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For: Hahn J, Strauss HM, Schmieder P. Heteronuclear NMR Investigation on the Structure and Dynamics of the Chromophore Binding Pocket of the Cyanobacterial Phytochrome Cph1. J Am Chem Soc 2008;130:11170-8. [DOI: 10.1021/ja8031086] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Number Cited by Other Article(s)
1
Bell D, Lindemann F, Gerland L, Aucharova H, Klein A, Friedrich D, Hiller M, Grohe K, Meier T, van Rossum B, Diehl A, Hughes J, Mueller LJ, Linser R, Miller AF, Oschkinat H. Sedimentation of large, soluble proteins up to 140 kDa for 1H-detected MAS NMR and 13C DNP NMR - practical aspects. JOURNAL OF BIOMOLECULAR NMR 2024:10.1007/s10858-024-00444-9. [PMID: 38904893 DOI: 10.1007/s10858-024-00444-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Accepted: 05/08/2024] [Indexed: 06/22/2024]
2
Yang Y, Stensitzki T, Lang C, Hughes J, Mroginski MA, Heyne K. Ultrafast protein response in the Pfr state of Cph1 phytochrome. PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES : OFFICIAL JOURNAL OF THE EUROPEAN PHOTOCHEMISTRY ASSOCIATION AND THE EUROPEAN SOCIETY FOR PHOTOBIOLOGY 2023;22:919-930. [PMID: 36653574 DOI: 10.1007/s43630-023-00362-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2022] [Accepted: 12/27/2022] [Indexed: 01/20/2023]
3
Significant impact of deprotonated status on the photoisomerization dynamics of bacteriophytochrome chromophore. CHINESE CHEM LETT 2022. [DOI: 10.1016/j.cclet.2022.107850] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
4
Otero LH, Foscaldi S, Antelo GT, Rosano GL, Sirigu S, Klinke S, Defelipe LA, Sánchez-Lamas M, Battocchio G, Conforte V, Vojnov AA, Chavas LMG, Goldbaum FA, Mroginski MA, Rinaldi J, Bonomi HR. Structural basis for the Pr-Pfr long-range signaling mechanism of a full-length bacterial phytochrome at the atomic level. SCIENCE ADVANCES 2021;7:eabh1097. [PMID: 34818032 PMCID: PMC8612531 DOI: 10.1126/sciadv.abh1097] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Accepted: 09/22/2021] [Indexed: 06/13/2023]
5
Jähnigen S, Sebastiani D. Carbon Atoms Speaking Out: How the Geometric Sensitivity of 13C Chemical Shifts Leads to Understanding the Colour Tuning of Phycocyanobilin in Cph1 and AnPixJ. Molecules 2020;25:E5505. [PMID: 33255423 PMCID: PMC7727823 DOI: 10.3390/molecules25235505] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2020] [Revised: 11/18/2020] [Accepted: 11/19/2020] [Indexed: 11/29/2022]  Open
6
MAS NMR on a Red/Far-Red Photochromic Cyanobacteriochrome All2699 from Nostoc. Int J Mol Sci 2019;20:ijms20153656. [PMID: 31357417 PMCID: PMC6696110 DOI: 10.3390/ijms20153656] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2019] [Revised: 07/21/2019] [Accepted: 07/24/2019] [Indexed: 11/16/2022]  Open
7
Stensitzki T, Yang Y, Wölke AL, Knapp EW, Hughes J, Mroginski MA, Heyne K. Influence of Heterogeneity on the Ultrafast Photoisomerization Dynamics of Pfr in Cph1 Phytochrome. Photochem Photobiol 2018;93:703-712. [PMID: 28500700 DOI: 10.1111/php.12743] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2016] [Accepted: 01/03/2017] [Indexed: 01/23/2023]
8
Song C, Mroginski MA, Lang C, Kopycki J, Gärtner W, Matysik J, Hughes J. 3D Structures of Plant Phytochrome A as Pr and Pfr From Solid-State NMR: Implications for Molecular Function. FRONTIERS IN PLANT SCIENCE 2018;9:498. [PMID: 29740459 PMCID: PMC5928327 DOI: 10.3389/fpls.2018.00498] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2018] [Accepted: 04/03/2018] [Indexed: 05/25/2023]
9
Lamparter T, Krauß N, Scheerer P. Phytochromes from Agrobacterium fabrum. Photochem Photobiol 2017;93:642-655. [DOI: 10.1111/php.12761] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2016] [Accepted: 02/22/2017] [Indexed: 01/24/2023]
