1
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Kojima T. Bio-inspired oxidation catalysis based on proton-coupled electron transfer: Toward efficient and selective oxidation of methane to methanol. J Inorg Biochem 2025; 267:112856. [PMID: 40020428 DOI: 10.1016/j.jinorgbio.2025.112856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2024] [Revised: 01/26/2025] [Accepted: 02/13/2025] [Indexed: 03/03/2025]
Abstract
In this paper, a trail of my research is described starting from oxidation of alkanes by FeIII-TPA (TPA = tris(2-pyridylmethyl)amine) complexes with alkyl hydroperoxides to Ru-pyridylamine complexes which can be converted to RuIV-oxo complexes in different spin states (S = 1 or 0) through proton-coupled electron-transfer oxidation of the corresponding RuII-aqua complexes, clarifying that those spin states do not affect the reactivity in water. The introduction of strongly donating N-heterocyclic carbene (NHC) moiety allows us to create a RuIII-oxyl complex showing different reactivity from that of RuIV-oxo complexes. Manipulation of second coordination spheres (SCSs) of Ru-TPA complexes is also described, visualizing unique functionality. The introduction of hydrophobic SCS to a FeII-NHC complex enables to catalyze selective oxidation of methane to form methanol in high selectivity in aqueous media based on the "catch-and-release" strategy, which can also allow us to achieve highly selective two-electron oxidation of aromatic compounds.
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Affiliation(s)
- Takahiko Kojima
- Department of Chemistry, Faculty of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennoudai, Tsukuba, Ibaraki 305-8571, Japan.
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2
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Albert T, Pence N, Zhong F, Pletneva EV, Moënne-Loccoz P. A single outer-sphere amino-acid substitution turns on the NO reactivity of a hemerythrin-like protein. Chem Sci 2025; 16:3238-3245. [PMID: 39840292 PMCID: PMC11744678 DOI: 10.1039/d4sc07529c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2024] [Accepted: 01/07/2025] [Indexed: 01/23/2025] Open
Abstract
Mycobacterial hemerythrin-like proteins (HLPs) are important for the survival of pathogens in macrophages. Their molecular mechanisms of function remain poorly defined but recent studies point to their possible role in nitric oxide (NO) scavenging. Unlike any nonheme diiron protein studied so far, the diferric HLP from Mycobacterium kansasii (Mka-HLP) reacts with NO in a multistep fashion to consume four NO molecules per diiron center. HLPs are largely conserved across mycobacteria and we argued that comparative studies of distant orthologs may illuminate the role of the protein scaffold in this reactivity and yield intermediates with properties more favorable for detailed spectroscopic characterization. Herein, we show that HLP from Azotobacter vinelandii (Avi-HLP) requires a single T47F point mutation in the outer sphere of its diferric center to adopt a bridging μ-oxo diferric structure as in Mka-HLP and makes it reactive toward NO. Radical combination of NO with the μ-oxo bridge yields nitrite and a mixed valent Fe(iii)Fe(ii) cluster that further react with NO to produce a stable magnetically coupled Fe(iii){FeNO}7 cluster. We report characterization of this stable cluster by electronic absorption, EPR, FTIR and resonance Raman spectroscopies and suggest ways Phe 46 (Mka numbering) might control the Fe(iii) reduction potential and the NO reactivity of HLPs.
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Affiliation(s)
- Therese Albert
- Department of Chemical Physiology and Biochemistry, School of Medicine, Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland Oregon 97239 USA
| | - Natasha Pence
- Department of Chemistry, Dartmouth College Hanover New Hampshire 03755 USA
| | - Fangfang Zhong
- Department of Chemistry, Dartmouth College Hanover New Hampshire 03755 USA
| | | | - Pierre Moënne-Loccoz
- Department of Chemical Physiology and Biochemistry, School of Medicine, Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland Oregon 97239 USA
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3
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Xu Y, Shen X, Guo S, Lv Y, Wang K, Shi Y, Li Y, Yan M, Zhang P, Dai S, Lu K, Xie P. Iron Oxide Clusters as Electron Donors Under Light Enhance Oxygen Reduction Kinetics at Atomically Dispersed Fe for Photocatalytic CH 4 Partial Oxidation. Angew Chem Int Ed Engl 2025; 64:e202419075. [PMID: 39388342 DOI: 10.1002/anie.202419075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2024] [Revised: 10/09/2024] [Accepted: 10/10/2024] [Indexed: 10/12/2024]
Abstract
Photocatalytic CH4 oxidation to CH3OH emerges as a promising strategy to sustainably utilize natural gas and mitigate the greenhouse effect. However, there remains a significant challenge for the synthesis of methanol by using O2 at low temperature. Inspired by the catalytic structure in soluble methane monooxygenase (MMO) and the corresponding reaction mechanism, we prepared a biomimetic photocatalyst with the decoration of Fe2O3 nanoclusters and satellite Fe single atoms immobilized on carbon nitride. The catalyst demonstrates an excellent CH3OH productivity of 5.02 mmol ⋅ gcat -1 ⋅ h-1 with CH3OH selectivity of 98.5 %. Mechanism studies reveal that the synergy between Fe2O3 nanoclusters and Fe single atoms establishes a dual-Fe site as MMO for O2 activation and subsequent CH4 partial oxidation. Moreover, the light excitation of Fe2O3 nanoclusters with a relative narrow band gap could deliver the electrons and protons to atomic Fe that facilitating the oxygen reduction kinetics for the robust of CH3OH synthesis.
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Affiliation(s)
- Yueyuan Xu
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Xianfeng Shen
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Shuai Guo
- State Key Laboratory of Coal Conversion, Institute of Coal Chemistry, Chinese Academy of Sciences, Taiyuan, Shanxi 030001, P.R. China
| | - Yao Lv
- Key Laboratory for Advanced Materials, Feringa Nobel Prize Scientist Joint Research Center, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, China
| | - Ke Wang
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Yao Shi
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Yukun Li
- State Center for International Cooperation on Designer Low-Carbon and Environmental Materials School of Materials, School of Materials Science and Engineering, Zhengzhou University, Zhengzhou, 450001, China
| | - Mi Yan
- State Key Laboratory of Silicon Materials, School of Materials Science and Engineering, Zhejiang University, Hangzhou, 310058, China
| | - Peng Zhang
- State Center for International Cooperation on Designer Low-Carbon and Environmental Materials School of Materials, School of Materials Science and Engineering, Zhengzhou University, Zhengzhou, 450001, China
| | - Sheng Dai
- Key Laboratory for Advanced Materials, Feringa Nobel Prize Scientist Joint Research Center, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, China
| | - Kuan Lu
- State Key Laboratory of Coal Conversion, Institute of Coal Chemistry, Chinese Academy of Sciences, Taiyuan, Shanxi 030001, P.R. China
| | - Pengfei Xie
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China
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4
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Li RN, Chen SL. Recent Insights into the Reaction Mechanisms of Non-Heme Diiron Enzymes Containing Oxoiron(IV) Complexes. Chembiochem 2025; 26:e202400788. [PMID: 39508533 DOI: 10.1002/cbic.202400788] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2024] [Revised: 11/05/2024] [Accepted: 11/06/2024] [Indexed: 11/15/2024]
Abstract
Oxoiron(IV) complexes are key intermediates in the catalytic reactions of some non-heme diiron enzymes. These enzymes, across various subfamilies, activate dioxygen to generate high-valent diiron-oxo species, which, in turn, drive the activation of substrates and mediate a variety of challenging oxidative transformations. In this review, we summarize the structures, formation mechanisms, and functions of high-valent diiron-oxo intermediates in eight representative diiron enzymes (sMMO, RNR, ToMO, MIOX, PhnZ, SCD1, AlkB, and SznF) spanning five subfamilies. We also categorize and analyze the structural and mechanistic differences among these enzymes.
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Affiliation(s)
- Rui-Ning Li
- Key Laboratory of Cluster Science of Ministry of Education, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing, 100081, China
| | - Shi-Lu Chen
- Key Laboratory of Cluster Science of Ministry of Education, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing, 100081, China
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5
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Lee HB, Ciolkowski N, Field M, Marchiori DA, Britt RD, Green MT, Rittle J. In Crystallo O 2 Cleavage at a Preorganized Triiron Cluster. J Am Chem Soc 2025; 147:770-779. [PMID: 39718446 DOI: 10.1021/jacs.4c13492] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2024]
Abstract
In Nature, the four-electron reduction of O2 is catalyzed at preorganized multimetallic active sites. These complex active sites often feature low-coordinate, redox-active metal centers precisely positioned to facilitate rapid O2 activation processes that obviate the generation of toxic, partially reduced oxygen species. Very few biomimetic constructs simultaneously recapitulate the complexity and reactivity of these biological cofactors. Herein, we report solid-state O2 activation at a triiron(II) active site templated by phosphinimide ligands. Insight into the structure of the O2 reduction intermediates was obtained via in crystallo O2 dosing experiments in conjunction with spectroscopic, structural, magnetic, and computational studies. These data support the in situ formation of an Fe2IIIFeIV-dioxo intermediate upon exposure to O2 that participates in oxygen atom and hydrogen atom transfer reactivity with exogenous substrates to furnish a stable FeIIFe2III-oxo species. Combined, these studies provide an extraordinary level of detail into the dynamics of bond-forming and -breaking processes operative at complex multimetallic active sites.
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Affiliation(s)
- Heui Beom Lee
- Department of Chemistry, University of California Berkeley, Berkeley, California 94720, United States
| | - Nicholas Ciolkowski
- Department of Chemistry, University of California Berkeley, Berkeley, California 94720, United States
| | - Mackenzie Field
- Department of Chemistry and Department of Molecular Biology and Biochemistry, University of California, Irvine, California 92697, United States
| | - David A Marchiori
- Department of Chemistry, University of California Davis, Davis, California 95616, United States
| | - R David Britt
- Department of Chemistry, University of California Davis, Davis, California 95616, United States
| | - Michael T Green
- Department of Chemistry and Department of Molecular Biology and Biochemistry, University of California, Irvine, California 92697, United States
| | - Jonathan Rittle
- Department of Chemistry, University of California Berkeley, Berkeley, California 94720, United States
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6
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Hunter NH, Thomas CM. Polarized metal-metal multiple bonding and reactivity of phosphinoamide-bridged heterobimetallic group IV/cobalt compounds. Dalton Trans 2024; 53:15764-15781. [PMID: 39224084 DOI: 10.1039/d4dt02064b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/04/2024]
Abstract
Heterobimetallic complexes are studied for their ability to mimic biological systems as well as active sites in heterogeneous catalysts. While specific interest in early/late heterobimetallic systems has fluctuated, they serve as important models to fundamentally understand metal-metal bonding. Specifically, the polarized metal-metal multiple bonds formed in highly reduced early/late heterobimetallic complexes exemplify how each metal modulates the electronic environment and reactivity of the complex as a whole. In this Perspective, we chronicle the development of phosphinoamide-supported group IV/cobalt heterobimetallic complexes. This combination of metals allows access to a low valent Co-I center, which performs a rich variety of bond activation reactions when coupled with the pendent Lewis acidic metal center. Conversely, the low valent late transition metal is also observed to act as an electron reservoir, allowing for redox processes to occur at the d0 group IV metal site. Most of the bond activation reactions carried out by phosphinoamide-bridged M/Co-I (M = Ti, Zr, Hf) complexes are facilitated by cleavage of metal-metal multiple bonds, which serve as readily accessible electron reservoirs. Comparative studies in which both the number of buttressing ligands as well as the identity of the early metal were varied to give a library of heterobimetallic complexes are summarized, providing a thorough understanding of the reactivity of M/Co-I heterobimetallic systems.
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Affiliation(s)
- Nathanael H Hunter
- Department of Chemistry and Biochemistry, The Ohio State University, 100 W, 18th Ave, Columbus, OH 43210, USA.
| | - Christine M Thomas
- Department of Chemistry and Biochemistry, The Ohio State University, 100 W, 18th Ave, Columbus, OH 43210, USA.
