1
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Gadiya Y, Shetty S, Hofmann-Apitius M, Gribbon P, Zaliani A. Exploring SureChEMBL from a drug discovery perspective. Sci Data 2024; 11:507. [PMID: 38755219 PMCID: PMC11099139 DOI: 10.1038/s41597-024-03371-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Accepted: 05/13/2024] [Indexed: 05/18/2024] Open
Abstract
In the pharmaceutical industry, the patent protection of drugs and medicines is accorded importance because of the high costs involved in the development of novel drugs. Over the years, researchers have analyzed patent documents to identify freedom-to-operate spaces for novel drug candidates. To assist this, several well-established public patent document data repositories have enabled automated methodologies for extracting information on therapeutic agents. In this study, we delve into one such publicly available patent database, SureChEMBL, which catalogues patent documents related to life sciences. Our exploration begins by identifying patent compounds across public chemical data resources, followed by pinpointing sections in patent documents where the chemical annotations were found. Next, we exhibit the potential of compounds to serve as drug candidates by evaluating their conformity to drug-likeness criteria. Lastly, we examine the drug development stage reported for these compounds to understand their clinical success. In summary, our investigation aims at providing a comprehensive overview of the patent compounds catalogued in SureChEMBL, assessing their relevance to pharmaceutical drug discovery.
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Affiliation(s)
- Yojana Gadiya
- Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP), Schnackenburgallee 114, 22525, Hamburg, Germany.
- Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD), Theodor Stern Kai 7, 60590, Frankfurt, Germany.
- Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, 53113, Bonn, Germany.
| | - Simran Shetty
- Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP), Schnackenburgallee 114, 22525, Hamburg, Germany
- Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD), Theodor Stern Kai 7, 60590, Frankfurt, Germany
- Hamburg University of Applied Sciences (HAW), 20099, Hamburg, Germany
| | - Martin Hofmann-Apitius
- Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, 53113, Bonn, Germany
- Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53757, Sankt Augustin, Germany
| | - Philip Gribbon
- Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP), Schnackenburgallee 114, 22525, Hamburg, Germany
- Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD), Theodor Stern Kai 7, 60590, Frankfurt, Germany
| | - Andrea Zaliani
- Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP), Schnackenburgallee 114, 22525, Hamburg, Germany
- Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD), Theodor Stern Kai 7, 60590, Frankfurt, Germany
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2
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Jaiswal MK, Tiwari VK. Growing Impact of Intramolecular Click Chemistry in Organic Synthesis. CHEM REC 2023; 23:e202300167. [PMID: 37522634 DOI: 10.1002/tcr.202300167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2023] [Revised: 07/11/2023] [Indexed: 08/01/2023]
Abstract
Click Chemistry, a modular, rapid, and one of the most reliable tool for the regioselective 1,2,3-triazole forming [3+2] reaction of organic azide and terimal alkyne is widely explored in various emerging domains of research ranging from chemical biology to catalysis and medicinal chemistry to material science. This regioselective reaction from a diverse range of azido-alkyne scaffolds has been well performed in both intermolecular as well as intramolecular fashions. In comparison to the intermolecular metal (Cu/Ru/Ni) variant of 'Click Chemistry', the intramolecular click tool is little addressed. The intramolecular click chemistry is exemplified as a mordern tool of cyclization which involves metal-catalyzed (CuAAC/RuAAC) cyclization, organo-catalyzed cyclization, and thermal-induced topochemical reaction. Thus, we report herein the recent approaches on intramolecular azide-alkyne cycloaddition 'Click Chemistry' with their wide-spread emerging applications in the developement of a diverse range of molecules including fused-heterocycles, well-defined peptidomemics, and macrocyclic architectures of various notable features.
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Affiliation(s)
- Manoj K Jaiswal
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi, 221005, India
| | - Vinod K Tiwari
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi, 221005, India
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3
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Mazlee MTF, Heidelberg T, Ariffin A, Zain SM. Cation-stimulated drug delivery via lipid assembly comprising macrocyclized disaccharides - A DFT study. Carbohydr Res 2023; 532:108923. [PMID: 37598565 DOI: 10.1016/j.carres.2023.108923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2023] [Revised: 08/07/2023] [Accepted: 08/09/2023] [Indexed: 08/22/2023]
Abstract
In the attempt to create a delivery system for an alkali-cation stimulated drug release, a computational study was conducted, aiming for the evaluation of synthetic access towards glycolipid crown ethers analogs and their potential for coordination-induced changes of packing constraints for molecular assemblies. The results disfavor amide-linkages for the creation of macrocycles around the inter-glycosidic bond of a disaccharide. Conformational changes upon cation coordination of the macrocycle decrease the intersection area for easily accessible macrocycles based on lactose. This leads to shrinking intersection areas upon alkali complexation. Maltose-based analogs, on the other hand, exhibited the targeted increase of the glycolipid intersection area and, hence, may be considered as a promising resource.
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Affiliation(s)
| | - Thorsten Heidelberg
- Chemistry Department, Faculty of Science, University of Malaya, 50603, Kuala Lumpur, Malaysia.
| | - Azhar Ariffin
- Chemistry Department, Faculty of Science, University of Malaya, 50603, Kuala Lumpur, Malaysia
| | - Sharifuddin Md Zain
- Chemistry Department, Faculty of Science, University of Malaya, 50603, Kuala Lumpur, Malaysia
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4
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Deng L, Ma DH, Xie ZL, Lin RY, Zhou ZH. Crown ether-like discrete clusters for sodium binding and gas adsorption. Dalton Trans 2023. [PMID: 37318454 DOI: 10.1039/d3dt00341h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Hexanuclear polyoxomolybdenum-based discrete supermolecules Nax[MoV6O6(μ2-O)9(Htrz)6-x(trz)x]·nH2O (x = 0, n = 15, 1; x = 1, n = 12, 2; x = 2, n = 10, 3; x = 2, n = 49, 4; Htrz = 1H-1,2,3-triazole) have been prepared and fully characterized with different amounts of sodium cations inside and outside the intrinsic holes. Structural analyses demonstrate that they all exist a triangular channel constructed by six molybdenum-oxygen groups with inner diameters of 2.86 (1), 2.48 (2), and 3.04 (3/4) Å, respectively. Zero, one, or two univalent enthetic guest Na+ have been hosted around the structural centers, which reflect the expansion and contraction effects at microscopic level. Water-soluble species can serve as crown ether-like metallacycles before and after the sodium binding. Diverse nanoscale pores are further formed through intermolecular accumulations with hydrogen bonding. Gas adsorption studies indicate that 2-4 can selectively adsorb CO2 and O2 but have little or even no affinities toward H2, N2, and CH4. Theoretical calculations corroborate the roles of Na+ and auxiliary ligand with different states in bond distances, molecular orbitals, electrostatic potentials, and lattice energies in these discrete clusters. The binding orders of sodium cations in 2-4 are similar with the classical crown ethers, where 2 is the strongest one with 2.226(4)av Å for sodium cation bonded to six O atoms.
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Affiliation(s)
- Lan Deng
- State Key Laboratory of Physical Chemistry of Solid Surfaces and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, China.
| | - Deng-Hui Ma
- State Key Laboratory of Physical Chemistry of Solid Surfaces and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, China.
- Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, Xiamen University, China
| | - Zhen-Lang Xie
- State Key Laboratory of Physical Chemistry of Solid Surfaces and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, China.
| | - Rong-Yan Lin
- State Key Laboratory of Physical Chemistry of Solid Surfaces and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, China.
| | - Zhao-Hui Zhou
- State Key Laboratory of Physical Chemistry of Solid Surfaces and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, China.
