1
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Kubyshkin V, Rubini M. Proline Analogues. Chem Rev 2024; 124:8130-8232. [PMID: 38941181 DOI: 10.1021/acs.chemrev.4c00007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/30/2024]
Abstract
Within the canonical repertoire of the amino acid involved in protein biogenesis, proline plays a unique role as an amino acid presenting a modified backbone rather than a side-chain. Chemical structures that mimic proline but introduce changes into its specific molecular features are defined as proline analogues. This review article summarizes the existing chemical, physicochemical, and biochemical knowledge about this peculiar family of structures. We group proline analogues from the following compounds: substituted prolines, unsaturated and fused structures, ring size homologues, heterocyclic, e.g., pseudoproline, and bridged proline-resembling structures. We overview (1) the occurrence of proline analogues in nature and their chemical synthesis, (2) physicochemical properties including ring conformation and cis/trans amide isomerization, (3) use in commercial drugs such as nirmatrelvir recently approved against COVID-19, (4) peptide and protein synthesis involving proline analogues, (5) specific opportunities created in peptide engineering, and (6) cases of protein engineering with the analogues. The review aims to provide a summary to anyone interested in using proline analogues in systems ranging from specific biochemical setups to complex biological systems.
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Affiliation(s)
| | - Marina Rubini
- School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
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2
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Ding C, Ren Y, Yu Y, Yin G. Ligand-modulated nickel-catalyzed regioselective silylalkylation of alkenes. Nat Commun 2023; 14:7670. [PMID: 37996492 PMCID: PMC10667358 DOI: 10.1038/s41467-023-43642-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 11/15/2023] [Indexed: 11/25/2023] Open
Abstract
Organosilicon compounds have shown tremendous potential in drug discovery and their synthesis stimulates wide interest. Multicomponent cross-coupling of alkenes with silicon reagents is used to yield complex silicon-containing compounds from readily accessible feedstock chemicals but the reaction with simple alkenes remains challenging. Here, we report a regioselective silylalkylation of simple alkenes, which is enabled by using a stable Ni(II) salt and an inexpensive trans-1,2-diaminocyclohexane ligand as a catalyst. Remarkably, this reaction can tolerate a broad range of olefins bearing various functional groups, including alcohol, ester, amides and ethers, thus it allows for the efficient and selective assembly of a diverse range of bifunctional organosilicon building blocks from terminal alkenes, alkyl halides and the Suginome reagent. Moreover, an expedient synthetic route toward alpha-Lipoic acid has been developed by this methodology.
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Affiliation(s)
- Chao Ding
- The Institute for Advanced Studies, Wuhan University, 430072, Wuhan, Hubei, People's Republic of China
| | - Yaoyu Ren
- The Institute for Advanced Studies, Wuhan University, 430072, Wuhan, Hubei, People's Republic of China
| | - Yue Yu
- The Institute for Advanced Studies, Wuhan University, 430072, Wuhan, Hubei, People's Republic of China
| | - Guoyin Yin
- The Institute for Advanced Studies, Wuhan University, 430072, Wuhan, Hubei, People's Republic of China.
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3
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Biremond T, Riomet M, Jubault P, Poisson T. Photocatalytic and Electrochemical Borylation and Silylation Reactions. CHEM REC 2023; 23:e202300172. [PMID: 37358334 DOI: 10.1002/tcr.202300172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 06/05/2023] [Indexed: 06/27/2023]
Abstract
Due to their high versatility borylated and silylated compounds are inevitable synthons for organic chemists. To escape the classical hydroboration/hydrosilylation paradigm, chemists turned their attention to more modern and green methods such as photoredox chemistry and electrosynthesis. This account focuses on novel methods for the generation of boryl and silyl radicals to forge C-B and C-Si bonds from our group.
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Affiliation(s)
- Tony Biremond
- Normandie Univ., INSA Rouen, UNIROUEN, CNRS, COBRA (UMR 6014), 76000, Rouen, France
| | - Margaux Riomet
- Normandie Univ., INSA Rouen, UNIROUEN, CNRS, COBRA (UMR 6014), 76000, Rouen, France
| | - Philippe Jubault
- Normandie Univ., INSA Rouen, UNIROUEN, CNRS, COBRA (UMR 6014), 76000, Rouen, France
| | - Thomas Poisson
- Normandie Univ., INSA Rouen, UNIROUEN, CNRS, COBRA (UMR 6014), 76000, Rouen, France
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4
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Chen F, Liu L, Zeng W. Synthetic strategies to access silacycles. Front Chem 2023; 11:1200494. [PMID: 37398981 PMCID: PMC10313416 DOI: 10.3389/fchem.2023.1200494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Accepted: 05/24/2023] [Indexed: 07/04/2023] Open
Abstract
In comparison with all-carbon parent compounds, the incorporation of Si-element into carboskeletons generally endows the corresponding sila-analogues with unique biological activity and physical-chemical properties. Silacycles have recently shown promising application potential in biological chemistry, pharmaceuticals industry, and material chemistry. Therefore, the development of efficient methodology to assemble versatile silacycles has aroused increasing concerns in the past decades. In this review, recent advances in the synthesis of silacycle-system are briefly summarized, including transition metal-catalytic and photocatalytic strategies by employing arylsilanes, alkylsilane, vinylsilane, hydrosilanes, and alkynylsilanes, etc. as starting materials. Moreover, a clear presentation and understanding of the mechanistic aspects and features of these developed reaction methodologies have been high-lighted.
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5
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Gao X, Yuan C, Tan E, Li Z, Cheng Y, Xiao J, Rong G. Dual-responsive bioconjugates bearing a bifunctional adaptor for robust cytosolic peptide delivery. J Control Release 2023; 355:675-684. [PMID: 36791993 DOI: 10.1016/j.jconrel.2023.02.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Revised: 02/08/2023] [Accepted: 02/09/2023] [Indexed: 02/17/2023]
Abstract
Peptide drugs have been successfully used for the treatment of various diseases. However, it is still challenging to develop therapeutic peptides working on intracellular targets due to their poor membrane permeability. Here, we proposed a type of dual-responsive bioconjugates bearing a heterobifunctional adaptor containing both aldehyde and catechol moieties for efficient cytosolic peptide delivery. Hydrazine-terminated cargo peptides were tagged to a boronated dendrimer with the help of the adaptor via dynamic acylhydrazone and catechol‑boronate linkages. The bioconjugates efficiently delivered peptides with distinct physicochemical properties into various cells, and could release the cargo peptides triggered by intracellular reactive oxygen species and endolysosomal acidity, restoring the biofunctions of delivered peptides. In addition, the designed complexes efficiently delivered a pro-apoptotic peptide into osteosarcoma cancer cells and successfully inhibited the tumor growth both in vitro and in vivo. This study provides a universal and efficient platform for cytosolic therapeutic peptide delivery to intracellular targets for treating various diseases.
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Affiliation(s)
- Xin Gao
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai 200003, PR China
| | - Chunyang Yuan
- Shanghai Key Laboratory of Regulatory Biology, School of Life Sciences, East China Normal University, Shanghai 200241, PR China
| | - Echuan Tan
- South China Advanced Institute for Soft Matter Science and Technology, School of Emergent Soft Matter, South China University of Technology, Guangzhou 510640, PR China
| | - Zhan Li
- College of Polymer Science and Engineering, State Key Laboratory of Polymer Materials Engineering, Sichuan University, Chengdu 610065, PR China
| | - Yiyun Cheng
- Shanghai Key Laboratory of Regulatory Biology, School of Life Sciences, East China Normal University, Shanghai 200241, PR China.
| | - Jianru Xiao
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai 200003, PR China.
| | - Guangyu Rong
- Shanghai Key Laboratory of Regulatory Biology, School of Life Sciences, East China Normal University, Shanghai 200241, PR China; South China Advanced Institute for Soft Matter Science and Technology, School of Emergent Soft Matter, South China University of Technology, Guangzhou 510640, PR China.
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6
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Kashif Khan R, Meanwell NA, Hager HH. Pseudoprolines as stereoelectronically tunable proline isosteres. Bioorg Med Chem Lett 2022; 75:128983. [PMID: 36096342 DOI: 10.1016/j.bmcl.2022.128983] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Revised: 08/29/2022] [Accepted: 09/05/2022] [Indexed: 11/18/2022]
Abstract
The cyclic structure of proline (Pro) confers unique conformational properties on this natural amino acid that influences polypeptide structure and function. Pseudoprolines are a family of Pro isosteres that incorporate a heteroatom, most prominently oxygen or sulfur but also silicon and selenium, to replace the Cβ or Cγ carbon atom of the pyrrolidine ring. These readily synthetically accessible structural motifs can facilitate facile molecular editing in a fashion that allows modulation of the amide bond topology of dipeptide elements and influence over ring pucker. While the properties of pseudoprolines have been exploited most prominently in the design of oligopeptide analogues, they have potential application in the design and optimization of small molecules. In this Digest, we summarize the physicochemical properties of pseudoprolines and illustrate their potential in drug discovery by surveying examples of applications in the design of bioactive molecules.