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7
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Török P, Lakk-Bogáth D, Unjaroen D, Browne WR, Kaizer J. Effect of monodentate heterocycle co-ligands on the μ-1,2-peroxo-diiron(III) mediated aldehyde deformylation reactions. J Inorg Biochem 2024; 258:112620. [PMID: 38824901 DOI: 10.1016/j.jinorgbio.2024.112620] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2024] [Revised: 05/17/2024] [Accepted: 05/25/2024] [Indexed: 06/04/2024]
Abstract
Peroxo-diiron(III) species are present in the active sites of many metalloenzymes that carry out challenging organic transformations. The reactivity of these species is influenced by various factors, such as the structure and topology of the supporting ligands, the identity of the axial and equatorial co-ligands, and the oxidation states of the metal ion(s). In this study, we aim to diversify the importance of equatorial ligands in controlling the reactivity of peroxo-diiron(III) species. As a model compound, we chose the previously published and fully characterized [(PBI)2(CH3CN)FeIII(μ-O2)FeIII(CH3CN)(PBI)2]4+ complex, where the steric effect of the four PBI ligands is minimal, so the labile CH3CN molecules easily can be replaced by different monodentate co-ligands (substituted pyridines and N-donor heterocyclic compounds). Thus, their effect on the electronic and spectral properties of peroxo-divas(III) intermediates could be easily investigated. The relationship between structure and reactivity was also investigated in the stoichiometric deformylation of PPA mediated by peroxo-diiron(III) complexes. It was found that the deformylation rates are influenced by the Lewis acidity and redox properties of the metal centers, and showed a linear correlation with the FeIII/FeII redox potentials (in the range of 197 to 415 mV).
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Affiliation(s)
- Patrik Török
- Research Group of Bioorganic and Biocoordination Chemistry, Universtiy of Pannonia, 8201 Veszprém, Hungary
| | - Dóra Lakk-Bogáth
- Research Group of Bioorganic and Biocoordination Chemistry, Universtiy of Pannonia, 8201 Veszprém, Hungary
| | - Duenpen Unjaroen
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG Groningen, the Netherlands
| | - Wesley R Browne
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG Groningen, the Netherlands.
| | - József Kaizer
- Research Group of Bioorganic and Biocoordination Chemistry, Universtiy of Pannonia, 8201 Veszprém, Hungary.
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8
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Baumberger CL, Valley VZ, Chambers MB. Direct photocatalytic C-H functionalization mediated by a molybdenum dioxo complex. Chem Commun (Camb) 2024; 60:6901-6904. [PMID: 38888147 DOI: 10.1039/d4cc01789g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/20/2024]
Abstract
Direct photocatalytic C-H activation mediated by MoO2Cl2(bpy-tBu), a unique photoactive metal OXO, is presented. The limiting step, reoxidation to the Mo dioxo, is evaluated and proposed to occur via a key Cl- loss event. Photocatalyst degradation occurs upon substitution of bpy-tBu with H2O generated during catalysis.
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Affiliation(s)
- Courtney L Baumberger
- Department of Chemistry, Louisiana State University, Baton Rouge, LA 70803-1804, USA.
| | - Victoria Z Valley
- Department of Chemistry, Louisiana State University, Baton Rouge, LA 70803-1804, USA.
| | - Matthew B Chambers
- Department of Chemistry, Louisiana State University, Baton Rouge, LA 70803-1804, USA.
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9
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Siegbahn PEM. Mechanisms for Methane and Ammonia Oxidation by Particulate Methane Monooxygenase. J Phys Chem B 2024; 128:5840-5845. [PMID: 38850249 PMCID: PMC11194816 DOI: 10.1021/acs.jpcb.4c01807] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2024] [Revised: 05/18/2024] [Accepted: 05/28/2024] [Indexed: 06/10/2024]
Abstract
Particulate MMO (pMMO) catalyzes the oxidation of methane to methanol and also ammonia to hydroxylamine. Experimental characterization of the active site has been very difficult partly because the enzyme is membrane-bound. However, recently, there has been major progress mainly through the use of cryogenic electron microscopy (cryoEM). Electron paramagnetic resonance (EPR) and X-ray spectroscopy have also been employed. Surprisingly, the active site has only one copper. There are two histidine ligands and one asparagine ligand, and the active site is surrounded by phenyl alanines but no charged amino acids in the close surrounding. The present study is the first quantum chemical study using a model of that active site (CuD). Low barrier mechanisms have been found, where an important part is that there are two initial proton-coupled electron transfer steps to a bound O2 ligand before the substrate enters. Surprisingly, this leads to large radical character for the oxygens even though they are protonated. That result is very important for the ability to accept a proton from the substrates. Methods have been used which have been thoroughly tested for redox enzyme mechanisms.
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Affiliation(s)
- Per E. M. Siegbahn
- Department of Organic Chemistry,
Arrhenius Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden
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10
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Tucci FJ, Rosenzweig AC. Direct Methane Oxidation by Copper- and Iron-Dependent Methane Monooxygenases. Chem Rev 2024; 124:1288-1320. [PMID: 38305159 PMCID: PMC10923174 DOI: 10.1021/acs.chemrev.3c00727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2024]
Abstract
Methane is a potent greenhouse gas that contributes significantly to climate change and is primarily regulated in Nature by methanotrophic bacteria, which consume methane gas as their source of energy and carbon, first by oxidizing it to methanol. The direct oxidation of methane to methanol is a chemically difficult transformation, accomplished in methanotrophs by complex methane monooxygenase (MMO) enzyme systems. These enzymes use iron or copper metallocofactors and have been the subject of detailed investigation. While the structure, function, and active site architecture of the copper-dependent particulate methane monooxygenase (pMMO) have been investigated extensively, its putative quaternary interactions, regulation, requisite cofactors, and mechanism remain enigmatic. The iron-dependent soluble methane monooxygenase (sMMO) has been characterized biochemically, structurally, spectroscopically, and, for the most part, mechanistically. Here, we review the history of MMO research, focusing on recent developments and providing an outlook for future directions of the field. Engineered biological catalysis systems and bioinspired synthetic catalysts may continue to emerge along with a deeper understanding of the molecular mechanisms of biological methane oxidation. Harnessing the power of these enzymes will necessitate combined efforts in biochemistry, structural biology, inorganic chemistry, microbiology, computational biology, and engineering.
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Affiliation(s)
- Frank J Tucci
- Departments of Molecular Biosciences and of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Amy C Rosenzweig
- Departments of Molecular Biosciences and of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
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11
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Yang B, Song X, Wang B. DFT mechanistic study of biomimetic diiron complex catalyzed dehydrogenation: Unexpected Fe(III)Fe(III)-1,1-μ-hydroperoxy active species for hydride abstraction. J Inorg Biochem 2024; 251:112426. [PMID: 37980877 DOI: 10.1016/j.jinorgbio.2023.112426] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Revised: 11/03/2023] [Accepted: 11/07/2023] [Indexed: 11/21/2023]
Abstract
The diiron active site is pivotal in catalyzing transformations in both biological and chemical systems. Recently, a range of biomimetic diiron catalysts have been synthesized, drawing inspiration from the active architecture of soluble methane monooxygenase (sMMO). These catalysts have been successfully deployed for the dehydrogenation of indolines, marking a significant advancement in the field. Using density functional theory (DFT) calculations, we have identified a novel mechanistic pathway that governs the dehydrogenation of indolines catalyzed by a biomimetic diiron complex. Specifically, this reaction is facilitated by the transfer of a hybrid atom from the C1 position of the substrate to the distal oxygen atom of the Fe(III)Fe(III)-1,1-μ-hydroperoxy active species. This transfer serves as the rate-limiting step for the heterolytic cleavage of the OO bond, ultimately generating the substrate cation. The mechanism we propose aligns well with mechanistic investigations incorporating both kinetic isotope effect (KIE) measurements and evaluations of stereochemical selectivity. This research contributes to the broader scientific understanding of catalysis involving biomimetic diiron complexes and offers valuable insights into the catalytic behaviors of non-heme diiron metalloenzymes.
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Affiliation(s)
- Boxuan Yang
- Key Laboratory of Chemical Biology of Fujian Province, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Xitong Song
- Fujian Provincial Key Laboratory of Ecology-Toxicological Effects & Control for Emerging Contaminants, College of Environmental and Biological Engineering, Putian University, Putian 351100, China; Key Laboratory of Ecological Environment and Information Atlas, Fujian Provincial University (Putian University), Putian 351100, China
| | - Binju Wang
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China.
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12
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Kumar M, Gupta MK, Ansari M, Ansari A. C-H bond activation by high-valent iron/cobalt-oxo complexes: a quantum chemical modeling approach. Phys Chem Chem Phys 2024; 26:4349-4362. [PMID: 38235511 DOI: 10.1039/d3cp05866b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2024]
Abstract
High-valent metal-oxo species serve as key intermediates in the activation of inert C-H bonds. Here, we present a comprehensive DFT analysis of the parameters that have been proposed as influencing factors in modeled high-valent metal-oxo mediated C-H activation reactions. Our approach involves utilizing DFT calculations to explore the electronic structures of modeled FeIVO (species 1) and CoIVO ↔ CoIII-O˙ (species 2), scrutinizing their capacity to predict improved catalytic activity. DFT and DLPNO-CCSD(T) calculations predict that the iron-oxo species possesses a triplet as the ground state, while the cobalt-oxo has a doublet as the ground state. Furthermore, we have investigated the mechanistic pathways for the first C-H bond activation, as well as the desaturation of the alkanes. The mechanism was determined to be a two-step process, wherein the first hydrogen atom abstraction (HAA) represents the rate-limiting step, involving the proton-coupled electron transfer (PCET) process. However, we found that the second HAA step is highly exothermic for both species. Our calculations suggest that the iron-oxo species (Fe-O = 1.672 Å) exhibit relatively sluggish behavior compared to the cobalt-oxo species (Co-O = 1.854 Å) in C-H bond activation, attributed to a weak metal-oxygen bond. MO, NBO, and deformation energy analysis reveal the importance of weakening the M-O bond in the cobalt species, thereby reducing the overall barrier to the reaction. This catalyst was found to have a C-H activation barrier relatively smaller than that previously reported in the literature.
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Affiliation(s)
- Manjeet Kumar
- Department of Chemistry, Central University of Haryana, Mahendergarh-123031, Haryana, India.
| | - Manoj Kumar Gupta
- Department of Chemistry, Central University of Haryana, Mahendergarh-123031, Haryana, India.
| | - Mursaleem Ansari
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany.
| | - Azaj Ansari
- Department of Chemistry, Central University of Haryana, Mahendergarh-123031, Haryana, India.
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13
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Kajita Y, Kubo M, Arii H, Ishikawa S, Saito Y, Wasada-Tsutsui Y, Funahashi Y, Ozawa T, Masuda H. Preparations of trans- and cis- μ-1,2-Peroxodiiron(III) Complexes. Molecules 2023; 29:205. [PMID: 38202788 PMCID: PMC10780643 DOI: 10.3390/molecules29010205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Revised: 12/20/2023] [Accepted: 12/28/2023] [Indexed: 01/12/2024] Open
Abstract
The iron(II) complex with cis,cis-1,3,5-tris(benzylamino)cyclohexane (Bn3CY) (1) has been synthesized and characterized, which reacted with dioxygen to form the peroxo complex 2 in acetone at -60 °C. On the basis of spectroscopic measurements for 2, it was confirmed that the peroxo complex 2 has a trans-μ-1,2 fashion. Additionally, the peroxo complex 2 was reacted with benzoate anion as a bridging agent to give a peroxo complex 3. The results of resonance Raman and 1H-NMR studies supported that the peroxo complex 3 is a cis-μ-1,2-peroxodiiron(III) complex. These spectral features were interpreted by using DFT calculations.
