1
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Bell D, Lindemann F, Gerland L, Aucharova H, Klein A, Friedrich D, Hiller M, Grohe K, van Rossum B, Diehl A, Hughes J, Mueller LJ, Linser R, Miller AF, Oschkinat H. Sedimentation of large, soluble proteins up to 140 kDa for 1H-detected MAS NMR and 13C DNP NMR - practical aspects. Res Sq 2024:rs.3.rs-3972885. [PMID: 38464080 PMCID: PMC10925473 DOI: 10.21203/rs.3.rs-3972885/v1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/12/2024]
Abstract
Solution NMR is typically applied to biological systems with molecular weights < 40 kDa whereas magic-angle-spinning (MAS) solid-state NMR traditionally targets very large, oligomeric proteins and complexes exceeding 500 kDa in mass, including fibrils and crystalline protein preparations. Here, we propose that the gap between these size regimes can be filled by the approach presented that enables investigation of large, soluble and fully protonated proteins in the range of 40-140 kDa. As a key step, ultracentrifugation produces a highly concentrated, gel-like state, resembling a dense phase in spontaneous liquid-liquid phase separation (LLPS). By means of three examples, a Sulfolobus acidocaldarius bifurcating electron transfer flavoprotein (SulfETF), tryptophan synthases from Salmonella typhimurium (StTS) and the dimeric β-subunits from Pyrococcus furiosus (PfTrpB), we show that such samples yield well-resolved proton-detected 2D and 3D NMR spectra at 100 kHz MAS without heterogeneous broadening, similar to diluted liquids. Herein, we provide practical guidance on centrifugation conditions and tools, sample behavior, and line widths expected. We demonstrate that the observed chemical shifts correspond to those obtained from μM/low mM solutions or crystalline samples, indicating structural integrity. Nitrogen line widths as low as 20-30 Hz are observed. The presented approach is advantageous for proteins or nucleic acids that cannot be deuterated due to the expression system used, or where relevant protons cannot be re-incorporated after expression in deuterated medium, and it circumvents crystallization. Importantly, it allows the use of low-glycerol buffers in dynamic nuclear polarization (DNP) NMR of proteins as demonstrated with the cyanobacterial phytochrome Cph1.
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Affiliation(s)
- Dallas Bell
- Faculty II-Mathematics and Natural Sciences, Technische Universität Berlin
| | | | - Lisa Gerland
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie
| | - Hanna Aucharova
- Department of Chemistry and Chemical Biology, TU Dortmund University
| | - Alexander Klein
- Department of Chemistry and Chemical Biology, TU Dortmund University
| | | | | | | | | | - Anne Diehl
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie
| | - Jon Hughes
- Justus Liebig University, Institute for Plant Physiology
| | | | - Rasmus Linser
- Department of Chemistry and Chemical Biology, TU Dortmund University
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2
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El-Kashef DH, Obidake DD, Schiedlauske K, Deipenbrock A, Scharf S, Wang H, Naumann D, Friedrich D, Miljanovic S, Haj Hassani Sohi T, Janiak C, Pfeffer K, Teusch N. Indole Diketopiperazine Alkaloids from the Marine Sediment-Derived Fungus Aspergillus chevalieri against Pancreatic Ductal Adenocarcinoma. Mar Drugs 2023; 22:5. [PMID: 38276643 PMCID: PMC10820104 DOI: 10.3390/md22010005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 12/14/2023] [Accepted: 12/17/2023] [Indexed: 01/27/2024] Open
Abstract
A new prenylated indole diketopiperazine alkaloid, rubrumline P (1), was isolated along with six more analogues and characterized from the fermentation culture of a marine sediment-derived fungus, Aspergillus chevalieri, collected at a depth of 15 m near the lighthouse in Dahab, Red Sea, Egypt. In the current study, a bioassay-guided fractionation allowed for the identification of an active fraction displaying significant cytotoxic activity against the human pancreatic adenocarcinoma cell line PANC-1 from the EtOAc extract of the investigated fungus compared to the standard paclitaxel. The structures of the isolated compounds from the active fraction were established using 1D/2D NMR spectroscopy and mass spectrometry, together with comparisons with the literature. The absolute configuration of the obtained indole diketopiperazines was established based on single-crystal X-ray diffraction analyses of rubrumline I (2) and comparisons of optical rotations and NMR data, as well as on biogenetic considerations. Genome sequencing indicated the formation of prenyltransferases, which was subsequently confirmed by the isolation of mono-, di-, tri-, and tetraprenylated compounds. Compounds rubrumline P (1) and neoechinulin D (4) confirmed preferential cytotoxic activity against PANC-1 cancer cells with IC50 values of 25.8 and 23.4 µM, respectively. Although the underlying mechanism-of-action remains elusive in this study, cell cycle analysis indicated a slight increase in the sub-G1 peak after treatment with compounds 1 and 4.
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Affiliation(s)
- Dina H. El-Kashef
- Institute of Pharmaceutical Biology and Biotechnology, Heinrich Heine University Düsseldorf, 40225 Düsseldorf, Germany; (D.H.E.-K.)
