1
|
Pleyer HL, Strasdeit H, Fox S. A Possible Prebiotic Ancestry of Porphyrin-Type Protein Cofactors. ORIGINS LIFE EVOL B 2018; 48:347-371. [PMID: 30547367 DOI: 10.1007/s11084-018-9567-4] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2018] [Accepted: 10/31/2018] [Indexed: 10/27/2022]
Abstract
In previous experiments that simulated conditions on primordial volcanic islands, we demonstrated the abiotic formation of hydrophobic porphyrins. The present study focused on the question whether such porphyrins can be metalated by prebiotically plausible metal ion sources. We used water-insoluble octaethylporphyrin (H2oep) as a model compound. Experiments were conducted in a nitrogen atmosphere under cyclic wet-dry conditions in order to simulate the fluctuating environment in prebiotic rock pools. Wetting-drying proved to be a crucial factor. Significant yields of the metalloporphyrins (20-78% with respect to H2oep) were obtained from the soluble salts MCl2 (M = Mg, Fe, Co, Ni and Cu) in freshwater. Even almost insoluble minerals and rocks metalated the porphyrin. Basalt (an iron source, 11% yield), synthetic jaipurite (CoS, 33%) and synthetic covellite (CuS, 57%) were most efficient. Basalt, magnetite and FeCl2 gave considerably higher yields in artificial seawater than in freshwater. From iron sources, the highest yields, however, were obtained in an acidic medium (hydrochloric acid with an initial pH of 2.1). Under these conditions, iron meteorites also metalated the porphyrin. Acidic conditions were considered because they are known to occur during eruptions on volcanic islands. Octaethylporphyrinatomagnesium(II) did not form in acidic medium and was unstable towards dissolved Fe2+. It is therefore questionable whether magnesium porphyrins, i.e. possible ancestors of chlorophyll, could have accumulated in primordial rock pools. However, abiotically formed ancestors of the modern cofactors heme (Fe), B12 (Co), and F430 (Ni) may have been available to hypothetical protometabolisms and early organisms.
Collapse
Affiliation(s)
- Hannes Lukas Pleyer
- Department of Bioinorganic Chemistry and Chemical Evolution, Institute of Chemistry, University of Hohenheim, Garbenstr. 30, 70599, Stuttgart, Germany
| | - Henry Strasdeit
- Department of Bioinorganic Chemistry and Chemical Evolution, Institute of Chemistry, University of Hohenheim, Garbenstr. 30, 70599, Stuttgart, Germany
| | - Stefan Fox
- Department of Bioinorganic Chemistry and Chemical Evolution, Institute of Chemistry, University of Hohenheim, Garbenstr. 30, 70599, Stuttgart, Germany.
| |
Collapse
|
2
|
The Role of Hydrogen Peroxide in Redox-Dependent Signaling: Homeostatic and Pathological Responses in Mammalian Cells. Cells 2018; 7:cells7100156. [PMID: 30287799 PMCID: PMC6211135 DOI: 10.3390/cells7100156] [Citation(s) in RCA: 160] [Impact Index Per Article: 26.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2018] [Revised: 09/29/2018] [Accepted: 10/03/2018] [Indexed: 12/20/2022] Open
Abstract
Hydrogen peroxide (H2O2) is an important metabolite involved in most of the redox metabolism reactions and processes of the cells. H2O2 is recognized as one of the main molecules in the sensing, modulation and signaling of redox metabolism, and it is acting as a second messenger together with hydrogen sulfide (H2S) and nitric oxide (NO). These second messengers activate in turn a cascade of downstream proteins via specific oxidations leading to a metabolic response of the cell. This metabolic response can determine proliferation, survival or death of the cell depending on which downstream pathways (homeostatic, pathological, or protective) have been activated. The cells have several sources of H2O2 and cellular systems strictly control its concentration in different subcellular compartments. This review summarizes research on the role played by H2O2 in signaling pathways of eukaryotic cells and how this signaling leads to homeostatic or pathological responses.