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Affiliation(s)
- R Kashif Khan
- Small Molecule Drug Discovery, Bristol Myers Squibb Research and Early Development, 100 Binney Street, Cambridge, MA 02142, USA.
| | - Nicholas A Meanwell
- Small Molecule Drug Discovery, Bristol Myers Squibb Research and Early Development, P.O. Box 4000, Princeton, NJ 08543-4000, USA.
| | - Harry H Hager
- Small Molecule Drug Discovery, Bristol Myers Squibb Research and Early Development, 200 Cambridgepark Drive, Cambridge, MA 02140, USA.
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7
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Gao L, Song Z, Wang W. Synthetic Approaches for the Construction of Five- and Six-Membered Silaazacycles. SYNTHESIS-STUTTGART 2022. [DOI: 10.1055/a-1755-3832] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
AbstractSilaazacycles (or azasilacycles), containing both nitrogen and silicon atoms, are appealing ring structures in the development of silicon-containing functional molecules. The development of general and efficient methods towards these motifs has therefore attracted considerable attention from synthetic chemists. This short review intends to highlight representative advances in the synthesis of five- and six-membered silaazacycles.1 Introduction2 Five-Membered Silaazacycles2.1 Five-Membered Silaazacycles bearing a 1,2-N/Si Moiety2.2 Five-Membered Silaazacycles bearing a 1,3-N/Si Moiety3 Six-Membered Silaazacycles3.1 Six-Membered Silaazacycles bearing a 1,2-N/Si Moiety3.2 Six-Membered Silaazacycles bearing a 1,3-N/Si Moiety3.3 Six-Membered Silaazacycles bearing a 1,4-N/Si Moiety4 Conclusion
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8
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Kubyshkin V, Bürck J, Babii O, Budisa N, Ulrich AS. Remarkably high solvatochromism in the circular dichroism spectra of the polyproline-II conformation: limitations or new opportunities? Phys Chem Chem Phys 2021; 23:26931-26939. [PMID: 34825904 DOI: 10.1039/d1cp04551b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Circular dichroism is a conventional method for studying the secondary structures of peptides and proteins and their transitions. While certain circular dichroism features are characteristic of α-helices and β-strands, the third most abundant secondary structure, the polyproline-II helix, does not exhibit a strictly conserved spectroscopic appearance. Due to its extended nature, the polyproline-II helix is highly accessible to the surrounding solvent; thus, the environment has a critical influence on the lineshape of the circular dichroism spectra of this structure. To showcase possible effects due to the medium, in this work, we report an experimental spectroscopic study of polyproline-II-forming oligomeric peptides in various environments: solvents, detergent micelles, and liposomes. Strikingly, the examination of an oligomeric peptide in a solvent series showed a remarkable 7 nm solvatochromic shift in the main negative band starting with hexafluoropropan-2-ol and moving to hexane. Furthermore, a previously predicted positive band below 200 nm was discovered in the spectra in nonpolar environments. In isotropic liposomes, the expected transition to the transmembrane state correlated with the appearance of a positive band at 228 nm. Our results demonstrate that changes in solvation should be taken into consideration when assessing the circular dichroism spectra of peptides expected to adopt the polyproline-II conformation. Although this precaution may complicate spectral analysis, characterization of solvent-induced spectral changes can generate new opportunities for testing the location of peptides in complex systems such as micelles or lipid bilayers.
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Affiliation(s)
- Vladimir Kubyshkin
- Department of Chemistry, University of Manitoba, 144 Dysart Rd., Winnipeg, Manitoba, R3T 2N2, Canada.
| | - Jochen Bürck
- Institute of Biological Interfaces (IBG-2), Karlsruhe Institute of Technology, POB 3640, Karlsruhe 76021, Germany
| | - Oleg Babii
- Institute of Biological Interfaces (IBG-2), Karlsruhe Institute of Technology, POB 3640, Karlsruhe 76021, Germany
| | - Nediljko Budisa
- Department of Chemistry, University of Manitoba, 144 Dysart Rd., Winnipeg, Manitoba, R3T 2N2, Canada. .,Institute of Chemistry, Technical University of Berlin, Müller-Breslau-Str. 10, Berlin 10623, Germany
| | - Anne S Ulrich
- Institute of Biological Interfaces (IBG-2), Karlsruhe Institute of Technology, POB 3640, Karlsruhe 76021, Germany.,Institute of Organic Chemistry (IOC), Karlsruhe Institute of Technology, Fritz-Haber-Weg 6, Karlsruhe 76131, Germany
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9
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Sarai N, Levin BJ, Roberts JM, Katsoulis DE, Arnold FH. Biocatalytic Transformations of Silicon-the Other Group 14 Element. ACS CENTRAL SCIENCE 2021; 7:944-953. [PMID: 34235255 PMCID: PMC8227617 DOI: 10.1021/acscentsci.1c00182] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Indexed: 05/30/2023]
Abstract
Significant inroads have been made using biocatalysts to perform new-to-nature reactions with high selectivity and efficiency. Meanwhile, advances in organosilicon chemistry have led to rich sets of reactions holding great synthetic value. Merging biocatalysis and silicon chemistry could yield new methods for the preparation of valuable organosilicon molecules as well as the degradation and valorization of undesired ones. Despite silicon's importance in the biosphere for its role in plant and diatom construction, it is not known to be incorporated into any primary or secondary metabolites. Enzymes have been found that act on silicon-containing molecules, but only a few are known to act directly on silicon centers. Protein engineering and evolution has and could continue to enable enzymes to catalyze useful organosilicon transformations, complementing and expanding upon current synthetic methods. The role of silicon in biology and the enzymes that act on silicon-containing molecules are reviewed to set the stage for a discussion of where biocatalysis and organosilicon chemistry may intersect.
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Affiliation(s)
- Nicholas
S. Sarai
- Division
of Chemistry and Chemical Engineering, California
Institute of Technology, 1200 East California Boulevard, Pasadena, California 91125, United States
| | - Benjamin J. Levin
- Division
of Chemistry and Chemical Engineering, California
Institute of Technology, 1200 East California Boulevard, Pasadena, California 91125, United States
| | - John M. Roberts
- Dow
Inc., Core R&D, 633 Washington Street, Midland, Michigan 48667, United
States
| | - Dimitris E. Katsoulis
- Dow
Silicones Corporation, 2200 West Salzburg Road, Auburn, Michigan 48611, United
States
| | - Frances H. Arnold
- Division
of Chemistry and Chemical Engineering, California
Institute of Technology, 1200 East California Boulevard, Pasadena, California 91125, United States
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10
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Chen F, Shao Y, Li M, Yang C, Su SJ, Jiang H, Ke Z, Zeng W. Photocatalyzed cycloaromatization of vinylsilanes with arylsulfonylazides. Nat Commun 2021; 12:3304. [PMID: 34083532 PMCID: PMC8175346 DOI: 10.1038/s41467-021-23326-2] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 04/26/2021] [Indexed: 02/05/2023] Open
Abstract
Sila-molecules have recently attracted attention due to their promising applications in medical and industrial fields. Compared with all-carbon parent compounds, the different covalent radius and electronegativity of silicon from carbon generally endow the corresponding sila-analogs with unique biological activity and physicochemical properties. Vinylsilanes feature both silyl-hyperconjugation effect and versatile reactivities, developing vinylsilane-based Smiles rearrangement will therefore provide an efficient platform to assemble complex silacycles. Here we report a practical Ir(III)-catalyzed cycloaromatization of ortho-alkynylaryl vinylsilanes with arylsulfonyl azides for delivering naphthyl-fused benzosiloles under visible-light photoredox conditions. The combination of experiments and density functional theory (DFT) energy profiles reveals the reaction mechanism involving α-silyl radical Smiles rearrangement. Arene-fused siloles have attracted interest due to their promising applications in electronic and optoelectronic devices. Here, the authors report Ir(III)-catalyzed cycloaromatization of ortho-alkynylaryl vinylsilanes with arylsulfonyl azides via α-silyl radical Smiles rearrangement for accessing naphthyl-fused benzosiloles under visible-light photoredox conditions.