- Department of Pharmacognosy, Faculty of Pharmacy, Minia University, 61519 Minia, Egypt
| | - Deborah D. Obidake
- Institute of Pharmaceutical Biology and Biotechnology, Heinrich Heine University Düsseldorf, 40225 Düsseldorf, Germany; (D.H.E.-K.)
| | - Katja Schiedlauske
- Institute of Pharmaceutical Biology and Biotechnology, Heinrich Heine University Düsseldorf, 40225 Düsseldorf, Germany; (D.H.E.-K.)
| | - Alina Deipenbrock
- Institute of Pharmaceutical Biology and Biotechnology, Heinrich Heine University Düsseldorf, 40225 Düsseldorf, Germany; (D.H.E.-K.)
| | - Sebastian Scharf
- Institute of Medical Microbiology and Hospital Hygiene, Medical Faculty, Heinrich Heine University, 40225 Düsseldorf, Germany
| | - Hao Wang
- Hainan Key Laboratory for Research and Development of Natural Products from Li Folk Medicine, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China
| | - Daniela Naumann
- Department of Chemistry and Biochemistry, University of Cologne, 50939 Cologne, Germany
| | - Daniel Friedrich
- Department of Chemistry and Biochemistry, University of Cologne, 50939 Cologne, Germany
| | - Simone Miljanovic
- Institute of Pharmaceutical Biology and Biotechnology, Heinrich Heine University Düsseldorf, 40225 Düsseldorf, Germany; (D.H.E.-K.)
| | - Takin Haj Hassani Sohi
- Institute of Inorganic Chemistry and Structural Chemistry, Heinrich Heine University Düsseldorf, 40225 Düsseldorf, Germany
| | - Christoph Janiak
- Institute of Inorganic Chemistry and Structural Chemistry, Heinrich Heine University Düsseldorf, 40225 Düsseldorf, Germany
| | - Klaus Pfeffer
- Institute of Medical Microbiology and Hospital Hygiene, Medical Faculty, Heinrich Heine University, 40225 Düsseldorf, Germany
| | - Nicole Teusch
- Institute of Pharmaceutical Biology and Biotechnology, Heinrich Heine University Düsseldorf, 40225 Düsseldorf, Germany; (D.H.E.-K.)
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3
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Stevenson M, Weiß S, Cha G, Schamel M, Jahn L, Friedrich D, Danzer MA, Cheong JY, Breu J. Osmotically Delaminated Silicate Nanosheet-Coated NCM for Ultra-Stable Li + Storage and Chemical Stability Toward Long-Term Air Exposure. Small 2023; 19:e2302617. [PMID: 37264519 DOI: 10.1002/smll.202302617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Revised: 05/11/2023] [Indexed: 06/03/2023]
Abstract
To ensure the safety and performance of lithium-ion batteries (LIBs), a rational design and optimization of suitable cathode materials are crucial. Lithium nickel cobalt manganese oxides (NCM) represent one of the most popular cathode materials for commercial LIBs. However, they are limited by several critical issues, such as transition metal dissolution, formation of an unstable cathode-electrolyte interphase (CEI) layer, chemical instability upon air exposure, and mechanical instability. In this work, coating fabricated by self-assembly of osmotically delaminated sodium fluorohectorite (Hec) nanosheets onto NCM (Hec-NCM) in a simple and technically benign aqueous wet-coating process is reported first. Complete wrapping of NCM by high aspect ratio (>10 000) nanosheets is enabled through an electrostatic attraction between Hec nanosheets and NCM as well as by the superior mechanical flexibility of Hec nanosheets. The coating significantly suppresses mechanical degradation while forming a multi-functional CEI layer. Consequently, Hec-NCM delivers outstanding capacity retention for 300 cycles. Furthermore, due to the exceptional gas barrier properties of the few-layer Hec-coating, the electrochemical performance of Hec-NCM is maintained even after 6 months of exposure to the ambient atmosphere. These findings suggest a new direction of significantly improving the long-term stability and activity of cathode materials by creating an artificial CEI layer.
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Affiliation(s)
- Max Stevenson
- Bavarian Center for Battery Technology (BayBatt), University of Bayreuth, Universitätsstraße 30, 95447, Bayreuth, Germany
- Department of Chemistry, University of Bayreuth, Universitätsstraße 30, 95447, Bayreuth, Germany
| | - Sebastian Weiß
- Bavarian Center for Battery Technology (BayBatt), University of Bayreuth, Universitätsstraße 30, 95447, Bayreuth, Germany
- Department of Chemistry, University of Bayreuth, Universitätsstraße 30, 95447, Bayreuth, Germany
| | - Gihoon Cha
- Bavarian Center for Battery Technology (BayBatt), University of Bayreuth, Universitätsstraße 30, 95447, Bayreuth, Germany
- Department of Chemistry, University of Bayreuth, Universitätsstraße 30, 95447, Bayreuth, Germany
| | - Maximilian Schamel
- Bavarian Center for Battery Technology (BayBatt), University of Bayreuth, Universitätsstraße 30, 95447, Bayreuth, Germany
- Chair of Electrical Energy Systems, University of Bayreuth, Universitätsstraße 30, 95447, Bayreuth, Germany
| | - Leonard Jahn
- Bavarian Center for Battery Technology (BayBatt), University of Bayreuth, Universitätsstraße 30, 95447, Bayreuth, Germany
- Chair of Electrical Energy Systems, University of Bayreuth, Universitätsstraße 30, 95447, Bayreuth, Germany
| | - Daniel Friedrich
- Department of Chemistry, University of Bayreuth, Universitätsstraße 30, 95447, Bayreuth, Germany
| | - Michael A Danzer
- Bavarian Center for Battery Technology (BayBatt), University of Bayreuth, Universitätsstraße 30, 95447, Bayreuth, Germany
- Chair of Electrical Energy Systems, University of Bayreuth, Universitätsstraße 30, 95447, Bayreuth, Germany
| | - Jun Young Cheong
- Bavarian Center for Battery Technology (BayBatt), University of Bayreuth, Universitätsstraße 30, 95447, Bayreuth, Germany
- Department of Chemistry, University of Bayreuth, Universitätsstraße 30, 95447, Bayreuth, Germany
| | - Josef Breu
- Bavarian Center for Battery Technology (BayBatt), University of Bayreuth, Universitätsstraße 30, 95447, Bayreuth, Germany
- Department of Chemistry, University of Bayreuth, Universitätsstraße 30, 95447, Bayreuth, Germany
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4
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Parzen M, Kittel M, Friedrich D, Kiprakis A. Reducing energy system model distortions from unintended storage cycling through variable costs. iScience 2022; 26:105729. [PMID: 36594028 PMCID: PMC9804105 DOI: 10.1016/j.isci.2022.105729] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Revised: 10/24/2022] [Accepted: 12/01/2022] [Indexed: 12/12/2022] Open
Abstract
Energy system models are used for policy decisions and technology designs. If not carefully used, models give implausible outputs and mislead decision-making. One implausible effect is "unintended storage cycling", which is observable as simultaneous storage charging and discharging. Methods to remove such misleading effects exist, but are computationally inefficient and sometimes ineffective. Through 124 simulations, we find that determining appropriate levels of variable costs depends on the variable cost allocation to certain components and the solver accuracy used for the optimization. For the latter, if the accuracy is set too loosely, the solver prevents the removal of unintended storage cycling. We further provide a list of recommended variable cost model inputs as well as a minimum threshold that can significantly reduce the magnitude and likeliness of unintended storage cycling. Finally, our results suggest that our approach can remove other similar misleading effects such as unintended line cycling or sector cycling.