Collapse
|
3
|
Wojaczyński J, Latos-Grażyński L. Photooxidation of N-Confused Porphyrin: A Route to N-Confused Biliverdin Analogues. Chemistry 2010; 16:2679-82. [DOI: 10.1002/chem.200903182] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
|
4
|
Kinetic analysis for suicide-substrate inactivation of microperoxidase-11: A modified model for bisubstrate enzymes in the presence of reversible inhibitors. ACTA ACUST UNITED AC 2009. [DOI: 10.1016/j.molcatb.2008.04.008] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
|
5
|
Pawlicki M, Kańska I, Latos-Grazyński L. Copper(II) and Copper(III) Complexes of Pyrrole-Appended Oxacarbaporphyrin. Inorg Chem 2007; 46:6575-84. [PMID: 17608473 DOI: 10.1021/ic700631t] [Citation(s) in RCA: 72] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The reaction of an O-confused porphyrin with a pendant pyrrole 4 and copper(II) acetate yields an organocopper(III) diamagnetic complex 4-Cu(III) substituted at the C(3) position by the pyrrole and H. The transformation of 4-Cu(III), performed in aerobic conditions, gave a rare copper(II) organometallic compound 6-Cu(II). In the course of this process, the tetrahedral-trigonal rearrangement originated at the C(3) atom but effects the whole structure. The electron paramagnetic resonance spectroscopic features correspond to a copper(II) oxidation state. A crystallographic analysis of 6-Cu(II) confirmed the formation of a direct metal-C bond [Cu(II)-C 1.939(4) A]. It was found that the Cu(II) complex of O-confused oxaporphyrin is sensitive to oxidative conditions. The degradation of 6-Cu(II) to yield copper(II) tripyrrinone complexes has been observed, which was considered as a peculiar case of dioxygen activation in a porphyrin-like environment. This process is accompanied by regioselective oxygenation at the inner C to form the 2-oxa-3-(2'-pyrrolyl)-21-hydroxycarbaporphyrinatocopper(II) complex ((pyrr)OCPO)CuII (8). The reaction of 6-Cu(II) with hydrogen peroxide, performed under heterophasic conditions, resulted in quantitative regioselective hydroxylation centered at the internal C(21) atom, also producing 8. Treatment of 8 with acid results in demetalation to form the nonaromatic 21-hydroxy O-confused porphyrin derivative ((pyrr)OCPOH)H (9).
Collapse
Affiliation(s)
- Miłosz Pawlicki
- Department of Chemistry, University of Wrocław, Wrocław, Poland
| | | | | |
Collapse
|
6
|
Pacholska‐Dudziak E, Latos‐Grażyński L. NMR Studies of Paramagnetic Metallocarbaporphyrinoids. Eur J Inorg Chem 2007. [DOI: 10.1002/ejic.200700078] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Ewa Pacholska‐Dudziak
- Department of Chemistry, University of Wrocław, 14 F. Joliot‐Curie St., Wrocław 50 383, Poland
| | | |
Collapse
|
7
|
Stephenson NA, Bell AT. Mechanistic study of iron(III) [tetrakis(pentafluorophenyl)porphyrin triflate (F(20)TPP)Fe(OTf) catalyzed cyclooctene epoxidation by hydrogen peroxide. Inorg Chem 2007; 46:2278-85. [PMID: 17311372 DOI: 10.1021/ic060757c] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We have recently proposed a mechanism for the epoxidation of cyclooctene by H2O2 catalyzed by iron(III) [tetrakis(pentafluorophenyl)]porphyrin chloride, (F20TPP)FeCl, in solvent containing methanol [Stephenson, N. A.; Bell, A.T. Inorg. Chem. 2006, 45, 2758-2766]. In that study, we found that catalysis did not occur unless (F20TPP)FeCl first dissociated, a process facilitated by the solvation of the Cl- anion by methanol and the coordination of methanol to the (F20TPP)Fe+ cation. Methanol as well as other alcohols was also found to facilitate the heterolytic cleavage of the O-O bond of H2O2 coordinated to the (F20TPP)Fe+ cation via a generalized acid mechanism. In the present study, we have shown that catalytic activity of the (F20TPP)Fe+ cation can be achieved in aprotic solvent by displacing the tightly bound chloride anion with a weakly bound triflate anion. By working in an aprotic solvent, acetonitrile, it was possible to determine the rate of heterolytic O-O bond cleavage in coordinated H2O2 unaffected by the interaction of the peroxide with methanol. A mechanism is proposed for this system and is shown to be valid over a range of reaction conditions. The mechanisms for cyclooctene epoxidation and H2O2 decomposition for the aprotic and protic solvent systems are similar with the only difference being the mechanism of proton-transfer prior to heterolytic cleavage of the oxygen-oxygen bond of coordinated hydrogen peroxide. Comparison of the rate parameters indicates that the utilization of hydrogen peroxide for cyclooctene epoxidation is higher in a protic solvent than in an aprotic solvent and results in a smaller extent of porphyrin degradation due to free radical attack. It was also shown that water can coordinate to the iron porphyrin cation in aprotic systems resulting in catalyst deactivation; this effect was not observed when methanol was present, since methanol was found to displace all of the coordinated water.