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Affiliation(s)
- Fengjuan Chen
- Key Laboratory of Functional Molecular Engineering of Guangdong Province, School of Chemistry and Chemical Engineering, South China University of Technology, Guangzhou, China
| | - Youxiang Shao
- School of Materials Science and Engineering, PCFM Lab, Sun Yat-sen University, Guangzhou, China
| | - Mengke Li
- State Key Laboratory of Luminescent Materials and Devices, Institute of Polymer Optoelectronic Materials and Devices, South China University of Technology, Guangzhou, China
| | - Can Yang
- Key Laboratory of Functional Molecular Engineering of Guangdong Province, School of Chemistry and Chemical Engineering, South China University of Technology, Guangzhou, China
| | - Shi-Jian Su
- State Key Laboratory of Luminescent Materials and Devices, Institute of Polymer Optoelectronic Materials and Devices, South China University of Technology, Guangzhou, China.
| | - Huanfeng Jiang
- Key Laboratory of Functional Molecular Engineering of Guangdong Province, School of Chemistry and Chemical Engineering, South China University of Technology, Guangzhou, China
| | - Zhuofeng Ke
- School of Materials Science and Engineering, PCFM Lab, Sun Yat-sen University, Guangzhou, China.
| | - Wei Zeng
- Key Laboratory of Functional Molecular Engineering of Guangdong Province, School of Chemistry and Chemical Engineering, South China University of Technology, Guangzhou, China.
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11
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de Vries RH, Roelfes G. Cu(II)-Catalysed β-silylation of dehydroalanine residues in peptides and proteins. Chem Commun (Camb) 2020; 56:11058-11061. [PMID: 32812557 DOI: 10.1039/d0cc05026a] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
We report the efficient and selective Cu(ii)-catalysed β-silylation of naturally occurring dehydroalanine (Dha) residues in various ribosomally synthesized and post-translationally modified peptides (RiPPs). The method is also applicable to proteins, as was shown by the modification of a Dha residue that was chemically introduced into Small Ubiquitin-like Modifier (SUMO).
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Affiliation(s)
- Reinder H de Vries
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.
| | - Gerard Roelfes
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.
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12
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Fanelli R, Chastel A, Previti S, Hindié E, Vimont D, Zanotti-Fregonara P, Fernandez P, Garrigue P, Lamare F, Schollhammer R, Balasse L, Guillet B, Rémond E, Morgat C, Cavelier F. Silicon-Containing Neurotensin Analogues as Radiopharmaceuticals for NTS1-Positive Tumors Imaging. Bioconjug Chem 2020; 31:2339-2349. [DOI: 10.1021/acs.bioconjchem.0c00419] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Roberto Fanelli
- Institut des Biomolécules Max Mousseron, IBMM, UMR-5247, CNRS, Université de Montpellier, ENSCM, Place Eugène Bataillon, Montpellier 34095 Cedex 5, France
| | - Adrien Chastel
- University of Bordeaux, CNRS, EPHE, INCIA, UMR 5287, Bordeaux F-33000, France
- Nuclear Medicine Department, University Hospital of Bordeaux, Bordeaux F-33000, France
| | - Santo Previti
- Institut des Biomolécules Max Mousseron, IBMM, UMR-5247, CNRS, Université de Montpellier, ENSCM, Place Eugène Bataillon, Montpellier 34095 Cedex 5, France
| | - Elif Hindié
- University of Bordeaux, CNRS, EPHE, INCIA, UMR 5287, Bordeaux F-33000, France
- Nuclear Medicine Department, University Hospital of Bordeaux, Bordeaux F-33000, France
| | - Delphine Vimont
- University of Bordeaux, CNRS, EPHE, INCIA, UMR 5287, Bordeaux F-33000, France
| | | | - Philippe Fernandez
- University of Bordeaux, CNRS, EPHE, INCIA, UMR 5287, Bordeaux F-33000, France
- Nuclear Medicine Department, University Hospital of Bordeaux, Bordeaux F-33000, France
| | - Philippe Garrigue
- Aix-Marseille University, INSERM, Institut National de la Recherche Agronomique, Centre de Recherche en Cardiovasculaire et Nutrition, Marseille 13385, France
- Aix-Marseille University, Centre Européen de Recherche en Imagerie Médicale, Marseille 13005, France
| | - Frédéric Lamare
- University of Bordeaux, CNRS, EPHE, INCIA, UMR 5287, Bordeaux F-33000, France
- Nuclear Medicine Department, University Hospital of Bordeaux, Bordeaux F-33000, France
| | - Romain Schollhammer
- University of Bordeaux, CNRS, EPHE, INCIA, UMR 5287, Bordeaux F-33000, France
- Nuclear Medicine Department, University Hospital of Bordeaux, Bordeaux F-33000, France
| | - Laure Balasse
- Aix-Marseille University, INSERM, Institut National de la Recherche Agronomique, Centre de Recherche en Cardiovasculaire et Nutrition, Marseille 13385, France
| | - Benjamin Guillet
- Aix-Marseille University, INSERM, Institut National de la Recherche Agronomique, Centre de Recherche en Cardiovasculaire et Nutrition, Marseille 13385, France
- Aix-Marseille University, Centre Européen de Recherche en Imagerie Médicale, Marseille 13005, France
| | - Emmanuelle Rémond
- Institut des Biomolécules Max Mousseron, IBMM, UMR-5247, CNRS, Université de Montpellier, ENSCM, Place Eugène Bataillon, Montpellier 34095 Cedex 5, France
| | - Clément Morgat
- University of Bordeaux, CNRS, EPHE, INCIA, UMR 5287, Bordeaux F-33000, France
- Nuclear Medicine Department, University Hospital of Bordeaux, Bordeaux F-33000, France
| | - Florine Cavelier
- Institut des Biomolécules Max Mousseron, IBMM, UMR-5247, CNRS, Université de Montpellier, ENSCM, Place Eugène Bataillon, Montpellier 34095 Cedex 5, France
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13
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Rong G, Wang C, Chen L, Yan Y, Cheng Y. Fluoroalkylation promotes cytosolic peptide delivery. SCIENCE ADVANCES 2020; 6:eaaz1774. [PMID: 32851155 PMCID: PMC7423368 DOI: 10.1126/sciadv.aaz1774] [Citation(s) in RCA: 68] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2019] [Accepted: 06/30/2020] [Indexed: 05/10/2023]
Abstract
Cytosolic delivery of peptides remains a challenging task owing to their susceptibility to enzymatic degradation and the existence of multiple intracellular barriers. Here, we report a new strategy to address these issues by decoration of a fluorous tag on the terminal of cargo peptides. The fluorous-tagged peptides were assembled into nanostructures, efficiently internalized by cells via several endocytic pathways and released into the cytosol after endosomal escape. They were relatively stable against enzymatic degradation and showed much higher efficiency than nonfluorinated analogs and cell penetrant peptide-conjugated ones. The proposed strategy also efficiently delivered a proapoptotic peptide into specific sites in the cells and restored the function of cargo peptide after cytosolic delivery. The fluorous-tagged proapoptotic peptide efficiently inhibited tumor growth in vivo. This study provides an efficient fluorination strategy to promote the cytosolic delivery of peptides.
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Affiliation(s)
- Guangyu Rong
- Shanghai Key Laboratory of Regulatory Biology, East China Normal University, Shanghai 200241, China
| | - Changping Wang
- South China Advanced Institute for Soft Matter Science and Technology, School of Molecular Science and Engineering, South China University of Technology, Guangzhou 510640, China
| | - Lijie Chen
- Shanghai Key Laboratory of Regulatory Biology, East China Normal University, Shanghai 200241, China
| | - Yang Yan
- Shanghai Key Laboratory of Regulatory Biology, East China Normal University, Shanghai 200241, China
| | - Yiyun Cheng
- Shanghai Key Laboratory of Regulatory Biology, East China Normal University, Shanghai 200241, China
- South China Advanced Institute for Soft Matter Science and Technology, School of Molecular Science and Engineering, South China University of Technology, Guangzhou 510640, China
- Corresponding author.