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Affiliation(s)
- Maximilian Parzen
- University of Edinburgh, Institute for Energy Systems, Edinburgh EH9 3DW, UK,Corresponding author
| | - Martin Kittel
- German Institute for Economic Research, Mohrenstraße 58, 10117 Berlin, Germany,Technical University Berlin, Department of Energy Systems, Einsteinufer 25 (TA 8), 10587 Berlin, Germany
| | - Daniel Friedrich
- University of Edinburgh, Institute for Energy Systems, Edinburgh EH9 3DW, UK
| | - Aristides Kiprakis
- University of Edinburgh, Institute for Energy Systems, Edinburgh EH9 3DW, UK
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5
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Lüken S, Kurz M, Rommel F, Freitag JC, Ranjbar M, Tharun L, Perner S, Friedrich D, Rogacev M, Grisanti S, Kakkassery V. [PCR-confirmed late-onset Candida albicans endophthalmitis from a retinal biopsy]. Ophthalmologie 2022; 119:958-961. [PMID: 34661702 DOI: 10.1007/s00347-021-01510-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2021] [Revised: 09/19/2021] [Accepted: 09/22/2021] [Indexed: 01/26/2023]
Affiliation(s)
- S Lüken
- Klinik für Augenheilkunde, Universitätsklinikum Schleswig-Holstein, Campus Lübeck, Ratzeburger Allee 160, 23538, Lübeck, Deutschland.
| | - M Kurz
- Klinik für Augenheilkunde, Universitätsklinikum Schleswig-Holstein, Campus Lübeck, Ratzeburger Allee 160, 23538, Lübeck, Deutschland
| | - F Rommel
- Klinik für Augenheilkunde, Universitätsklinikum Schleswig-Holstein, Campus Lübeck, Ratzeburger Allee 160, 23538, Lübeck, Deutschland
| | - J C Freitag
- Klinik für Augenheilkunde, Universitätsklinikum Schleswig-Holstein, Campus Lübeck, Ratzeburger Allee 160, 23538, Lübeck, Deutschland
| | - M Ranjbar
- Klinik für Augenheilkunde, Universitätsklinikum Schleswig-Holstein, Campus Lübeck, Ratzeburger Allee 160, 23538, Lübeck, Deutschland
| | - L Tharun
- Institut für Pathologie, Universitätsklinikum Schleswig-Holstein, Campus Lübeck, Lübeck, Deutschland
| | - S Perner
- Institut für Pathologie, Universitätsklinikum Schleswig-Holstein, Campus Lübeck, Lübeck, Deutschland.,Pathologie, Forschungszentrums Borstel, Leibniz Lungenzentrum, Borstel, Deutschland.,Deutsches Zentrum für Lungenforschung, Borstel, Deutschland
| | - D Friedrich
- Klinik für Infektiologie und Mikrobiologie, Universitätsklinikum Schleswig-Holstein, Campus Lübeck, Lübeck, Deutschland
| | - M Rogacev
- Klinik für Infektiologie und Mikrobiologie, Universitätsklinikum Schleswig-Holstein, Campus Lübeck, Lübeck, Deutschland
| | - S Grisanti
- Klinik für Augenheilkunde, Universitätsklinikum Schleswig-Holstein, Campus Lübeck, Ratzeburger Allee 160, 23538, Lübeck, Deutschland
| | - V Kakkassery
- Klinik für Augenheilkunde, Universitätsklinikum Schleswig-Holstein, Campus Lübeck, Ratzeburger Allee 160, 23538, Lübeck, Deutschland
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6
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Friedrich D, Quintero MA, Hao S, Laing CC, Wolverton C, Kanatzidis MG. AInSn 2S 6 ( A = K, Rb, Cs)─Layered Semiconductors Based on the SnS 2 Structure. Inorg Chem 2022; 61:13525-13531. [PMID: 35960253 DOI: 10.1021/acs.inorgchem.2c02157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
RbInSn2S6 and CsInSn2S6 are yellow two-dimensional (2D) semiconductors featuring anionic SnS2-type layers of edge-sharing (In/Sn)S6 octahedra. These structures are directly derived from the parent structure of SnS2 by replacement of Sn4+ atoms with A+ and In3+ atoms. The compounds crystallize, isotypic to the ion-exchange material KInSn2S6. They adopt the triclinic space group R3̅m (no. 166). The compounds have similar indirect optical band gaps of 2.31(5) eV for Rb and 2.47(5) eV Cs. The measured work functions for each material are ∼5.38 eV. The density functional theory-calculated effective mass values exhibit strong anisotropy due to the 2D nature of the crystal structures and in the case of CsInSn2S6 for hole carriers along the a, b, and c crystallographic directions are 0.30 m0, 0.34 m0, and 2.54 m0, respectively, while for electrons are 0.06 m0, 0.07 m0, and 0.47 m0, respectively.