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5
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Maikhuri VK, Verma V, Mathur D, Prasad AK, Chaudhary A, Kumar R. Sugars in Multicomponent Reactions: A Toolbox for Diversity-Oriented Synthesis. SYNTHESIS-STUTTGART 2023. [DOI: 10.1055/s-0042-1751418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
Abstract
AbstractMulticomponent reactions (MCRs) cover strategically employed chemical transformations that incorporate three or more reactants in one pot leading to a functionalized final product. Thus, it is an ideal tool to achieve high levels of complexity, diversity, yields of desired products, atom economy, and reduced reaction times. Sugars belong to the class of naturally occurring compounds with fascinating applications in the field of drug discovery due to the presence of various hydroxy groups and well-defined stereochemistry. However, their potential in MCRs has been realized only recently. This account describes recent advances in the synthesis of sugar-derived heterocycles synthesized by MCRs. We hope to encourage the synthetic and medicinal chemistry community to apply this powerful MCR chemistry to generate novel glycoconjugate challenges.1 Introduction2 Synthesis of Various Functionalized Sugar Compounds2.1 Passerini and Ugi Multicomponent Reactions2.2 Petasis Reaction2.3 Hantzsch Reaction2.4 Domino Ferrier–Povarov Reaction2.5 Marckwald Reaction2.6 Groebke–Blackburn–Bienaymé (GBB) Reaction2.7 Prins–Ritter Reaction2.8 Debus–Radziszewski Imidazole Synthesis Reaction2.9 Mannich Reaction2.10 A3-Coupling Reaction2.11 [3+2]-Cycloaddition Reactions2.12 Miscellaneous Reactions3 Conclusion
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Affiliation(s)
| | - Vineet Verma
- Bioorganic Laboratory, Department of Chemistry, University of Delhi
- Department of Chemistry, Starex University
| | - Divya Mathur
- Bioorganic Laboratory, Department of Chemistry, University of Delhi
- Daulat Ram College, Department of Chemistry, University of Delhi
| | - Ashok K. Prasad
- Bioorganic Laboratory, Department of Chemistry, University of Delhi
| | | | - Rajesh Kumar
- Department of Chemistry, R.D.S. College, B.R.A. Bihar University
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6
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Hudait N, Karmakar A, Basu A, Kar B, Bhuyan S, Chhetri K, Kundu S, Gopal Roy B, Sengupta J. Transglycosylation Reaction: Synthesis and Supramolecular Study of Carbohydrate‐Cased
C
2
‐Symmetric 20‐ and 22‐Membered Macrocyclic Dinucleosides. ChemistrySelect 2023. [DOI: 10.1002/slct.202204311] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2023]
Affiliation(s)
- Nandagopal Hudait
- Department of Chemistry West Bengal State University 700126 Barasat Kolkata India
| | - Arun Karmakar
- Electrochemical Process Engineering Division CSIR-CECRI 630003 Karaikudi India
| | - Arpan Basu
- Department of Chemistry West Bengal State University 700126 Barasat Kolkata, India
| | - Binoy Kar
- Department of Chemistry School of Advanced Science Vellore Institute of Technology 632014 Vellore Tamil Nadu India
| | - Samuzal Bhuyan
- Department of Chemistry Sikkim University 737102 Gangtok India
| | - Karan Chhetri
- Department of Chemistry Sikkim University 737102 Gangtok India
| | - Subrata Kundu
- Electrochemical Process Engineering Division CSIR-CECRI 630003 Karaikudi India
| | - Biswajit Gopal Roy
- Department of Chemistry Sikkim University 737102 Gangtok India
- Department of Chemistry Sikkim University 737102 Gangtok India
| | - Jhimli Sengupta
- Department of Chemistry West Bengal State University 700126 Barasat Kolkata India
- Department of Chemistry West Bengal State University 700126 Barasat Kolkata, India
- Department of Chemistry School of Advanced Science Vellore Institute of Technology 632014 Vellore Tamil Nadu India
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7
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Song B, Guo X, Yang L, Yu H, Zong X, Liu X, Wang H, Xu Z, Lin Z, Yang W. Rhodium(III)-Catalyzed C-H/O 2 Dual Activation and Macrocyclization: Synthesis and Evaluation of Pyrido[2,1-a]isoindole Grafted Macrocyclic Inhibitors for Influenza H1N1. Angew Chem Int Ed Engl 2023; 62:e202218886. [PMID: 36788706 DOI: 10.1002/anie.202218886] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Revised: 02/13/2023] [Accepted: 02/13/2023] [Indexed: 02/16/2023]
Abstract
The development of environment-friendly, step economic couplings to generate structurally diverse macrocyclic compounds is highly desirable but poses a marked challenge. Inspired by the C-H oxidation mechanism of cytochromes P450, an unprecedented and practical RhIII -catalyzed acylmethylation macrocyclization via C-H/O2 dual activation has been developed by us. The process of macrocyclization is facilitated by a synergic coordination from pyridine and ester group. Interestingly, the reaction mode derives from a three-component coupling which differs from established olefination and alkylation paths. Density functional theory (DFT) calculations and control experiments revealed the mechanism of this unique C-H/O2 dual activation. The newly achieved acylmethylation macrocyclic products and their derivatives showed a potent anti-H1N1 bioactivity, which may provide an opportunity for the discovery of novel anti-H1N1 macrocyclic leading compounds.
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Affiliation(s)
- Bichao Song
- State key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xueying Guo
- Department of Chemistry, The Hong Kong University of Science and Technology Clear Water Bay, Kowloon, Hong Kong, China
| | - Li Yang
- State key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Haiyue Yu
- State key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xinlei Zong
- School of Chinese Materia Medica, Nanjing University of Chinese Medicine, Nanjing, 210000, China
| | - Xiujuan Liu
- University of Chinese Academy of Sciences, Beijing, 100049, China.,School of Pharmaceutical Science and Technology, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, 310024, China
| | - Hao Wang
- State key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Zhongliang Xu
- State key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Zhenyang Lin
- Department of Chemistry, The Hong Kong University of Science and Technology Clear Water Bay, Kowloon, Hong Kong, China
| | - Weibo Yang
- State key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China.,University of Chinese Academy of Sciences, Beijing, 100049, China.,School of Chinese Materia Medica, Nanjing University of Chinese Medicine, Nanjing, 210000, China.,School of Pharmaceutical Science and Technology, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, 310024, China
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8
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Ricardo MG, Reuber EE, Yao L, Danglad-Flores J, Delbianco M, Seeberger PH. Design, Synthesis, and Characterization of Stapled Oligosaccharides. J Am Chem Soc 2022; 144:18429-18434. [PMID: 36173281 PMCID: PMC9562281 DOI: 10.1021/jacs.2c06882] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
![]()
Stapling short peptides
to lock specific conformations and thereby
obtain superior pharmacological properties is well established. However,
similar concepts have not been applied to oligosaccharides. Here,
we describe the design, synthesis, and characterization of the first
stapled oligosaccharides. Automated assembly of β-(1,6)-glucans
equipped with two alkenyl side chains was followed by on-resin Grubbs
metathesis for efficient ring closure with a variety of cross-linkers
of different sizes. Oligosaccharide stapling increases enzymatic stability
and cell penetration, therefore opening new opportunities for the
use of glycans in medicinal chemistry.
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Affiliation(s)
- Manuel G Ricardo
- Department of Biomolecular Systems, Max-Planck-Institute of Colloids and Interfaces, Am Muehlenberg 1, 14476 Potsdam, Germany
| | - Emelie E Reuber
- Department of Biomolecular Systems, Max-Planck-Institute of Colloids and Interfaces, Am Muehlenberg 1, 14476 Potsdam, Germany.,Institute of Chemistry and Biochemistry, Freie Universität Berlin, Arnimallee 22, 14195 Berlin, Germany
| | - Ling Yao
- Department of Biomolecular Systems, Max-Planck-Institute of Colloids and Interfaces, Am Muehlenberg 1, 14476 Potsdam, Germany
| | - José Danglad-Flores
- Department of Biomolecular Systems, Max-Planck-Institute of Colloids and Interfaces, Am Muehlenberg 1, 14476 Potsdam, Germany
| | - Martina Delbianco
- Department of Biomolecular Systems, Max-Planck-Institute of Colloids and Interfaces, Am Muehlenberg 1, 14476 Potsdam, Germany
| | - Peter H Seeberger
- Department of Biomolecular Systems, Max-Planck-Institute of Colloids and Interfaces, Am Muehlenberg 1, 14476 Potsdam, Germany.,Institute of Chemistry and Biochemistry, Freie Universität Berlin, Arnimallee 22, 14195 Berlin, Germany
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9
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Feng QY, Mao YQ, Wang MX, Tong S. Chiral Crown Ethers Accessed from Catalytic Enantioselective Desymmetrization Reactions. Org Lett 2022; 24:7107-7112. [PMID: 36148969 DOI: 10.1021/acs.orglett.2c02688] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A diversity of unprecedented chiral aza-crown ethers were synthesized straightforwardly from readily available and inexpensive aza-crown ethers. Catalyzed by a chiral phosphoric acid, desymmetrization of an array of symmetric N-arylated aza-crown ethers through tert-amino reaction proceeded efficiently under mild conditions to produce novel tetrahydroquinoline-fused aza-crown ethers in good to excellent yields with up to 96% ee. Our strategy opens a new route to functionalized chiral crown ethers.
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Affiliation(s)
- Qi-Yun Feng
- MOE Key Laboratory of Bioorganic Phosphorus and Chemical Biology, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Yu-Qi Mao
- MOE Key Laboratory of Bioorganic Phosphorus and Chemical Biology, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Mei-Xiang Wang
- MOE Key Laboratory of Bioorganic Phosphorus and Chemical Biology, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Shuo Tong
- MOE Key Laboratory of Bioorganic Phosphorus and Chemical Biology, Department of Chemistry, Tsinghua University, Beijing 100084, China
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10
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Multicomponent reaction derived small di- and tri-carbohydrate-based glycomimetics as tools for probing lectin specificity. Glycoconj J 2022; 39:587-597. [PMID: 36001188 DOI: 10.1007/s10719-022-10079-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Revised: 07/14/2022] [Accepted: 08/10/2022] [Indexed: 11/04/2022]
Abstract
Lectins, carbohydrate-binding proteins, play important functions in all forms of life from bacteria and viruses to plants, animals, and humans, participating in cell-cell communication and pathogen binding. In an attempt to modify lectin functions, artificial lectin ligands were made usually as big dendrimeric or cluster multivalent glycomimetic structures. Here we synthesized a novel set of glycomimetic ligands through protection/deprotection multicomponent reactions (MCR) approach. Multivalent di-and tri-carbohydrate glycomimetics containing D-fructose, D-galactose, and D-allose moieties were prepared in 63-96% yield. MCR glycomimetics demonstrated different binding abilities for plant lectins Con A and UEA I, and human galectin-3. Information gained about the influence of molecule structure, multivalency and optical purity on the lectin binding ability can be used in lectin detection and sensitivity measurements to further facilitate understanding of carbohydrate recognition process.