Collapse
Affiliation(s)
- Ned A Stephenson
- Chemical Sciences Division, Lawrence Berkeley Laboratory and Department of Chemical Engineering, University of California, Berkeley, California 94720-1462
| | | |
Collapse
|
8
|
Pavlov VY. Modern aspects of the Chemistry of protoporphyrin IX. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2007. [DOI: 10.1134/s1070428007010010] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
9
|
Rath SP, Olmstead MM, Balch AL. Electron Distribution in Iron Octaethyloxophlorin Complexes. Importance of the Fe(III) Oxophlorin Trianion Form in the Bis-pyridine and Bis-imidazole Complexes. Inorg Chem 2006; 45:6083-93. [PMID: 16842017 DOI: 10.1021/ic0607033] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The apportionment of electrons between iron and the porphyrinic macrocycle in complexes of octaethyloxophlorin (H3OEPO) has been a vexing problem. In particular, for (Py)2Fe(OEPO), which is an important intermediate in heme degradation, three resonance structures involving Fe(III), Fe(II), or Fe(I), respectively, have been considered. To clarify this matter, the electronic and geometric structures of (Py)2Fe(III)(OEPO), (Im)2Fe(III)(OEPO).2THF, and (Im)2Fe(III)(OEPO).1.6CHCl3 have been examined by single-crystal X-ray diffraction, measurement of magnetic moments as a function of temperature, and EPR and NMR spectral studies. The results clearly show that both complexes exist in the Fe(III)/oxophlorin trianion form rather than the Fe(II)/oxophlorin radical form previously established for (2,6-xylylNC)(2)Fe(II)(OEPO.). In the solid state from 10 to 300 K, (Py)2Fe(III)(OEPO) exists in the high-spin (S = 5/2) state with the axial ligands in parallel planes, a planar porphyrin, and long axial Fe-N distances. However, in solution it exists predominantly in a low-spin (S = 1/2) form. In contrast, the structures of (Im)2Fe(III)(OEPO).2THF and (Im)2Fe(III)(OEPO).1.6CHCl3 consist of porphyrins with a severe ruffled distortion, axial ligands in nearly perpendicular planes, and relatively short axial Fe-N distances. The crystallographic, magnetic, EPR, and NMR results all indicate that (Im)2Fe(III)(OEPO) exists in the low-spin Fe(III) form in both the solid state and in solution.
Collapse
Affiliation(s)
- Sankar Prasad Rath
- Department of Chemistry, University of California-Davis, Davis, CA 95616, USA
| | | | | |
Collapse
|
10
|
Ryabova ES, Rydberg P, Kolberg M, Harbitz E, Barra AL, Ryde U, Andersson KK, Nordlander E. A comparative reactivity study of microperoxidases based on hemin, mesohemin and deuterohemin. J Inorg Biochem 2005; 99:852-63. [PMID: 15708807 DOI: 10.1016/j.jinorgbio.2004.12.020] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2004] [Revised: 12/22/2004] [Accepted: 12/24/2004] [Indexed: 11/28/2022]
Abstract
Three microperoxidases--hemin-6(7)-gly-gly-his methyl ester (HGGH), mesohemin-6(7)-gly-gly-his methyl ester (MGGH) and deuterohemin-6(7)-gly-gly-his methyl ester (DGGH)--have been prepared as models for heme-containing peroxidases by condensation of glycyl-glycyl-L-histidine methyl ester with the propionic side chains of hemin, mesohemin and deuterohemin, respectively. The three microperoxidases differ in two substituents, R, of the protoporphyrin IX framework (HGGH: R=vinyl, MGGH: R=ethyl, DGGH: R=H). X-band and high field EPR spectra show that the microperoxidases exhibit spectroscopic properties similar to those of metmyoglobin, i.e. a high spin ferric S=5/2 signal at g(perpendicular)=6 and g parallel)=2 and an estimated D value of 7.5+/-1cm(-1). The catalytic activities of the microperoxidases towards K4[Fe(CN)6], L-tyrosine methyl ester and 2,2'-azino(bis(3-ethylbenzothiazoline-6-sulfonic acid)) (ABTS) have been investigated. It was found that all three microperoxidases exhibit peroxidase activity and that the reactions follow the generally accepted peroxidase reaction scheme [Biochem. J. 145 (1975) 93-103] with the exception that the initial formation of a Compound I analogue is the rate-limiting step for the whole process. The general activity trend was found to be MGGH approximately DGGH>HGGH. For each microperoxidase, DFT calculations (B3LYP) were made on the reactions of compounds 0, I and II with H+, e- and H+ + e-, respectively, in order to probe the possible relationship between the nature of the 2- and 4-substituents of the hemin and the observed reactivity. The computational modeling indicates that the relative energy differences are very small; solvation and electrostatic effects may be factors that decide the relative activities of the microperoxidases.