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14
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Kubyshkin V. Polarity effects in 4-fluoro- and 4-(trifluoromethyl)prolines. Beilstein J Org Chem 2020; 16:1837-1852. [PMID: 32765799 PMCID: PMC7385359 DOI: 10.3762/bjoc.16.151] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2020] [Accepted: 07/06/2020] [Indexed: 12/14/2022] Open
Abstract
Fluorine-containing analogues of proline are valuable tools in engineering and NMR spectroscopic studies of peptides and proteins. Their use relies on the fundamental understanding of the interplay between the substituents and the main chain groups of the amino acid residue. This study aims to showcase the polarity-related effects that arise from the interaction between the functional groups in molecular models. Properties such as conformation, acid-base transition, and amide-bond isomerism were examined for diastereomeric 4-fluoroprolines, 4-(trifluoromethyl)prolines, and 1,1-difluoro-5-azaspiro[2.4]heptane-6-carboxylates. The preferred conformation on the proline ring originated from a preferential axial positioning for a single fluorine atom, and an equatorial positioning for a trifluoromethyl- or a difluoromethylene group. This orientation of the substituents explains the observed trends in the pK a values, lipophilicity, and the kinetics of the amide bond rotation. The study also provides a set of evidences that the transition state of the amide-bond rotation in peptidyl-prolyl favors C4-exo conformation of the pyrrolidine ring.
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15
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Yokoo H, Misawa T, Demizu Y. De Novo Design of Cell-Penetrating Foldamers. CHEM REC 2020; 20:912-921. [PMID: 32463155 DOI: 10.1002/tcr.202000047] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2020] [Revised: 05/11/2020] [Accepted: 05/13/2020] [Indexed: 12/18/2022]
Abstract
Cell-penetrating peptides (CPPs) have gained much attention as carriers of hydrophilic molecules, such as drugs, peptides, and nucleic acids, into cells. CPPs are mainly composed of cationic amino acid residues, which play an important role in their intracellular uptake via interactions with acidic groups on cell surfaces. In addition, the secondary structures of CPPs also affect their cell-membrane permeability. Based on this knowledge, a variety of cell-penetrating foldamers (oligomers that form organized secondary structures) have been developed to date. In this account, we describe recent attempts to develop cell-penetrating foldamers containing various building blocks, and their application as DDS carriers.
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Affiliation(s)
- Hidetomo Yokoo
- Division of Organic Chemistry, National Institute of Health Sciences, 3-25-26, Tonomachi, Kawasaki, Kanagawa, 210-9501, Japan.,Graduate School of Medical Life Science, Yokohama City University, 1-7-29, Yokohama, Kanagawa, 230-0045, Japan
| | - Takashi Misawa
- Division of Organic Chemistry, National Institute of Health Sciences, 3-25-26, Tonomachi, Kawasaki, Kanagawa, 210-9501, Japan
| | - Yosuke Demizu
- Division of Organic Chemistry, National Institute of Health Sciences, 3-25-26, Tonomachi, Kawasaki, Kanagawa, 210-9501, Japan.,Graduate School of Medical Life Science, Yokohama City University, 1-7-29, Yokohama, Kanagawa, 230-0045, Japan
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16
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Nieto-Domínguez M, Nikel PI. Intersecting Xenobiology and Neometabolism To Bring Novel Chemistries to Life. Chembiochem 2020; 21:2551-2571. [PMID: 32274875 DOI: 10.1002/cbic.202000091] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Revised: 04/09/2020] [Indexed: 12/19/2022]
Abstract
The diversity of life relies on a handful of chemical elements (carbon, oxygen, hydrogen, nitrogen, sulfur and phosphorus) as part of essential building blocks; some other atoms are needed to a lesser extent, but most of the remaining elements are excluded from biology. This circumstance limits the scope of biochemical reactions in extant metabolism - yet it offers a phenomenal playground for synthetic biology. Xenobiology aims to bring novel bricks to life that could be exploited for (xeno)metabolite synthesis. In particular, the assembly of novel pathways engineered to handle nonbiological elements (neometabolism) will broaden chemical space beyond the reach of natural evolution. In this review, xeno-elements that could be blended into nature's biosynthetic portfolio are discussed together with their physicochemical properties and tools and strategies to incorporate them into biochemistry. We argue that current bioproduction methods can be revolutionized by bridging xenobiology and neometabolism for the synthesis of new-to-nature molecules, such as organohalides.
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Affiliation(s)
- Manuel Nieto-Domínguez
- The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800, Kongens Lyngby, Denmark
| | - Pablo I Nikel
- The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800, Kongens Lyngby, Denmark
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17
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Chowdhury R, Dubey AK, Ghosh SK. Ag(I)-Fesulphos-Catalyzed Enantioselective Synthesis of 3-Silylproline Derivatives. J Org Chem 2019; 84:2404-2414. [DOI: 10.1021/acs.joc.8b02412] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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18
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Li Z, Teng D, Mao R, Wang X, Hao Y, Wang X, Wang J. Improved Antibacterial Activity of the Marine Peptide N6 against Intracellular Salmonella Typhimurium by Conjugating with the Cell-Penetrating Peptide Tat 11 via a Cleavable Linker. J Med Chem 2018; 61:7991-8000. [PMID: 30095906 DOI: 10.1021/acs.jmedchem.8b01079] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
The poor penetration ability of antimicrobial agents limits their use in the treatment of intracellular bacteria. In this study, the conjugate CNC (6) was generated by connecting the cell-penetrating peptide Tat11 (1) and marine peptide N6 (2) via a cathepsin-cleavable linker, and the C-terminal aminated N6 (7) and CNC (8) were first designed and synthesized to eliminate intracellular Salmonellae Typhimurium. The cellular uptake of 6 and stability of 7 were higher than those of 2, and conjugates 6, 8, and 7 had almost no hemolysis and cytotoxicity. The antibacterial activities of 6, 8, and 7 against S. Typhimurium in RAW264.7 cells were increased by 67.2-76.2%, 98.6-98.9%, and 96.3-97.6%, respectively. After treatment with 1-2 μmol/kg of 6, 8, or 7, the survival of the S. Typhimurium-infected mice was 66.7-100%, higher than that of 2 (33.4-66.7%). This result suggested that 6, 8, and 7 may be excellent candidates for novel antimicrobial agents to treat intracellular pathogens.
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Affiliation(s)
- Zhanzhan Li
- Key Laboratory of Feed Biotechnology, Ministry of Agriculture , Beijing 100081 , People's Republic of China.,Gene Engineering Laboratory , Feed Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , People's Republic of China
| | - Da Teng
- Key Laboratory of Feed Biotechnology, Ministry of Agriculture , Beijing 100081 , People's Republic of China.,Gene Engineering Laboratory , Feed Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , People's Republic of China
| | - Ruoyu Mao
- Key Laboratory of Feed Biotechnology, Ministry of Agriculture , Beijing 100081 , People's Republic of China.,Gene Engineering Laboratory , Feed Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , People's Republic of China
| | - Xiao Wang
- Key Laboratory of Feed Biotechnology, Ministry of Agriculture , Beijing 100081 , People's Republic of China.,Gene Engineering Laboratory , Feed Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , People's Republic of China
| | - Ya Hao
- Key Laboratory of Feed Biotechnology, Ministry of Agriculture , Beijing 100081 , People's Republic of China.,Gene Engineering Laboratory , Feed Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , People's Republic of China
| | - Xiumin Wang
- Key Laboratory of Feed Biotechnology, Ministry of Agriculture , Beijing 100081 , People's Republic of China.,Gene Engineering Laboratory , Feed Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , People's Republic of China
| | - Jianhua Wang
- Key Laboratory of Feed Biotechnology, Ministry of Agriculture , Beijing 100081 , People's Republic of China.,Gene Engineering Laboratory , Feed Research Institute, Chinese Academy of Agricultural Sciences , Beijing 100081 , People's Republic of China
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19
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Pescina S, Ostacolo C, Gomez-Monterrey IM, Sala M, Bertamino A, Sonvico F, Padula C, Santi P, Bianchera A, Nicoli S. Cell penetrating peptides in ocular drug delivery: State of the art. J Control Release 2018; 284:84-102. [PMID: 29913221 DOI: 10.1016/j.jconrel.2018.06.023] [Citation(s) in RCA: 74] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2018] [Revised: 06/12/2018] [Accepted: 06/14/2018] [Indexed: 12/22/2022]
Abstract
Despite the increasing number of effective therapeutics for eye diseases, their treatment is still challenging due to the presence of effective barriers protecting eye tissues. Cell Penetrating Peptides (CPPs), synthetic and natural short amino acid sequences able to cross cellular membrane thanks to a transduction domain, have been proposed as possible enhancing strategies for ophthalmic delivery. In this review, a general description of CPPs classes, design approaches and proposed cellular uptake mechanisms will be provided to the reader as an introduction to ocular CPPs application, together with an overview of the main problems related to ocular administration. The results obtained with CPPs for the treatment of anterior and posterior segment eye diseases will be then introduced, with a focus on non-invasive or minimally invasive administration, shifting from CPPs capability to obtain intracellular delivery to their ability to cross biological barriers. The problems related to in vitro, ex vivo and in vivo models used to investigate CPPs mediated ocular delivery will be also addressed together with potential ocular toxicity issues.