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11
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Jiao J, Maisonneuve S, Xie J. Synthesis and Azobenzene Isomerization Investigation of Photoswitchable Glycomacrocycles. J Org Chem 2022; 87:8534-8543. [PMID: 35729754 DOI: 10.1021/acs.joc.2c00652] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Macrocyclic glycoazobenzenes, as an emerging class of photoswitchable chiral macrocyclic compounds, have shown interesting properties since their discovery in 2017. We have recently employed the azobenzene-ester-linked glycosyl donor-acceptor pairs to study the influence of photoisomerization on intramolecular glycosylation. To continue the investigation on the stereoselectivity aspect of glycosylation and also to enlarge the diversity of photoswitchable glycomacrocycles, we have chosen azobenzene-triazole linkers in the present study and shown that the stereoselectivity of the glycosylation is dependent on the linker length, the configuration of the azobenzene template, as well as the reaction concentration. We have optimized the reaction conditions to prepare in good yields new glycomacrocycles, which displayed excellent photochromic properties. The influence of glycosylation reagents and acidity on the stability of the Z-azobenzene substrates and cyclic glycoazobenzenes has also been investigated, demonstrating that isomerization of macrocyclic azobenzene can be tuned by photo-, thermo-, and acid stimulus.
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Affiliation(s)
- Jinbiao Jiao
- ENS Paris-Saclay, CNRS, Photophysique et Photochimie Supramoléculaires et Macromoléculaires, Université Paris-Saclay, Gif-sur-Yvette 91190, France
| | - Stéphane Maisonneuve
- ENS Paris-Saclay, CNRS, Photophysique et Photochimie Supramoléculaires et Macromoléculaires, Université Paris-Saclay, Gif-sur-Yvette 91190, France
| | - Juan Xie
- ENS Paris-Saclay, CNRS, Photophysique et Photochimie Supramoléculaires et Macromoléculaires, Université Paris-Saclay, Gif-sur-Yvette 91190, France
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12
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Wang QD, Zhang SX, Zhang ZW, Wang Y, Ma M, Chu XQ, Shen ZL. Palladium-Catalyzed Sonogashira Coupling of a Heterocyclic Phosphonium Salt with a Terminal Alkyne. Org Lett 2022; 24:4919-4924. [PMID: 35771670 DOI: 10.1021/acs.orglett.2c01800] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
An efficient Sonogashira coupling of a heterocyclic phosphonium salt with a terminal alkyne via C-P bond cleavage was developed. The reactions proceeded smoothly in the presence of palladium catalyst, copper(I) iodide, and N,N-diisopropylethylamine (DIPEA) in N-methyl-2-pyrrolidone (NMP) at 100 °C for 12 h, producing the corresponding alkynyl-substituted pyridine, quinoline, pyrazine, and quinoxaline in moderate to good yields with wide substrate scope and broad functional group tolerance. In addition, gram-scale synthesis could also be achieved, and the reaction could be applied to the functionalization of alkyne-containing complex molecules derived from sugars and pharmaceutical and naturally occurring products (e.g., estrone, d-galactopyranose, menthol, and ibuprofen).
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Affiliation(s)
- Qing-Dong Wang
- School of Pharmacy, Yancheng Teachers University, Yancheng 224007, China
| | - Si-Xuan Zhang
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing 211816, China
| | - Zhuo-Wen Zhang
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing 211816, China
| | - Ying Wang
- School of Pharmacy, Yancheng Teachers University, Yancheng 224007, China
| | - Mengtao Ma
- College of Science, Nanjing Forestry University, Nanjing 210037, China
| | - Xue-Qiang Chu
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing 211816, China
| | - Zhi-Liang Shen
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing 211816, China
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13
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Taghizadeh A, Noroozi Pesyan N, Alamgholiloo H, Sheykhaghaei G. Immobilization of Nickel on Kryptofix 222 Modified Fe
3
O
4
@PEG Core‐Shell Nanosphere for the Clean Synthesis of 2‐Aryl‐2,3‐dihydroquinazolin‐4(1
H
)‐ones. Appl Organomet Chem 2022. [DOI: 10.1002/aoc.6787] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Akram Taghizadeh
- Department of Organic Chemistry, Faculty of Chemistry Urmia University 57159 Urmia Iran
| | - Nader Noroozi Pesyan
- Department of Organic Chemistry, Faculty of Chemistry Urmia University 57159 Urmia Iran
| | - Hassan Alamgholiloo
- Department of Organic Chemistry, Faculty of Chemistry Urmia University 57159 Urmia Iran
| | - Golaleh Sheykhaghaei
- Department of Chemistry, Science and Research Branch Islamic Azad University Tehran Iran
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14
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Zhang YP, Xiong LX, Wang Y, Li K, Wang BJ, Xie SM, Zhang JH, Yuan LM. Preparation of chiral stationary phase based on a [3+3] chiral polyimine macrocycle by thiol-ene click chemistry for enantioseparation in normal-phase and reversed-phase high performance liquid chromatography. J Chromatogr A 2022; 1676:463253. [PMID: 35732093 DOI: 10.1016/j.chroma.2022.463253] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2022] [Revised: 06/06/2022] [Accepted: 06/13/2022] [Indexed: 11/25/2022]
Abstract
Polyimine macrocycles are a new class of organic macrocycles with cyclic structures, well-defined molecular cavities, and multiple cooperative binding sites, which have recently aroused considerable research interest in molecular recognition and separation. Herein, we report the bonding of a [3+3] chiral polyimine macrocycle (H3L, C78H78N6O3) on thiol-functionalized silica gel using thiol-ene click chemistry to prepare a chiral stationary phase (CSP) for high performance liquid chromatography (HPLC). The fabricated column exhibited excellent chiral separation capability under both normal-phase and reversed-phase conditions. Fourteen and 10 racemates were well resolved on the column in normal-phase mode (using n-hexane/isopropanol as the mobile phase) and reversed-phase mode (using methanol/water as the mobile phase), respectively, including alcohols, esters, ethers, ketones, aldehydes, epoxides and organic acids. Moreover, the column also shows good selectivity toward positional isomers. Six positional isomers (dinitrobenzene, chloroaniline, bromoaniline, iodoaniline, nitrobrobenzene and nitrochlorobenzene) were well separated on the column. In addition, the effects of the injection mass and mobile phase composition on the separation were investigated. The column shows good reproducibility and stability after multiple injections with the relative standard deviation (RSD) (n = 5) of the retention time and resolution being < 0.96 % and 0.65 %, respectively. This study indicates that this type of chiral polyimine macrocycles is a promising chiral selector for HPLC enantioseparation and will push forward the applications of more novel chiral macrocycles for chiral chromatographic separation.
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Affiliation(s)
- You-Ping Zhang
- Department of Chemistry, Yunnan Normal University, Kunming, 650500, PR China
| | - Ling-Xiao Xiong
- Department of Chemistry, Yunnan Normal University, Kunming, 650500, PR China
| | - Ying Wang
- Department of Chemistry, Yunnan Normal University, Kunming, 650500, PR China
| | - Kuan Li
- Department of Chemistry, Yunnan Normal University, Kunming, 650500, PR China
| | - Bang-Jin Wang
- Department of Chemistry, Yunnan Normal University, Kunming, 650500, PR China
| | - Sheng-Ming Xie
- Department of Chemistry, Yunnan Normal University, Kunming, 650500, PR China.
| | - Jun-Hui Zhang
- Department of Chemistry, Yunnan Normal University, Kunming, 650500, PR China.
| | - Li-Ming Yuan
- Department of Chemistry, Yunnan Normal University, Kunming, 650500, PR China
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15
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Zhu D, Geng M, Yu B. Total Synthesis of Starfish Cyclic Steroid Glycosides. Angew Chem Int Ed Engl 2022; 61:e202203239. [PMID: 35383396 DOI: 10.1002/anie.202203239] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Indexed: 12/15/2022]
Abstract
Starfishes have evolved with a special type of secondary metabolites, namely starfish saponins, to ward off various predators and parasites; among them, the starfish cyclic steroid glycosides stand out structurally, featuring a unique 16-membered ring formed by bridging the steroidal C3 and C6 with a trisaccharide. The rigid cyclic scaffold and the congested and vulnerable steroid-sugar etherate linkage present an unprecedented synthetic challenge. Here we report a collective total synthesis of the major starfish cyclic steroid glycosides, namely luzonicosides A (1) and D (2) and sepositoside A (3), with an innovative approach, which entails a de novo construction of the ether-linked hexopyranosyl units, use of olefinic pyranoses as sugar precursors, and a decisive ring-closing glycosylation under the mild gold(I)-catalyzed conditions.