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Affiliation(s)
- Yuji Kajita
- Department of Applied Chemistry, Graduate School of Engineering, Aichi Institute of Technology, 1247 Yachigusa, Yakusa-cho, Toyota 470-0392, Japan;
| | - Masaki Kubo
- Department of Frontier Materials, Graduate School of Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan; (M.K.); (Y.W.-T.); (T.O.)
| | - Hidekazu Arii
- Department of Education, Graduate School of Education, University of Miyazaki, Gakuenkibanadai-Nishi, Miyazaki 889-2192, Japan;
| | - Shinya Ishikawa
- Department of Frontier Materials, Graduate School of Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan; (M.K.); (Y.W.-T.); (T.O.)
| | - Yamato Saito
- Department of Frontier Materials, Graduate School of Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan; (M.K.); (Y.W.-T.); (T.O.)
| | - Yuko Wasada-Tsutsui
- Department of Frontier Materials, Graduate School of Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan; (M.K.); (Y.W.-T.); (T.O.)
| | - Yasuhiro Funahashi
- Department of Chemistry, Graduate School of Science, Osaka University, Machikaneyama, Toyonaka, Osaka 560-0043, Japan;
| | - Tomohiro Ozawa
- Department of Frontier Materials, Graduate School of Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan; (M.K.); (Y.W.-T.); (T.O.)
| | - Hideki Masuda
- Department of Applied Chemistry, Graduate School of Engineering, Aichi Institute of Technology, 1247 Yachigusa, Yakusa-cho, Toyota 470-0392, Japan;
- Department of Frontier Materials, Graduate School of Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan; (M.K.); (Y.W.-T.); (T.O.)
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14
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Woern C, Grossmann L. Microbial gas fermentation technology for sustainable food protein production. Biotechnol Adv 2023; 69:108240. [PMID: 37647973 DOI: 10.1016/j.biotechadv.2023.108240] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Revised: 08/16/2023] [Accepted: 08/21/2023] [Indexed: 09/01/2023]
Abstract
The development of novel, sustainable, and robust food production technologies represents one of the major pillars to address the most significant challenges humanity is going to face on earth in the upcoming decades - climate change, population growth, and resource depletion. The implementation of microfoods, i.e., foods formulated with ingredients from microbial cultivation, into the food supply chain has a huge potential to contribute towards energy-efficient and nutritious food manufacturing and represents a means to sustainably feed a growing world population. This review recapitulates and assesses the current state in the establishment and usage of gas fermenting bacteria as an innovative feedstock for protein production. In particular, we focus on the most promising representatives of this taxon: the hydrogen-oxidizing bacteria (hydrogenotrophs) and the methane-oxidizing bacteria (methanotrophs). These unicellular microorganisms can aerobically metabolize gaseous hydrogen and methane, respectively, to provide the required energy for building up cell material. A protein yield over 70% in the dry matter cell mass can be reached with no need for arable land and organic substrates making it a promising alternative to plant- and animal-based protein sources. We illuminate the holistic approach to incorporate protein extracts obtained from the cultivation of gas fermenting bacteria into microfoods. Herein, the fundamental properties of the bacteria, cultivation methods, downstream processing, and potential food applications are discussed. Moreover, this review covers existing and future challenges as well as sustainability aspects associated with the production of microbial protein through gas fermentation.
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Affiliation(s)
- Carlos Woern
- Department of Food Science, University of Massachusetts, Amherst, MA 01003, USA
| | - Lutz Grossmann
- Department of Food Science, University of Massachusetts, Amherst, MA 01003, USA.
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15
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Iaia EP, Soyemi A, Szilvási T, Harris JW. Zeolite encapsulated organometallic complexes as model catalysts. Dalton Trans 2023; 52:16103-16112. [PMID: 37812079 DOI: 10.1039/d3dt02126b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/10/2023]
Abstract
Heterogeneities in the structure of active centers in metal-containing porous materials are unavoidable and complicate the description of chemical events occurring along reaction coordinates at the atomic level. Metal containing zeolites include sites of varied local coordination and secondary confining environments, requiring careful titration protocols to quantify the predominant active sites. Hybrid organometallic-zeolite catalysts are useful well-defined platform materials for spectroscopic, kinetic, and computational studies of heterogeneous catalysis that avoid the complications of conventional metal-containing porous materials. Such materials have been synthesized and studied previously, but catalytic applications were mostly limited to liquid-phase oxidation and electrochemical reactions. The hydrothermal stability, time-on-stream stability, and utility of these materials in gas-phase oxidation reactions are under-studied. The potential applications for single-site heterogeneous catalysts in fundamental research are abundant and motivate future synthetic, spectroscopic, kinetic, and computational studies.
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Affiliation(s)
- Ethan P Iaia
- Department of Chemical and Biological Engineering, The University of Alabama, Tuscaloosa, AL, 35487, USA.
| | - Ademola Soyemi
- Department of Chemical and Biological Engineering, The University of Alabama, Tuscaloosa, AL, 35487, USA.
| | - Tibor Szilvási
- Department of Chemical and Biological Engineering, The University of Alabama, Tuscaloosa, AL, 35487, USA.
| | - James W Harris
- Department of Chemical and Biological Engineering, The University of Alabama, Tuscaloosa, AL, 35487, USA.
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16
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Galeotti M, Lee W, Sisti S, Casciotti M, Salamone M, Houk KN, Bietti M. Radical and Cationic Pathways in C( sp3)-H Bond Oxygenation by Dioxiranes of Bicyclic and Spirocyclic Hydrocarbons Bearing Cyclopropane Moieties. J Am Chem Soc 2023; 145:24021-24034. [PMID: 37874906 PMCID: PMC10636757 DOI: 10.1021/jacs.3c07163] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Revised: 10/03/2023] [Accepted: 10/04/2023] [Indexed: 10/26/2023]
Abstract
A product and DFT computational study on the reactions of 3-ethyl-3-(trifluoromethyl)dioxirane (ETFDO) with bicyclic and spirocyclic hydrocarbons bearing cyclopropyl groups was carried out. With bicyclo[n.1.0]alkanes (n = 3-6), diastereoselective formation of the alcohol product derived from C2-H bond hydroxylation was observed, accompanied by smaller amounts of products derived from oxygenation at other sites. With 1-methylbicyclo[4.1.0]heptane, rearranged products were also observed in addition to the unrearranged products deriving from oxygenation at the most activated C2-H and C5-H bonds. With spiro[2.5]octane and 6-tert-butylspiro[2.5]octane, reaction with ETFDO occurred predominantly or exclusively at the axial C4-H to give unrearranged oxygenation products, accompanied by smaller amounts of rearranged bicyclo[4.2.0]octan-1-ols. The good to outstanding site-selectivities and diastereoselectivities are paralleled by the calculated activation free energies for the corresponding reaction pathways. Computations show that the σ* orbitals of the bicyclo[n.1.0]alkane cis or trans C2-H bonds and spiro[2.5]octanes axial C4-H bond hyperconjugatively interact with the Walsh orbitals of the cyclopropane ring, activating these bonds toward HAT to ETFDO. The detection of rearranged oxygenation products in the oxidation of 1-methylbicyclo[4.1.0]heptane, spiro[2.5]octane, and 6-tert-butylspiro[2.5]octane provides unambiguous evidence for the involvement of cationic intermediates in these reactions, representing the first examples on the operation of ET pathways in dioxirane-mediated C(sp3)-H bond oxygenations. Computations support these findings, showing that formation of cationic intermediates is associated with specific stabilizing hyperconjugative interactions between the incipient carbon radical and the cyclopropane C-C bonding orbitals that trigger ET to the incipient dioxirane derived 1,1,1-trifluoro-2-hydroxy-2-butoxyl radical.
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Affiliation(s)
- Marco Galeotti
- Dipartimento
di Scienze e Tecnologie Chimiche, Università
“Tor Vergata”, Via della Ricerca Scientifica 1, I-00133, Rome, Italy
- QBIS
Research Group, Institut de Química Computacional i Catàlisi
(IQCC) and Departament de Química, Universitat de Girona, Campus Montilivi, Girona E-17071, Catalonia, Spain
| | - Woojin Lee
- Department
of Chemistry and Biochemistry, University
of California, Los Angeles, California 90095, United States
| | - Sergio Sisti
- Dipartimento
di Scienze e Tecnologie Chimiche, Università
“Tor Vergata”, Via della Ricerca Scientifica 1, I-00133, Rome, Italy
| | - Martina Casciotti
- Dipartimento
di Scienze e Tecnologie Chimiche, Università
“Tor Vergata”, Via della Ricerca Scientifica 1, I-00133, Rome, Italy
| | - Michela Salamone
- Dipartimento
di Scienze e Tecnologie Chimiche, Università
“Tor Vergata”, Via della Ricerca Scientifica 1, I-00133, Rome, Italy
| | - K. N. Houk
- Department
of Chemistry and Biochemistry, University
of California, Los Angeles, California 90095, United States
| | - Massimo Bietti
- Dipartimento
di Scienze e Tecnologie Chimiche, Università
“Tor Vergata”, Via della Ricerca Scientifica 1, I-00133, Rome, Italy
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17
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Yamaguchi K, Isobe H, Shoji M, Kawakami T, Miyagawa K. The Nature of the Chemical Bonds of High-Valent Transition-Metal Oxo (M=O) and Peroxo (MOO) Compounds: A Historical Perspective of the Metal Oxyl-Radical Character by the Classical to Quantum Computations. Molecules 2023; 28:7119. [PMID: 37894598 PMCID: PMC10609222 DOI: 10.3390/molecules28207119] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Revised: 10/08/2023] [Accepted: 10/10/2023] [Indexed: 10/29/2023] Open
Abstract
This review article describes a historical perspective of elucidation of the nature of the chemical bonds of the high-valent transition metal oxo (M=O) and peroxo (M-O-O) compounds in chemistry and biology. The basic concepts and theoretical backgrounds of the broken-symmetry (BS) method are revisited to explain orbital symmetry conservation and orbital symmetry breaking for the theoretical characterization of four different mechanisms of chemical reactions. Beyond BS methods using the natural orbitals (UNO) of the BS solutions, such as UNO CI (CC), are also revisited for the elucidation of the scope and applicability of the BS methods. Several chemical indices have been derived as the conceptual bridges between the BS and beyond BS methods. The BS molecular orbital models have been employed to explain the metal oxyl-radical character of the M=O and M-O-O bonds, which respond to their radical reactivity. The isolobal and isospin analogy between carbonyl oxide R2C-O-O and metal peroxide LFe-O-O has been applied to understand and explain the chameleonic chemical reactivity of these compounds. The isolobal and isospin analogy among Fe=O, O=O, and O have also provided the triplet atomic oxygen (3O) model for non-heme Fe(IV)=O species with strong radical reactivity. The chameleonic reactivity of the compounds I (Cpd I) and II (Cpd II) is also explained by this analogy. The early proposals obtained by these theoretical models have been examined based on recent computational results by hybrid DFT (UHDFT), DLPNO CCSD(T0), CASPT2, and UNO CI (CC) methods and quantum computing (QC).
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Affiliation(s)
- Kizashi Yamaguchi
- SANKEN, Osaka University, Ibaraki 567-0047, Osaka, Japan
- Center for Quantum Information and Quantum Biology (QIQB), Osaka University, Toyonaka 560-0043, Osaka, Japan
| | - Hiroshi Isobe
- Research Institute for Interdisciplinary Science, Okayama University, Okayama 700-8530, Okayama, Japan;
| | - Mitsuo Shoji
- Center for Computational Sciences, University of Tsukuba, Tsukuba 305-8577, Ibaraki, Japan; (M.S.); (K.M.)
| | - Takashi Kawakami
- Department of Chemistry, Graduate School of Science, Osaka University, Toyonaka 560-0043, Osaka, Japan;
| | - Koichi Miyagawa
- Center for Computational Sciences, University of Tsukuba, Tsukuba 305-8577, Ibaraki, Japan; (M.S.); (K.M.)
