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For: Tang RS, Draper DE. Bulge loops used to measure the helical twist of RNA in solution. Biochemistry 1990;29:5232-7. [PMID: 1696495 DOI: 10.1021/bi00474a003] [Citation(s) in RCA: 58] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Number Cited by Other Article(s)
1
Merriman DK, Yuan J, Shi H, Majumdar A, Herschlag D, Al-Hashimi HM. Increasing the length of poly-pyrimidine bulges broadens RNA conformational ensembles with minimal impact on stacking energetics. RNA (NEW YORK, N.Y.) 2018;24:1363-1376. [PMID: 30012568 PMCID: PMC6140463 DOI: 10.1261/rna.066258.118] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2018] [Accepted: 07/05/2018] [Indexed: 05/03/2023]
2
Graph-based sampling for approximating global helical topologies of RNA. Proc Natl Acad Sci U S A 2014;111:4079-84. [PMID: 24591615 DOI: 10.1073/pnas.1318893111] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
3
Patel S, Blose JM, Sokoloski JE, Pollack L, Bevilacqua PC. Specificity of the double-stranded RNA-binding domain from the RNA-activated protein kinase PKR for double-stranded RNA: insights from thermodynamics and small-angle X-ray scattering. Biochemistry 2012;51:9312-22. [PMID: 23140277 DOI: 10.1021/bi300935p] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
4
Eschbach SH, St-Pierre P, Penedo JC, Lafontaine DA. Folding of the SAM-I riboswitch: a tale with a twist. RNA Biol 2012;9:535-41. [PMID: 22336759 DOI: 10.4161/rna.19648] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
5
Mustoe AM, Bailor MH, Teixeira RM, Brooks CL, Al-Hashimi HM. New insights into the fundamental role of topological constraints as a determinant of two-way junction conformation. Nucleic Acids Res 2011;40:892-904. [PMID: 21937512 PMCID: PMC3258142 DOI: 10.1093/nar/gkr751] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]  Open
6
Heinicke LA, Nallagatla SR, Hull CM, Bevilacqua PC. RNA helical imperfections regulate activation of the protein kinase PKR: effects of bulge position, size, and geometry. RNA (NEW YORK, N.Y.) 2011;17:957-966. [PMID: 21460237 PMCID: PMC3078744 DOI: 10.1261/rna.2636911] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2011] [Accepted: 02/24/2011] [Indexed: 05/30/2023]
7
Comparative gel electrophoresis analysis of helical junctions in RNA. Methods Enzymol 2009;469:143-57. [PMID: 20946788 DOI: 10.1016/s0076-6879(09)69007-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/24/2023]
8
Keene FR, Smith JA, Collins JG. Metal complexes as structure-selective binding agents for nucleic acids. Coord Chem Rev 2009. [DOI: 10.1016/j.ccr.2009.01.004] [Citation(s) in RCA: 167] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
9
Analysis of branched nucleic acid structure using comparative gel electrophoresis. Q Rev Biophys 2008;41:1-39. [PMID: 18755052 DOI: 10.1017/s0033583508004678] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
10
Bailor MH, Musselman C, Hansen AL, Gulati K, Patel DJ, Al-Hashimi HM. Characterizing the relative orientation and dynamics of RNA A-form helices using NMR residual dipolar couplings. Nat Protoc 2007;2:1536-46. [PMID: 17571061 PMCID: PMC4707013 DOI: 10.1038/nprot.2007.221] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
11
Blouin S, Lafontaine DA. A loop loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control. RNA (NEW YORK, N.Y.) 2007;13:1256-67. [PMID: 17585050 PMCID: PMC1924893 DOI: 10.1261/rna.560307] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
12
Brody JR, Kern SE. History and principles of conductive media for standard DNA electrophoresis. Anal Biochem 2005;333:1-13. [PMID: 15351274 DOI: 10.1016/j.ab.2004.05.054] [Citation(s) in RCA: 71] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
13
Goody TA, Melcher SE, Norman DG, Lilley DMJ. The kink-turn motif in RNA is dimorphic, and metal ion-dependent. RNA (NEW YORK, N.Y.) 2004;10:254-64. [PMID: 14730024 PMCID: PMC1370537 DOI: 10.1261/rna.5176604] [Citation(s) in RCA: 110] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2003] [Accepted: 10/03/2003] [Indexed: 05/19/2023]
14
Liang C, Liu C. Dynamics of RNA with A6 bulge loop. ACTA ACUST UNITED AC 2002. [DOI: 10.1007/bf02907570] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
15
Lafontaine DA, Wilson TJ, Norman DG, Lilley DM. The A730 loop is an important component of the active site of the VS ribozyme. J Mol Biol 2001;312:663-74. [PMID: 11575922 DOI: 10.1006/jmbi.2001.4996] [Citation(s) in RCA: 64] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
16
Feig M, Zacharias M, Pettitt BM. Conformations of an adenine bulge in a DNA octamer and its influence on DNA structure from molecular dynamics simulations. Biophys J 2001;81:352-70. [PMID: 11423420 PMCID: PMC1301517 DOI: 10.1016/s0006-3495(01)75705-0] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]  Open