Collapse
Affiliation(s)
- Ekaterina S Ryabova
- Inorganic Chemistry, Center for Chemistry and Chemical Engineering, Lund University, Box 124, SE-221 00 Lund, Sweden
| | | | | | | | | | | | | | | |
Collapse
|
11
|
Rath SP, Olmstead MM, Balch AL. The Effects of Axial Ligands on Electron Distribution and Spin States in Iron Complexes of Octaethyloxophlorin, Intermediates in Heme Degradation. J Am Chem Soc 2004; 126:6379-86. [PMID: 15149235 DOI: 10.1021/ja0316014] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The results presented here show that the nature of the axial ligand can alter the distribution of electrons between the metal and the porphyrin in complexes where there is an oxygen atom replacing one of the meso protons. The complexes (1-MeIm)(2)Fe(III)(OEPO) and (2,6-xylylNC)(2)Fe(II)(OEPO(*)) (where OEPO is the trianionic octaethyloxophlorin ligand and OEPO(*) is the dianionic octaethyloxophlorin radical) were prepared by addition of an excess of the appropriate axial ligand to a slurry of [Fe(III)(OEPO)](2) in chloroform under anaerobic conditions. The magnetic moment of (2,6-xylylNC)(2)Fe(II)(OEPO(*)) is temperature invariant and consistent with a simple S = (1)/(2) ground state. This complex with an EPR resonance at g = 2.004 may be considered as a model for the free-radical like EPR signal seen when the meso-hydroxylated heme/heme oxygenase complex is treated with carbon monoxide. In contrast, the magnetic moment of (1-MeIm)(2)Fe(III)(OEPO) drops with temperature and indicates a spin-state change from an S = (5)/(2) or an admixed S = (3)/(2),(5)/(2) state at high temperatures (near room temperature) to an S = (1)/(2) state at temperatures below 100 K. X-ray diffraction studies show that each complex crystallizes in centrosymmetric form with the expected six-coordinate geometry. The structure of (1-MeIm)(2)Fe(III)(OEPO) has been determined at 90, 129, and 296 K and shows a gradual and selective lengthening of the Fe-N(axial bond). This behavior is consistent with population of a higher spin state at elevated temperatures.
Collapse
Affiliation(s)
- Sankar Prasad Rath
- Department of Chemistry, University of California, Davis, California 95616, USA
| | | | | |
Collapse
|
12
|
Production of hydrogen peroxide from carbon monoxide, water and oxygen over alumina-supported Ni catalysts. ACTA ACUST UNITED AC 2004. [DOI: 10.1016/j.molcata.2003.09.021] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
|
13
|
Collman JP, Boulatov R, Sunderland CJ, Fu L. Functional Analogues of CytochromecOxidase, Myoglobin, and Hemoglobin. Chem Rev 2004; 104:561-88. [PMID: 14871135 DOI: 10.1021/cr0206059] [Citation(s) in RCA: 518] [Impact Index Per Article: 25.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- James P Collman
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
| | | | | | | |
Collapse
|
14
|
Szterenberg L, Latos-Grazyński L, Wojaczyński J. Metallobiliverdin radicals--DFT studies. Chemphyschem 2003; 4:691-8. [PMID: 12901300 DOI: 10.1002/cphc.200200611] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Several aspects of the molecular and electronic structure of biliverdin derivatives have been studied using density functional theory (DFT). The calculations have been performed for complexes of trianion (BvO2)3- and dianion [BvO(OH)]2-, derived from two tautomeric forms of biliverdin, BvO2H3 and [BvO(OH)]H2, with redox innocent metal ions: lithium(I), zinc(II), and gallium(III). One-electron-oxidized and reduced forms of each complex (cation and anion radicals) have been also considered. The molecular structures of all species investigated are characterized by a helical arrangement of tetrapyrrolic ligands with the metal ion lying in the plane formed by the two central pyrrole rings. The spin density distribution in four types of metallobiliverdin radicals--[(BvO2.)Mn+]n-2,[[BvO(OH).]Mn+]n-1 (cation radicals),[(BvO2.)Mn+]n-4,[[BvO(OH).]Mn+]n-3 (anion radicals)--has been investigated. In general, the absolute values of spin density on meso carbon atoms were larger than for the beta-carbon atoms. Sign alteration of spin density has been found for meso positions, and also for the beta-carbon atoms of at least two pyrrole rings. The calculated spin density maps accounted for the essential NMR spectroscopic features of iron biliverdin derivatives, including the considerable isotropic shifts detected for the meso resonances and shift alteration at the meso and beta-positions.