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Affiliation(s)
- Daniel Friedrich
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Michael A Quintero
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Shiqiang Hao
- Department of Materials Science and Engineering, Northwestern University, Evanston, Illinois 60208, United States
| | - Craig C Laing
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Christopher Wolverton
- Department of Materials Science and Engineering, Northwestern University, Evanston, Illinois 60208, United States
| | - Mercouri G Kanatzidis
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
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7
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Friedrich D. Change in key mechanical properties from postprocess hot pressing of commercial wood-plastic composites with different fibre contents. Polym Bull (Berl) 2022. [DOI: 10.1007/s00289-022-04251-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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8
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Friedrich D, Marintchev A, Arthanari H. The metaphorical swiss army knife: The multitude and diverse roles of HEAT domains in eukaryotic translation initiation. Nucleic Acids Res 2022; 50:5424-5442. [PMID: 35552740 PMCID: PMC9177959 DOI: 10.1093/nar/gkac342] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Revised: 04/20/2022] [Accepted: 04/22/2022] [Indexed: 11/24/2022] Open
Abstract
Biomolecular associations forged by specific interaction among structural scaffolds are fundamental to the control and regulation of cell processes. One such structural architecture, characterized by HEAT repeats, is involved in a multitude of cellular processes, including intracellular transport, signaling, and protein synthesis. Here, we review the multitude and versatility of HEAT domains in the regulation of mRNA translation initiation. Structural and cellular biology approaches, as well as several biophysical studies, have revealed that a number of HEAT domain-mediated interactions with a host of protein factors and RNAs coordinate translation initiation. We describe the basic structural architecture of HEAT domains and briefly introduce examples of the cellular processes they dictate, including nuclear transport by importin and RNA degradation. We then focus on proteins in the translation initiation system featuring HEAT domains, specifically the HEAT domains of eIF4G, DAP5, eIF5, and eIF2Bϵ. Comparative analysis of their remarkably versatile interactions, including protein–protein and protein–RNA recognition, reveal the functional importance of flexible regions within these HEAT domains. Here we outline how HEAT domains orchestrate fundamental aspects of translation initiation and highlight open mechanistic questions in the area.
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Affiliation(s)
- Daniel Friedrich
- Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, USA.,Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.,Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA
| | - Assen Marintchev
- Department of Physiology & Biophysics, Boston University School of Medicine, Boston, MA, USA
| | - Haribabu Arthanari
- Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.,Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA
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9
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Vasileiadou ES, Jiang X, Kepenekian M, Even J, De Siena MC, Klepov VV, Friedrich D, Spanopoulos I, Tu Q, Tajuddin IS, Weiss EA, Kanatzidis MG. Thick-Layer Lead Iodide Perovskites with Bifunctional Organic Spacers Allylammonium and Iodopropylammonium Exhibiting Trap-State Emission. J Am Chem Soc 2022; 144:6390-6409. [PMID: 35378979 DOI: 10.1021/jacs.2c00571] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
The nature of the organic cation in two-dimensional (2D) hybrid lead iodide perovskites tailors the structural and technological features of the resultant material. Herein, we present three new homologous series of (100) lead iodide perovskites with the organic cations allylammonium (AA) containing an unsaturated C═C group and iodopropylammonium (IdPA) containing iodine on the organic chain: (AA)2MAn-1PbnI3n+1 (n = 3-4), [(AA)x(IdPA)1-x]2MAn-1PbnI3n+1 (n = 1-4), and (IdPA)2MAn-1PbnI3n+1 (n = 1-4), as well as their perovskite-related substructures. We report the in situ transformation of AA organic layers into IdPA and the incorporation of these cations simultaneously into the 2D perovskite structure. Single-crystal X-ray diffraction shows that (AA)2MA2Pb3I10 crystallizes in the space group P21/c with a unique inorganic layer offset (0, <1/2), comprising the first example of n = 3 halide perovskite with a monoammonium cation that deviates from the Ruddlesden-Popper (RP) halide structure type. (IdPA)2MA2Pb3I10 and the alloyed [(AA)x(IdPA)1-x]2MA2Pb3I10 crystallize in the RP structure, both in space group P21/c. The adjacent I···I interlayer distance in (AA)2MA2Pb3I10 is ∼5.6 Å, drawing the [Pb3I10]4- layers closer together among all reported n = 3 RP lead iodides. (AA)2MA2Pb3I10 presents band-edge absorption and photoluminescence (PL) emission at around 2.0 eV that is slightly red-shifted in comparison to (IdPA)2MA2Pb3I10. The band structure calculations suggest that both (AA)2MA2Pb3I10 and (IdPA)2MA2Pb3I10 have in-plane effective masses around 0.04m0 and 0.08m0, respectively. IdPA cations have a greater dielectric contribution than AA. The excited-state dynamics investigated by transient absorption (TA) spectroscopy reveal a long-lived (∼100 ps) trap state ensemble with broad-band emission; our evidence suggests that these states appear due to lattice distortions induced by the incorporation of IdPA cations.