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Affiliation(s)
- Dapeng Zhu
- State Key Laboratory of Bioorganic and Natural Products Chemistry, Center for Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, 200032, China
| | - Mingyu Geng
- State Key Laboratory of Bioorganic and Natural Products Chemistry, Center for Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, 200032, China
| | - Biao Yu
- State Key Laboratory of Bioorganic and Natural Products Chemistry, Center for Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, 200032, China.,School of Chemistry and Materials Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, 310024, China
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16
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Liang Q, Zheng J, Lu S, Wang H, Luo L, Zhang X, Peng J, Feng N, Ma A. Intramolecular Aerobic Ring Expansion of Cyclic Ketone: A Mild Method for the Synthesis of Medium‐Sized Lactones and Macrolactones. Adv Synth Catal 2022. [DOI: 10.1002/adsc.202200192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Qi‐Ming Liang
- School of Biotechnology and Health Sciences Wuyi University Jiangmen 529020 People's Republic of China
| | - Jing‐Yun Zheng
- School of Biotechnology and Health Sciences Wuyi University Jiangmen 529020 People's Republic of China
| | - Si‐Yuan Lu
- School of Biotechnology and Health Sciences Wuyi University Jiangmen 529020 People's Republic of China
| | - Hong‐Mei Wang
- School of Biotechnology and Health Sciences Wuyi University Jiangmen 529020 People's Republic of China
| | - Lu Luo
- School of Biotechnology and Health Sciences Wuyi University Jiangmen 529020 People's Republic of China
| | - Xiang‐Zhi Zhang
- School of Biotechnology and Health Sciences Wuyi University Jiangmen 529020 People's Republic of China
| | - Jin‐Bao Peng
- School of Biotechnology and Health Sciences Wuyi University Jiangmen 529020 People's Republic of China
| | - Na Feng
- School of Biotechnology and Health Sciences Wuyi University Jiangmen 529020 People's Republic of China
| | - Ai‐Jun Ma
- School of Biotechnology and Health Sciences Wuyi University Jiangmen 529020 People's Republic of China
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17
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Total Synthesis of Starfish Cyclic Steroid Glycosides. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202203239] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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18
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Kareem NS, Mohammed SA, Abed MJ, Aneed AH, Kamal HM, Zahid NI, Sabah KJ. New macrocycles incorporating glycolipids via copper-catalyzed triazole coupling. J Carbohydr Chem 2022. [DOI: 10.1080/07328303.2022.2039685] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Nuha S. Kareem
- Department of Chemistry, Faculty of Science, University of Kufa, An-Najaf, Iraq
| | - Shaymaa A. Mohammed
- Department of Chemistry, Faculty of Science, University of Kufa, An-Najaf, Iraq
- Department of Chemistry, Faculty of Science, University of Muthana, Al-Samawa, Iraq
| | - May Jaleel Abed
- Department of Chemistry, Faculty of Science, University of Kufa, An-Najaf, Iraq
- Department of Biochemistry, Faculty of Medicine, University of Al-Qadisiyah, Al-Qadisiayah, Iraq
| | - Asaad H. Aneed
- Department of Chemistry, Faculty of Science, University of Kufa, An-Najaf, Iraq
| | - Hayder M. Kamal
- Department of Chemistry, Faculty of Science, University of Kufa, An-Najaf, Iraq
| | - N. Idayu Zahid
- Centre for Fundamental and Frontier Sciences in Nanostructure Self-Assembly, Department of Chemistry, Faculty of Science, Universiti Malaya, Kuala Lumpur, Malaysia
| | - Karem J. Sabah
- Department of Chemistry, Faculty of Science, University of Kufa, An-Najaf, Iraq
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19
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Sun D. Recent Advances in Macrocyclic Drugs and Microwave-Assisted and/or Solid-Supported Synthesis of Macrocycles. Molecules 2022; 27:1012. [PMID: 35164274 PMCID: PMC8839925 DOI: 10.3390/molecules27031012] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2021] [Revised: 01/28/2022] [Accepted: 01/29/2022] [Indexed: 11/19/2022] Open
Abstract
Macrocycles represent attractive candidates in organic synthesis and drug discovery. Since 2014, nineteen macrocyclic drugs, including three radiopharmaceuticals, have been approved by FDA for the treatment of bacterial and viral infections, cancer, obesity, immunosuppression, etc. As such, new synthetic methodologies and high throughput chemistry (e.g., microwave-assisted and/or solid-phase synthesis) to access various macrocycle entities have attracted great interest in this chemical space. This article serves as an update on our previous review related to macrocyclic drugs and new synthetic strategies toward macrocycles (Molecules, 2013, 18, 6230). In this work, I first reviewed recent FDA-approved macrocyclic drugs since 2014, followed by new advances in macrocycle synthesis using high throughput chemistry, including microwave-assisted and/or solid-supported macrocyclization strategies. Examples and highlights of macrocyclization include macrolactonization and macrolactamization, transition-metal catalyzed olefin ring-closure metathesis, intramolecular C-C and C-heteroatom cross-coupling, copper- or ruthenium-catalyzed azide-alkyne cycloaddition, intramolecular SNAr or SN2 nucleophilic substitution, condensation reaction, and multi-component reaction-mediated macrocyclization, and covering the literature since 2010.
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Affiliation(s)
- Dianqing Sun
- Department of Pharmaceutical Sciences, The Daniel K. Inouye College of Pharmacy, University of Hawaii at Hilo, Hilo, HI 96720, USA
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20
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Seoane GA, Daher GM. Readily accessible azido-alkyne-functionalized monomers for the synthesis of cyclodextrin analogues using click chemistry. Org Biomol Chem 2022; 20:1690-1698. [DOI: 10.1039/d1ob02496e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A set of linear and cyclic oligomers were synthesized starting from a suitable azido-alkyne monomer through click oligomerization. The synthesis of these monomers starting from bromobenzene features an enzymatic dihydroxylation...
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21
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Synthesis, spectral characterization and biological evaluations with DFT analysis on molecular geometry and NLO of 1,4,7,10-tetraazacyclotetradecane-11,14-dione. J INDIAN CHEM SOC 2021. [DOI: 10.1016/j.jics.2021.100132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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22
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Hazelard D, Compain P. Nucleophilic Ring‐Opening of 1,6‐Anhydrosugars: Recent Advances and Applications in Organic Synthesis. European J Org Chem 2021. [DOI: 10.1002/ejoc.202100403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Damien Hazelard
- Laboratoire d'Innovation Moléculaire et Applications (LIMA) Univ. de Strasbourg Univ. de Haute-Alsace CNRS (UMR 7042) Equipe de Synthèse Organique et Molécules Bioactives (SYBIO) ECPM 25 Rue Becquerel 67000 Strasbourg France
| | - Philippe Compain
- Laboratoire d'Innovation Moléculaire et Applications (LIMA) Univ. de Strasbourg Univ. de Haute-Alsace CNRS (UMR 7042) Equipe de Synthèse Organique et Molécules Bioactives (SYBIO) ECPM 25 Rue Becquerel 67000 Strasbourg France
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23
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Agrahari AK, Bose P, Jaiswal MK, Rajkhowa S, Singh AS, Hotha S, Mishra N, Tiwari VK. Cu(I)-Catalyzed Click Chemistry in Glycoscience and Their Diverse Applications. Chem Rev 2021; 121:7638-7956. [PMID: 34165284 DOI: 10.1021/acs.chemrev.0c00920] [Citation(s) in RCA: 165] [Impact Index Per Article: 55.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Copper(I)-catalyzed 1,3-dipolar cycloaddition between organic azides and terminal alkynes, commonly known as CuAAC or click chemistry, has been identified as one of the most successful, versatile, reliable, and modular strategies for the rapid and regioselective construction of 1,4-disubstituted 1,2,3-triazoles as diversely functionalized molecules. Carbohydrates, an integral part of living cells, have several fascinating features, including their structural diversity, biocompatibility, bioavailability, hydrophilicity, and superior ADME properties with minimal toxicity, which support increased demand to explore them as versatile scaffolds for easy access to diverse glycohybrids and well-defined glycoconjugates for complete chemical, biochemical, and pharmacological investigations. This review highlights the successful development of CuAAC or click chemistry in emerging areas of glycoscience, including the synthesis of triazole appended carbohydrate-containing molecular architectures (mainly glycohybrids, glycoconjugates, glycopolymers, glycopeptides, glycoproteins, glycolipids, glycoclusters, and glycodendrimers through regioselective triazole forming modular and bio-orthogonal coupling protocols). It discusses the widespread applications of these glycoproducts as enzyme inhibitors in drug discovery and development, sensing, gelation, chelation, glycosylation, and catalysis. This review also covers the impact of click chemistry and provides future perspectives on its role in various emerging disciplines of science and technology.
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Affiliation(s)
- Anand K Agrahari
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh 221005, India
| | - Priyanka Bose
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh 221005, India
| | - Manoj K Jaiswal
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh 221005, India
| | - Sanchayita Rajkhowa
- Department of Chemistry, Jorhat Institute of Science and Technology (JIST), Jorhat, Assam 785010, India
| | - Anoop S Singh
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh 221005, India
| | - Srinivas Hotha
- Department of Chemistry, Indian Institute of Science and Engineering Research (IISER), Pune, Maharashtra 411021, India
| | - Nidhi Mishra
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh 221005, India
| | - Vinod K Tiwari
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh 221005, India
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24
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Cui X, Zhang FQ, Li X, Hou JJ, Li H, Zhang XM. Polyoxotitanate Molecular Cage Featuring Four Types of Ethylenediamines: Formation Mechanism Insight from Host-Guest Interaction and Crystallographic Study. Inorg Chem 2021; 60:9174-9180. [PMID: 34081454 DOI: 10.1021/acs.inorgchem.1c01189] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Titanium-oxide or polyoxotitanate clusters are a new type of inorganic host materials that can encapsulate inorganic molecules or ions. We report herein a (NH4)4(enH2)[Ti18O27(PhCOO)24(en)9] molecular cage (Ti18) that encapsulates an entire organic ethylenediamine (en) ion. A thorough investigation has revealed the extraordinary versatility of en. Besides being a guest cation, it also functions as chelating and bridging ligand. It balances the charge of the negative Ti18 cage and facilitates the deprotonation of benzoic acid at the early stage of the reaction as well. DFT calculation and a derivative of Ti18 with open sites at its equatorial position shed further light on the formation mechanism. Ti18 strongly absorbs visible light as a result of en coordination, and it exhibits superior photocatalytic activity compared to anatase TiO2.