10
Stöppler D, Song C, van Rossum BJ, Geiger MA, Lang C, Mroginski MA, Jagtap AP, Sigurdsson ST, Matysik J, Hughes J, Oschkinat H. Dynamic Nuclear Polarization Provides New Insights into Chromophore Structure in Phytochrome Photoreceptors. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201608119] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
11
Stöppler D, Song C, van Rossum BJ, Geiger MA, Lang C, Mroginski MA, Jagtap AP, Sigurdsson ST, Matysik J, Hughes J, Oschkinat H. Dynamic Nuclear Polarization Provides New Insights into Chromophore Structure in Phytochrome Photoreceptors. Angew Chem Int Ed Engl 2016;55:16017-16020. [DOI: 10.1002/anie.201608119] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2016] [Revised: 09/30/2016] [Indexed: 11/12/2022]
12
Song C, Lang C, Kopycki J, Hughes J, Matysik J. NMR chemical shift pattern changed by ammonium sulfate precipitation in cyanobacterial phytochrome Cph1. Front Mol Biosci 2015;2:42. [PMID: 26284254 PMCID: PMC4516977 DOI: 10.3389/fmolb.2015.00042] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2015] [Accepted: 07/06/2015] [Indexed: 11/25/2022]  Open
13
Velazquez Escobar F, von Stetten D, Günther-Lütkens M, Keidel A, Michael N, Lamparter T, Essen LO, Hughes J, Gärtner W, Yang Y, Heyne K, Mroginski MA, Hildebrandt P. Conformational heterogeneity of the Pfr chromophore in plant and cyanobacterial phytochromes. Front Mol Biosci 2015. [PMID: 26217669 PMCID: PMC4498102 DOI: 10.3389/fmolb.2015.00037] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]  Open
14
Yang Y, Linke M, von Haimberger T, Matute R, González L, Schmieder P, Heyne K. Active and silent chromophore isoforms for phytochrome Pr photoisomerization: An alternative evolutionary strategy to optimize photoreaction quantum yields. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2014;1:014701. [PMID: 26798771 PMCID: PMC4711594 DOI: 10.1063/1.4865233] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2013] [Accepted: 01/11/2014] [Indexed: 05/12/2023]
15
Song C, Psakis G, Kopycki J, Lang C, Matysik J, Hughes J. The D-ring, not the A-ring, rotates in Synechococcus OS-B' phytochrome. J Biol Chem 2013;289:2552-62. [PMID: 24327657 DOI: 10.1074/jbc.m113.520031] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]  Open
16
Zhuang X, Wang J, Lan Z. Tracking of the Molecular Motion in the Primary Event of Photoinduced Reactions of a Phytochromobilin Model. J Phys Chem B 2013;117:15976-86. [DOI: 10.1021/jp408799b] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
17
Song C, Rohmer T, Tiersch M, Zaanen J, Hughes J, Matysik J. Solid-State NMR Spectroscopy to Probe Photoactivation in Canonical Phytochromes. Photochem Photobiol 2013;89:259-73. [DOI: 10.1111/php.12029] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2012] [Accepted: 11/28/2012] [Indexed: 01/17/2023]
18
Song C, Essen LO, Gärtner W, Hughes J, Matysik J. Solid-state NMR spectroscopic study of chromophore-protein interactions in the Pr ground state of plant phytochrome A. MOLECULAR PLANT 2012;5:698-715. [PMID: 22419823 DOI: 10.1093/mp/sss017] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
19
Yang Y, Linke M, von Haimberger T, Hahn J, Matute R, González L, Schmieder P, Heyne K. Real-Time Tracking of Phytochrome’s Orientational Changes During Pr Photoisomerization. J Am Chem Soc 2012;134:1408-11. [DOI: 10.1021/ja209413d] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
20