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Affiliation(s)
- S Pescina
- Food and Drug Department, University of Parma, Parco Area delle Scienze, 27/A, 43124 Parma, Italy
| | - C Ostacolo
- Department of Pharmacy, University of Naples Federico II, Via D. Montesano 49, 80131 Napoli, Italy
| | - I M Gomez-Monterrey
- Department of Pharmacy, University of Naples Federico II, Via D. Montesano 49, 80131 Napoli, Italy
| | - M Sala
- Department of Pharmacy, University of Salerno, Via G. Paolo II 132, 84084 Fisciano, SA, Italy
| | - A Bertamino
- Department of Pharmacy, University of Salerno, Via G. Paolo II 132, 84084 Fisciano, SA, Italy
| | - F Sonvico
- Food and Drug Department, University of Parma, Parco Area delle Scienze, 27/A, 43124 Parma, Italy
| | - C Padula
- Food and Drug Department, University of Parma, Parco Area delle Scienze, 27/A, 43124 Parma, Italy
| | - P Santi
- Food and Drug Department, University of Parma, Parco Area delle Scienze, 27/A, 43124 Parma, Italy
| | - A Bianchera
- BiopharmanetTEC, University of Parma, Parco Area delle Scienze, 27/A, 43124 Parma, Italy
| | - S Nicoli
- Food and Drug Department, University of Parma, Parco Area delle Scienze, 27/A, 43124 Parma, Italy.
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20
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Fuertes A, Juanes M, Granja JR, Montenegro J. Supramolecular functional assemblies: dynamic membrane transporters and peptide nanotubular composites. Chem Commun (Camb) 2018. [PMID: 28636028 DOI: 10.1039/c7cc02997g] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
The fabrication of functional molecular devices constitutes one of the most important current challenges for chemical sciences. The complex processes accomplished by living systems continuously demand the assistance of non-covalent interactions between molecular building blocks. Additionally, these building blocks (proteins, membranes, nucleotides) are also constituted by self-assembled structures. Therefore, supramolecular chemistry is the discipline required to understand the properties of the minimal self-assembled building blocks of living systems and to develop new functional smart materials. In the first part of this feature article, we highlight selected examples of the preparation of supramolecular membrane transporters with special emphasis on the application of dynamic covalent bonds. In the second section of the paper we review recent breakthroughs in the preparation of peptide nanotube hybrids with functional applications. The development of these devices constitutes an exciting process from where we can learn how to understand and manipulate supramolecular functional assemblies.
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Affiliation(s)
- Alberto Fuertes
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain.
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21
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Kubyshkin V, Budisa N. Exploring hydrophobicity limits of polyproline helix with oligomeric octahydroindole-2-carboxylic acid. J Pept Sci 2018; 24:e3076. [PMID: 29582506 DOI: 10.1002/psc.3076] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2018] [Revised: 02/24/2018] [Accepted: 02/26/2018] [Indexed: 12/12/2022]
Abstract
The polyproline-II helix is the most extended naturally occurring helical structure and is widely present in polar, exposed stretches and "unstructured" denatured regions of polypeptides. Can it be hydrophobic? In this study, we address this question using oligomeric peptides formed by a hydrophobic proline analogue, (2S,3aS,7aS)-octahydroindole-2-carboxylic acid (Oic). Previously, we found the molecular principles underlying the structural stability of the polyproline-II conformation in these oligomers, whereas the hydrophobicity of the peptide constructs remains to be examined. Therefore, we investigated the octan-1-ol/water partitioning and inclusion in detergent micelles of the oligo-Oic peptides. The results showed that the hydrophobicity is remarkably enhanced in longer oligomeric sequences, and the oligo-Oic peptides with 3 to 4 residues and higher are specific towards hydrophobic environments. This contrasts significantly to the parent oligoproline peptides, which were moderately hydrophilic. With these findings, we have demonstrated that the polyproline-II structure is compatible with nonpolar media, whereas additional manipulations of the terminal functionalities feature solubility in extremely nonpolar solvents such as hexane.
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Affiliation(s)
- Vladimir Kubyshkin
- Institute of Chemistry, Technical University of Berlin, Müller-Breslau-Str. 10, Berlin, 10623, Germany
| | - Nediljko Budisa
- Institute of Chemistry, Technical University of Berlin, Müller-Breslau-Str. 10, Berlin, 10623, Germany
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22
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Cell-Penetrating Peptides: Design Strategies beyond Primary Structure and Amphipathicity. Molecules 2017; 22:molecules22111929. [PMID: 29117144 PMCID: PMC6150340 DOI: 10.3390/molecules22111929] [Citation(s) in RCA: 194] [Impact Index Per Article: 27.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2017] [Revised: 10/31/2017] [Accepted: 11/04/2017] [Indexed: 12/21/2022] Open
Abstract
Efficient intracellular drug delivery and target specificity are often hampered by the presence of biological barriers. Thus, compounds that efficiently cross cell membranes are the key to improving the therapeutic value and on-target specificity of non-permeable drugs. The discovery of cell-penetrating peptides (CPPs) and the early design approaches through mimicking the natural penetration domains used by viruses have led to greater efficiency of intracellular delivery. Following these nature-inspired examples, a number of rationally designed CPPs has been developed. In this review, a variety of CPP designs will be described, including linear and flexible, positively charged and often amphipathic CPPs, and more rigid versions comprising cyclic, stapled, or dimeric and/or multivalent, self-assembled peptides or peptido-mimetics. The application of distinct design strategies to known physico-chemical properties of CPPs offers the opportunity to improve their penetration efficiency and/or internalization kinetics. This led to increased design complexity of new CPPs that does not always result in greater CPP activity. Therefore, the transition of CPPs to a clinical setting remains a challenge also due to the concomitant involvement of various internalization routes and heterogeneity of cells used in the in vitro studies.
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23
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Ramesh R, Reddy DS. Quest for Novel Chemical Entities through Incorporation of Silicon in Drug Scaffolds. J Med Chem 2017; 61:3779-3798. [DOI: 10.1021/acs.jmedchem.7b00718] [Citation(s) in RCA: 203] [Impact Index Per Article: 29.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Remya Ramesh
- CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, 411008, India
- Academy of Scientific and Innovative Research (AcSIR), New Delhi, 110 025, India
| | - D. Srinivasa Reddy
- CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, 411008, India
- Academy of Scientific and Innovative Research (AcSIR), New Delhi, 110 025, India
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24
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Sánchez-Navarro M, Teixidó M, Giralt E. Jumping Hurdles: Peptides Able To Overcome Biological Barriers. Acc Chem Res 2017; 50:1847-1854. [PMID: 28715199 DOI: 10.1021/acs.accounts.7b00204] [Citation(s) in RCA: 54] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The cell membrane, the gastrointestinal tract, and the blood-brain barrier (BBB) are good examples of biological barriers that define and protect cells and organs. They impose different levels of restriction, but they also share common features. For instance, they all display a high lipophilic character. For this reason, hydrophilic compounds, like peptides, proteins, or nucleic acids have long been considered as unable to bypass them. However, the discovery of cell-penetrating peptides (CPPs) opened a vast field of research. Nowadays, CPPs, homing peptides, and blood-brain barrier peptide shuttles (BBB-shuttles) are good examples of peptides able to target and to cross various biological barriers. CPPs are a group of peptides able to interact with the plasma membrane and enter the cell. They display some common characteristics like positively charged residues, mainly arginines, and amphipathicity. In this field, our group has been focused on the development of proline rich CPPs and in the analysis of the importance of secondary amphipathicity in the internalization process. Proline has a privileged structure being the only amino acid with a secondary amine and a cyclic side chain. These features constrain its structure and hamper the formation of H-bonds. Taking advantage of this privileged structure, three different families of proline-rich peptides have been developed, namely, a proline-rich dendrimer, the sweet arrow peptide (SAP), and a group of foldamers based on γ-peptides. The structure and the mechanism of internalization of all of them has been evaluated and analyzed. BBB-shuttles are peptides able to cross the BBB and to carry with them compounds that cannot reach the brain parenchyma unaided. These peptides take advantage of the natural transport mechanisms present at the BBB, which are divided in active and passive transport mechanisms. On the one hand, we have developed BBB-shuttles that cross the BBB by a passive transport mechanism, like diketoperazines (DKPs), (N-MePhe)n, or (PhPro)n. On the other hand, we have investigated BBB-shuttles that utilize active transport mechanisms such as SGV, THRre, or MiniAp-4. For the development of both groups, we have explored several approaches, such as the use of peptide libraries, both chemical and phage display, or hit-to-lead optimization processes. In this Account, we describe, in chronologic order, our contribution to the development of peptides able to overcome various biological barriers and our efforts to understand the mechanisms that they display. In addition, the potential use of both CPPs and BBB-shuttles to improve the transport of promising therapeutic compounds is described.
