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For: Kovatcheva A, Golbraikh A, Oloff S, Xiao YD, Zheng W, Wolschann P, Buchbauer G, Tropsha A. Combinatorial QSAR of Ambergris Fragrance Compounds. ACTA ACUST UNITED AC 2004;44:582-95. [PMID: 15032539 DOI: 10.1021/ci034203t] [Citation(s) in RCA: 83] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Number Cited by Other Article(s)
1
Wang X, Li F, Chen J, Teng Y, Ji C, Wu H. Critical features identification for chemical chronic toxicity based on mechanistic forecast models. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022;307:119584. [PMID: 35688391 DOI: 10.1016/j.envpol.2022.119584] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2022] [Revised: 05/03/2022] [Accepted: 06/03/2022] [Indexed: 06/15/2023]
2
Mamada H, Nomura Y, Uesawa Y. Novel QSAR Approach for a Regression Model of Clearance That Combines DeepSnap-Deep Learning and Conventional Machine Learning. ACS OMEGA 2022;7:17055-17062. [PMID: 35647436 PMCID: PMC9134387 DOI: 10.1021/acsomega.2c00261] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Accepted: 04/29/2022] [Indexed: 05/03/2023]
3
Ajjarapu SM, Tiwari A, Ramteke PW, Singh DB, Kumar S. Ligand-based drug designing. Bioinformatics 2022. [DOI: 10.1016/b978-0-323-89775-4.00018-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]  Open
4
Mamada H, Nomura Y, Uesawa Y. Prediction Model of Clearance by a Novel Quantitative Structure-Activity Relationship Approach, Combination DeepSnap-Deep Learning and Conventional Machine Learning. ACS OMEGA 2021;6:23570-23577. [PMID: 34549154 PMCID: PMC8444299 DOI: 10.1021/acsomega.1c03689] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Accepted: 08/23/2021] [Indexed: 05/19/2023]
5
Titov IY, Stroylov VS, Rusina P, Svitanko IV. Preliminary modelling as the first stage of targeted organic synthesis. RUSSIAN CHEMICAL REVIEWS 2021. [DOI: 10.1070/rcr5012] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
6
Evaluation of Quantitative Structure Property Relationship Algorithms for Predicting Plasma Protein Binding in Humans. ACTA ACUST UNITED AC 2021;17:100142. [PMID: 34017929 DOI: 10.1016/j.comtox.2020.100142] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
7
Gramatica P. Principles of QSAR Modeling. ACTA ACUST UNITED AC 2020. [DOI: 10.4018/ijqspr.20200701.oa1] [Citation(s) in RCA: 68] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
8
Radadiya A, Pickett JA. Characterizing human odorant signals: insights from insect semiochemistry and in silico modelling. Philos Trans R Soc Lond B Biol Sci 2020;375:20190263. [PMID: 32306882 DOI: 10.1098/rstb.2019.0263] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
9
Golbraikh A. Value of p-Value. Mol Inform 2019;38:e1800152. [PMID: 31188542 DOI: 10.1002/minf.201800152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2018] [Accepted: 05/07/2019] [Indexed: 11/09/2022]
10
Heterologous biosynthesis of triterpenoid ambrein in engineered Escherichia coli. Biotechnol Lett 2017;40:399-404. [DOI: 10.1007/s10529-017-2483-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2017] [Accepted: 11/16/2017] [Indexed: 01/12/2023]
11
Tromelin A, Chabanet C, Audouze K, Koensgen F, Guichard E. Multivariate statistical analysis of a large odorants database aimed at revealing similarities and links between odorants and odors. FLAVOUR FRAG J 2017. [DOI: 10.1002/ffj.3430] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
12
Castillo-González D, Mergny JL, De Rache A, Pérez-Machado G, Cabrera-Pérez MA, Nicolotti O, Introcaso A, Mangiatordi GF, Guédin A, Bourdoncle A, Garrigues T, Pallardó F, Cordeiro MNDS, Paz-y-Miño C, Tejera E, Borges F, Cruz-Monteagudo M. Harmonization of QSAR Best Practices and Molecular Docking Provides an Efficient Virtual Screening Tool for Discovering New G-Quadruplex Ligands. J Chem Inf Model 2015;55:2094-110. [DOI: 10.1021/acs.jcim.5b00415] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
13