Collapse
Affiliation(s)
- Ludmiła Szterenberg
- Department of Chemistry, University of Wrocław, 14 F. Joliot-Curie St., 50-383 Wrocław, Poland
| | | | | |
Collapse
|
15
|
Colas C, Ortiz de Montellano PR. Autocatalytic radical reactions in physiological prosthetic heme modification. Chem Rev 2003; 103:2305-32. [PMID: 12797831 DOI: 10.1021/cr0204303] [Citation(s) in RCA: 119] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Christophe Colas
- Department of Pharmaceutical Chemistry, School of Pharmacy, University of California, San Francisco, California 94143-0446, USA
| | | |
Collapse
|
16
|
Avila L, Huang HW, Damaso CO, Lu S, Moënne-Loccoz P, Rivera M. Coupled oxidation vs heme oxygenation: insights from axial ligand mutants of mitochondrial cytochrome b5. J Am Chem Soc 2003; 125:4103-10. [PMID: 12670231 DOI: 10.1021/ja029311v] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Mutation of His-39, one of the axial ligands in rat outer mitochondrial membrane cytochrome b(5) (OM cyt b(5)), to Val produces a mutant (H39V) capable of carrying out the oxidation of heme to biliverdin when incubated with hydrazine and O(2). The reaction proceeds via the formation of an oxyferrous complex (Fe(II)(-)O(2)) that is reduced by hydrazine to a ferric hydroperoxide (Fe(III)(-)OOH) species. The latter adds a hydroxyl group to the porphyrin to form meso-hydroxyheme. The observation that catalase does not inhibit the oxidation of the heme in the H39V mutant is consistent with the formation of a coordinated hydroperoxide (Fe(III)(-)OOH), which in heme oxygenase is the precursor of meso-hydroxyheme. By comparison, mutation of His-63, the other axial ligand in OM cyt b(5), to Val results in a mutant (H63V) capable of oxidizing heme to verdoheme in the absence of catalase. However, the oxidation of heme by H63V is completely inhibited by catalase. Furthermore, whereas the incubation of Fe(III)(-)H63V with H(2)O(2) leads to the nonspecific degradation of heme, the incubation of Fe(II)(-)H63V with H(2)O(2) results in the formation of meso-hydroxyheme, which upon exposure to O(2) is rapidly converted to verdoheme. These findings revealed that although meso-hydroxyheme is formed during the degradation of heme by the enzyme heme oxygenase or by the process of coupled oxidation of model hemes and hemoproteins not involved in heme catabolism, the corresponding mechanisms by which meso-hydroxyheme is generated are different. In the coupled oxidation process O(2) is reduced to noncoordinated H(2)O(2), which reacts with Fe(II)-heme to form meso-hydroxyheme. In the heme oxygenation reaction a coordinated O(2) molecule (Fe(II)(-)O(2)) is reduced to a coordinated peroxide molecule (Fe(III)(-)OOH), which oxidizes heme to meso-hydroxyheme.