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Affiliation(s)
- Xiaoqin Cui
- Institute of Crystalline Materials, Shanxi University, Taiyuan 030006, Shanxi, China
| | - Fu-Qiang Zhang
- School of Chemistry and Material Science, Shanxi Normal University, Linfen 041004, Shanxi, China
| | - Xin Li
- Institute of Crystalline Materials, Shanxi University, Taiyuan 030006, Shanxi, China
| | - Juan-Juan Hou
- School of Chemistry and Material Science, Shanxi Normal University, Linfen 041004, Shanxi, China
| | - Huan Li
- Institute of Crystalline Materials, Shanxi University, Taiyuan 030006, Shanxi, China
| | - Xian-Ming Zhang
- Institute of Crystalline Materials, Shanxi University, Taiyuan 030006, Shanxi, China.,School of Chemistry and Material Science, Shanxi Normal University, Linfen 041004, Shanxi, China
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25
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Adhikari SB, Chen A, Wang G. Synthesis of Carbohydrate Based Macrolactones and Their Applications as Receptors for Ion Recognition and Catalysis. Molecules 2021; 26:3394. [PMID: 34205128 PMCID: PMC8199946 DOI: 10.3390/molecules26113394] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 05/20/2021] [Accepted: 05/24/2021] [Indexed: 01/23/2023] Open
Abstract
Glycomacrolactones exhibit many interesting biological properties, and they are also important in molecular recognitions and for supramolecular chemistry. Therefore, it is important to be able to access glycomacrocycles with different sizes and functionality. A new series of carbohydrate-based macrocycles containing triazole and lactone moieties have been designed and synthesized. The synthesis features an intramolecular nucleophilic substitution reaction for the macrocyclization step. In this article, the effect of some common sulfonate leaving groups is evaluated for macrolactonization. Using tosylate gave good selectivity for monolactonization products with good yields. Fourteen different macrocycles have been synthesized and characterized, of which eleven macrocycles are from cyclization of the C1 to C6 positions of N-acetyl D-glucosamine derivatives and three others from C2 to C6 cyclization of functionalized D-glucosamine derivatives. These novel macrolactones have unique structures and demonstrate interesting anion binding properties, especially for chloride. The macrocycles containing two triazoles form complexes with copper sulfate, and they are effective ligands for copper sulfate mediated azide-alkyne cycloaddition reactions (CuAAC). In addition, several macrocycles show some selectivity for different alkynes.
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Affiliation(s)
| | | | - Guijun Wang
- Department of Chemistry and Biochemistry, Old Dominion University, Norfolk, VA 23529, USA; (S.B.A.); (A.C.)
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26
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Cloutier M, Prévost MJ, Lavoie S, Feroldi T, Piochon M, Groleau MC, Legault J, Villaume S, Crouzet J, Dorey S, Dìaz De Rienzo MA, Déziel E, Gauthier C. Total synthesis, isolation, surfactant properties, and biological evaluation of ananatosides and related macrodilactone-containing rhamnolipids. Chem Sci 2021; 12:7533-7546. [PMID: 34163844 PMCID: PMC8171317 DOI: 10.1039/d1sc01146d] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Accepted: 04/22/2021] [Indexed: 01/20/2023] Open
Abstract
Rhamnolipids are a specific class of microbial surfactants, which hold great biotechnological and therapeutic potential. However, their exploitation at the industrial level is hampered because they are mainly produced by the opportunistic pathogen Pseudomonas aeruginosa. The non-human pathogenic bacterium Pantoea ananatis is an alternative producer of rhamnolipid-like metabolites containing glucose instead of rhamnose residues. Herein, we present the isolation, structural characterization, and total synthesis of ananatoside A, a 15-membered macrodilactone-containing glucolipid, and ananatoside B, its open-chain congener, from organic extracts of P. ananatis. Ananatoside A was synthesized through three alternative pathways involving either an intramolecular glycosylation, a chemical macrolactonization or a direct enzymatic transformation from ananatoside B. A series of diasteroisomerically pure (1→2), (1→3), and (1→4)-macrolactonized rhamnolipids were also synthesized through intramolecular glycosylation and their anomeric configurations as well as ring conformations were solved using molecular modeling in tandem with NMR studies. We show that ananatoside B is a more potent surfactant than its macrolide counterpart. We present evidence that macrolactonization of rhamnolipids enhances their cytotoxic and hemolytic potential, pointing towards a mechanism involving the formation of pores into the lipidic cell membrane. Lastly, we demonstrate that ananatoside A and ananatoside B as well as synthetic macrolactonized rhamnolipids can be perceived by the plant immune system, and that this sensing is more pronounced for a macrolide featuring a rhamnose moiety in its native 1 C 4 conformation. Altogether our results suggest that macrolactonization of glycolipids can dramatically interfere with their surfactant properties and biological activity.
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Affiliation(s)
- Maude Cloutier
- Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique (INRS) 531, Boulevard des Prairies Laval (Québec) H7V 1B7 Canada
| | - Marie-Joëlle Prévost
- Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique (INRS) 531, Boulevard des Prairies Laval (Québec) H7V 1B7 Canada
| | - Serge Lavoie
- Laboratoire d'Analyse et de Séparation des Essences Végétales (LASEVE), Département des Sciences Fondamentales, Université du Québec à Chicoutimi 555, Boulevard de l'Université Chicoutimi (Québec) G7H 2B1 Canada
| | - Thomas Feroldi
- Laboratoire d'Analyse et de Séparation des Essences Végétales (LASEVE), Département des Sciences Fondamentales, Université du Québec à Chicoutimi 555, Boulevard de l'Université Chicoutimi (Québec) G7H 2B1 Canada
| | - Marianne Piochon
- Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique (INRS) 531, Boulevard des Prairies Laval (Québec) H7V 1B7 Canada
| | - Marie-Christine Groleau
- Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique (INRS) 531, Boulevard des Prairies Laval (Québec) H7V 1B7 Canada
| | - Jean Legault
- Laboratoire d'Analyse et de Séparation des Essences Végétales (LASEVE), Département des Sciences Fondamentales, Université du Québec à Chicoutimi 555, Boulevard de l'Université Chicoutimi (Québec) G7H 2B1 Canada
| | - Sandra Villaume
- Université de Reims Champagne-Ardenne, INRAE, USC RIBP 1488, SFR Condorcet-FR CNRS 3417 51100 Reims France
| | - Jérôme Crouzet
- Université de Reims Champagne-Ardenne, INRAE, USC RIBP 1488, SFR Condorcet-FR CNRS 3417 51100 Reims France
| | - Stéphan Dorey
- Université de Reims Champagne-Ardenne, INRAE, USC RIBP 1488, SFR Condorcet-FR CNRS 3417 51100 Reims France
| | - Mayri Alejandra Dìaz De Rienzo
- Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique (INRS) 531, Boulevard des Prairies Laval (Québec) H7V 1B7 Canada
- School of Pharmacy and Biomolecular Sciences, Liverpool John Moores University L3 3AF Liverpool UK
| | - Eric Déziel
- Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique (INRS) 531, Boulevard des Prairies Laval (Québec) H7V 1B7 Canada
| | - Charles Gauthier
- Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique (INRS) 531, Boulevard des Prairies Laval (Québec) H7V 1B7 Canada
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27
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Sabah KJ, Zahid NI, Hashim R. Synthesis of new chiral macrocycles-based glycolipids and its application in asymmetric Michael addition. RESEARCH ON CHEMICAL INTERMEDIATES 2021. [DOI: 10.1007/s11164-021-04432-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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28
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Bordes A, Poveda A, Fontelle N, Ardá A, Guillard J, Ruan YB, Marrot J, Imaeda S, Kato A, Désiré J, Xie J, Jiménez-Barbero J, Blériot Y. Synthesis and chelation study of a fluoroionophore and a glycopeptide based on an aza crown iminosugar structure. Carbohydr Res 2021; 501:108258. [PMID: 33618101 DOI: 10.1016/j.carres.2021.108258] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2020] [Revised: 02/05/2021] [Accepted: 02/05/2021] [Indexed: 11/30/2022]
Abstract
Capitalizing on a recently reported iminosugar-based aza-crown (ISAC) accessed by a double Staudinger azaWittig coupling reaction, we have expanded the structural diversity of this new family of sweet cyclam analogs. Replacement of the two secondary amines linking the iminosugar units by two amide bonds obtained a cyclodimerization by with BOP and DIPEA led to a macrocycle that did not demonstrate efficient Zn2+ chelation unlike the parent ISAC. Introduction of two pyrene moieties on the secondary amines of the parent ISAC yielded a new fluoroionophore that selectively binds Hg2+ in methanol.