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Affiliation(s)
- Eugenia S Vasileiadou
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Xinyi Jiang
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | | | - Jacky Even
- Univ Rennes, INSA Rennes, CNRS, Institut FOTON, UMR 6082, F-35000 Rennes, France
| | - Michael C De Siena
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Vladislav V Klepov
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Daniel Friedrich
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Ioannis Spanopoulos
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Qing Tu
- Department of Materials Science & Engineering, Texas A&M University, College Station, Texas 77840, United States
| | - Imra S Tajuddin
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Emily A Weiss
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Mercouri G Kanatzidis
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
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10
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Friedrich D. Managing the technology transition towards biopolymers: a study of cross-sector experts among German wholesalers. Technology Analysis & Strategic Management 2021. [DOI: 10.1080/09537325.2021.1985106] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Daniel Friedrich
- Faculty of Business Administration, Baden-Württemberg Cooperative State University Mosbach, Mosbach, Germany
- Faculty of Business Administration – Marketing & Innovation, University of Bayreuth, Bayreuth, Germany
- Compolytics Research, Neunkirchen, Germany
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11
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Farmahini AH, Krishnamurthy S, Friedrich D, Brandani S, Sarkisov L. Performance-Based Screening of Porous Materials for Carbon Capture. Chem Rev 2021; 121:10666-10741. [PMID: 34374527 PMCID: PMC8431366 DOI: 10.1021/acs.chemrev.0c01266] [Citation(s) in RCA: 58] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Indexed: 02/07/2023]
Abstract
Computational screening methods have changed the way new materials and processes are discovered and designed. For adsorption-based gas separations and carbon capture, recent efforts have been directed toward the development of multiscale and performance-based screening workflows where we can go from the atomistic structure of an adsorbent to its equilibrium and transport properties at different scales, and eventually to its separation performance at the process level. The objective of this work is to review the current status of this new approach, discuss its potential and impact on the field of materials screening, and highlight the challenges that limit its application. We compile and introduce all the elements required for the development, implementation, and operation of multiscale workflows, hence providing a useful practical guide and a comprehensive source of reference to the scientific communities who work in this area. Our review includes information about available materials databases, state-of-the-art molecular simulation and process modeling tools, and a complete catalogue of data and parameters that are required at each stage of the multiscale screening. We thoroughly discuss the challenges associated with data availability, consistency of the models, and reproducibility of the data and, finally, propose new directions for the future of the field.
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Affiliation(s)
- Amir H. Farmahini
- Department
of Chemical Engineering and Analytical Science, School of Engineering, The University of Manchester, Manchester M13 9PL, United Kingdom
| | | | - Daniel Friedrich
- School
of Engineering, Institute for Energy Systems, The University of Edinburgh, Edinburgh EH9 3FB, United Kingdom
| | - Stefano Brandani
- School
of Engineering, Institute of Materials and Processes, The University of Edinburgh, Sanderson Building, Edinburgh EH9 3FB, United Kingdom
| | - Lev Sarkisov
- Department
of Chemical Engineering and Analytical Science, School of Engineering, The University of Manchester, Manchester M13 9PL, United Kingdom
- School
of Engineering, Institute of Materials and Processes, The University of Edinburgh, Sanderson Building, Edinburgh EH9 3FB, United Kingdom
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12
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Friedrich D. Comparative analysis of sustainability measures in the apparel industry: An empirical consumer and market study in Germany. J Environ Manage 2021; 289:112536. [PMID: 33845266 DOI: 10.1016/j.jenvman.2021.112536] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2021] [Revised: 03/16/2021] [Accepted: 03/31/2021] [Indexed: 06/12/2023]
Abstract
The pressure on the apparel industry to make its products more sustainable is growing. Concrete measures have hardly been taken so far, also because they aim to avoid consumption which reduces profits. Studies mostly examine impacts on the environment, but not how the market volume can remain at a maximum for producers. To uncover direct market effects from sustainability approaches, this study asked 500 German consumers about their willingness-to-pay and preference order for three different measures, namely "slowing in consumption", "recyclability of petrochemical clothing" or its "production from bioplastics". An outdoor trekking jacket served as test object, and influences from sociodemographic and latent variables, as sportiness and environmental awareness, were measured. The results were mapped in a market model from which the output volume was derived. It was found that interest in the topic of plastics-containing outdoor clothing was rather determined by the application. This increased with the sportiness of the respondents (r = 0.13; p = 0.003), but not with their personal environmental awareness. Consent to bioplastics use did not depend on the level of experience, but older consumers appreciated this option more (p = 0.027). Only 20% of the respondents favoured slowing, 26% bioplastics, but 53% recycling of petroplastics. Therefore, research should investigate recyclability, policy should support this measure, and companies should practice take-back and reuse in new clothing. Consumers can maintain fast consumption and would even accept higher prices.
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Affiliation(s)
- Daniel Friedrich
- Baden-Württemberg Cooperative State University Mosbach, Arnold-Janssen-Straße 9-13, 74821, Mosbach, Germany; University of Bayreuth, Faculty of Business Administration - Marketing & Innovation, Universitätsstraße 30, 95447, Bayreuth, Germany; Compolytics Research, Schwanheimer Straße 69, 74867, Neunkirchen, Germany.