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18
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Tofoni A, Tavani F, Vandone M, Braglia L, Borfecchia E, Ghigna P, Stoian DC, Grell T, Stolfi S, Colombo V, D’Angelo P. Full Spectroscopic Characterization of the Molecular Oxygen-Based Methane to Methanol Conversion over Open Fe(II) Sites in a Metal-Organic Framework. J Am Chem Soc 2023; 145:21040-21052. [PMID: 37721732 PMCID: PMC10540213 DOI: 10.1021/jacs.3c07216] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Indexed: 09/19/2023]
Abstract
Iron-based enzymes efficiently activate molecular oxygen to perform the oxidation of methane to methanol (MTM), a reaction central to the contemporary chemical industry. Conversely, a very limited number of artificial catalysts have been devised to mimic this process. Herein, we employ the MIL-100(Fe) metal-organic framework (MOF), a material that exhibits isolated Fe sites, to accomplish the MTM conversion using O2 as the oxidant under mild conditions. We apply a diverse set of advanced operando X-ray techniques to unveil how MIL-100(Fe) can act as a catalyst for direct MTM conversion. Single-phase crystallinity and stability of the MOF under reaction conditions (200 or 100 °C, CH4 + O2) are confirmed by X-ray diffraction measurements. X-ray absorption, emission, and resonant inelastic scattering measurements show that thermal treatment above 200 °C generates Fe(II) sites that interact with O2 and CH4 to produce methanol. Experimental evidence-driven density functional theory (DFT) calculations illustrate that the MTM reaction involves the oxidation of the Fe(II) sites to Fe(III) via a high-spin Fe(IV)═O intermediate. Catalyst deactivation is proposed to be caused by the escape of CH3• radicals from the relatively large MOF pore cages, ultimately resulting in the formation of hydroxylated triiron units, as proven by valence-to-core X-ray emission spectroscopy. The O2-based MTM catalytic activity of MIL-100(Fe) in the investigated conditions is demonstrated for two consecutive reaction cycles, proving the MOF potential toward active site regeneration. These findings will desirably lay the groundwork for the design of improved MOF catalysts for the MTM conversion.
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Affiliation(s)
- Alessandro Tofoni
- Dipartimento
di Chimica, Università degli Studi
di Roma “La Sapienza”, P.le A. Moro 5, I-00185 Rome, Italy
| | - Francesco Tavani
- Dipartimento
di Chimica, Università degli Studi
di Roma “La Sapienza”, P.le A. Moro 5, I-00185 Rome, Italy
| | - Marco Vandone
- Dipartimento
di Chimica & UdR INSTM di Milano, Università
degli Studi di Milano, Via Golgi 19, 20133 Milan, Italy
| | - Luca Braglia
- CNR-Istituto
Officina dei Materiali, TASC, 34149 Trieste, Italy
| | - Elisa Borfecchia
- Dipartimento
di Chimica & UdR INSTM di Torino, Università
di Torino, Via P. Giuria
7, 10125 Turin, Italy
| | - Paolo Ghigna
- Dipartimento
di Chimica, Università di Pavia, V.le Taramelli 13, I-27100 Pavia, Italy
| | - Dragos Costantin Stoian
- The Swiss-Norwegian
Beamlines (SNBL), European Synchrotron Radiation Facility, BP 220, 38043 Grenoble, France
| | - Toni Grell
- Dipartimento
di Chimica & UdR INSTM di Milano, Università
degli Studi di Milano, Via Golgi 19, 20133 Milan, Italy
| | - Sara Stolfi
- CNR-Istituto
Officina dei Materiali, TASC, 34149 Trieste, Italy
| | - Valentina Colombo
- Dipartimento
di Chimica & UdR INSTM di Milano, Università
degli Studi di Milano, Via Golgi 19, 20133 Milan, Italy
- CNR
− SCITEC − Istituto di Scienze e Tecnologie Chimiche
“Giulio Natta”, Via Golgi 19, 20133 Milan, Italy
| | - Paola D’Angelo
- Dipartimento
di Chimica, Università degli Studi
di Roma “La Sapienza”, P.le A. Moro 5, I-00185 Rome, Italy
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19
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Sui J, Gao ML, Qian B, Liu C, Pan Y, Meng Z, Yuan D, Jiang HL. Bioinspired microenvironment modulation of metal-organic framework-based catalysts for selective methane oxidation. Sci Bull (Beijing) 2023; 68:1886-1893. [PMID: 37544879 DOI: 10.1016/j.scib.2023.07.031] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Revised: 06/21/2023] [Accepted: 07/07/2023] [Indexed: 08/08/2023]
Abstract
Inspiration from natural enzymes enabling creationary catalyst design is appealing yet remains extremely challenging for selective methane (CH4) oxidation. This study presents the construction of a biomimetic catalyst platform for CH4 oxidation, which is constructed by incorporating Fe-porphyrin into a robust metal-organic framework, UiO-66, furnished with saturated monocarboxylic fatty acid bearing different long alkyl chains. The catalysts demonstrate the high efficiency in the CH4 to methanol (CH3OH) conversion at 50 °C. Moreover, the selectivity to CH3OH can be effectively regulated and promoted through a fine-tuned microenvironment by hydrophobic modification around the Fe-porphyrin. The long-chain fatty acids anchored on the Zr-oxo cluster of UiO-66 can not only tune the electronic state of the Fe sites to improve CH4 adsorption, but also restrict the amount of H2O2 around the Fe sites to reduce the overoxidation. This behavior resembles the microenvironment regulation in methane monooxygenase, resulting in high CH3OH selectivity.
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Affiliation(s)
- Jianfei Sui
- Department of Chemistry, University of Science and Technology of China, Hefei 230026, China
| | - Ming-Liang Gao
- Department of Chemistry, University of Science and Technology of China, Hefei 230026, China
| | - Bing Qian
- National Synchrotron Radiation Laboratory (NSRL), University of Science and Technology of China, Hefei 230029, China
| | - Chengyuan Liu
- National Synchrotron Radiation Laboratory (NSRL), University of Science and Technology of China, Hefei 230029, China
| | - Yang Pan
- National Synchrotron Radiation Laboratory (NSRL), University of Science and Technology of China, Hefei 230029, China
| | - Zheng Meng
- Department of Chemistry, University of Science and Technology of China, Hefei 230026, China.
| | - Daqiang Yuan
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou 350002, China
| | - Hai-Long Jiang
- Department of Chemistry, University of Science and Technology of China, Hefei 230026, China.
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20
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Ajaykamal T, Palaniandavar M. Mononuclear nickel(ii)-flavonolate complexes of tetradentate tripodal 4N ligands as structural and functional models for quercetin 2,4-dioxygenase: structures, spectra, redox and dioxygenase activity. RSC Adv 2023; 13:24674-24690. [PMID: 37601601 PMCID: PMC10436029 DOI: 10.1039/d3ra04834a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 08/01/2023] [Indexed: 08/22/2023] Open
Abstract
Three new nickel(ii)-flavonolate complexes of the type [Ni(L)(fla)](ClO4) 1-3, where L is the tripodal 4N ligand tris(pyrid-2-ylmethyl)amine (tpa, L1) or (pyrid-2-ylmethyl)bis(6-methylpyrid-2-ylmethyl)amine (6-Me2-tpa, L2) or tris(N-Et-benzimidazol-2-ylmethyl)amine (Et-ntb, L3), have been isolated as functional models for Ni(ii)-containing quercetin 2,4-dioxygenase. Single crystal X-ray structures of 1 and 3 reveal that Ni(ii) is involved in π-back bonding with flavonolate (fla-), as evident from enhancement in C[double bond, length as m-dash]O bond length upon coordination [H(fla), 1.232(3); 1, 1.245(7); 3, 1.262(8) Å]. More asymmetric chelation of fla- in 3 than in 1 [Δd = (Ni-Ocarbonyl - Ni-Oenolate): 1, 0.126; 3, 0.182 Å] corresponds to lower π-delocalization in 3 with electron-releasing N-Et substituent. The optimized structures of 1-3 and their geometrical isomers have been computed by DFT methods. The HOMO and LUMO, both localized on Ni(ii)-bound fla-, are highly conjugated bonding π- and antibonding π*-orbitals respectively. They are located higher in energy than the Ni(ii)-based MOs (HOMO-1, dx2-y2; HOMO-2/6, dz2), revealing that the Ni(ii)-bound fla- rather than Ni(ii) would undergo oxidation upon exposure to dioxygen. The results of computational studies, in combination with spectral and electrochemical studies, support the involvement of redox-inactive Ni(ii) in π-back bonding with fla-, tuning the π-delocalization in fla- and hence its activation. Upon exposure to dioxygen, all the flavonolate adducts in DMF solution decompose to produce CO and depside, which then is hydrolyzed to give the corresponding acids at 70 °C. The highest rate of dioxygenase reactivity of 3 (kO2: 3 (29.10 ± 0.16) > 1 (16.67 ± 0.70) > 2 (1.81 ± 0.04 × 10-1 M-1 s-1)), determined by monitoring the disappearance of the LMCT band in the range 440-450 nm, is ascribed to the electron-releasing N-Et substituent on bzim ring, which decreases the π-delocalization in fla- and enhances its activation.
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Affiliation(s)
- Tamilarasan Ajaykamal
- Department of Chemistry, Bharathidasan University Tiruchirapalli 620 024 Tamil Nadu India +91-431-2407043 +91-431-2407125
| | - Mallayan Palaniandavar
- Department of Chemistry, Bharathidasan University Tiruchirapalli 620 024 Tamil Nadu India +91-431-2407043 +91-431-2407125
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21
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Moore SM, Sun C, Steele JL, Laaker EM, Rheingold AL, Doerrer LH. HAA by the first {Mn(iii)OH} complex with all O-donor ligands. Chem Sci 2023; 14:8187-8195. [PMID: 37538819 PMCID: PMC10395311 DOI: 10.1039/d3sc01971c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2023] [Accepted: 07/05/2023] [Indexed: 08/05/2023] Open
Abstract
There is considerable interest in MnOHx moieties, particularly in the stepwise changes in those O-H bonds in tandem with Mn oxidation state changes. The reactivity of aquo-derived ligands, {MOHx}, is also heavily influenced by the electronic character of the other ligands. Despite the prevalence of oxygen coordination in biological systems, preparation of mononuclear Mn complexes of this type with all O-donors is rare. Herein, we report several Mn complexes with perfluoropinacolate (pinF)2- including the first example of a crystallographically characterized mononuclear {Mn(iii)OH} with all O-donors, K2[Mn(OH)(pinF)2], 3. Complex 3 is prepared via deprotonation of K[Mn(OH2)(pinF)2], 1, the pKa of which is estimated to be 18.3 ± 0.3. Cyclic voltammetry reveals quasi-reversible redox behavior for both 1 and 3 with an unusually large ΔEp, assigned to the Mn(iii/ii) couple. Using the Bordwell method, the bond dissociation free energy (BDFE) of the O-H bond in {Mn(ii)-OH2} is estimated to be 67-70 kcal mol-1. Complex 3 abstracts H-atoms from 1,2-diphenylhydrazine, 2,4,6-TTBP, and TEMPOH, the latter of which supports a PCET mechanism. Under basic conditions in air, the synthesis of 1 results in K2[Mn(OAc)(pinF)2], 2, proposed to result from the oxidation of Et2O to EtOAc by a reactive Mn species, followed by ester hydrolysis. Complex 3 alone does not react with Et2O, but addition of O2 at low temperature effects the formation of a new chromophore proposed to be a Mn(iv) species. The related complexes K(18C6)[Mn(iii)(pinF)2], 4, and (Me4N)2[Mn(ii)(pinF)2], 5, have also been prepared and their properties discussed in relation to complexes 1-3.