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Affiliation(s)
- Macarena Sánchez-Navarro
- Institute
for Research in Biomedicine, Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Spain
| | - Meritxell Teixidó
- Institute
for Research in Biomedicine, Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Spain
| | - Ernest Giralt
- Institute
for Research in Biomedicine, Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Spain
- Department
of Organic Chemistry, University of Barcelona, 08028 Barcelona, Spain
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25
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Fang H, Hou W, Liu G, Huang Z. Ruthenium-Catalyzed Site-Selective Intramolecular Silylation of Primary C-H Bonds for Synthesis of Sila-Heterocycles. J Am Chem Soc 2017; 139:11601-11609. [PMID: 28745875 DOI: 10.1021/jacs.7b06798] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Incorporating the silicon element into bioactive organic molecules has received increasing attention in medicinal chemistry. Moreover, organosilanes are valuable synthetic intermediates for fine chemicals and materials. Transition metal-catalyzed C-H silylation has become an important strategy for C-Si bond formations. However, despite the great advances in aromatic C(sp2)-H bond silylations, catalytic methods for aliphatic C(sp3)-H bond silylations are relatively rare. Here we report a pincer ruthenium catalyst for intramolecular silylations of various primary C(sp3)-H bonds adjacent to heteroatoms (O, N, Si, Ge), including the first intramolecular silylations of C-H bonds α to O, N, and Ge. This method provides a general, synthetically efficient approach to novel classes of Si-containing five-membered [1,3]-sila-heterocycles, including oxasilolanes, azasilolanes, disila-heterocycles, and germasilolane. The trend in the reactivity of five classes of C(sp3)-H bonds toward the Ru-catalyzed silylation is elucidated. Mechanistic studies indicate that the rate-determining step is the C-H bond cleavage involving a ruthenium silyl complex as the key intermediate, while a η2-silene ruthenium hydride species is determined to be an off-cycle intermediate.
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Affiliation(s)
- Huaquan Fang
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences , 345 Lingling Road, Shanghai 200032, China
| | - Wenjun Hou
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences , 345 Lingling Road, Shanghai 200032, China
| | - Guixia Liu
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences , 345 Lingling Road, Shanghai 200032, China
| | - Zheng Huang
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences , 345 Lingling Road, Shanghai 200032, China
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26
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Afonin S, Kubyshkin V, Mykhailiuk PK, Komarov IV, Ulrich AS. Conformational Plasticity of the Cell-Penetrating Peptide SAP As Revealed by Solid-State 19F-NMR and Circular Dichroism Spectroscopies. J Phys Chem B 2017; 121:6479-6491. [PMID: 28608690 DOI: 10.1021/acs.jpcb.7b02852] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The cell-penetrating peptide SAP, which was designed as an amphipathic poly-l-proline helix II (PPII), was suggested to self-assemble into regular fibrils that are relevant for its internalization. Herein we have analyzed the structure of SAP in the membrane-bound state by solid-state 19F-NMR, which revealed other structural states, in addition to the expected surface-aligned PPII. Trifluoromethyl-bicyclopentyl-glycine (CF3-Bpg) and two rigid isomers of trifluoromethyl-4,5-methanoprolines (CF3-MePro) were used as labels for 19F-NMR analysis. The equilibria between different conformations of SAP were studied and were found to be shifted by the substituents at Pro-11. Synchrotron-CD results suggested that substituting Pro-11 by CF3-MePro governed the coil-to-PPII equilibrium in solution and in the presence of a lipid bilayer. Using CD and 19F-NMR, we examined the slow kinetics of the association of SAP with membranes and the dependence of the SAP conformational dynamics on the lipid composition. The peptide did not bind to lipids in the solid ordered phase and aggregated only in the liquid ordered "raft"-like bilayers. Self-association could not be detected in solution or in the presence of liquid disordered membranes. Surface-bound amphipathic SAP in a nonaggregated state was structured as a mixture of nonideal extended conformations reflecting the equilibrium already present in solution, i.e., before binding to the membrane.
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Affiliation(s)
- Sergii Afonin
- Institute of Biological Interfaces (IBG-2), Karlsruhe Institute of Technology , P.O.B. 3640, 76021 Karlsruhe, Germany
| | - Vladimir Kubyshkin
- Institute of Organic Chemistry, Karlsruhe Institute of Technology , Fritz-Haber-Weg 6, 76131 Karlsruhe, Germany
| | - Pavel K Mykhailiuk
- Institute of Organic Chemistry, Karlsruhe Institute of Technology , Fritz-Haber-Weg 6, 76131 Karlsruhe, Germany.,Enamine Ltd. , Vul. Chervonotkatska 78, 02660 Kyiv, Ukraine
| | - Igor V Komarov
- Institute of High Technologies, Taras Shevchenko National University of Kyiv , Prosp. Glushkova 4-g, 02033 Kyiv, Ukraine
| | - Anne S Ulrich
- Institute of Biological Interfaces (IBG-2), Karlsruhe Institute of Technology , P.O.B. 3640, 76021 Karlsruhe, Germany.,Institute of Organic Chemistry, Karlsruhe Institute of Technology , Fritz-Haber-Weg 6, 76131 Karlsruhe, Germany
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27
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Fanelli R, Berthomieu D, Didierjean C, Doudouh A, Lebrun A, Martinez J, Cavelier F. Hydrophobic α,α-Disubstituted Disilylated TESDpg Induces Incipient 310-Helix in Short Tripeptide Sequence. Org Lett 2017; 19:2937-2940. [DOI: 10.1021/acs.orglett.7b01172] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Roberto Fanelli
- Institut
des Biomolécules Max Mousseron, IBMM, UMR-5247, CNRS, Université Montpellier, ENSCM, Place Eugène Bataillon, Montpellier 34095 Cedex 5, France
| | - Dorothée Berthomieu
- Laboratoire
des Matériaux Avancés pour la Catalyse et la Santé,
Institut Charles Gerhardt, UMR-5253, CNRS, Université Montpellier, ENSCM, 8, rue de l’Ecole Normale, Montpellier 34296 Cedex 5, France
| | - Claude Didierjean
- CRM2,
UMR-7036, CNRS, Université de Lorraine, Boulevard des Aiguillettes, 54506 Vandoeuvre-lès-Nancy, France
| | - Abdelatif Doudouh
- CRM2,
UMR-7036, CNRS, Université de Lorraine, Boulevard des Aiguillettes, 54506 Vandoeuvre-lès-Nancy, France
| | - Aurélien Lebrun
- Institut
des Biomolécules Max Mousseron, IBMM, UMR-5247, CNRS, Université Montpellier, ENSCM, Place Eugène Bataillon, Montpellier 34095 Cedex 5, France
| | - Jean Martinez
- Institut
des Biomolécules Max Mousseron, IBMM, UMR-5247, CNRS, Université Montpellier, ENSCM, Place Eugène Bataillon, Montpellier 34095 Cedex 5, France
| | - Florine Cavelier
- Institut
des Biomolécules Max Mousseron, IBMM, UMR-5247, CNRS, Université Montpellier, ENSCM, Place Eugène Bataillon, Montpellier 34095 Cedex 5, France
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28
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Nakagawa Y, Chanthamath S, Fujisawa I, Shibatomi K, Iwasa S. Ru(ii)-Pheox-catalyzed Si–H insertion reaction: construction of enantioenriched carbon and silicon centers. Chem Commun (Camb) 2017; 53:3753-3756. [PMID: 28304026 DOI: 10.1039/c7cc01070b] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
We established a highly enantioselective Si–H insertion reaction to construct chiral centers at the carbon and silicon atoms, using a Ru(ii)–Pheox catalyst.
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Affiliation(s)
- Yoko Nakagawa
- Department of Environmental and Life Sciences
- Toyohashi University of Technology
- Toyohashi
- Japan
| | - Soda Chanthamath
- Department of Environmental and Life Sciences
- Toyohashi University of Technology
- Toyohashi
- Japan
| | - Ikuhide Fujisawa
- Department of Environmental and Life Sciences
- Toyohashi University of Technology
- Toyohashi
- Japan
| | - Kazutaka Shibatomi
- Department of Environmental and Life Sciences
- Toyohashi University of Technology
- Toyohashi
- Japan
| | - Seiji Iwasa
- Department of Environmental and Life Sciences
- Toyohashi University of Technology
- Toyohashi
- Japan
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29
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Kubyshkin V, Budisa N. Construction of a polyproline structure with hydrophobic exterior using octahydroindole-2-carboxylic acid. Org Biomol Chem 2017; 15:619-627. [DOI: 10.1039/c6ob02306a] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Oligomeric octahydroindole-2-carboxilic acid (Oic) forms a stable polyproline-II type helix.
