitive to empirical factors such as pH and temperature. Alternatively, ångström- and nano-scale solid-state nanopores, especially those based on two-dimensional (2D) membranes, are promising next-generation technologies as they can surpass biological nanopores in the variety of membrane materials, ease of defining pore morphology, higher nucleotide detection sensitivity, and facilitation of novel and hybrid sequencing modalities. Since the discovery of graphene, atomically-thin 2D materials have shown immense potential for the fabrication of nanopores with well-defined geometry, rendering them viable candidates for nanopore sequencing membranes. Here, we review recent progress and future development trends of 2D materials and their ångström- and nano-scale pore-based nucleic acid (NA) sequencing including fabrication techniques and current and emerging sequencing modalities. In addition, we discuss the current challenges of translocation-based nanopore sequencing and provide an outlook on promising future research directions.
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Affiliation(s)
- Britney A. Shepherd
- Department of Medical Engineering, University of South Florida, 4202 E. Fowler Avenue, Tampa, Florida 33620 USA
| | - Md Rubayat-E Tanjil
- Department of Mechanical Engineering, University of South Florida, 4202 E. Fowler Avenue, Tampa, Florida 33620 USA
| | - Yunjo Jeong
- Department of Mechanical Engineering, University of South Florida, 4202 E. Fowler Avenue, Tampa, Florida 33620 USA
| | - Bilgenur Baloğlu
- Centre for Biodiversity Genomics, University of Guelph, 50 Stone Road East, Guelph, Ontario N1G2W1 Canada
| | - Jingqiu Liao
- Department of Systems Biology, Columbia University, 1130 St. Nicholas Avenue, New York, New York 10032 USA
| | - Michael Cai Wang
- Department of Medical Engineering, University of South Florida, 4202 E. Fowler Avenue, Tampa, Florida 33620 USA
- Department of Mechanical Engineering, University of South Florida, 4202 E. Fowler Avenue, Tampa, Florida 33620 USA
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Liu S, Yang R, Lin X, Su B. Gated thermoelectric sensation by nanochannels grafted with thermally responsive polymers. Chem Commun (Camb) 2020; 56:14291-14294. [PMID: 33130832 DOI: 10.1039/d0cc06734b] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
We report that conical PET nanochannels grafted with thermally responsive polymers can mimic the thermosensation of protein channels in living organisms, showing an adjustable gated potential rather than current response to an ambient temperature stimulus, which is more consistent with real biochannels.
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Affiliation(s)
- Shanshan Liu
- Institute of Analytical Chemistry, Department of Chemistry, Zhejiang University, Hangzhou 310058, China.
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