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Affiliation(s)
- Shawn M Moore
- Boston University, Chemistry Department 590 Commonwealth Avenue Boston Massachusetts 02215 USA
| | - Chen Sun
- Boston University, Chemistry Department 590 Commonwealth Avenue Boston Massachusetts 02215 USA
| | - Jennifer L Steele
- Boston University, Chemistry Department 590 Commonwealth Avenue Boston Massachusetts 02215 USA
| | - Ellen M Laaker
- Boston University, Chemistry Department 590 Commonwealth Avenue Boston Massachusetts 02215 USA
| | - Arnold L Rheingold
- University of California, San Diego Department of Chemistry and Biochemistry 9500 Gilman Drive La Jolla California 92093 USA
| | - Linda H Doerrer
- Boston University, Chemistry Department 590 Commonwealth Avenue Boston Massachusetts 02215 USA
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22
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Andrade LS, Lima HH, Silva CT, Amorim WL, Poço JG, López-Castillo A, Kirillova MV, Carvalho WA, Kirillov AM, Mandelli D. Metal–organic frameworks as catalysts and biocatalysts for methane oxidation: The current state of the art. Coord Chem Rev 2023. [DOI: 10.1016/j.ccr.2023.215042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
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23
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Kim JH, Buyuktemiz M, Alıcı G, Baik MH, Dede Y. The Role of the Redox Non-Innocent Hydroxyl Ligand in the Activation of O 2 Performed by [Ni(H)(OH)] . Chemistry 2023; 29:e202203128. [PMID: 36447369 DOI: 10.1002/chem.202203128] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 11/29/2022] [Accepted: 11/29/2022] [Indexed: 12/05/2022]
Abstract
The cationic complex [Ni(H)(OH)]+ was previously found to activate dioxygen and methane in gas phase under single collision conditions. These remarkable reactivities were thought to originate from a non-classical electronic structure, where the Ni-center adopts a Ni(II), instead of the classically expected Ni(III) oxidation state by formally accepting an electron from the hydroxo ligand, which formally becomes a hydroxyl radical in the process. Such radicaloid oxygen moieties are envisioned to easily react with otherwise inert substrates, mimicking familiar reactivities of free radicals. In this study, the reductive activation of dioxygen by [Ni(H)(OH)]+ to afford the hydroperoxo species was investigated using coupled cluster, multireference ab initio and density functional theory calculations. Orbital and wave function analyses indicate that O2 binding tranforms the aforementioned non-classical electronic structure to a classical Ni(III)-hydroxyl system, before O2 reduction takes place. Remarkably, we found no evidence for a direct involvement of the radicaloid hydroxyl in the reaction with O2 , as is often assumed. The function of the redox non-innocent character of the activator complex is to protect the reactive electronic structure until the complex engages O2 , upon which a dramatic electronic reorganization releases internal energy and drives the chemical reaction to completion.
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Affiliation(s)
- Jun-Hyeong Kim
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea.,Center for Catalytic Hydrocarbon Functionalizations, Institute for Basic Science (IBS), Daejeon, 34141, Republic of Korea
| | - Muhammed Buyuktemiz
- Department of Chemistry, Faculty of Science, Gazi University, Teknikokullar, Ankara, Turkey
| | - Gökçe Alıcı
- Department of Chemistry, Faculty of Science, Gazi University, Teknikokullar, Ankara, Turkey
| | - Mu-Hyun Baik
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea.,Center for Catalytic Hydrocarbon Functionalizations, Institute for Basic Science (IBS), Daejeon, 34141, Republic of Korea
| | - Yavuz Dede
- Department of Chemistry, Faculty of Science, Gazi University, Teknikokullar, Ankara, Turkey
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24
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Chattopadhyay S, Samanta S, Sarkar A, Bhattacharya A, Patra S, Dey A. Silver nanostructure-modified graphite electrode for in-operando SERRS investigation of iron porphyrins during high-potential electrocatalysis. J Chem Phys 2023; 158:044201. [PMID: 36725507 DOI: 10.1063/5.0136333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
In-operando spectroscopic observation of the intermediates formed during various electrocatalytic oxidation and reduction reactions is crucial to propose the mechanism of the corresponding reaction. Surface-enhanced resonance Raman spectroscopy coupled to rotating disk electrochemistry (SERRS-RDE), developed about a decade ago, proved to be an excellent spectroscopic tool to investigate the mechanism of heterogeneous oxygen reduction reaction (ORR) catalyzed by synthetic iron porphyrin complexes under steady-state conditions in water. The information about the formation of the intermediates accumulated during the course of the reaction at the electrode interface helped to develop better ORR catalysts with second sphere residues in the porphyrin rings. To date, the application of this SERRS-RDE setup is limited to ORR only because the thiol self-assembled monolayer (SAM)-modified Ag electrode, used as the working electrode in these experiments, suffers from stability issues at more cathodic and anodic potential, where H2O oxidation, CO2 reduction, and H+ reduction reactions occur. The current investigation shows the development of a second-generation SERRS-RDE setup consisting of an Ag nanostructure (AgNS)-modified graphite electrode as the working electrode. These electrodes show higher stability (compared to the conventional thiol SAM-modified Ag electrode) upon exposure to very high cathodic and anodic potential with a good signal-to-noise ratio in the Raman spectra. The behavior of this modified electrode toward ORR is found to be the same as the SAM-modified Ag electrode, and the same ORR intermediates are observed during electrochemical ORR. At higher cathodic potential, the signatures of Fe(0) porphyrin, an important intermediate in H+ and CO2 reduction reactions, was observed at the electrode-water interface.
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Affiliation(s)
- Samir Chattopadhyay
- School of Chemical Sciences, Indian Association for the Cultivation of Sciences, 2A & 2B Raja S.C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Soumya Samanta
- School of Chemical Sciences, Indian Association for the Cultivation of Sciences, 2A & 2B Raja S.C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Ankita Sarkar
- School of Chemical Sciences, Indian Association for the Cultivation of Sciences, 2A & 2B Raja S.C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Aishik Bhattacharya
- School of Chemical Sciences, Indian Association for the Cultivation of Sciences, 2A & 2B Raja S.C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Suman Patra
- School of Chemical Sciences, Indian Association for the Cultivation of Sciences, 2A & 2B Raja S.C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Abhishek Dey
- School of Chemical Sciences, Indian Association for the Cultivation of Sciences, 2A & 2B Raja S.C. Mullick Road, Jadavpur, Kolkata 700032, India
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25
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Wang Y, Wang J, Wei J, Wang C, Wang H, Yang X. Catalytic Mechanisms and Active Species of Benzene Hydroxylation Reaction System Based on Fe-Based Enzyme-Mimetic Structure. Catal Letters 2022. [DOI: 10.1007/s10562-022-04238-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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26
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Recent progress in oxidation chemistry of high-valent ruthenium-oxo and osmium-oxo complexes and related species. Coord Chem Rev 2022. [DOI: 10.1016/j.ccr.2022.214536] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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27
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Zhou TP, Deng WH, Wu Y, Liao RZ. QM/MM Calculations Suggested Concerted O‒O Bond Cleavage and Substrate Oxidation by Nonheme Diiron Toluene/o‐xylene Monooxygenase. Chem Asian J 2022; 17:e202200490. [DOI: 10.1002/asia.202200490] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Revised: 06/01/2022] [Indexed: 11/06/2022]
Affiliation(s)
- Tai-Ping Zhou
- Huazhong University of Science and Technology School of chemistry and chemical engineering CHINA
| | - Wen-Hao Deng
- Huazhong University of Science and Technology School of chemistry and chemical engineering CHINA
| | - Yuzhou Wu
- Huazhong University of Science and Technology School of chemistry and chemical engineering CHINA
| | - Rong-Zhen Liao
- Huazhong University of Science and technology College of Chemistry and Chemical Engeneering Luoyulu 1037 430074 Wuhan CHINA
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28
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Mahor D, Cong Z, Weissenborn MJ, Hollmann F, Zhang W. Valorization of Small Alkanes by Biocatalytic Oxyfunctionalization. CHEMSUSCHEM 2022; 15:e202101116. [PMID: 34288540 DOI: 10.1002/cssc.202101116] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Revised: 07/18/2021] [Indexed: 06/13/2023]
Abstract
The oxidation of alkanes into valuable chemical products is a vital reaction in organic synthesis. This reaction, however, is challenging, owing to the inertness of C-H bonds. Transition metal catalysts for C-H functionalization are frequently explored. Despite chemical alternatives, nature has also evolved powerful oxidative enzymes (e. g., methane monooxygenases, cytochrome P450 oxygenases, peroxygenases) that are capable of transforming C-H bonds under very mild conditions, with only the use of molecular oxygen or hydrogen peroxide as electron acceptors. Although progress in alkane oxidation has been reviewed extensively, little attention has been paid to small alkane oxidation. The latter holds great potential for the manufacture of chemicals. This Minireview provides a concise overview of the most relevant enzyme classes capable of small alkanes (C<6 ) oxyfunctionalization, describes the essentials of the catalytic mechanisms, and critically outlines the current state-of-the-art in preparative applications.
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Affiliation(s)
- Durga Mahor
- National Innovation Center for Synthetic Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area, Tianjin, 300308, P. R. China
- Indian Institute of Science Education and Research Berhampur, Odisha, 760010, India
| | - Zhiqi Cong
- CAS Key Laboratory of Biofuels and Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology Chinese Academy of Sciences, Qingdao, Shandong, 266101, P. R. China
| | - Martin J Weissenborn
- Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle, Saale), Germany
| | - Frank Hollmann
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629HZ, Delft, The Netherlands
| | - Wuyuan Zhang
- National Innovation Center for Synthetic Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area, Tianjin, 300308, P. R. China
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29
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Nayek A, Ahmed ME, Samanta S, Dinda S, Patra S, Dey SG, Dey A. Bioinorganic Chemistry on Electrodes: Methods to Functional Modeling. J Am Chem Soc 2022; 144:8402-8429. [PMID: 35503922 DOI: 10.1021/jacs.2c01842] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
One of the major goals of bioinorganic chemistry has been to mimic the function of elegant metalloenzymes. Such functional modeling has been difficult to attain in solution, in particular, for reactions that require multiple protons and multiple electrons (nH+/ne-). Using a combination of heterogeneous electrochemistry, electrode and molecule design one may control both electron transfer (ET) and proton transfer (PT) of these nH+/ne- reactions. Such control can allow functional modeling of hydrogenases (H+ + e- → 1/2 H2), cytochrome c oxidase (O2 + 4 e- + 4 H+ → 2 H2O), monooxygenases (RR'CH2 + O2 + 2 e- + 2 H+ → RR'CHOH + H2O) and dioxygenases (S + O2 → SO2; S = organic substrate) in aqueous medium and at room temperatures. In addition, these heterogeneous constructs allow probing unnatural bioinspired reactions and estimation of the inner- and outer-sphere reorganization energy of small molecules and proteins.
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Affiliation(s)
- Abhijit Nayek
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, WB India 700032
| | - Md Estak Ahmed
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, WB India 700032
| | - Soumya Samanta
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, WB India 700032
| | - Souvik Dinda
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, WB India 700032
| | - Suman Patra
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, WB India 700032
| | - Somdatta Ghosh Dey
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, WB India 700032
| | - Abhishek Dey
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja SC Mullick Road, Kolkata, WB India 700032
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30
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Galeotti M, Vicens L, Salamone M, Costas M, Bietti M. Resolving Oxygenation Pathways in Manganese-Catalyzed C(sp 3)-H Functionalization via Radical and Cationic Intermediates. J Am Chem Soc 2022; 144:7391-7401. [PMID: 35417154 PMCID: PMC9052745 DOI: 10.1021/jacs.2c01466] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
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The C(sp3)–H bond oxygenation of the cyclopropane-containing
mechanistic probes 6-tert-butylspiro[2.5]octane and
spiro[2.5]octane with hydrogen peroxide catalyzed by manganese complexes
bearing aminopyridine tetradentate ligands has been studied. Mixtures
of unrearranged and rearranged oxygenation products (alcohols, ketones,
and esters) are obtained, suggesting the involvement of cationic intermediates
and the contribution of different pathways following the initial hydrogen
atom transfer-based C–H bond cleavage step. Despite such a
complex mechanistic scenario, a judicious choice of the catalyst structure
and reaction conditions (solvent, temperature, and carboxylic acid)
could be employed to resolve these oxygenation pathways, leading,
with the former substrate, to conditions where a single unrearranged
or rearranged product is obtained in good isolated yield. Taken together,
the work demonstrates an unprecedented ability to precisely direct
the chemoselectivity of the C–H oxidation reaction, discriminating
among multiple pathways. In addition, these results conclusively demonstrate
that stereospecific C(sp3)–H oxidation can take
place via a cationic intermediate and that this path can become exclusive
in governing product formation, expanding the available toolbox of
aliphatic C–H bond oxygenations. The implications of these
findings are discussed in the framework of the development of synthetically
useful C–H functionalization procedures and the associated
mechanistic features.