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Affiliation(s)
- Vladimir Kubyshkin
- Biocatalysis group
- Institute of Chemistry
- Technical University of Berlin
- Berlin
- Germany
| | - Nediljko Budisa
- Biocatalysis group
- Institute of Chemistry
- Technical University of Berlin
- Berlin
- Germany
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30
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Rémond E, Martin C, Martinez J, Cavelier F. Silicon-Containing Amino Acids: Synthetic Aspects, Conformational Studies, and Applications to Bioactive Peptides. Chem Rev 2016; 116:11654-11684. [DOI: 10.1021/acs.chemrev.6b00122] [Citation(s) in RCA: 173] [Impact Index Per Article: 21.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Emmanuelle Rémond
- Institut
des Biomolécules
Max Mousseron, Unité Mixte de Recherche 5247 de Centre National
de la Recherche Scientifique, École Nationale Supérieure de Chimie de Montpellier, Université Montpellier, Place Eugène
Bataillon, 34095 Montpellier Cedex 5, France
| | - Charlotte Martin
- Institut
des Biomolécules
Max Mousseron, Unité Mixte de Recherche 5247 de Centre National
de la Recherche Scientifique, École Nationale Supérieure de Chimie de Montpellier, Université Montpellier, Place Eugène
Bataillon, 34095 Montpellier Cedex 5, France
| | - Jean Martinez
- Institut
des Biomolécules
Max Mousseron, Unité Mixte de Recherche 5247 de Centre National
de la Recherche Scientifique, École Nationale Supérieure de Chimie de Montpellier, Université Montpellier, Place Eugène
Bataillon, 34095 Montpellier Cedex 5, France
| | - Florine Cavelier
- Institut
des Biomolécules
Max Mousseron, Unité Mixte de Recherche 5247 de Centre National
de la Recherche Scientifique, École Nationale Supérieure de Chimie de Montpellier, Université Montpellier, Place Eugène
Bataillon, 34095 Montpellier Cedex 5, France
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Madsen JLH, Hjørringgaard CU, Vad BS, Otzen D, Skrydstrup T. Incorporation of β-Silicon-β3-Amino Acids in the Antimicrobial Peptide Alamethicin Provides a 20-Fold Increase in Membrane Permeabilization. Chemistry 2016; 22:8358-67. [DOI: 10.1002/chem.201600445] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2016] [Indexed: 12/26/2022]
Affiliation(s)
- Julie L. H. Madsen
- Department of Chemistry and; Interdisciplinary Nanoscience Center; Center for Insoluble Protein Structures; Aarhus University; Gustav Wieds Vej 14 8000 Aarhus C Denmark
| | - Claudia U. Hjørringgaard
- Department of Chemistry and; Interdisciplinary Nanoscience Center; Center for Insoluble Protein Structures; Aarhus University; Gustav Wieds Vej 14 8000 Aarhus C Denmark
| | - Brian S. Vad
- Department of Molecular Biology and Genetics and; Interdisciplinary Nanoscience Center; Center for Insoluble Protein Structures; Aarhus University; Gustav Wieds Vej 14 8000 Aarhus C Denmark
| | - Daniel Otzen
- Department of Molecular Biology and Genetics and; Interdisciplinary Nanoscience Center; Center for Insoluble Protein Structures; Aarhus University; Gustav Wieds Vej 14 8000 Aarhus C Denmark
| | - Troels Skrydstrup
- Department of Chemistry and; Interdisciplinary Nanoscience Center; Center for Insoluble Protein Structures; Aarhus University; Gustav Wieds Vej 14 8000 Aarhus C Denmark
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Chung JYL, Shevlin M, Klapars A, Journet M. Asymmetric Synthesis of N-Boc-(R)-Silaproline via Rh-Catalyzed Intramolecular Hydrosilylation of Dehydroalanine and Continuous Flow N-Alkylation. Org Lett 2016; 18:1812-5. [PMID: 27015542 DOI: 10.1021/acs.orglett.6b00548] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
An asymmetric synthesis of a silicon-containing proline surrogate, N-Boc-(R)-silaproline (1), is described. Starting from N-Boc-dehydroalanine ester, deprotonation, followed by N-alkylation with chloromethyldimethylsilane under flow conditions, afforded the N-alkylated product 8 in 91% yield. An unprecedented enantioselective (NBD)2RhBF4/Josiphos 404-1 catalyzed 5-endo-trig hydrosilylation afforded the silaproline ester in 85-90% yield and >95% ee. Subsequent saponification and salt formation upgraded 1 to >99% ee.
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Affiliation(s)
- John Y L Chung
- Department of Process Chemistry, Merck Research Laboratories , P.O. Box 2000, Rahway, New Jersey 07065, United States
| | - Michael Shevlin
- Department of Process Chemistry, Merck Research Laboratories , P.O. Box 2000, Rahway, New Jersey 07065, United States
| | - Artis Klapars
- Department of Process Chemistry, Merck Research Laboratories , P.O. Box 2000, Rahway, New Jersey 07065, United States
| | - Michel Journet
- Department of Process Chemistry, Merck Research Laboratories , P.O. Box 2000, Rahway, New Jersey 07065, United States
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33
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Fanelli R, Salah KBH, Inguimbert N, Didierjean C, Martinez J, Cavelier F. Access to α,α-Disubstituted Disilylated Amino Acids and Their Use in Solid-Phase Peptide Synthesis. Org Lett 2015; 17:4498-501. [DOI: 10.1021/acs.orglett.5b02175] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- Roberto Fanelli
- Institut
des Biomolécules Max Mousseron, IBMM, UMR-5247, CNRS, Université Montpellier, ENSCM, Place Eugène Bataillon, Montpellier34095 Cedex 5, France
| | - Khoubaib Ben Haj Salah
- Université de Perpignan Via Domitia, CRIOBE USR
3278, 58 avenue P. Alduy Bât T, 66860 Perpignan, France
| | - Nicolas Inguimbert
- Université de Perpignan Via Domitia, CRIOBE USR
3278, 58 avenue P. Alduy Bât T, 66860 Perpignan, France
| | - Claude Didierjean
- CRM2
(UMR UL-CNRS 7036) Faculté des Sciences et Technologies, Université de Lorraine, 70239 Boulevard des Aiguillettes, 54506 Vandoeuvre-lès-Nancy, France
| | - Jean Martinez
- Institut
des Biomolécules Max Mousseron, IBMM, UMR-5247, CNRS, Université Montpellier, ENSCM, Place Eugène Bataillon, Montpellier34095 Cedex 5, France
| | - Florine Cavelier
- Institut
des Biomolécules Max Mousseron, IBMM, UMR-5247, CNRS, Université Montpellier, ENSCM, Place Eugène Bataillon, Montpellier34095 Cedex 5, France
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34
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Giralt E. Josef Rudinger Memorial Lecture: Use of peptides to modulate protein-protein interactions. J Pept Sci 2015; 21:447-53. [PMID: 25847600 DOI: 10.1002/psc.2768] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2014] [Revised: 02/04/2015] [Accepted: 02/09/2015] [Indexed: 11/06/2022]
Abstract
Peptides are destined to play a major role as therapeutic agents. My laboratory is contributing to speeding up this process. On the one hand, we devote efforts to studying the molecular details and dynamics of the events that occur during molecular recognition at protein surfaces. We succeeded to design and synthesize peptides able to modulate these recognition events either permanently or in response to light. On the other hand, we are discovering and designing peptides able to cross biological barriers. Our aim is to use these peptides as shuttles for targeting therapeutic agents to organs, tissues, or cells, with a special emphasis on drug delivery to the brain.