Röben M, Schmieder P. Assignment of phycocyanobilin in HMPT using triple resonance experiments. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2011;49:543-548. [PMID: 21815209 DOI: 10.1002/mrc.2776] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2011] [Revised: 05/11/2011] [Accepted: 05/12/2011] [Indexed: 05/31/2023]
21
Auldridge ME, Forest KT. Bacterial phytochromes: more than meets the light. Crit Rev Biochem Mol Biol 2011;46:67-88. [PMID: 21250783 DOI: 10.3109/10409238.2010.546389] [Citation(s) in RCA: 171] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
22
Rohmer T, Lang C, Gärtner W, Hughes J, Matysik J. Role of the protein cavity in phytochrome chromoprotein assembly and double-bond isomerization: a comparison with model compounds. Photochem Photobiol 2010;86:856-61. [PMID: 20492561 DOI: 10.1111/j.1751-1097.2010.00740.x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
23
Röben M, Hahn J, Klein E, Lamparter T, Psakis G, Hughes J, Schmieder P. NMR Spectroscopic Investigation of Mobility and Hydrogen Bonding of the Chromophore in the Binding Pocket of Phytochrome Proteins. Chemphyschem 2010;11:1248-57. [DOI: 10.1002/cphc.200900897] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
24
Phytochrome three-dimensional structures and functions. Biochem Soc Trans 2010;38:710-6. [DOI: 10.1042/bst0380710] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
25
van Wilderen LJGW, Clark IP, Towrie M, van Thor JJ. Mid-infrared picosecond pump-dump-probe and pump-repump-probe experiments to resolve a ground-state intermediate in cyanobacterial phytochrome Cph1. J Phys Chem B 2010;113:16354-64. [PMID: 19950906 DOI: 10.1021/jp9038539] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
26
Yang X, Kuk J, Moffat K. Conformational differences between the Pfr and Pr states in Pseudomonas aeruginosa bacteriophytochrome. Proc Natl Acad Sci U S A 2009;106:15639-44. [PMID: 19720999 PMCID: PMC2747172 DOI: 10.1073/pnas.0902178106] [Citation(s) in RCA: 118] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2009] [Indexed: 11/18/2022]  Open
27
Mroginski MA, von Stetten D, Escobar FV, Strauss HM, Kaminski S, Scheerer P, Günther M, Murgida DH, Schmieder P, Bongards C, Gärtner W, Mailliet J, Hughes J, Essen LO, Hildebrandt P. Chromophore structure of cyanobacterial phytochrome Cph1 in the Pr state: reconciling structural and spectroscopic data by QM/MM calculations. Biophys J 2009;96:4153-63. [PMID: 19450486 DOI: 10.1016/j.bpj.2009.02.029] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2008] [Revised: 01/21/2009] [Accepted: 02/05/2009] [Indexed: 10/20/2022]  Open
28
Borucki B, Seibeck S, Heyn MP, Lamparter T. Characterization of the covalent and noncovalent adducts of Agp1 phytochrome assembled with biliverdin and phycocyanobilin by circular dichroism and flash photolysis. Biochemistry 2009;48:6305-17. [PMID: 19496558 DOI: 10.1021/bi900436v] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
29
Borucki B, Lamparter T. A polarity probe for monitoring light-induced structural changes at the entrance of the chromophore pocket in a bacterial phytochrome. J Biol Chem 2009;284:26005-16. [PMID: 19640848 DOI: 10.1074/jbc.m109.049056] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
30
Inomata K, Khawn H, Chen LY, Kinoshita H, Zienicke B, Molina I, Lamparter T. Assembly of Agrobacterium Phytochromes Agp1 and Agp2 with Doubly Locked Bilin Chromophores. Biochemistry 2009;48:2817-27. [DOI: 10.1021/bi802334u] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
31
The phytochrome red/far-red photoreceptor superfamily. Genome Biol 2008;9:230. [PMID: 18771590 PMCID: PMC2575506 DOI: 10.1186/gb-2008-9-8-230] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]  Open
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