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Affiliation(s)
- Alexandra Bordes
- Université de Poitiers, IC2MP, UMR CNRS 7285, Equipe "Synthèse Organique", Groupe Glycochimie, 4 rue Michel Brunet, 86073, Poitiers Cedex 9, France
| | - Ana Poveda
- CICbioGUNE, ParqueTecnoloǵico de Bizkaia, Derio-Bizkaia, 48160, Spain
| | - Nathalie Fontelle
- Université de Poitiers, IC2MP, UMR CNRS 7285, Equipe "Synthèse Organique", Groupe Glycochimie, 4 rue Michel Brunet, 86073, Poitiers Cedex 9, France
| | - Ana Ardá
- CICbioGUNE, ParqueTecnoloǵico de Bizkaia, Derio-Bizkaia, 48160, Spain
| | - Jérôme Guillard
- Université de Poitiers, IC2MP, UMR CNRS 7285, Equipe "Synthèse Organique", Groupe Glycochimie, 4 rue Michel Brunet, 86073, Poitiers Cedex 9, France
| | - Yi Bin Ruan
- Université Paris-Saclay, ENS Paris-Saclay, CNRS, Photophysique et Photochimie Supra- et Macromoléculaires (PPSM), 4 avenue des Sciences, 91190, Gif-sur-Yvette, France
| | - Jérôme Marrot
- Institut Lavoisier de Versailles, UMR-CNRS 8180, Université de Versailles, 45 Avenue des États-Unis, 78035, Versailles Cedex, France
| | - Shuki Imaeda
- Department of Hospital Pharmacy, University of Toyama, 2630 Sugitani, Toyama, 930-0194, Japan
| | - Atsushi Kato
- Department of Hospital Pharmacy, University of Toyama, 2630 Sugitani, Toyama, 930-0194, Japan
| | - Jérôme Désiré
- Université de Poitiers, IC2MP, UMR CNRS 7285, Equipe "Synthèse Organique", Groupe Glycochimie, 4 rue Michel Brunet, 86073, Poitiers Cedex 9, France
| | - Juan Xie
- Université Paris-Saclay, ENS Paris-Saclay, CNRS, Photophysique et Photochimie Supra- et Macromoléculaires (PPSM), 4 avenue des Sciences, 91190, Gif-sur-Yvette, France.
| | - Jesús Jiménez-Barbero
- CICbioGUNE, ParqueTecnoloǵico de Bizkaia, Derio-Bizkaia, 48160, Spain; IKERBASQUE, Basque Foundation for Science, 48009, Bilbao, Spain; Dept. Organic Chemistry II, Faculty of Science and Technology, University of the Basque Country, 48940, Leioa, Spain.
| | - Yves Blériot
- Université de Poitiers, IC2MP, UMR CNRS 7285, Equipe "Synthèse Organique", Groupe Glycochimie, 4 rue Michel Brunet, 86073, Poitiers Cedex 9, France.
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29
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Wu LJ, Yang LF, Lv GF, Li JH. Divergent functionalization of terminal alkynes enabled alkynylative [5+1] benzannulation of 3-acetoxy-1,4-enynes. Chem Commun (Camb) 2020; 56:15329-15332. [PMID: 33220665 DOI: 10.1039/d0cc06793h] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
We here describe an alkynylative [5+1] benzannulation of 3-acetoxy-1,4-enynes with terminal alkynes, which enables both the construction of a benzene ring skeleton and intermolecular incorporation of an alkynyl group in a single reaction using Pd and Cu cooperative catalysts. The method represents efficient access to internal aryl alkynes through divergent functionalization of two terminal alkyne components: one alkyne serves as the one-carbon unit to realize the [5+1] benzannulation and the other alkyne as a nucleophile terminates the reaction.
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Affiliation(s)
- Li-Jun Wu
- Key Laboratory of Jiangxi Province for Persistent Pollutants Control and Resources Recycle, Nanchang Hangkong University, Nanchang 330063, China.
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30
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Platonova YB, Volov AN, Tomilova LG. Palladium(II) phthalocyanines efficiently promote phosphine-free Sonogashira cross-coupling reaction at room temperature. J Catal 2020. [DOI: 10.1016/j.jcat.2020.08.019] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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31
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Carbajo-Gordillo AI, Jiménez Blanco JL, Benito JM, Lana H, Marcelo G, Di Giorgio C, Przybylski C, Hinou H, Ceña V, Ortiz Mellet C, Mendicuti F, Tros de Ilarduya C, García Fernández JM. Click Synthesis of Size- and Shape-Tunable Star Polymers with Functional Macrocyclic Cores for Synergistic DNA Complexation and Delivery. Biomacromolecules 2020; 21:5173-5188. [PMID: 33084317 DOI: 10.1021/acs.biomac.0c01283] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
The architectural perfection and multivalency of dendrimers have made them useful for biodelivery via peripheral functionalization and the adjustment of dendrimer generations. Modulation of the core-forming and internal matrix-forming structures offers virtually unlimited opportunities for further optimization, but only in a few cases this has been made compatible with strict diastereomeric purity over molecularly diverse series, low toxicity, and limited synthetic effort. Fully regular star polymers built on biocompatible macrocyclic platforms, such as hyperbranched cyclodextrins, offer advantages in terms of facile synthesis and flexible compositions, but core elaboration in terms of shape and function becomes problematic. Here we report the synthesis and characterization of star polymers consisting of functional trehalose-based macrocyclic cores (cyclotrehalans, CTs) and aminothiourea dendron arms, which can be efficiently synthesized from sequential click reactions of orthogonal monomers, display no cytotoxicity, and efficiently complex and deliver plasmid DNA in vitro and in vivo. When compared with some commercial cationic dendrimers or polymers, the new CT-scaffolded star polymers show better transfection efficiencies in several cell lines and structure-dependent cell selectivity patterns. Notably, the CT core could be predefined to exert Zn(II) complexing or molecular inclusion capabilities, which has been exploited to synergistically boost cell transfection by orders of magnitude and modulate the organ tropism in vivo.
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Affiliation(s)
- Ana I Carbajo-Gordillo
- Instituto de Investigaciones Químicas (IIQ), CSIC - Universidad de Sevilla, Avda. Américo Vespucio 49, 41092 Sevilla, Spain
| | - José L Jiménez Blanco
- Department of Organic Chemistry, Faculty of Chemistry, University of Seville, c/Profesor García González 1, 41012 Sevilla, Spain
| | - Juan M Benito
- Instituto de Investigaciones Químicas (IIQ), CSIC - Universidad de Sevilla, Avda. Américo Vespucio 49, 41092 Sevilla, Spain
| | - Hugo Lana
- Department of Pharmaceutical Technology and Chemistry, School of Pharmacy and Nutrition, University of Navarra, 31080 Pamplona, Spain
| | - Gema Marcelo
- Department of Analytical Chemistry, Physical Chemistry and Chemical Engineering, Faculty of Chemistry, University of Alcalá, Alcalá de Henares, Madrid, Spain
| | - Christophe Di Giorgio
- Institut de Chimie Nice, UMR 7272, Université Côte d'Azur, 28 Avenue de Valrose, F-06108 Nice, France
| | - Cédric Przybylski
- CNRS, Institut Parisien de Chimie Moléculaire, IPCM, Sorbonne Université, Paris, France
| | - Hiroshi Hinou
- Graduate School and Faculty of Advanced Life Science, Laboratory of Advanced Chemical Biology, Hokkaido University, N21 W11, Sapporo 001-0021, Japan
| | - Valentín Ceña
- Unidad Asociada Neurodeath, Facultad de Medicina, Universidad de Castilla-La Mancha, Albacete, Spain.,CIBERNED, Instituto de Salud Carlos III, Madrid, Spain
| | - Carmen Ortiz Mellet
- Department of Organic Chemistry, Faculty of Chemistry, University of Seville, c/Profesor García González 1, 41012 Sevilla, Spain
| | - Francisco Mendicuti
- Department of Analytical Chemistry, Physical Chemistry and Chemical Engineering, Faculty of Chemistry, University of Alcalá, Alcalá de Henares, Madrid, Spain
| | - Conchita Tros de Ilarduya
- Department of Pharmaceutical Technology and Chemistry, School of Pharmacy and Nutrition, University of Navarra, 31080 Pamplona, Spain
| | - José M García Fernández
- Instituto de Investigaciones Químicas (IIQ), CSIC - Universidad de Sevilla, Avda. Américo Vespucio 49, 41092 Sevilla, Spain
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32
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Singh A, Maikhuri VK, Verma V, Chhatwal RJ, Sharma D, Prasad AK. Synthesis and carboxylate anion binding studies on cyclic sugar-amino acid hybrids. SYNTHETIC COMMUN 2020. [DOI: 10.1080/00397911.2020.1785502] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Ankita Singh
- Bioorganic Laboratory, Department of Chemistry, University of Delhi, Delhi, India
| | - Vipin K. Maikhuri
- Bioorganic Laboratory, Department of Chemistry, University of Delhi, Delhi, India
| | - Vineet Verma
- Bioorganic Laboratory, Department of Chemistry, University of Delhi, Delhi, India
| | | | - Deepti Sharma
- Sri Venkateswara College, University of Delhi, Delhi, India
| | - Ashok K. Prasad
- Bioorganic Laboratory, Department of Chemistry, University of Delhi, Delhi, India
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33
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New syntheses of haloketo acid methyl esters and their transformation to halolactones by reductive cyclization. Russ Chem Bull 2020. [DOI: 10.1007/s11172-020-2965-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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34
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Novel polymer crafted sugar thiacrown ether and its applications in recovery of metal ions. Carbohydr Res 2020; 495:108057. [DOI: 10.1016/j.carres.2020.108057] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Revised: 05/22/2020] [Accepted: 06/01/2020] [Indexed: 11/22/2022]
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35
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Liang L, Niu HY, Li RL, Wang YF, Yan JK, Li CG, Guo HM. Photoinduced Copper-Catalyzed Site-Selective C(sp2)–C(sp) Cross-Coupling via Aryl Sulfonium Salts. Org Lett 2020; 22:6842-6846. [DOI: 10.1021/acs.orglett.0c02364] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Lei Liang
- School of Chemistry and Chemical Engineering, Henan Institute of Science and Technology, Xinxiang, Henan 453003, China
| | - Hong-Ying Niu
- School of Chemistry and Chemical Engineering, Henan Institute of Science and Technology, Xinxiang, Henan 453003, China
| | - Ren-Long Li
- School of Chemistry and Chemical Engineering, Henan Institute of Science and Technology, Xinxiang, Henan 453003, China
| | - Yao-Fei Wang
- School of Chemistry and Chemical Engineering, Henan Institute of Science and Technology, Xinxiang, Henan 453003, China
| | - Jin-Kai Yan
- School of Chemistry and Chemical Engineering, Henan Institute of Science and Technology, Xinxiang, Henan 453003, China
| | - Chang-Gong Li
- School of Chemistry and Chemical Engineering, Henan Institute of Science and Technology, Xinxiang, Henan 453003, China
| | - Hai-Ming Guo
- School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan 453007, China
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36
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Singh K, Tripathi RP. An Overview on Glyco-Macrocycles: Potential New Lead and their Future in Medicinal Chemistry. Curr Med Chem 2020; 27:3386-3410. [PMID: 30827227 DOI: 10.2174/0929867326666190227232721] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2018] [Revised: 02/08/2019] [Accepted: 02/14/2019] [Indexed: 12/18/2022]
Abstract
Macrocycles cover a small segment of molecules with a vast range of biological activity in the chemotherapeutic world. Primarily, the natural sources derived from macrocyclic drug candidates with a wide range of biological activities are known. Further evolutions of the medicinal chemistry towards macrocycle-based chemotherapeutics involve the functionalization of the natural product by hemisynthesis. More recently, macrocycles based on carbohydrates have evolved a considerable interest among the medicinal chemists worldwide. Carbohydrates provide an ideal scaffold to generate chiral macrocycles with well-defined pharmacophores in a decorated fashion to achieve the desired biological activity. We have given an overview on carbohydrate-derived macrocycle involving their synthesis in drug design and discovery and potential role in medicinal chemistry.