Persuy MA, Sanz G, Tromelin A, Thomas-Danguin T, Gibrat JF, Pajot-Augy E. Mammalian olfactory receptors: molecular mechanisms of odorant detection, 3D-modeling, and structure-activity relationships. PROGRESS IN MOLECULAR BIOLOGY AND TRANSLATIONAL SCIENCE 2014;130:1-36. [PMID: 25623335 DOI: 10.1016/bs.pmbts.2014.11.001] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
14
Weidlich IE, Pevzner Y, Miller BT, Filippov IV, Woodcock HL, Brooks BR. Development and implementation of (Q)SAR modeling within the CHARMMing web-user interface. J Comput Chem 2014;36:62-7. [PMID: 25362883 DOI: 10.1002/jcc.23765] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2014] [Revised: 10/03/2014] [Accepted: 10/10/2014] [Indexed: 11/07/2022]
15
Gunturi SB, Ramamurthi N. A novel approach to generate robust classification models to predict developmental toxicity from imbalanced datasets. SAR AND QSAR IN ENVIRONMENTAL RESEARCH 2014;25:711-727. [PMID: 25102768 DOI: 10.1080/1062936x.2014.942357] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
16
Leahy DE, Sykora V. Automation of decision making in drug design. DRUG DISCOVERY TODAY. TECHNOLOGIES 2014;10:e437-41. [PMID: 24179997 DOI: 10.1016/j.ddtec.2013.02.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
17
Kim M, Sedykh A, Chakravarti SK, Saiakhov RD, Zhu H. Critical evaluation of human oral bioavailability for pharmaceutical drugs by using various cheminformatics approaches. Pharm Res 2014;31:1002-14. [PMID: 24306326 PMCID: PMC3955412 DOI: 10.1007/s11095-013-1222-1] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2013] [Accepted: 09/30/2013] [Indexed: 01/07/2023]
18
Mitchell JBO. Machine learning methods in chemoinformatics. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2014;4:468-481. [PMID: 25285160 PMCID: PMC4180928 DOI: 10.1002/wcms.1183] [Citation(s) in RCA: 238] [Impact Index Per Article: 23.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
19
Bonet I, Franco-Montero P, Rivero V, Teijeira M, Borges F, Uriarte E, Morales Helguera A. Classifier ensemble based on feature selection and diversity measures for predicting the affinity of A(2B) adenosine receptor antagonists. J Chem Inf Model 2013;53:3140-55. [PMID: 24289249 DOI: 10.1021/ci300516w] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
20
Zhang L, Fourches D, Sedykh A, Zhu H, Golbraikh A, Ekins S, Clark J, Connelly MC, Sigal M, Hodges D, Guiguemde A, Guy RK, Tropsha A. Discovery of novel antimalarial compounds enabled by QSAR-based virtual screening. J Chem Inf Model 2013;53:475-92. [PMID: 23252936 DOI: 10.1021/ci300421n] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
21
Muratov EN, Varlamova EV, Artemenko AG, Polishchuk PG, Kuz'min VE. Existing and Developing Approaches for QSAR Analysis of Mixtures. Mol Inform 2012;31:202-21. [PMID: 27477092 DOI: 10.1002/minf.201100129] [Citation(s) in RCA: 73] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2011] [Accepted: 02/04/2012] [Indexed: 11/10/2022]
22
Scotti L, Tullius Scotti M, de Oliveira Lima E, Sobral da Silva M, do Carmo Alves de Lima M, da Rocha Pitta I, Olímpio de Moura R, Gonzaga Batista de Oliveira J, Duarte da Cruz RM, Bezerra Mendonça FJ. Experimental methodologies and evaluations of computer-aided drug design methodologies applied to a series of 2-aminothiophene derivatives with antifungal activities. Molecules 2012;17:2298-315. [PMID: 22367025 PMCID: PMC6269054 DOI: 10.3390/molecules17032298] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2011] [Revised: 02/03/2012] [Accepted: 02/21/2012] [Indexed: 11/16/2022]  Open
23
Zhang S. Application of Machine Leaning in Drug Discovery and Development. Mach Learn 2012. [DOI: 10.4018/978-1-60960-818-7.ch517] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
24
Recent trends in statistical QSAR modeling of environmental chemical toxicity. EXPERIENTIA SUPPLEMENTUM (2012) 2012;101:381-411. [PMID: 22945576 DOI: 10.1007/978-3-7643-8340-4_13] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
25