17
Yoo JS, Cheong HK, Lee BJ, Kim YB, Cheong C. Solution structure of the SL1 RNA of the M1 double-stranded RNA virus of Saccharomyces cerevisiae. Biophys J 2001;80:1957-66. [PMID: 11259308 PMCID: PMC1301384 DOI: 10.1016/s0006-3495(01)76165-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
18
Lilley DMJ. Folding of branched RNA species. Biopolymers 2001;48:101-112. [PMID: 11180044 DOI: 10.1002/(sici)1097-0282(1998)48:2<101::aid-bip2>3.0.co;2-7] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
19
Zheng X, Bevilacqua PC. Efficient construction of long DNA duplexes with internal non-Watson-Crick motifs and modifications. Nucleic Acids Res 2001;29:E6. [PMID: 11139636 PMCID: PMC29687 DOI: 10.1093/nar/29.2.e6] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
20
Zheng X, Bevilacqua PC. Straightening of bulged RNA by the double-stranded RNA-binding domain from the protein kinase PKR. Proc Natl Acad Sci U S A 2000;97:14162-7. [PMID: 11114159 PMCID: PMC18888 DOI: 10.1073/pnas.011355798] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]  Open
21
Stühmeier F, Hillisch A, Clegg RM, Diekman S. Fluorescence energy transfer analysis of DNA structures containing several bulges and their interaction with CAP. J Mol Biol 2000;302:1081-100. [PMID: 11183776 DOI: 10.1006/jmbi.2000.4089] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
22
Grainger RJ, Norman DG, Lilley DM. Binding of U1A protein to the 3' untranslated region of its pre-mRNA. J Mol Biol 1999;288:585-94. [PMID: 10329165 DOI: 10.1006/jmbi.1999.2717] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
23
Seeman NC. DNA nanotechnology: novel DNA constructions. ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE 1998;27:225-48. [PMID: 9646868 DOI: 10.1146/annurev.biophys.27.1.225] [Citation(s) in RCA: 230] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
24
Friederich MW, Vacano E, Hagerman PJ. Global flexibility of tertiary structure in RNA: yeast tRNAPhe as a model system. Proc Natl Acad Sci U S A 1998;95:3572-7. [PMID: 9520407 PMCID: PMC19877 DOI: 10.1073/pnas.95.7.3572] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
25
Grainger RJ, Murchie AI, Norman DG, Lilley DM. Severe axial bending of RNA induced by the U1A binding element present in the 3' untranslated region of the U1A mRNA. J Mol Biol 1997;273:84-92. [PMID: 9367748 DOI: 10.1006/jmbi.1997.1289] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
26
Hagerman PJ. Flexibility of RNA. ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE 1997;26:139-56. [PMID: 9241416 DOI: 10.1146/annurev.biophys.26.1.139] [Citation(s) in RCA: 92] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
27
Graveley BR, Fleming ES, Gilmartin GM. RNA structure is a critical determinant of poly(A) site recognition by cleavage and polyadenylation specificity factor. Mol Cell Biol 1996;16:4942-51. [PMID: 8756653 PMCID: PMC231496 DOI: 10.1128/mcb.16.9.4942] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
28
Portmann S, Grimm S, Workman C, Usman N, Egli M. Crystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage. CHEMISTRY & BIOLOGY 1996;3:173-84. [PMID: 8807843 DOI: 10.1016/s1074-5521(96)90260-4] [Citation(s) in RCA: 62] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
29
Zagórowska I, Adamiak RW. 2-Aminopurine labelled RNA bulge loops. Synthesis and thermodynamics. Biochimie 1996;78:123-30. [PMID: 8818221 DOI: 10.1016/0300-9084(96)82644-7] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
30
Lilley DM. Kinking of DNA and RNA by base bulges. Proc Natl Acad Sci U S A 1995;92:7140-2. [PMID: 7543675 PMCID: PMC41294 DOI: 10.1073/pnas.92.16.7140] [Citation(s) in RCA: 93] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]  Open
31
Marino JP, Gregorian RS, Csankovszki G, Crothers DM. Bent helix formation between RNA hairpins with complementary loops. Science 1995;268:1448-54. [PMID: 7539549 DOI: 10.1126/science.7539549] [Citation(s) in RCA: 100] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
32
Friederich MW, Gast FU, Vacano E, Hagerman PJ. Determination of the angle between the anticodon and aminoacyl acceptor stems of yeast phenylalanyl tRNA in solution. Proc Natl Acad Sci U S A 1995;92:4803-7. [PMID: 7761403 PMCID: PMC41795 DOI: 10.1073/pnas.92.11.4803] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]  Open
33
Gast FU, Sänger HL. Gel dependence of electrophoretic mobilities of double-stranded and viroid RNA and estimation of the contour length of a viroid by gel electrophoresis. Electrophoresis 1994;15:1493-8. [PMID: 7720685 DOI: 10.1002/elps.11501501213] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
34