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Affiliation(s)
- Marco Galeotti
- Dipartimento di Scienze e Tecnologie Chimiche, Università"Tor Vergata", Via della Ricerca Scientifica, 1, I-00133 Rome, Italy
| | - Laia Vicens
- QBIS Research Group, Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química, Universitat de Girona, Campus Montilivi, Girona E-17071, Catalonia, Spain
| | - Michela Salamone
- Dipartimento di Scienze e Tecnologie Chimiche, Università"Tor Vergata", Via della Ricerca Scientifica, 1, I-00133 Rome, Italy
| | - Miquel Costas
- QBIS Research Group, Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química, Universitat de Girona, Campus Montilivi, Girona E-17071, Catalonia, Spain
| | - Massimo Bietti
- Dipartimento di Scienze e Tecnologie Chimiche, Università"Tor Vergata", Via della Ricerca Scientifica, 1, I-00133 Rome, Italy
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31
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Lee C, Hwang Y, Kang HG, Lee SJ. Electron Transfer to Hydroxylase through Component Interactions in Soluble Methane Monooxygenase. J Microbiol Biotechnol 2022; 32:287-293. [PMID: 35131957 PMCID: PMC9628860 DOI: 10.4014/jmb.2201.01029] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Revised: 02/02/2022] [Accepted: 02/03/2022] [Indexed: 12/15/2022]
Abstract
The hydroxylation of methane (CH4) is crucial to the field of environmental microbiology, owing to the heat capacity of methane, which is much higher than that of carbon dioxide (CO2). Soluble methane monooxygenase (sMMO), a member of the bacterial multicomponent monooxygenase (BMM) superfamily, is essential for the hydroxylation of specific substrates, including hydroxylase (MMOH), regulatory component (MMOB), and reductase (MMOR). The diiron active site positioned in the MMOH α-subunit is reduced through the interaction of MMOR in the catalytic cycle. The electron transfer pathway, however, is not yet fully understood due to the absence of complex structures with reductases. A type II methanotroph, Methylosinus sporium 5, successfully expressed sMMO and hydroxylase, which were purified for the study of the mechanisms. Studies on the MMOH-MMOB interaction have demonstrated that Tyr76 and Trp78 induce hydrophobic interactions through π-π stacking. Structural analysis and sequencing of the ferredoxin domain in MMOR (MMOR-Fd) suggested that Tyr93 and Tyr95 could be key residues for electron transfer. Mutational studies of these residues have shown that the concentrations of flavin adenine dinucleotide (FAD) and iron ions are changed. The measurements of dissociation constants (Kds) between hydroxylase and mutated reductases confirmed that the binding affinities were not significantly changed, although the specific enzyme activities were significantly reduced by MMOR-Y93A. This result shows that Tyr93 could be a crucial residue for the electron transfer route at the interface between hydroxylase and reductase.
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Affiliation(s)
- Chaemin Lee
- Department of Chemistry, Jeonbuk National University, Jeonju 54896, Republic of Korea
| | - Yunha Hwang
- Department of Chemistry, Jeonbuk National University, Jeonju 54896, Republic of Korea
| | - Hyun Goo Kang
- Department of Neurology, Research Institute of Clinical Medicine of Jeonbuk National University and Biomedical Research Institute of Jeonbuk National University Hospital, Jeonju 54907, Republic of Korea,Corresponding authors H.G. Kang Phone: +82-63-250-1590 Fax: +82-63-251-9363 E-mail:
| | - Seung Jae Lee
- Department of Chemistry, Jeonbuk National University, Jeonju 54896, Republic of Korea,Institute for Molecular Biology and Genetics, Jeonbuk National University, Jeonju 54896, Republic of Korea,
S.J. Lee Phone: +82-63-270-3412 Fax: +82-63-270-3407 E-mail:
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32
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Wang Z, Fang W, Peng W, Wu P, Wang B. Recent Computational Insights into the Oxygen Activation by Copper-Dependent Metalloenzymes. Top Catal 2022. [DOI: 10.1007/s11244-021-01444-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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33
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A general strategy for C(sp 3)-H functionalization with nucleophiles using methyl radical as a hydrogen atom abstractor. Nat Commun 2021; 12:6950. [PMID: 34845207 PMCID: PMC8630022 DOI: 10.1038/s41467-021-27165-z] [Citation(s) in RCA: 50] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Accepted: 11/04/2021] [Indexed: 11/08/2022] Open
Abstract
Photoredox catalysis has provided many approaches to C(sp3)-H functionalization that enable selective oxidation and C(sp3)-C bond formation via the intermediacy of a carbon-centered radical. While highly enabling, functionalization of the carbon-centered radical is largely mediated by electrophilic reagents. Notably, nucleophilic reagents represent an abundant and practical reagent class, motivating the interest in developing a general C(sp3)-H functionalization strategy with nucleophiles. Here we describe a strategy that transforms C(sp3)-H bonds into carbocations via sequential hydrogen atom transfer (HAT) and oxidative radical-polar crossover. The resulting carbocation is functionalized by a variety of nucleophiles-including halides, water, alcohols, thiols, an electron-rich arene, and an azide-to effect diverse bond formations. Mechanistic studies indicate that HAT is mediated by methyl radical-a previously unexplored HAT agent with differing polarity to many of those used in photoredox catalysis-enabling new site-selectivity for late-stage C(sp3)-H functionalization.
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34
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Plant monounsaturated fatty acids: Diversity, biosynthesis, functions and uses. Prog Lipid Res 2021; 85:101138. [PMID: 34774919 DOI: 10.1016/j.plipres.2021.101138] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Revised: 11/02/2021] [Accepted: 11/06/2021] [Indexed: 11/22/2022]
Abstract
Monounsaturated fatty acids are straight-chain aliphatic monocarboxylic acids comprising a unique carbon‑carbon double bond, also termed unsaturation. More than 50 distinct molecular structures have been described in the plant kingdom, and more remain to be discovered. The evolution of land plants has apparently resulted in the convergent evolution of non-homologous enzymes catalyzing the dehydrogenation of saturated acyl chain substrates in a chemo-, regio- and stereoselective manner. Contrasted enzymatic characteristics and different subcellular localizations of these desaturases account for the diversity of existing fatty acid structures. Interestingly, the location and geometrical configuration of the unsaturation confer specific characteristics to these molecules found in a variety of membrane, storage, and surface lipids. An ongoing research effort aimed at exploring the links existing between fatty acid structures and their biological functions has already unraveled the importance of several monounsaturated fatty acids in various physiological and developmental contexts. What is more, the monounsaturated acyl chains found in the oils of seeds and fruits are widely and increasingly used in the food and chemical industries due to the physicochemical properties inherent in their structures. Breeders and plant biotechnologists therefore develop new crops with high monounsaturated contents for various agro-industrial purposes.
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35
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Jacobs AB, Banerjee R, Deweese DE, Braun A, Babicz JT, Gee LB, Sutherlin KD, Böttger LH, Yoda Y, Saito M, Kitao S, Kobayashi Y, Seto M, Tamasaku K, Lipscomb JD, Park K, Solomon EI. Nuclear Resonance Vibrational Spectroscopic Definition of the Fe(IV) 2 Intermediate Q in Methane Monooxygenase and Its Reactivity. J Am Chem Soc 2021; 143:16007-16029. [PMID: 34570980 PMCID: PMC8631202 DOI: 10.1021/jacs.1c05436] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Methanotrophic bacteria utilize the nonheme diiron enzyme soluble methane monooxygenase (sMMO) to convert methane to methanol in the first step of their metabolic cycle under copper-limiting conditions. The structure of the sMMO Fe(IV)2 intermediate Q responsible for activating the inert C-H bond of methane (BDE = 104 kcal/mol) remains controversial, with recent studies suggesting both "open" and "closed" core geometries for its active site. In this study, we employ nuclear resonance vibrational spectroscopy (NRVS) to probe the geometric and electronic structure of intermediate Q at cryogenic temperatures. These data demonstrate that Q decays rapidly during the NRVS experiment. Combining data from several years of measurements, we derive the NRVS vibrational features of intermediate Q as well as its cryoreduced decay product. A library of 90 open and closed core models of intermediate Q is generated using density functional theory to analyze the NRVS data of Q and its cryoreduced product as well as prior spectroscopic data on Q. Our analysis reveals that a subset of closed core models reproduce these newly acquired NRVS data as well as prior data. The reaction coordinate with methane is also evaluated using both closed and open core models of Q. These studies show that the potent reactivity of Q toward methane resides in the "spectator oxo" of its Fe(IV)2O2 core, in contrast to nonheme mononuclear Fe(IV)═O enzyme intermediates that H atoms abstract from weaker C-H bonds.
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Affiliation(s)
- Ariel B. Jacobs
- Department of Chemistry, Stanford University, 333 Campus Drive, Stanford, California, 94305, United States
| | - Rahul Banerjee
- Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, Minnesota 55391 U.S.A
| | - Dory E. Deweese
- Department of Chemistry, Stanford University, 333 Campus Drive, Stanford, California, 94305, United States
| | - Augustin Braun
- Department of Chemistry, Stanford University, 333 Campus Drive, Stanford, California, 94305, United States
| | - Jeffrey T. Babicz
- Department of Chemistry, Stanford University, 333 Campus Drive, Stanford, California, 94305, United States
| | - Leland B. Gee
- Department of Chemistry, Stanford University, 333 Campus Drive, Stanford, California, 94305, United States
| | - Kyle D. Sutherlin
- Department of Chemistry, Stanford University, 333 Campus Drive, Stanford, California, 94305, United States
| | - Lars H. Böttger
- Department of Chemistry, Stanford University, 333 Campus Drive, Stanford, California, 94305, United States
| | - Yoshitaka Yoda
- Japan Synchrotron Radiation Research Institute, Hyogo 679-5198, Japan
| | - Makina Saito
- Department of Physics, Graduate School of Science, Tohoku University, Sendai, Miyagi 980-8578 Japan
| | - Shinji Kitao
- Institute for Integrated Radiation and Nuclear Science, Kyoto University, Osaka, 590-0494
| | - Yasuhiro Kobayashi
- Institute for Integrated Radiation and Nuclear Science, Kyoto University, Osaka, 590-0494
| | - Makoto Seto
- Institute for Integrated Radiation and Nuclear Science, Kyoto University, Osaka, 590-0494
| | - Kenji Tamasaku
- RIKEN SPring-8 Center, RIKEN, Sayo, Hyogo, 679-5148, Japan
| | - John D. Lipscomb
- Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, Minnesota 55391 U.S.A
| | - Kiyoung Park
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
| | - Edward I. Solomon
- Department of Chemistry, Stanford University, 333 Campus Drive, Stanford, California, 94305, United States,Stanford Synchrotron Radiation Light Source, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California, 94025, United States
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36
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Itoh S, Shinke T, Itoh M, Wada T, Morimoto Y, Yanagisawa S, Sugimoto H, Kubo M. Revisiting Alkane Hydroxylation with m-CPBA (mChloroperbenzoic Acid) Catalyzed by Nickel(II) Complexes. Chemistry 2021; 27:14730-14737. [PMID: 34402568 DOI: 10.1002/chem.202102532] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Indexed: 11/09/2022]
Abstract
Mechanistic studies are performed on the alkane hydroxylation with m -CPBA ( m -chloroperbenzoic acid) catalyzed by nickel(II) complexes, Ni II (L). In the oxidation of cycloalkanes, Ni II (TPA) acts as an efficient catalyst with a high yield and a high alcohol selectivity. In the oxidation of adamantane, the tertiary carbon is predominantly oxidized. The reaction rate shows first-order dependence on [substrate] and [Ni II (L)] but is independent on [ m CPBA]; v obs = k 2 [substrate][ Ni II (L)]. The reaction exhibited a relatively large kinetic deuterium isotope effect ( KIE ) of 6.7, demonstrating that the hydrogen atom abstraction is involved in the rate-limiting step of the catalytic cycle. Furthermore, Ni II (L) supported by related tetradentate ligands exhibit apparently different catalytic activity, suggesting contribution of the Ni II (L) in the catalytic cycle. Based on the kinetic analysis and the significant effects of O 2 and CCl 4 on the product distribution pattern, possible contributions of (L)Ni II -O• and the acyloxyl radical as the reactive oxidants are discussed.