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13
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Friedrich D, Byun HR, Hao S, Patel S, Wolverton C, Jang JI, Kanatzidis MG. Layered and Cubic Semiconductors AGaM′Q4 (A+ = K+, Rb+, Cs+, Tl+; M′4+ = Ge4+, Sn4+; Q2– = S2–, Se2–) and High Third-Harmonic Generation. J Am Chem Soc 2020; 142:17730-17742. [DOI: 10.1021/jacs.0c08638] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Daniel Friedrich
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Hye Ryung Byun
- Department of Physics, Sogang University, 35 Baekbeom-ro, Mapo-gu, Seoul 04107, Korea
| | - Shiqiang Hao
- Department of Materials Science and Engineering, Northwestern University, Evanston, Illinois 60208, United States
| | - Shane Patel
- Department of Materials Science and Engineering, Northwestern University, Evanston, Illinois 60208, United States
| | - Chris Wolverton
- Department of Materials Science and Engineering, Northwestern University, Evanston, Illinois 60208, United States
| | - Joon Ik Jang
- Department of Physics, Sogang University, 35 Baekbeom-ro, Mapo-gu, Seoul 04107, Korea
| | - Mercouri G. Kanatzidis
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
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14
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Gerland L, Friedrich D, Hopf L, Donovan EJ, Wallmann A, Erdmann N, Diehl A, Bommer M, Buzar K, Ibrahim M, Schmieder P, Dobbek H, Zouni A, Bondar A, Dau H, Oschkinat H. Front Cover: pH‐Dependent Protonation of Surface Carboxylate Groups in PsbO Enables Local Buffering and Triggers Structural Changes (ChemBioChem 11/2020). Chembiochem 2020. [DOI: 10.1002/cbic.202000274] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Lisa Gerland
- Leibniz-Forschungsinstitut für Molekulare PharmakologieDepartment of NMR-Supported Structural Biology Robert-Rössle-Strasse 10 13125 Berlin Germany
- Freie Universität BerlinDepartment of Biology, Chemistry and Pharmacy Thielallee 63 14195 Berlin Germany
| | - Daniel Friedrich
- Leibniz-Forschungsinstitut für Molekulare PharmakologieDepartment of NMR-Supported Structural Biology Robert-Rössle-Strasse 10 13125 Berlin Germany
- Freie Universität BerlinDepartment of Biology, Chemistry and Pharmacy Thielallee 63 14195 Berlin Germany
| | - Linus Hopf
- Leibniz-Forschungsinstitut für Molekulare PharmakologieDepartment of NMR-Supported Structural Biology Robert-Rössle-Strasse 10 13125 Berlin Germany
- Freie Universität BerlinDepartment of Biology, Chemistry and Pharmacy Thielallee 63 14195 Berlin Germany
| | - Eavan J. Donovan
- Leibniz-Forschungsinstitut für Molekulare PharmakologieDepartment of NMR-Supported Structural Biology Robert-Rössle-Strasse 10 13125 Berlin Germany
| | - Arndt Wallmann
- Leibniz-Forschungsinstitut für Molekulare PharmakologieDepartment of NMR-Supported Structural Biology Robert-Rössle-Strasse 10 13125 Berlin Germany
| | - Natalja Erdmann
- Leibniz-Forschungsinstitut für Molekulare PharmakologieDepartment of NMR-Supported Structural Biology Robert-Rössle-Strasse 10 13125 Berlin Germany
| | - Anne Diehl
- Leibniz-Forschungsinstitut für Molekulare PharmakologieDepartment of NMR-Supported Structural Biology Robert-Rössle-Strasse 10 13125 Berlin Germany
| | - Martin Bommer
- Max-Delbrück-Centrum für Molekulare Medizin Robert-Rössle-Strasse 10 13125 Berlin Germany
| | - Krzysztof Buzar
- Freie Universität BerlinDepartment of Physics, Theoretical Molecular Biophysics Arnimallee 14 14195 Berlin Germany
| | - Mohamed Ibrahim
- Humboldt-Universität zu BerlinInstitute of Biology Philippstrasse 13 10099 Berlin Germany
| | - Peter Schmieder
- Leibniz-Forschungsinstitut für Molekulare PharmakologieDepartment of NMR-Supported Structural Biology Robert-Rössle-Strasse 10 13125 Berlin Germany
| | - Holger Dobbek
- Humboldt-Universität zu BerlinInstitute of Biology Philippstrasse 13 10099 Berlin Germany
| | - Athina Zouni
- Humboldt-Universität zu BerlinInstitute of Biology Philippstrasse 13 10099 Berlin Germany
| | - Ana‐Nicoleta Bondar
- Freie Universität BerlinDepartment of Physics, Theoretical Molecular Biophysics Arnimallee 14 14195 Berlin Germany
| | - Holger Dau
- Freie Universität BerlinDepartment of Physics, Biophysics and Photosynthesis Arnimallee 14 14195 Berlin Germany
| | - Hartmut Oschkinat
- Leibniz-Forschungsinstitut für Molekulare PharmakologieDepartment of NMR-Supported Structural Biology Robert-Rössle-Strasse 10 13125 Berlin Germany
- Freie Universität BerlinDepartment of Biology, Chemistry and Pharmacy Thielallee 63 14195 Berlin Germany
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15
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Friedrich D, Perodeau J, Nieuwkoop AJ, Oschkinat H. MAS NMR detection of hydrogen bonds for protein secondary structure characterization. J Biomol NMR 2020; 74:247-256. [PMID: 32185644 PMCID: PMC7211791 DOI: 10.1007/s10858-020-00307-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2019] [Accepted: 03/09/2020] [Indexed: 05/26/2023]
Abstract
Hydrogen bonds are essential for protein structure and function, making experimental access to long-range interactions between amide protons and heteroatoms invaluable. Here we show that measuring distance restraints involving backbone hydrogen atoms and carbonyl- or α-carbons enables the identification of secondary structure elements based on hydrogen bonds, provides long-range contacts and validates spectral assignments. To this end, we apply specifically tailored, proton-detected 3D (H)NCOH and (H)NCAH experiments under fast magic angle spinning (MAS) conditions to microcrystalline samples of SH3 and GB1. We observe through-space, semi-quantitative correlations between protein backbone carbon atoms and multiple amide protons, enabling us to determine hydrogen bonding patterns and thus to identify β-sheet topologies and α-helices in proteins. Our approach shows the value of fast MAS and suggests new routes in probing both secondary structure and the role of functionally-relevant protons in all targets of solid-state MAS NMR.