Gohlke C, Murchie AI, Lilley DM, Clegg RM. Kinking of DNA and RNA helices by bulged nucleotides observed by fluorescence resonance energy transfer. Proc Natl Acad Sci U S A 1994;91:11660-4. [PMID: 7526401 PMCID: PMC45291 DOI: 10.1073/pnas.91.24.11660] [Citation(s) in RCA: 144] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]  Open
35
Murphy FL, Wang YH, Griffith JD, Cech TR. Coaxially stacked RNA helices in the catalytic center of the Tetrahymena ribozyme. Science 1994;265:1709-12. [PMID: 8085157 DOI: 10.1126/science.8085157] [Citation(s) in RCA: 45] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
36
Tang RS, Draper DE. Bend and helical twist associated with a symmetric internal loop from 5S ribosomal RNA. Biochemistry 1994;33:10089-93. [PMID: 8060977 DOI: 10.1021/bi00199a036] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
37
Malhotra A, Tan RK, Harvey SC. Modeling large RNAs and ribonucleoprotein particles using molecular mechanics techniques. Biophys J 1994;66:1777-95. [PMID: 7521223 PMCID: PMC1275904 DOI: 10.1016/s0006-3495(94)80972-5] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]  Open
38
Witherell GW, Wimmer E. Encephalomyocarditis virus internal ribosomal entry site RNA-protein interactions. J Virol 1994;68:3183-92. [PMID: 8151781 PMCID: PMC236809 DOI: 10.1128/jvi.68.5.3183-3192.1994] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]  Open
39
Tang RS, Draper DE. On the use of phasing experiments to measure helical repeat and bulge loop-associated twist in RNA. Nucleic Acids Res 1994;22:835-41. [PMID: 7511222 PMCID: PMC307890 DOI: 10.1093/nar/22.5.835] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]  Open
40
Welch JB, Duckett DR, Lilley DM. Structures of bulged three-way DNA junctions. Nucleic Acids Res 1993;21:4548-55. [PMID: 8233789 PMCID: PMC311188 DOI: 10.1093/nar/21.19.4548] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]  Open
41
Weeks KM, Crothers DM. RNA targeting by the HIV-1 Tat protein. ACTA ACUST UNITED AC 1993. [DOI: 10.1007/bf02171664] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
42
Lilley DM, Clegg RM. The structure of branched DNA species. Q Rev Biophys 1993;26:131-75. [PMID: 8284349 DOI: 10.1017/s0033583500004054] [Citation(s) in RCA: 62] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
43
Duckett DR, Murchie AI, Bhattacharyya A, Clegg RM, Diekmann S, von Kitzing E, Lilley DM. The structure of DNA junctions and their interaction with enzymes. EUROPEAN JOURNAL OF BIOCHEMISTRY 1993;211:285-95. [PMID: 8425539 DOI: 10.1111/j.1432-1033.1992.tb17049.x] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
44
Niederweis M, Lederer T, Hillen W. An accurate method for determining the helical repeat of DNA in solution reveals differences to the crystal structures of two B-DNA decamers. J Mol Biol 1992;228:322-6. [PMID: 1453442 DOI: 10.1016/0022-2836(92)90820-a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
45
Bettany A, Eisenstein R, Munro H. Mutagenesis of the iron-regulatory element further defines a role for RNA secondary structure in the regulation of ferritin and transferrin receptor expression. J Biol Chem 1992. [DOI: 10.1016/s0021-9258(18)42035-2] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]  Open
46
Riordan FA, Bhattacharyya A, McAteer S, Lilley DM. Kinking of RNA helices by bulged bases, and the structure of the human immunodeficiency virus transactivator response element. J Mol Biol 1992;226:305-10. [PMID: 1640450 DOI: 10.1016/0022-2836(92)90947-i] [Citation(s) in RCA: 58] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
47
Turner DH. Bulges in nucleic acids. Curr Opin Struct Biol 1992. [DOI: 10.1016/0959-440x(92)90222-s] [Citation(s) in RCA: 52] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
48
Rosen MA, Shapiro L, Patel DJ. Solution structure of a trinucleotide A-T-A bulge loop within a DNA duplex. Biochemistry 1992;31:4015-26. [PMID: 1314655 DOI: 10.1021/bi00131a017] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
49
Rosen MA, Live D, Patel DJ. Comparative NMR study of A(n)-bulge loops in DNA duplexes: intrahelical stacking of A, A-A, and A-A-A bulge loops. Biochemistry 1992;31:4004-14. [PMID: 1314654 DOI: 10.1021/bi00131a016] [Citation(s) in RCA: 57] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
50
Sumner-Smith M, Roy S, Barnett R, Reid LS, Kuperman R, Delling U, Sonenberg N. Critical chemical features in trans-acting-responsive RNA are required for interaction with human immunodeficiency virus type 1 Tat protein. J Virol 1991;65:5196-202. [PMID: 1895380 PMCID: PMC248997 DOI: 10.1128/jvi.65.10.5196-5202.1991] [Citation(s) in RCA: 71] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
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