Collapse
Affiliation(s)
- Ludivina Avila
- Department of Chemistry, Oklahoma State University, Stillwater, Oklahoma 74078-3071, USA
| | | | | | | | | | | |
Collapse
|
17
|
Paul S, Barik AK, Peng SM, Kar SK. Novel copper(II) induced formation of a porphyrinogen derivative: X-ray structural, spectroscopic, and electrochemical studies of porphyrinogen complexes of Cu(II) and Co(III) complex of a trispyrazolyl tripodal ligand. Inorg Chem 2002; 41:5803-9. [PMID: 12401086 DOI: 10.1021/ic0112185] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Copper(II) complexes of a novel pyrazole containing porphyrinogen and cobalt(III) and zinc(II) complexes of a pyrazole containing tripodal ligand having N-donor atoms have been investigated. 5-Methyl-3-formylpyrazole (MPA) on reaction with copper(II) nitrate or perchlorate in the presence of tris(2-aminoethyl)amine (tren) forms novel pyrazole-based porphyrinogen complexes [Cu(T(3)-porphyrinogen)(H(2)O)](NO(3))(2) (1a) and [Cu(T(3)-porphyrinogen)(H(2)O)](ClO(4))(2) (1b) where T(3)-porphyrinogen is 1,6,11,16-tetraaza-5,10,15,20-tetrahydroxy-2,7,12,17-tetramethylporphyrinogen. The same products are also obtained when tren is replaced by triethylamine. By contrast, the reaction between MPA, tren, and cobalt(II) perchlorate produces the cobalt(III) complex [Co(HMPz(3)tren)]ClO(4) (2) derived from the tripodal Schiff base tris[4-(3-(5-methyl-pyrazolyl)-3-aza-3-butenyl]amine (H(3)MPz(3)tren). The X-ray crystal structures of the copper(II) complexes (1a and 1b) and the cobalt(III) complex (2) have been determined. The structures show distorted square pyramidal coordination environments for 1a and 1b with the water molecule occupying the apical site, while for complex 2 a distorted octahedral geometry is obtained. Data for 1a follow: a = 19.476(3) A, b = 9.4116(8) A, c = 14.204(3) A; alpha = 90 degrees = gamma, beta = 107.58(2) degrees; V = 2482.0(7) A(3), Z = 4. Data for 1b follow: a = 20.967(3) A, b = 9.1563(18) A, c = 14.858(4) A; alpha = 90 degrees = gamma, beta = 108.44(3) degrees; V = 2706.0(10) A(3), Z = 4. Data for 2 follow: a = 21.293(3) A, b = 12.724(2) A, c = 19.777(4) A; alpha = 90 degrees = gamma, beta = 93.03(2) degrees; V = 5350.6(15) A(3), Z = 8. All three complexes crystallize in the monoclinic crystal system with the C2/c space group. The complexes are further characterized by UV-vis, IR, EPR, and electrochemical studies.
Collapse
Affiliation(s)
- Sachindranath Paul
- Department of Chemistry, SreeChaitanya College, Habra, North 24 Parganas, West Bengal, India
| | | | | | | |
Collapse
|
18
|
Ma Z, Jia R, Liu C, Mi Z. Production of Hydrogen Peroxide from Carbon Monoxide, Water, and Oxygen over Alumina Supported Amorphous Ni Catalysts. CHEM LETT 2002. [DOI: 10.1246/cl.2002.884] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
|
19
|
Abstract
A flexible oxophlorin macrocycle, which allows the location of labile hydrogen atoms alternatively at the pyrrole nitrogen, oxygen, or meso-carbon atoms, has been studied by density functional theory (DFT). DFT calculations were carried out on oxophlorin 1, 5-hydroxyporphyrin 2, and two isomers of oxophlorin 3 and 4 (the proton added at the tetrahedral C(15) or the C(10) meso-carbon, respectively). The oxophlorin-hydroxyporphyrin structural changes are appropriately reflected by the significant changes of the meso carbon-oxygen bond lengths, which are in the limits of typical C=O and C-O distances. The rearrangement that creates the iso-oxophlorin macrocycle 3 (4) results in near tetrahedral geometry around the C(15) (C(10)) carbon atom, with the C(14)-C(15) and C(15)-C(16) (C(9)-C(10) and C(10)-C(11)) bond lengths corresponding to a single C-C bond. 5-Hydroxyporphyrin 2 is aromatic and has a bond pattern resembling that of regular porphyrin. In 1, 3, and 4, a localization of single and double bonds was seen, which agrees with the nonaromatic nature of oxophlorin, or isooxophlorin. The relative stability decreases in the order: 2 (0) > 3 (4.85) > 1 (5.11) > 4 (10.04) > 3-cis (12.89) (the number in parentheses is the relative energy, in kcal mol-1). The energy difference between the NH-cis and NH-trans tautomers, which is 8.04 kcal mol-1 for 3, results from a destabilizing NH-NH cis-interaction. DFT calculations were performed on the oxophlorin dianion radical (OP.)2- and a series of metallooxophlorin radicals ([(OP.)LiI]-, [(OP.)ZnII], [(OP.)GaIII]+, and (OP.)GaIIIF, in order to assess their electronic structures. Typically, the largest atomic spin density was found at the C(10) (C(20)) and C(15) meso positions, with the spin density at C(15) being twice as large as that at C(10). The spin density at the C(5) atom is negligible. A large spin density was found at the O(5) oxygen atom. The amount of spin density at the meso positions decreased as the cationic charge increased. When considering the absolute values of the spin densities, the opposite trend was observed at the pyrrolic carbon atoms. The spin density at the nucleus (Fermi contact terms) has also been analyzed. The spin distributions of iron oxophlorins determined by NMR were attributed to an oxophlorin radical electronic structure. The calculated spin density maps accounted for the essential NMR spectroscopic features of important intermediates in the heme degradation process--iron oxophlorin complexes. The DFT calculations reproduced the following spectroscopic patterns: a) |delta H(15)|>|delta H(10)|>>|delta (beta-H)|, b) a sign alteration of the contact shifts for identical substituents located on the same pyrrole ring.