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Affiliation(s)
- Daniel Friedrich
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Robert-Rössle-Strasse 10, 13125, Berlin, Germany
- Institut für Chemie und Biochemie, Freie Universität Berlin, Takustrasse 3, 14195, Berlin, Germany
- Department of Molecular and Cellular Biology, Harvard University, 52 Oxford Street, Cambridge, MA, 02138, USA
- Department of Cancer Biology, Dana-Farber Cancer Institute, 360 Longwood Avenue, Boston, MA, 02215, USA
| | - Jacqueline Perodeau
- Department of Chemistry and Chemical Biology, Rutgers University, 123 Bevier Rd., Piscataway, NJ, 08854, United States
| | - Andrew J Nieuwkoop
- Department of Chemistry and Chemical Biology, Rutgers University, 123 Bevier Rd., Piscataway, NJ, 08854, United States.
| | - Hartmut Oschkinat
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Robert-Rössle-Strasse 10, 13125, Berlin, Germany.
- Institut für Chemie und Biochemie, Freie Universität Berlin, Takustrasse 3, 14195, Berlin, Germany.
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16
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Gerland L, Friedrich D, Hopf L, Donovan EJ, Wallmann A, Erdmann N, Diehl A, Bommer M, Buzar K, Ibrahim M, Schmieder P, Dobbek H, Zouni A, Bondar AN, Dau H, Oschkinat H. pH-Dependent Protonation of Surface Carboxylate Groups in PsbO Enables Local Buffering and Triggers Structural Changes. Chembiochem 2020; 21:1597-1604. [PMID: 31930693 PMCID: PMC7318136 DOI: 10.1002/cbic.201900739] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2019] [Indexed: 11/11/2022]
Abstract
Photosystem II (PSII) catalyzes the splitting of water, releasing protons and dioxygen. Its highly conserved subunit PsbO extends from the oxygen‐evolving center (OEC) into the thylakoid lumen and stabilizes the catalytic Mn4CaO5 cluster. The high degree of conservation of accessible negatively charged surface residues in PsbO suggests additional functions, as local pH buffer or by affecting the flow of protons. For this discussion, we provide an experimental basis, through the determination of pKa values of water‐accessible aspartate and glutamate side‐chain carboxylate groups by means of NMR. Their distribution is strikingly uneven, with high pKa values around 4.9 clustered on the luminal PsbO side and values below 3.5 on the side facing PSII. pH‐dependent changes in backbone chemical shifts in the area of the lumen‐exposed loops are observed, indicating conformational changes. In conclusion, we present a site‐specific analysis of carboxylate group proton affinities in PsbO, providing a basis for further understanding of proton transport in photosynthesis.
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Affiliation(s)
- Lisa Gerland
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Department of NMR-Supported Structural Biology, Robert-Rössle-Strasse 10, 13125, Berlin, Germany.,Freie Universität Berlin, Department of Biology, Chemistry and Pharmacy, Thielallee 63, 14195, Berlin, Germany
| | - Daniel Friedrich
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Department of NMR-Supported Structural Biology, Robert-Rössle-Strasse 10, 13125, Berlin, Germany.,Freie Universität Berlin, Department of Biology, Chemistry and Pharmacy, Thielallee 63, 14195, Berlin, Germany
| | - Linus Hopf
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Department of NMR-Supported Structural Biology, Robert-Rössle-Strasse 10, 13125, Berlin, Germany.,Freie Universität Berlin, Department of Biology, Chemistry and Pharmacy, Thielallee 63, 14195, Berlin, Germany
| | - Eavan J Donovan
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Department of NMR-Supported Structural Biology, Robert-Rössle-Strasse 10, 13125, Berlin, Germany
| | - Arndt Wallmann
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Department of NMR-Supported Structural Biology, Robert-Rössle-Strasse 10, 13125, Berlin, Germany
| | - Natalja Erdmann
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Department of NMR-Supported Structural Biology, Robert-Rössle-Strasse 10, 13125, Berlin, Germany
| | - Anne Diehl
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Department of NMR-Supported Structural Biology, Robert-Rössle-Strasse 10, 13125, Berlin, Germany
| | - Martin Bommer
- Max-Delbrück-Centrum für Molekulare Medizin, Robert-Rössle-Strasse 10, 13125, Berlin, Germany
| | - Krzysztof Buzar
- Freie Universität Berlin, Department of Physics, Theoretical Molecular Biophysics, Arnimallee 14, 14195, Berlin, Germany
| | - Mohamed Ibrahim
- Humboldt-Universität zu Berlin, Institute of Biology, Philippstrasse 13, 10099, Berlin, Germany
| | - Peter Schmieder
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Department of NMR-Supported Structural Biology, Robert-Rössle-Strasse 10, 13125, Berlin, Germany
| | - Holger Dobbek
- Humboldt-Universität zu Berlin, Institute of Biology, Philippstrasse 13, 10099, Berlin, Germany
| | - Athina Zouni
- Humboldt-Universität zu Berlin, Institute of Biology, Philippstrasse 13, 10099, Berlin, Germany
| | - Ana-Nicoleta Bondar
- Freie Universität Berlin, Department of Physics, Theoretical Molecular Biophysics, Arnimallee 14, 14195, Berlin, Germany
| | - Holger Dau