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Affiliation(s)
- Kartikey Singh
- Medicinal and Process Chemistry Division, CSIR-Central Drug Research Institute, Lucknow 226031, U.P., India
| | - Rama Pati Tripathi
- Medicinal and Process Chemistry Division, CSIR-Central Drug Research Institute, Lucknow 226031, U.P., India.,National Institute of Pharmaceutical Education and Research Raebareli, New Transit Campus, Bijnor Road, Sarojani Nagar Near CRPF Base Camp, Lucknow 226002, U.P., India
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37
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Lin C, Jiao J, Maisonneuve S, Mallétroit J, Xie J. Stereoselective synthesis and properties of glycoazobenzene macrocycles through intramolecular glycosylation. Chem Commun (Camb) 2020; 56:3261-3264. [PMID: 32101198 DOI: 10.1039/c9cc09853d] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
An intramolecular glycosylation strategy was used to synthesize a series of new glycoazobenzene macrocycles with high α-selectivity and interesting chiroptical properties. The photoisomerization of an azobenzene template influences mainly the efficiency of the glycosylation.
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Affiliation(s)
- Chaoqi Lin
- Université Paris-Saclay, ENS Paris-Saclay, CNRS, PPSM, 61 Av. du Président Wilson, 94235 Cachan, France.
| | - Jinbiao Jiao
- Université Paris-Saclay, ENS Paris-Saclay, CNRS, PPSM, 61 Av. du Président Wilson, 94235 Cachan, France.
| | - Stéphane Maisonneuve
- Université Paris-Saclay, ENS Paris-Saclay, CNRS, PPSM, 61 Av. du Président Wilson, 94235 Cachan, France.
| | - Julien Mallétroit
- Université Paris-Saclay, ENS Paris-Saclay, CNRS, PPSM, 61 Av. du Président Wilson, 94235 Cachan, France.
| | - Juan Xie
- Université Paris-Saclay, ENS Paris-Saclay, CNRS, PPSM, 61 Av. du Président Wilson, 94235 Cachan, France.
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38
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Bordes A, Poveda A, Troadec T, Franconetti A, Ardá A, Perrin F, Ménand M, Sollogoub M, Guillard J, Désiré J, Tripier R, Jiménez-Barbero J, Blériot Y. Synthesis, Conformational Analysis, and Complexation Study of an Iminosugar-Aza-Crown, a Sweet Chiral Cyclam Analog. Org Lett 2020; 22:2344-2349. [PMID: 32153195 PMCID: PMC7114874 DOI: 10.1021/acs.orglett.0c00503] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
![]()
A new family of chiral C2 symmetric
tetraazamacrocycles, coined ISAC for IminoSugar Aza-Crown, incorporating
two iminosugars adopting a 4C1 conformation
is disclosed. Multinuclear NMR experiments on the corresponding Cd2+ complex show that the ISAC is a strong chelator in water
and its tetramine cavity adopts a conformation similar to that of
the parent Cd–cyclam complex. Similar behavior is observed
with Cu2+ in solution, with enhanced stability compared
to the Cu–cyclam complex.
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Affiliation(s)
- Alexandra Bordes
- Université de Poitiers, IC2MP, UMR CNRS 7285, Equipe "Synthèse Organique", Groupe Glycochimie 4 rue Michel Brunet, 86073 Poitiers cedex 9, France
| | - Ana Poveda
- CIC bioGUNE, Parque Tecnológico de Bizkaia, Edif. 801A-1°, Derio-Bizkaia 48160, Spain
| | - Thibault Troadec
- Universite de Brest, UMR-CNRS 6521 CEMCA, 6 Avenue Victor le Gorgeu, 29200 Brest, France
| | - Antonio Franconetti
- CIC bioGUNE, Parque Tecnológico de Bizkaia, Edif. 801A-1°, Derio-Bizkaia 48160, Spain
| | - Ana Ardá
- CIC bioGUNE, Parque Tecnológico de Bizkaia, Edif. 801A-1°, Derio-Bizkaia 48160, Spain
| | - Flavie Perrin
- Université de Poitiers, IC2MP, UMR CNRS 7285, Equipe "Synthèse Organique", Groupe Glycochimie 4 rue Michel Brunet, 86073 Poitiers cedex 9, France
| | - Mickaël Ménand
- Sorbonne Université, CNRS, Institut Parisien de Chimie Moléculaire, UMR 8232, 4 place Jussieu, 75005 Paris, France
| | - Matthieu Sollogoub
- Sorbonne Université, CNRS, Institut Parisien de Chimie Moléculaire, UMR 8232, 4 place Jussieu, 75005 Paris, France
| | - Jerôme Guillard
- Université de Poitiers, IC2MP, UMR CNRS 7285, Equipe "Synthèse Organique", Groupe Glycochimie 4 rue Michel Brunet, 86073 Poitiers cedex 9, France
| | - Jérôme Désiré
- Université de Poitiers, IC2MP, UMR CNRS 7285, Equipe "Synthèse Organique", Groupe Glycochimie 4 rue Michel Brunet, 86073 Poitiers cedex 9, France
| | - Raphaël Tripier
- Universite de Brest, UMR-CNRS 6521 CEMCA, 6 Avenue Victor le Gorgeu, 29200 Brest, France
| | - Jesús Jiménez-Barbero
- CIC bioGUNE, Parque Tecnológico de Bizkaia, Edif. 801A-1°, Derio-Bizkaia 48160, Spain.,IKERBASQUE, Basque Foundation for Science, 48009 Bilbao, Spain.,Dept. Organic Chemistry II, Faculty of Science and Technology, University of the Basque Country, 48940 Leioa, Spain
| | - Yves Blériot
- Université de Poitiers, IC2MP, UMR CNRS 7285, Equipe "Synthèse Organique", Groupe Glycochimie 4 rue Michel Brunet, 86073 Poitiers cedex 9, France
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39
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Beng TK, Garcia J, Smith M, Orellana AO. Skeletal remodelling of α-substituted cyclic eneformamides to α-ketonyl cyclic amines. NEW J CHEM 2020. [DOI: 10.1039/d0nj02768e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
A modular dehomologation strategy, which skeletally remodels cyclic α-substituted eneformamides to one-carbon shorter α-ketonyl saturated cyclic amines is described.
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Affiliation(s)
- Timothy K. Beng
- Department of Chemistry
- Central Washington University
- Ellensburg
- USA
| | - Jorge Garcia
- Department of Chemistry
- Central Washington University
- Ellensburg
- USA
| | - Meagan Smith
- Department of Chemistry
- Central Washington University
- Ellensburg
- USA
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40
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Gajewska A, Osuch-Kwiatkowska A, Jarosz S. Synthesis of sulfur containing macrocycles with sucrose scaffold. Carbohydr Res 2019; 486:107825. [PMID: 31580967 DOI: 10.1016/j.carres.2019.107825] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Revised: 09/25/2019] [Accepted: 09/25/2019] [Indexed: 01/17/2023]
Abstract
The first synthesis of sucrose-based macrocycles containing two sulfur atoms in the ring was presented. The synthesis was initiated from known 6,6'-dideoxy-6,6'-di-chloro-1',2,3,3',4,4'-hexa-O-benzyl-sucrose in which both terminal positions (C6 and C6') were elongated by the -S-CH2-CH2-OH unit. The resulting diol was converted into dichloride and reacted further with a series of diamines which afforded the corresponding macrocyclic derivatives in high yields.
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Affiliation(s)
- Agnieszka Gajewska
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224, Warsaw, Poland
| | - Anna Osuch-Kwiatkowska
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224, Warsaw, Poland
| | - Sławomir Jarosz
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224, Warsaw, Poland.