Collapse
Affiliation(s)
- Ludmiła Szterenberg
- Department of Chemistry, University of Wrocław, 14F. Joliot-Curie St. 50-383 Wrocław, Poland
| | | | | |
Collapse
|
20
|
Wojaczyński J, Stępień M, Latos‐Grażyński L. Monomeric and Dimeric Iron(III) Complexes of 5‐Hydroxy‐10,15,20‐triphenylporphyrin: Formation of Cyano and Pyridine Complexes of (5‐Oxo‐10,15,20‐triphenylphlorin)iron. Eur J Inorg Chem 2002. [DOI: 10.1002/1099-0682(200207)2002:7<1806::aid-ejic1806>3.0.co;2-#] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Jacek Wojaczyński
- Department of Chemistry, University of Wrocław, 14 F. Joliot‐Curie St., 50‐383 Wrocław, Poland
| | - Marcin Stępień
- Department of Chemistry, University of Wrocław, 14 F. Joliot‐Curie St., 50‐383 Wrocław, Poland
| | | |
Collapse
|
21
|
Kalish H, Camp JE, Stepień M, Latos-Grazyński L, Balch AL. Reactivity of mono-meso-substituted iron(II) octaethylporphyrin complexes with hydrogen peroxide in the absence of dioxygen. Evidence for nucleophilic attack on the heme. J Am Chem Soc 2001; 123:11719-27. [PMID: 11716729 DOI: 10.1021/ja011545b] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Treatment of the mono-meso-substituted iron(II) octaethylporphyrin complexes, (py)2Fe(II)(meso-NO2-OEP), (py)2Fe(II)(meso-CN-OEP), (py)2Fe(II)(meso-HC(O)-OEP), (py)2Fe(II)(meso-Cl-OEP), (py)2Fe(II)(meso-OMe-OEP), (py)2Fe(II)(meso-Ph-OEP), and (py)2Fe(II)(meso-n-Bu-OEP), with hydrogen peroxide in pyridine-d5 at -30 degrees C in the strict absence of dioxygen has been monitored by 1H NMR spectroscopy. The product oxophlorin complexes are stable as long as the samples are protected from exposure to dioxygen. Hydrogen peroxide reacts cleanly with mono-meso-substituted iron(II) porphyrins in pyridine solution under an inert atmosphere to form mixtures of three possible oxygenation products, (py)2Fe(cis-meso-R-OEPO), (py)2Fe(trans-meso-R-OEPO), and (py)2Fe(OEPO). The yields of (py)2Fe(OEPO), which results from replacement of the unique meso substituent, as a function of the identity of the meso substituent decrease in the order NO2 > HC(O) approximately equal to CN approximately equal to Cl > OMe > Ph, Bu, which suggests that the species responsible for attack on the porphyrin periphery is nucleophilic in nature. A mechanism involving isoporphyrin formation through attack of hydroxide ion on a cationic iron porphyrin with an oxidized porphyrin ring is suggested. The identity of the unique meso functionality also affects the regiospecificity of substitution when the unique meso group is retained. Although random attack at the two different meso sites is expected to yield a cis/trans product ratio of 2, the observed ratios vary in the following order: cyano, 5.0; n-butyl, 4.9; chloro, 3.2; formyl, 2.6; methoxy, 1.9; phenyl 1.4.