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Affiliation(s)
- Shinobu Itoh
- Osaka University, Graduate School of Engineering, 2-1 Yamadaoka, 565-0871, Suita, JAPAN
| | - Tomoya Shinke
- Osaka University School of Engineering Graduate School of Engineering: Osaka Daigaku Kogakubu Daigakuin Kogaku Kenkyuka, Applied Chemistry, JAPAN
| | - Mayu Itoh
- Osaka University School of Engineering Graduate School of Engineering: Osaka Daigaku Kogakubu Daigakuin Kogaku Kenkyuka, Applied Chemistry, JAPAN
| | - Takuma Wada
- Osaka University School of Engineering Graduate School of Engineering: Osaka Daigaku Kogakubu Daigakuin Kogaku Kenkyuka, Applied Chemistry, JAPAN
| | - Yuma Morimoto
- Osaka University School of Engineering Graduate School of Engineering: Osaka Daigaku Kogakubu Daigakuin Kogaku Kenkyuka, Applied Chemistry, JAPAN
| | | | - Hideki Sugimoto
- Osaka University School of Engineering Graduate School of Engineering: Osaka Daigaku Kogakubu Daigakuin Kogaku Kenkyuka, Applied Chemistry, JAPAN
| | - Minoru Kubo
- Graduate School of Science, Life Science, JAPAN
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37
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Amtawong J, Skjelstad BB, Handford RC, Suslick BA, Balcells D, Tilley TD. C-H Activation by RuCo 3O 4 Oxo Cubanes: Effects of Oxyl Radical Character and Metal-Metal Cooperativity. J Am Chem Soc 2021; 143:12108-12119. [PMID: 34318666 DOI: 10.1021/jacs.1c04069] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
High-valent multimetallic-oxo/oxyl species have been implicated as intermediates in oxidative catalysis involving proton-coupled electron transfer (PCET) reactions, but the reactive nature of these oxo species has hindered the development of an in-depth understanding of their mechanisms and multimetallic character. The mechanism of C-H oxidation by previously reported RuCo3O4 cubane complexes bearing a terminal RuV-oxo ligand, with significant oxyl radical character, was investigated. The rate-determining step involves H atom abstraction (HAA) from an organic substrate to generate a Ru-OH species and a carbon-centered radical. Radical intermediates are subsequently trapped by another equivalent of the terminal oxo to afford isolable radical-trapped cubane complexes. Density functional theory (DFT) reveals a barrierless radical combination step that is more favorable than an oxygen-rebound mechanism by 12.3 kcal mol-1. This HAA reactivity to generate organic products is influenced by steric congestion and the C-H bond dissociation energy of the substrate. Tuning the electronic properties of the cubane (i.e., spin density localized on terminal oxo, basicity, and redox potential) by varying the donor ability of ligands at the Co sites modulates C-H activations by the RuV-oxo fragment and enables construction of structure-activity relationships. These results reveal a mechanistic pathway for C-H activation by high-valent metal-oxo species with oxyl radical character and provide insights into cooperative effects of multimetallic centers in tuning PCET reactivity.
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Affiliation(s)
- Jaruwan Amtawong
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720-1460, United States.,Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Bastian Bjerkem Skjelstad
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, P.O. Box 1033, Blindern, 0315 Oslo, Norway
| | - Rex C Handford
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720-1460, United States
| | - Benjamin A Suslick
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720-1460, United States.,Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - David Balcells
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, P.O. Box 1033, Blindern, 0315 Oslo, Norway
| | - T Don Tilley
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720-1460, United States.,Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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38
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Simons MC, Prinslow SD, Babucci M, Hoffman AS, Hong J, Vitillo JG, Bare SR, Gates BC, Lu CC, Gagliardi L, Bhan A. Beyond Radical Rebound: Methane Oxidation to Methanol Catalyzed by Iron Species in Metal-Organic Framework Nodes. J Am Chem Soc 2021; 143:12165-12174. [PMID: 34314584 DOI: 10.1021/jacs.1c04766] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Recent work has exploited the ability of metal-organic frameworks (MOFs) to isolate Fe sites that mimic the structures of sites in enzymes that catalyze selective oxidations at low temperatures, opening new pathways for the valorization of underutilized feedstocks such as methane. Questions remain as to whether the radical-rebound mechanism commonly invoked in enzymatic and homogeneous systems also applies in these rigid-framework materials, in which resisting the overoxidation of desired products is a major challenge. We demonstrate that MOFs bearing Fe(II) sites within Fe3-μ3-oxo nodes active for conversion of CH4 + N2O mixtures (368-408 K) require steps beyond the radical-rebound mechanism to protect the desired CH3OH product. Infrared spectra and density functional theory show that CH3OH(g) is stabilized as Fe(III)-OCH3 groups on the MOF via hydrogen atom transfer with Fe(III)-OH groups, eliminating water. Consequently, upon addition of a protonic zeolite in inter- and intrapellet mixtures with the MOF, we observed increases in CH3OH selectivity with increasing ratio and proximity of zeolitic H+ to MOF-based Fe(II) sites, as methanol is protected within the zeolite. We infer from the data that CH3OH(g) is formed via the radical-rebound mechanism on Fe(II) sites but that subsequent transport and dehydration steps are required to protect CH3OH(g) from overoxidation. The results demonstrate that the radical-rebound mechanism commonly invoked in this chemistry is insufficient to explain the reactivity of these systems, that the selectivity-controlling steps involve both chemical and physical rate phenomena, as well as offering a strategy to mitigate overoxidation in these and similar systems.
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Affiliation(s)
- Matthew C Simons
- Department of Chemical Engineering and Materials Science, University of Minnesota, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, United States
| | - Steven D Prinslow
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455, United States
| | - Melike Babucci
- Department of Chemical Engineering, University of California, Davis, Davis, California 95616, United States
| | - Adam S Hoffman
- SSRL, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Jiyun Hong
- SSRL, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Jenny G Vitillo
- Department of Science and High Technology and INSTM, University of Insubria, 22100 Como, Italy
| | - Simon R Bare
- SSRL, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Bruce C Gates
- Department of Chemical Engineering, University of California, Davis, Davis, California 95616, United States
| | - Connie C Lu
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455, United States
| | - Laura Gagliardi
- Department of Chemistry, Pritzker School of Molecular Engineering, The James Franck Institute and Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Aditya Bhan
- Department of Chemical Engineering and Materials Science, University of Minnesota, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, United States
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Schulz C, Castillo RG, Pantazis DA, DeBeer S, Neese F. Structure-Spectroscopy Correlations for Intermediate Q of Soluble Methane Monooxygenase: Insights from QM/MM Calculations. J Am Chem Soc 2021; 143:6560-6577. [PMID: 33884874 PMCID: PMC8154522 DOI: 10.1021/jacs.1c01180] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2021] [Indexed: 12/22/2022]
Abstract
The determination of the diiron core intermediate structures involved in the catalytic cycle of soluble methane monooxygenase (sMMO), the enzyme that selectively catalyzes the conversion of methane to methanol, has been a subject of intense interest within the bioinorganic scientific community. Particularly, the specific geometry and electronic structure of the intermediate that precedes methane binding, known as intermediate Q (or MMOHQ), has been debated for over 30 years. Some reported studies support a bis-μ-oxo-bridged Fe(IV)2O2 closed-core conformation Fe(IV)2O2 core, whereas others favor an open-core geometry, with a longer Fe-Fe distance. The lack of consensus calls for a thorough re-examination and reinterpretation of the spectroscopic data available on the MMOHQ intermediate. Herein, we report extensive simulations based on a hybrid quantum mechanics/molecular mechanics approach (QM/MM) approach that takes into account the complete enzyme to explore possible conformations for intermediates MMOHox and MMOHQ of the sMMOH catalytic cycle. High-level quantum chemical approaches are used to correlate specific structural motifs with geometric parameters for comparison with crystallographic and EXAFS data, as well as with spectroscopic data from Mössbauer spectroscopy, Fe K-edge high-energy resolution X-ray absorption spectroscopy (HERFD XAS), and resonance Raman 16O-18O difference spectroscopy. The results provide strong support for an open-core-type configuration in MMOHQ, with the most likely topology involving mono-oxo-bridged Fe ions and alternate terminal Fe-oxo and Fe-hydroxo groups that interact via intramolecular hydrogen bonding. The implications of an open-core intermediate Q on the reaction mechanism of sMMO are discussed.
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Affiliation(s)
- Christine
E. Schulz
- Max-Planck-Institut
für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Rebeca G. Castillo
- Max
Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Dimitrios A. Pantazis
- Max-Planck-Institut
für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Serena DeBeer
- Max
Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Frank Neese
- Max-Planck-Institut
für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
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Peng W, Qu X, Shaik S, Wang B. Deciphering the oxygen activation mechanism at the CuC site of particulate methane monooxygenase. Nat Catal 2021. [DOI: 10.1038/s41929-021-00591-4] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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41
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Kroll T, Baker ML, Wilson SA, Lundberg M, Juhin A, Arrio MA, Yan JJ, Gee LB, Braun A, Weng TC, Sokaras D, Hedman B, Hodgson KO, Solomon EI. Effect of 3d/4p Mixing on 1s2p Resonant Inelastic X-ray Scattering: Electronic Structure of Oxo-Bridged Iron Dimers. J Am Chem Soc 2021; 143:4569-4584. [PMID: 33730507 PMCID: PMC8018712 DOI: 10.1021/jacs.0c11193] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
1s2p resonant inelastic X-ray scattering (1s2p RIXS) has proven successful in the determination of the differential orbital covalency (DOC, the amount of metal vs ligand character in each d molecular orbital) of highly covalent centrosymmetric iron environments including heme models and enzymes. However, many reactive intermediates have noncentrosymmetric environments, e.g., the presence of strong metal-oxo bonds, which results in the mixing of metal 4p character into the 3d orbitals. This leads to significant intensity enhancement in the metal K-pre-edge and as shown here, the associated 1s2p RIXS features, which impact their insight into electronic structure. Binuclear oxo bridged high spin Fe(III) complexes are used to determine the effects of 4p mixing on 1s2p RIXS spectra. In addition to developing the analysis of 4p mixing on K-edge XAS and 1s2p RIXS data, this study explains the selective nature of the 4p mixing that also enhances the analysis of L-edge XAS intensity in terms of DOC. These 1s2p RIXS biferric model studies enable new structural insight from related data on peroxo bridged biferric enzyme intermediates. The dimeric nature of the oxo bridged Fe(III) complexes further results in ligand-to-ligand interactions between the Fe(III) sites and angle dependent features just above the pre-edge that reflect the superexchange pathway of the oxo bridge. Finally, we present a methodology that enables DOC to be obtained when L-edge XAS is inaccessible and only 1s2p RIXS experiments can be performed as in many metalloenzyme intermediates in solution.