Low Y, Uehara T, Minowa Y, Yamada H, Ohno Y, Urushidani T, Sedykh A, Muratov E, Fourches D, Zhu H, Rusyn I, Tropsha A. Predicting drug-induced hepatotoxicity using QSAR and toxicogenomics approaches. Chem Res Toxicol 2011;24:1251-62. [PMID: 21699217 PMCID: PMC4281093 DOI: 10.1021/tx200148a] [Citation(s) in RCA: 160] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
26
Rodríguez O, Teixeira MA, Rodrigues AE. Prediction of odour detection thresholds using partition coefficients. FLAVOUR FRAG J 2011. [DOI: 10.1002/ffj.2076] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
27
Nasonov AF. Computational methods and software in computer-aided combinatorial library design. RUSS J GEN CHEM+ 2011. [DOI: 10.1134/s1070363210120248] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
28
Ebalunode JO, Zheng W, Tropsha A. Application of QSAR and shape pharmacophore modeling approaches for targeted chemical library design. Methods Mol Biol 2011;685:111-33. [PMID: 20981521 DOI: 10.1007/978-1-60761-931-4_6] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
29
Zhang S. Computer-aided drug discovery and development. Methods Mol Biol 2011;716:23-38. [PMID: 21318898 DOI: 10.1007/978-1-61779-012-6_2] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
30
Hajjo R, Grulke C, Golbraikh A, Setola V, Huang XP, Roth BL, Tropsha A. Development, validation, and use of quantitative structure-activity relationship models of 5-hydroxytryptamine (2B) receptor ligands to identify novel receptor binders and putative valvulopathic compounds among common drugs. J Med Chem 2010;53:7573-86. [PMID: 20958049 PMCID: PMC3438292 DOI: 10.1021/jm100600y] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
31
Chemometric studies on natural products as potential inhibitors of the NADH oxidase from Trypanosoma cruzi using the VolSurf approach. Molecules 2010;15:7363-77. [PMID: 20966878 PMCID: PMC6259467 DOI: 10.3390/molecules15107363] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2010] [Revised: 10/05/2010] [Accepted: 10/11/2010] [Indexed: 11/16/2022]  Open
32
Tropsha A. Best Practices for QSAR Model Development, Validation, and Exploitation. Mol Inform 2010;29:476-88. [DOI: 10.1002/minf.201000061] [Citation(s) in RCA: 1086] [Impact Index Per Article: 77.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2010] [Accepted: 06/08/2010] [Indexed: 11/11/2022]
33
Per aspera ad astra: application of Simplex QSAR approach in antiviral research. Future Med Chem 2010;2:1205-26. [DOI: 10.4155/fmc.10.194] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]  Open
34
Gunturi SB, Theerthala SS, Patel NK, Bahl J, Narayanan R. Prediction of skin sensitization potential using D-optimal design and GA-kNN classification methods. SAR AND QSAR IN ENVIRONMENTAL RESEARCH 2010;21:305-335. [PMID: 20544553 DOI: 10.1080/10629361003773955] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
35
Pérez-Garrido A, Helguera AM, Rodríguez FG, Cordeiro MNDS. QSAR models to predict mutagenicity of acrylates, methacrylates and alpha,beta-unsaturated carbonyl compounds. Dent Mater 2010;26:397-415. [PMID: 20122717 DOI: 10.1016/j.dental.2009.11.158] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2009] [Revised: 09/08/2009] [Accepted: 11/26/2009] [Indexed: 11/17/2022]
36
Gedeck P, Kramer C, Ertl P. Computational analysis of structure-activity relationships. PROGRESS IN MEDICINAL CHEMISTRY 2010;49:113-60. [PMID: 20855040 DOI: 10.1016/s0079-6468(10)49004-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
37
Adekoya A, Dong X, Ebalunode J, Zheng W. Development of improved models for phosphodiesterase-4 inhibitors with a multi-conformational structure-based QSAR method. CURRENT CHEMICAL GENOMICS 2009;3:54-61. [PMID: 20161837 PMCID: PMC2802764 DOI: 10.2174/1875397300903010054] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/15/2009] [Revised: 09/15/2009] [Accepted: 09/17/2009] [Indexed: 11/29/2022]
38