Collapse
Affiliation(s)
- H Kalish
- Department of Chemistry, University of California, Davis, California 95616, USA
| | | | | | | | | |
Collapse
|
22
|
Latos-Grazyński L, Wojaczyński J, Koerner R, Johnson JJ, Balch AL. Verdoheme reactivity. Remarkable paramagnetically shifted (1)H NMR spectra of intermediates from the addition of hydroxide or methoxide with Fe(II) and Fe(III) verdohemes. Inorg Chem 2001; 40:4971-7. [PMID: 11531446 DOI: 10.1021/ic010227a] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Studies of the reaction of 5-oxaporphyrin iron complexes (verdohemes) with methoxide ion or hydroxide ion have been undertaken to understand the initial step of ring opening of verdohemes. High-spin [ClFe(III)(OEOP)] undergoes a complex series of reactions upon treatment with hydroxide ion in chloroform, and similar species are also detected in dichloromethane, acetonitrile, and dimethyl sulfoxide. Three distinct paramagnetic intermediates have been identified by (1)H NMR spectroscopy. These reactive species are formed by addition of hydroxide to the macrocycle and to the iron as an axial ligand. Treatment of low-spin [(py)(2)Fe(II)(OEOP)]Cl (OEOP is the monoanion of octaethyl-5-oxaporphyrin) with excess methoxide ion in pyridine solution produces [(py)(n)()Fe(II)(OEBOMe)] (n = 1 or 2) ((OEBOMe), dianion of octaethylmethoxybiliverdin), whose (1)H NMR spectrum undergoes marked alteration upon addition of further amounts of methoxide ion. An identical (1)H NMR spectrum, which is characterized by methylene resonances with both upfield and downfield paramagnetic shifts, is formed upon treatment of [Fe(II)(OEBOMe)](2) with methoxide in pyridine solution and results from the formation of [(MeO)Fe(II)(OEBOMe)](-).
Collapse
Affiliation(s)
- L Latos-Grazyński
- Department of Chemistry, University of California, Davis, California 95616, USA
| | | | | | | | | |
Collapse
|
23
|
Wang J, Li Y, Ma D, Kalish H, Balch AL, La Mar GN. Solution NMR determination of the seating(s) of meso-nitro-etioheme-1 in myoglobin: implications for steric constraints to meso position access in heme degradation by coupled oxidation. J Am Chem Soc 2001; 123:8080-8. [PMID: 11506564 DOI: 10.1021/ja010651a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The highly stereoselective cleavage of hemin in myoglobin by coupled oxidation has been attributed to steric barriers that leave more space near the alpha- than the other meso-positions. The steric barriers near meso positions in myoglobin have been investigated by establishing the thermodynamics and dynamics of possible seatings in the pocket of horse myoglobin of a four-fold symmetric etioheme I modified with a bulky nitro group at a single meso position. The cyanomet complex of this reconstituted myoglobin exhibits three sets of (1)H NMR resonances that are linked dynamically and occur in approximate populations ratios of 0.82:0.10:0.08. Two dimensional (1)H NMR has been used to assign the hemin and heme pocket resonances in the major isomer in solution and to determine that the hemin is oriented with the nitro group at the canonical gamma-meso position of native hemin. The dominance of this isomer is attributed to the solvent exposure of this portion of the hemin which stabilizes the highly polar nitro group. Using a combination of magnetization transfer among methyl groups of the three isomers due to "hopping" of the hemin about its normal, the assigned resonances of an isoelectronic, bis-cyano complex of meso-nitro-etioheme I, and the known essentially constant rhombic perturbation of heme pocket sites on the hyperfine shifts of heme methyl (Kolczak, U.; Hauksson, J. B.; Davis, N. L.; Pande, U.; de Ropp, J. S.; Langry, K. C.; Smith, K. M.; LaMar, G. N. J. Am. Chem. Soc. 1999, 121, 835-843); the two minor isomers are shown to place their bulky nitro group at the canonical delta-meso (8%) and alpha-meso positions (10%). The comparable population of the isomers with nitro groups at the hydrophobic alpha- and delta-meso positions dictates that, while the static crystal structure finds more room near the alpha-meso position, the deformation at minimal energetic expense near the alpha- and delta-meso positions is comparable. These results argue that factors other than simple steric influences control the selectivity of the ring cleavage in myoglobin.
Collapse
Affiliation(s)
- J Wang
- Department of Chemistry, University of California, Davis, California 95616, USA
| | | | | | | | | | | |
Collapse
|