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41
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Nawój M, Grobelny A, Mlynarski J. Macrolide Core Synthesis of Calysolin IX Using an Intramolecular Glycosylation Approach. European J Org Chem 2019. [DOI: 10.1002/ejoc.201901480] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Mirosław Nawój
- Faculty of Chemistry; Jagiellonian University; Gronostajowa 2 Cracow Poland
| | - Artur Grobelny
- Faculty of Chemistry; Jagiellonian University; Gronostajowa 2 Cracow Poland
| | - Jacek Mlynarski
- Institute of Organic Chemistry; Polish Academy of Sciences; Kasprzaka 44/52 Warsaw Poland
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42
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Tyrikos-Ergas T, Fittolani G, Seeberger PH, Delbianco M. Structural Studies Using Unnatural Oligosaccharides: Toward Sugar Foldamers. Biomacromolecules 2019; 21:18-29. [DOI: 10.1021/acs.biomac.9b01090] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Theodore Tyrikos-Ergas
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476 Potsdam, Germany
- Department of Chemistry and Biochemistry, Freie Universität Berlin, Arnimallee 22, 14195 Berlin, Germany
| | - Giulio Fittolani
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476 Potsdam, Germany
- Department of Chemistry and Biochemistry, Freie Universität Berlin, Arnimallee 22, 14195 Berlin, Germany
| | - Peter H. Seeberger
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476 Potsdam, Germany
- Department of Chemistry and Biochemistry, Freie Universität Berlin, Arnimallee 22, 14195 Berlin, Germany
| | - Martina Delbianco
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476 Potsdam, Germany
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43
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Alqarni Y, Bell TDM, Tabor RF, Saito K. Topologically Controlled Synthesis of Reversible Macrocyclic Compounds in Microemulsions. J Org Chem 2019; 84:8596-8601. [PMID: 31180219 DOI: 10.1021/acs.joc.9b00913] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
A novel and simple approach was used to synthesize a reversible macrocyclic compound. This approach is based on capturing molecules with a photodynamic covalent bond inside microemulsions as nanoreactors and exposing them to UV radiation to facilitate a stereoselective reaction to form cyclic compounds quantitatively and selectively. The size of the microemulsion droplets used played a crucial role in synthesizing the reversible macrocyclic compounds. The formed macrocyclic compound was able to revert to monomers under UV irradiation of a shorter wavelength.
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Affiliation(s)
- Yanallah Alqarni
- School of Chemistry , Monash University , Clayton , Victoria 3800 , Australia
| | - Toby D M Bell
- School of Chemistry , Monash University , Clayton , Victoria 3800 , Australia
| | - Rico F Tabor
- School of Chemistry , Monash University , Clayton , Victoria 3800 , Australia
| | - Kei Saito
- School of Chemistry , Monash University , Clayton , Victoria 3800 , Australia
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44
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Chizhov AO, Tsvetkov YE, Nifantiev NE. Gas-Phase Fragmentation of Cyclic Oligosaccharides in Tandem Mass Spectrometry. Molecules 2019; 24:molecules24122226. [PMID: 31207901 PMCID: PMC6631135 DOI: 10.3390/molecules24122226] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Revised: 06/03/2019] [Accepted: 06/11/2019] [Indexed: 01/05/2023] Open
Abstract
Modern mass spectrometry, including electrospray and MALDI, is applied for analysis and structure elucidation of carbohydrates. Cyclic oligosaccharides isolated from different sources (bacteria and plants) have been known for decades and some of them (cyclodextrins and their derivatives) are widely used in drug design, as food additives, in the construction of nanomaterials, etc. The peculiarities of the first- and second-order mass spectra of cyclic oligosaccharides (natural, synthetic and their derivatives and modifications: cyclodextrins, cycloglucans, cyclofructans, cyclooligoglucosamines, etc.) are discussed in this minireview.
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Affiliation(s)
- Alexander O Chizhov
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Science, Leninskii Prosp., 47, 119991 Moscow, Russia.
| | - Yury E Tsvetkov
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Science, Leninskii Prosp., 47, 119991 Moscow, Russia.
| | - Nikolay E Nifantiev
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Science, Leninskii Prosp., 47, 119991 Moscow, Russia.
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45
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Geng WC, Huang Q, Xu Z, Wang R, Guo DS. Gene delivery based on macrocyclic amphiphiles. Theranostics 2019; 9:3094-3106. [PMID: 31244943 PMCID: PMC6567961 DOI: 10.7150/thno.31914] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Accepted: 03/06/2019] [Indexed: 12/22/2022] Open
Abstract
Gene therapy, with an important role in biomedicine, often requires vectors for gene condensation in order to avoid degradation, improve membrane permeation, and achieve targeted delivery. Macrocyclic molecules are a family of artificial receptors that can selectively bind a variety of guest species. Amphiphilic macrocycles, particularly those bearing cationic charges and their various assemblies represent a new class of promising non-viral vectors with intrinsic advantages in gene condensation and delivery. The most prominent examples include amphiphilic cyclodextrins, calixarenes and pillararenes. Herein, we systemically reviewed reported assemblies of amphiphilic macrocycles for gene delivery and therapy. The advantages and disadvantages of each type of macrocyclic amphiphiles for gene delivery, as well as the perspectives on the future development of this area are discussed.
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Affiliation(s)
- Wen-Chao Geng
- College of Chemistry, Key Laboratory of Functional Polymer Materials (Ministry of Education), State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin 300071, China
| | - Qiaoxian Huang
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Taipa, Macau SAR, China
| | - Zhe Xu
- College of Chemistry, Key Laboratory of Functional Polymer Materials (Ministry of Education), State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin 300071, China
| | - Ruibing Wang
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Taipa, Macau SAR, China
| | - Dong-Sheng Guo
- College of Chemistry, Key Laboratory of Functional Polymer Materials (Ministry of Education), State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin 300071, China
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46
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Palladium(II) octaalkoxy- and octaphenoxyphthalocyanines: Synthesis and evaluation as catalysts in the Sonogashira reaction. J Catal 2019. [DOI: 10.1016/j.jcat.2019.04.003] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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47
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Janssens J, Van der Eycken J, Van Calenbergh S. Ceramide-Templated Macrolactams: Total Synthesis and Biological Evaluation of Macrocyclic α-Galactosylceramide Analogues and their Aglycons. European J Org Chem 2019. [DOI: 10.1002/ejoc.201801839] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Jonas Janssens
- Department of Pharmaceutics (FFW); Ghent University; Ottergemsesteenweg 460, B -9000 Ghent Belgium
| | - Johan Van der Eycken
- Department of Organic and Macromolecular Chemistry; Krijgslaan 281 (S4), B -9000 Ghent Belgium
| | - Serge Van Calenbergh
- Department of Pharmaceutics (FFW); Ghent University; Ottergemsesteenweg 460, B -9000 Ghent Belgium
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48
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Sokołowska P, Kowalski M, Jarosz S. First synthesis of cryptands with sucrose scaffold. Beilstein J Org Chem 2019; 15:210-217. [PMID: 30745995 PMCID: PMC6350891 DOI: 10.3762/bjoc.15.20] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2018] [Accepted: 01/02/2019] [Indexed: 11/23/2022] Open
Abstract
Cryptands with sucrose scaffold, an unknown class of such derivatives, were prepared from the readily available 2,3,3’,4,4’-penta-O-benzylsucrose and 1’,2,3,3’,4,4’-hexa-O-benzylsucrose.
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Affiliation(s)
- Patrycja Sokołowska
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Michał Kowalski
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Sławomir Jarosz
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
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49
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Lin C, Maisonneuve S, Theulier C, Xie J. Synthesis and Photochromic Properties of Azobenzene-Derived Glycomacrolactones. European J Org Chem 2019. [DOI: 10.1002/ejoc.201801832] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Chaoqi Lin
- PPSM, ENS Paris-Saclay, CNRS; Université Paris-Saclay; 94235 Cachan France
| | | | - Cyril Theulier
- PPSM, ENS Paris-Saclay, CNRS; Université Paris-Saclay; 94235 Cachan France
| | - Juan Xie
- PPSM, ENS Paris-Saclay, CNRS; Université Paris-Saclay; 94235 Cachan France
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50
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Chen A, Samankumara LP, Dodlapati S, Wang D, Adhikari S, Wang G. Syntheses of
Bis
‐Triazole Linked Carbohydrate Based Macrocycles and Their Applications for Accelerating Copper Sulfate Mediated Click Reaction. European J Org Chem 2019. [DOI: 10.1002/ejoc.201801714] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- Anji Chen
- Department of Chemistry and Biochemistry Old Dominion University 4541 Hampton Boulevard 23529 Norfolk VA USA
| | - Lalith P. Samankumara
- Boehringer Ingelheim Pharmaceuticals 900 Ridgebury Road, Ridgefield, CT 900 Ridgebury Road 06877 Ridgefield CT USA
| | - Sanjeeva Dodlapati
- Department of Chemistry and Biochemistry Old Dominion University 4541 Hampton Boulevard 23529 Norfolk VA USA
| | - Dan Wang
- Department of Chemistry and Biochemistry Old Dominion University 4541 Hampton Boulevard 23529 Norfolk VA USA
| | - Surya Adhikari
- Department of Chemistry and Biochemistry Old Dominion University 4541 Hampton Boulevard 23529 Norfolk VA USA
| | - Guijun Wang
- Department of Chemistry and Biochemistry Old Dominion University 4541 Hampton Boulevard 23529 Norfolk VA USA
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