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Affiliation(s)
- Thomas Kroll
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, United States
| | - Michael L Baker
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
- Department of Chemistry, The University of Manchester, Manchester M13 9PL, United Kingdom
| | - Samuel A Wilson
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Marcus Lundberg
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
- Department of Chemistry - Ångström Laboratory, Uppsala University, SE-751 20 Uppsala, Sweden
| | - Amélie Juhin
- CNRS, Sorbonne Université, UMR7590, Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC) Univ Paris 06, Muséum National d'Histoire Naturelle, IRD UMR206, 4 Place Jussieu, F-75005 Paris, France
| | - Marie-Anne Arrio
- CNRS, Sorbonne Université, UMR7590, Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC) Univ Paris 06, Muséum National d'Histoire Naturelle, IRD UMR206, 4 Place Jussieu, F-75005 Paris, France
| | - James J Yan
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Leland B Gee
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Augustin Braun
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Tsu-Chien Weng
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, United States
| | - Dimosthenis Sokaras
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, United States
| | - Britt Hedman
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, United States
| | - Keith O Hodgson
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, United States
| | - Edward I Solomon
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, United States
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42
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Kerbib W, Singh S, Nautiyal D, Kumar A, Kumar S. Ni(II) complexes of tripodal N4 ligands as catalysts for alkane hydroxylation and O-arylation of phenol: Structural and reactivity effects induced by fluoro substitution. Inorganica Chim Acta 2021. [DOI: 10.1016/j.ica.2020.120191] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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43
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DeCastro ME, Doane MP, Dinsdale EA, Rodríguez-Belmonte E, González-Siso MI. Exploring the taxonomical and functional profile of As Burgas hot spring focusing on thermostable β-galactosidases. Sci Rep 2021; 11:101. [PMID: 33420292 PMCID: PMC7794327 DOI: 10.1038/s41598-020-80489-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2020] [Accepted: 12/17/2020] [Indexed: 01/29/2023] Open
Abstract
In the present study we investigate the microbial community inhabiting As Burgas geothermal spring, located in Ourense (Galicia, Spain). The approximately 23 Gbp of Illumina sequences generated for each replicate revealed a complex microbial community dominated by Bacteria in which Proteobacteria and Aquificae were the two prevalent phyla. An association between the two most prevalent genera, Thermus and Hydrogenobacter, was suggested by the relationship of their metabolism. The high relative abundance of sequences involved in the Calvin-Benson cycle and the reductive TCA cycle unveils the dominance of an autotrophic population. Important pathways from the nitrogen and sulfur cycle are potentially taking place in As Burgas hot spring. In the assembled reads, two complete ORFs matching GH2 beta-galactosidases were found. To assess their functional characterization, the two ORFs were cloned and overexpressed in E. coli. The pTsbg enzyme had activity towards o-Nitrophenyl-β-D-galactopyranoside (ONPG) and p-Nitrophenyl-β-D-fucopyranoside, with high thermal stability and showing maximal activity at 85 °C and pH 6, nevertheless the enzyme failed to hydrolyze lactose. The other enzyme, Tsbg, was unable to hydrolyze even ONPG or lactose. This finding highlights the challenge of finding novel active enzymes based only on their sequence.
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Affiliation(s)
- María-Eugenia DeCastro
- Grupo EXPRELA, Centro de Investigacións Científicas Avanzadas (CICA), Facultade de Ciencias, Universidade da Coruña, A Coruña, Spain
| | - Michael P Doane
- Department of Biology, San Diego State University, 5500 Campanile Dr., San Diego, CA, 92182, USA
- Syndey Institute of Marine Science, 19 Chowder Bay Rd, Mosman, NSW, 2088, Australia
| | - Elizabeth Ann Dinsdale
- Department of Biology, San Diego State University, 5500 Campanile Dr., San Diego, CA, 92182, USA
- College of Science and Engineering, Flinders University, Sturt Rd, Bedford Park, SA, 5042, Australia
| | - Esther Rodríguez-Belmonte
- Grupo EXPRELA, Centro de Investigacións Científicas Avanzadas (CICA), Facultade de Ciencias, Universidade da Coruña, A Coruña, Spain
| | - María-Isabel González-Siso
- Grupo EXPRELA, Centro de Investigacións Científicas Avanzadas (CICA), Facultade de Ciencias, Universidade da Coruña, A Coruña, Spain.
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Yamaguchi K, Miyagawa K, Isobe H, Shoji M, Kawakami T, Yamanaka S. Isolobal and isospin analogy between organic and inorganic open-shell molecules—Application to oxygenation reactions by active oxygen and oxy-radicals and water oxidation in the native and artificial photosynthesis. ADVANCES IN QUANTUM CHEMISTRY 2021. [DOI: 10.1016/bs.aiq.2021.10.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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45
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Ansari M, Senthilnathan D, Rajaraman G. Deciphering the origin of million-fold reactivity observed for the open core diiron [HO-Fe III-O-Fe IV[double bond, length as m-dash]O] 2+ species towards C-H bond activation: role of spin-states, spin-coupling, and spin-cooperation. Chem Sci 2020; 11:10669-10687. [PMID: 33209248 PMCID: PMC7654192 DOI: 10.1039/d0sc02624g] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2020] [Accepted: 06/16/2020] [Indexed: 01/26/2023] Open
Abstract
High-valent metal-oxo species have been characterised as key intermediates in both heme and non-heme enzymes that are found to perform efficient aliphatic hydroxylation, epoxidation, halogenation, and dehydrogenation reactions. Several biomimetic model complexes have been synthesised over the years to mimic both the structure and function of metalloenzymes. The diamond-core [Fe2(μ-O)2] is one of the celebrated models in this context as this has been proposed as the catalytically active species in soluble methane monooxygenase enzymes (sMMO), which perform the challenging chemical conversion of methane to methanol at ease. In this context, a report of open core [HO(L)FeIII-O-FeIV(O)(L)]2+ (1) gains attention as this activates C-H bonds a million-fold faster compared to the diamond-core structure and has the dual catalytic ability to perform hydroxylation as well as desaturation with organic substrates. In this study, we have employed density functional methods to probe the origin of the very high reactivity observed for this complex and also to shed light on how this complex performs efficient hydroxylation and desaturation of alkanes. By modelling fifteen possible spin-states for 1 that could potentially participate in the reaction mechanism, our calculations reveal a doublet ground state for 1 arising from antiferromagnetic coupling between the quartet FeIV centre and the sextet FeIII centre, which regulates the reactivity of this species. The unusual stabilisation of the high-spin ground state for FeIV[double bond, length as m-dash]O is due to the strong overlap of with the orbital, reducing the antibonding interactions via spin-cooperation. The electronic structure features computed for 1 are consistent with experiments offering confidence in the methodology chosen. Further, we have probed various mechanistic pathways for the C-H bond activation as well as -OH rebound/desaturation of alkanes. An extremely small barrier height computed for the first hydrogen atom abstraction by the terminal FeIV[double bond, length as m-dash]O unit was found to be responsible for the million-fold activation observed in the experiments. The barrier height computed for -OH rebound by the FeIII-OH unit is also smaller suggesting a facile hydroxylation of organic substrates by 1. A strong spin-cooperation between the two iron centres also reduces the barrier for second hydrogen atom abstraction, thus making the desaturation pathway competitive. Both the spin-state as well as spin-coupling between the two metal centres play a crucial role in dictating the reactivity for species 1. By exploring various mechanistic pathways, our study unveils the fact that the bridged μ-oxo group is a poor electrophile for both C-H activation as well for -OH rebound. As more and more evidence is gathered in recent years for the open core geometry of sMMO enzymes, the idea of enhancing the reactivity via an open-core motif has far-reaching consequences.
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Affiliation(s)
- Mursaleem Ansari
- Department of Chemistry , Indian Institute of Technology Bombay , Mumbai 400076 , India .
| | - Dhurairajan Senthilnathan
- Center for Computational Chemistry , CRD , PRIST University , Vallam , Thanjavur , Tamilnadu 613403 , India
| | - Gopalan Rajaraman
- Department of Chemistry , Indian Institute of Technology Bombay , Mumbai 400076 , India .
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46
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Zhang X, Liu L, Li Y. Synthesis and Benzene Hydroxylation Properties of Amino Substituted [FeFe]-Hydrogenase Model Compounds. Catal Letters 2020. [DOI: 10.1007/s10562-020-03197-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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47
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Abstract
Natural gas (Methane) is currently the primary source of catalytic hydrogen production, accounting for three quarters of the annual global dedicated hydrogen production (about 70 M tons). Steam–methane reforming (SMR) is the currently used industrial process for hydrogen production. However, the SMR process suffers with insufficient catalytic activity, low long-term stability, and excessive energy input, mostly due to the handling of large amount of CO2 coproduced. With the demand for anticipated hydrogen production to reach 122.5 M tons in 2024, novel and upgraded catalytic processes are desired for more effective utilization of precious natural resources. In this review, we summarized the major descriptors of catalyst and reaction engineering of the SMR process and compared the SMR process with its derivative technologies, such as dry reforming with CO2 (DRM), partial oxidation with O2, autothermal reforming with H2O and O2. Finally, we discussed the new progresses of methane conversion: direct decomposition to hydrogen and solid carbon and selective oxidation in mild conditions to hydrogen containing liquid organics (i.e., methanol, formic acid, and acetic acid), which serve as alternative hydrogen carriers. We hope this review will help to achieve a whole picture of catalytic hydrogen production from methane.
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48
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Alkane and alkene oxidation reactions catalyzed by nickel(II) complexes: Effect of ligand factors. Coord Chem Rev 2020. [DOI: 10.1016/j.ccr.2019.213085] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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49
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Sharma N, Lee Y, Nam W, Fukuzumi S. Photoinduced Generation of Superoxidants for the Oxidation of Substrates with High C−H Bond Dissociation Energies. CHEMPHOTOCHEM 2019. [DOI: 10.1002/cptc.201900219] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Namita Sharma
- Department of Chemistry and Nano ScienceEwha Womans University Seoul 03760 Korea
| | - Yong‐Min Lee
- Department of Chemistry and Nano ScienceEwha Womans University Seoul 03760 Korea
| | - Wonwoo Nam
- Department of Chemistry and Nano ScienceEwha Womans University Seoul 03760 Korea
| | - Shunichi Fukuzumi
- Department of Chemistry and Nano ScienceEwha Womans University Seoul 03760 Korea
- Graduate School of Science and EngineeringMeijo University, Nagoya Aichi 468-8502 Japan
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50
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Sundararajan M, Park B, Baik MH. Regioselective Oxidation of C-H Bonds in Unactivated Alkanes by a Vanadium Superoxo Catalyst Bound to a Supramolecular Host. Inorg Chem 2019; 58:16250-16255. [PMID: 31721568 DOI: 10.1021/acs.inorgchem.9b02803] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
A vanadyl ion bound to a cucurbituril (CB) host was reported to oxidize pentane to 2-pentanol in the presence of an oxidizer. DFT calculations suggest that the catalyst selectively reacts with stronger C-H bonds in pentane over weaker C-H bonds in cyclohexane due to size exclusion by the CB host. The active catalyst is an unprecedented vanadium superoxo species bound to the host, and the selectivity toward secondary over the primary C-H bond is the result of a higher degree of charge transfer from the secondary compared to the primary position.
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Affiliation(s)
- Mahesh Sundararajan
- Center for Catalytic Hydrocarbon Functionalizations , Institute for Basic Science (IBS) , Daejeon 34141 , Republic of Korea.,Department of Chemistry , Korea Advanced Institute of Science and Technology (KAIST) , Daejeon 34141 , Republic of Korea
| | - Bohyun Park
- Center for Catalytic Hydrocarbon Functionalizations , Institute for Basic Science (IBS) , Daejeon 34141 , Republic of Korea.,Department of Chemistry , Korea Advanced Institute of Science and Technology (KAIST) , Daejeon 34141 , Republic of Korea
| | - Mu-Hyun Baik
- Center for Catalytic Hydrocarbon Functionalizations , Institute for Basic Science (IBS) , Daejeon 34141 , Republic of Korea.,Department of Chemistry , Korea Advanced Institute of Science and Technology (KAIST) , Daejeon 34141 , Republic of Korea
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