Study of the structural and electronic origin of the sandalwood odor of some terpenylcyclohexanols. MONATSHEFTE FUR CHEMIE 2009. [DOI: 10.1007/s00706-009-0208-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
39
Peterson YK, Wang XS, Casey PJ, Tropsha A. Discovery of geranylgeranyltransferase-I inhibitors with novel scaffolds by the means of quantitative structure-activity relationship modeling, virtual screening, and experimental validation. J Med Chem 2009;52:4210-20. [PMID: 19537691 DOI: 10.1021/jm8013772] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
40
Puzyn T, Leszczynski J, Cronin MT. Virtual Screening and Molecular Design Based on Hierarchical Qsar Technology. RECENT ADVANCES IN QSAR STUDIES 2009;8. [PMCID: PMC7120998 DOI: 10.1007/978-1-4020-9783-6_5] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
41
Kuz'min V, Muratov E, Artemenko A, Varlamova E, Gorb L, Wang J, Leszczynski J. Consensus QSAR Modeling of Phosphor-Containing Chiral AChE Inhibitors. ACTA ACUST UNITED AC 2009. [DOI: 10.1002/qsar.200860117] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
42
Zhang L, Zhu H, Oprea TI, Golbraikh A, Tropsha A. QSAR Modeling of the Blood–Brain Barrier Permeability for Diverse Organic Compounds. Pharm Res 2008;25:1902-14. [DOI: 10.1007/s11095-008-9609-0] [Citation(s) in RCA: 111] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2007] [Accepted: 04/23/2008] [Indexed: 01/16/2023]
43
Wang XS, Tang H, Golbraikh A, Tropsha A. Combinatorial QSAR Modeling of Specificity and Subtype Selectivity of Ligands Binding to Serotonin Receptors 5HT1E and 5HT1F. J Chem Inf Model 2008;48:997-1013. [DOI: 10.1021/ci700404c] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
44
Zhu H, Rusyn I, Richard A, Tropsha A. Use of cell viability assay data improves the prediction accuracy of conventional quantitative structure-activity relationship models of animal carcinogenicity. ENVIRONMENTAL HEALTH PERSPECTIVES 2008;116:506-13. [PMID: 18414635 PMCID: PMC2291015 DOI: 10.1289/ehp.10573] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2007] [Accepted: 01/03/2008] [Indexed: 05/02/2023]
45
Hsieh JH, Wang XS, Teotico D, Golbraikh A, Tropsha A. Differentiation of AmpC beta-lactamase binders vs. decoys using classification kNN QSAR modeling and application of the QSAR classifier to virtual screening. J Comput Aided Mol Des 2008;22:593-609. [PMID: 18338225 DOI: 10.1007/s10822-008-9199-2] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2007] [Accepted: 02/18/2008] [Indexed: 11/24/2022]
46
Zhu H, Tropsha A, Fourches D, Varnek A, Papa E, Gramatica P, Oberg T, Dao P, Cherkasov A, Tetko IV. Combinatorial QSAR modeling of chemical toxicants tested against Tetrahymena pyriformis. J Chem Inf Model 2008;48:766-84. [PMID: 18311912 DOI: 10.1021/ci700443v] [Citation(s) in RCA: 188] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
47
Hierarchical QSAR technology based on the Simplex representation of molecular structure. J Comput Aided Mol Des 2008;22:403-21. [DOI: 10.1007/s10822-008-9179-6] [Citation(s) in RCA: 98] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2007] [Accepted: 01/10/2008] [Indexed: 10/22/2022]
48
Tropsha A, Wang SX. QSAR modeling of GPCR ligands: methodologies and examples of applications. ACTA ACUST UNITED AC 2007:49-73. [PMID: 17703577 DOI: 10.1007/2789_2006_003] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/07/2023]
49
Rücker C, Rücker G, Meringer M. y-Randomization and Its Variants in QSPR/QSAR. J Chem Inf Model 2007;47:2345-57. [PMID: 17880194 DOI: 10.1021/ci700157b] [Citation(s) in RCA: 534] [Impact Index Per Article: 31.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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Gunturi S, Narayanan R. In Silico ADME Modeling 3: Computational Models to Predict Human Intestinal Absorption Using Sphere Exclusion and kNN QSAR Methods. ACTA ACUST UNITED AC 2007. [DOI: 10.1002/qsar.200630094] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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