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Affiliation(s)
- Ernest Giralt
- Institute for Research in Biomedicine (IRB Barcelona), Baldiri Reixac 10, 08028, Barcelona, Spain.,Department of Organic Chemistry, University of Barcelona, Marti Franqués 1, 08028, Barcelona, Spain
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Reid CM, Fanning KN, Fowler LS, Sutherland A. Synthesis and reactivity of 4-oxo-5-trimethylsilanyl derived α-amino acids. Tetrahedron 2015. [DOI: 10.1016/j.tet.2014.11.059] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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36
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Rémond E, Martin C, Martinez J, Cavelier F. Silaproline, a Silicon-Containing Proline Surrogate. TOPICS IN HETEROCYCLIC CHEMISTRY 2015. [DOI: 10.1007/7081_2015_177] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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37
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Martin C, Legrand B, Lebrun A, Berthomieu D, Martinez J, Cavelier F. Silaproline Helical Mimetics Selectively Form an All-transPPII Helix. Chemistry 2014; 20:14240-4. [DOI: 10.1002/chem.201404820] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2014] [Indexed: 11/06/2022]
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38
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Bang EK, Ward S, Gasparini G, Sakai N, Matile S. Cell-penetrating poly(disulfide)s: focus on substrate-initiated co-polymerization. Polym Chem 2014. [DOI: 10.1039/c3py01570j] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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39
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(L)-(Trimethylsilyl)alanine synthesis exploiting hydroxypinanone-induced diastereoselective alkylation. Amino Acids 2013; 45:301-7. [DOI: 10.1007/s00726-013-1492-2] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2013] [Accepted: 04/02/2013] [Indexed: 10/26/2022]
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40
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Martin C, Lebrun A, Martinez J, Cavelier F. Synthesis of homopolypeptides with PPII structure. ACTA ACUST UNITED AC 2013. [DOI: 10.1002/pola.26705] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Charlotte Martin
- IBMM, UMR-CNRS-5247; Universités Montpellier I and II, Place Eugène Bataillon; 34095 Montpellier France
| | - Aurélien Lebrun
- LMP, IBMM; Université Montpellier II, Place Eugène Bataillon; 34095 Montpellier France
| | - Jean Martinez
- IBMM, UMR-CNRS-5247; Universités Montpellier I and II, Place Eugène Bataillon; 34095 Montpellier France
| | - Florine Cavelier
- IBMM, UMR-CNRS-5247; Universités Montpellier I and II, Place Eugène Bataillon; 34095 Montpellier France
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41
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Yamazaki CM, Nakase I, Endo H, Kishimoto S, Mashiyama Y, Masuda R, Futaki S, Koide T. Collagen-like Cell-Penetrating Peptides. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201301266] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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42
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Yamazaki CM, Nakase I, Endo H, Kishimoto S, Mashiyama Y, Masuda R, Futaki S, Koide T. Collagen-like Cell-Penetrating Peptides. Angew Chem Int Ed Engl 2013; 52:5497-500. [DOI: 10.1002/anie.201301266] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2013] [Indexed: 11/07/2022]
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43
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Kolesinska B, Podwysocka DJ, Rueping MA, Seebach D, Kamena F, Walde P, Sauer M, Windschiegl B, Meyer-Ács M, Vor der Brüggen M, Giehring S. Permeation through Phospholipid Bilayers, Skin-Cell Penetration, Plasma Stability, and CD Spectra ofα- andβ-Oligoproline Derivatives. Chem Biodivers 2013; 10:1-38. [DOI: 10.1002/cbdv.201200393] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2012] [Indexed: 11/06/2022]
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Affiliation(s)
- Annaliese K. Franz
- Department of Chemistry, University of California—Davis, One Shields Avenue, Davis,
California, United States
| | - Sean O. Wilson
- Department of Chemistry, University of California—Davis, One Shields Avenue, Davis,
California, United States
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45
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Mitochondrial targeting of a cationic amphiphilic polyproline helix. Bioorg Med Chem Lett 2012; 22:561-3. [DOI: 10.1016/j.bmcl.2011.10.077] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2011] [Revised: 10/21/2011] [Accepted: 10/24/2011] [Indexed: 11/19/2022]
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46
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Lazareva NF. N-(silylmethyl)amines, -amides, and -amino acids: biological activity and prospects in drug synthesis. Russ Chem Bull 2011. [DOI: 10.1007/s11172-011-0097-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
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47
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Martin C, Vanthuyne N, Miramon H, Martinez J, Cavelier F. Resolution of protected silaproline for a gram scale preparation. Amino Acids 2011; 43:649-55. [PMID: 22002795 DOI: 10.1007/s00726-011-1112-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2011] [Accepted: 09/26/2011] [Indexed: 10/17/2022]
Abstract
Silaproline is an analogue of proline, which exhibits similar conformational properties. Moreover, the presence of dimethylsilyl group confers to silaproline a higher lipophilicity as well as an improved resistance to biodegradation. This report describes the comparison of two routes to obtain Fmoc-(L) Sip-OH on the gram scale using chiral HPLC resolution.
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Affiliation(s)
- C Martin
- IBMM, UMR-CNRS-5247, Universités Montpellier I and II, Place Eugène Bataillon, Montpellier 34095, France
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48
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Marín S, Pujals S, Giralt E, Merkoçi A. Electrochemical Investigation of Cellular Uptake of Quantum Dots Decorated with a Proline-Rich Cell Penetrating Peptide. Bioconjug Chem 2011; 22:180-5. [DOI: 10.1021/bc100207w] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Sergio Marín
- Nanobioelectronics & Biosensors Group, CIN2 (ICN-CSIC) Institut Català de Nanotecnologia, Barcelona, Spain
- Department of Chemistry, Universitat Autònoma de Barcelona, Bellaterra, Barcelona, Spain
| | - Sílvia Pujals
- Institute for Research in Biomedicine, Barcelona Scientific Park, Barcelona, Spain
| | - Ernest Giralt
- Institute for Research in Biomedicine, Barcelona Scientific Park, Barcelona, Spain
- Department of Organic Chemistry, University of Barcelona, Barcelona, Spain
| | - Arben Merkoçi
- Nanobioelectronics & Biosensors Group, CIN2 (ICN-CSIC) Institut Català de Nanotecnologia, Barcelona, Spain
- Department of Chemistry, Universitat Autònoma de Barcelona, Bellaterra, Barcelona, Spain
- ICREA, Barcelona, Spain
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Abstract
The classical view on how peptides enter cells has been changed due to the development in the research field of cell-penetrating peptides (CPPs). During the last 15 years, more than 100 peptide sequences have been published to enter cells and also to bring different biological cargoes with them. Here, we present an overview of CPPs, mainly trying to analyze their common properties yielding the prediction of their cell-penetrating properties. Furthermore, examples of recent research, ideas on classification and uptake mechanisms, as well as a summary of the therapeutic potential of CPPs are presented.
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50
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Abbineni G, Modali S, Safiejko-Mroczka B, Petrenko VA, Mao C. Evolutionary selection of new breast cancer cell-targeting peptides and phages with the cell-targeting peptides fully displayed on the major coat and their effects on actin dynamics during cell internalization. Mol Pharm 2010; 7:1629-42. [PMID: 20735141 PMCID: PMC3021627 DOI: 10.1021/mp100052y] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Filamentous phage as a bacteria-specific virus can be conjugated with an anticancer drug and has been proposed to serve as a carrier to deliver drugs to cancer cells for targeted therapy. However, how cell-targeting filamentous phage alone affects cancer cell biology is unclear. Phage libraries provide an inexhaustible reservoir of new ligands against tumor cells and tissues that have potential therapeutic and diagnostic applications in cancer treatment. Some of these identified ligands might stimulate various cell responses. Here we identified new cell internalizing peptides (and the phages with such peptides fused to each of ~3900 copies of their major coat protein) using landscape phage libraries and for the first time investigated the actin dynamics when selected phages are internalized into the SKBR-3 breast cancer cells. Our results show that phages harboring VSSTQDFP and DGSIPWST peptides could selectively internalize into the SKBR-3 breast cancer cells with high affinity, and also show rapid involvement of membrane ruffling and rearrangements of actin cytoskeleton during the phage entry. The actin dynamics was studied by using live cell and fluorescence imaging. The cell-targeting phages were found to enter breast cancer cells through energy dependent mechanism and phage entry interferes with actin dynamics, resulting in reorganization of actin filaments and increased membrane rufflings in SKBR-3 cells. These results suggest that, when phage enters epithelial cells, it triggers transient changes in the host cell actin cytoskeleton. This study also shows that using multivalent phage libraries considerably increases the repertoire of available cell-internalizing ligands with potential applications in targeted drug delivery, imaging, molecular monitoring and profiling of breast cancer cells.
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Affiliation(s)
- Gopal Abbineni
- Department of Chemistry and Biochemistry, The University of Oklahoma, Norman, Oklahoma 73019, USA
| | - Sita Modali
- Department of Chemistry and Biochemistry, The University of Oklahoma, Norman, Oklahoma 73019, USA
| | | | - Valery A. Petrenko
- Department of Pathobiology, College of Veterinary Medicine, Auburn University, Auburn, Alabama 36849, USA
| | - Chuanbin Mao
- Department of Chemistry and Biochemistry, The University of Oklahoma, Norman, Oklahoma 73019, USA
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