- Freie Universität Berlin, Department of Physics, Biophysics and Photosynthesis, Arnimallee 14, 14195, Berlin, Germany
| | - Hartmut Oschkinat
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Department of NMR-Supported Structural Biology, Robert-Rössle-Strasse 10, 13125, Berlin, Germany.,Freie Universität Berlin, Department of Biology, Chemistry and Pharmacy, Thielallee 63, 14195, Berlin, Germany
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17
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Sharma I, Friedrich D, Golden T, Brandani S. Monolithic Adsorbent-Based Rapid-Cycle Vacuum Pressure Swing Adsorption Process for Carbon Capture from Small-Scale Steam Methane Reforming. Ind Eng Chem Res 2020. [DOI: 10.1021/acs.iecr.9b05337] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ishan Sharma
- School of Engineering, The University of Edinburgh, The King’s Buildings, Edinburgh EH9 3FB, United Kingdom
| | - Daniel Friedrich
- School of Engineering, The University of Edinburgh, The King’s Buildings, Edinburgh EH9 3FB, United Kingdom
| | - Timothy Golden
- Air Products and Chemicals, Inc., 7201 Hamilton Boulevard, Allentown, Pennsylvania 18195, United States
| | - Stefano Brandani
- School of Engineering, The University of Edinburgh, The King’s Buildings, Edinburgh EH9 3FB, United Kingdom
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18
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Dang W, Friedrich D, Brandani S. Dual-piston pressure swing adsorption system: Instrumentation and characterisation with pure gas experiments. Chem Eng Sci 2020. [DOI: 10.1016/j.ces.2019.115423] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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19
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Sharma I, Mennitto R, Friedrich D, Brandani S. Combining the Nonuniform Structure and Flow Maldistribution for the Accurate Prediction of the Process Performance of Monolithic Adsorbent Systems. Ind Eng Chem Res 2020. [DOI: 10.1021/acs.iecr.9b05845] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ishan Sharma
- School of Engineering, The University of Edinburgh, The King’s Buildings, Edinburgh EH9 3FB, U.K
| | - Roberto Mennitto
- School of Engineering, The University of Edinburgh, The King’s Buildings, Edinburgh EH9 3FB, U.K
| | - Daniel Friedrich
- School of Engineering, The University of Edinburgh, The King’s Buildings, Edinburgh EH9 3FB, U.K
| | - Stefano Brandani
- School of Engineering, The University of Edinburgh, The King’s Buildings, Edinburgh EH9 3FB, U.K
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20
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Friedrich D, Brünig FN, Nieuwkoop AJ, Netz RR, Hegemann P, Oschkinat H. Collective exchange processes reveal an active site proton cage in bacteriorhodopsin. Commun Biol 2020; 3:4. [PMID: 31925324 PMCID: PMC6941954 DOI: 10.1038/s42003-019-0733-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2019] [Accepted: 12/02/2019] [Indexed: 01/01/2023] Open
Abstract
Proton translocation across membranes is vital to all kingdoms of life. Mechanistically, it relies on characteristic proton flows and modifications of hydrogen bonding patterns, termed protonation dynamics, which can be directly observed by fast magic angle spinning (MAS) NMR. Here, we demonstrate that reversible proton displacement in the active site of bacteriorhodopsin already takes place in its equilibrated dark-state, providing new information on the underlying hydrogen exchange processes. In particular, MAS NMR reveals proton exchange at D85 and the retinal Schiff base, suggesting a tautomeric equilibrium and thus partial ionization of D85. We provide evidence for a proton cage and detect a preformed proton path between D85 and the proton shuttle R82. The protons at D96 and D85 exchange with water, in line with ab initio molecular dynamics simulations. We propose that retinal isomerization makes the observed proton exchange processes irreversible and delivers a proton towards the extracellular release site. Daniel Friedrich et al. show that reversible proton translocation occurs in the dark–state of bacteriorhodopsin, involving the retinal Schiff base and D85 exchanging protons with H2O. They find evidence of an active site proton cage and possible proton transfer via R82.
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Affiliation(s)
- Daniel Friedrich
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Str. 10, 13125, Berlin, Germany.,Freie Universität Berlin, Institut für Chemie und Biochemie, 14195, Berlin, Germany.,Department of Molecular and Cellular Biology, Harvard University, 52 Oxford Street, Cambridge, MA, 02138, USA.,Department of Cancer Biology, Dana-Farber Cancer Institute, 360 Longwood Avenue, Boston, MA, 02215, USA
| | - Florian N Brünig
- Freie Universität Berlin, Fachbereich Physik, 14195, Berlin, Germany
| | - Andrew J Nieuwkoop
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Str. 10, 13125, Berlin, Germany.,Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, 123 Bevier Road, Piscataway, NJ, 08854, USA
| | - Roland R Netz
- Freie Universität Berlin, Fachbereich Physik, 14195, Berlin, Germany
| | - Peter Hegemann
- Humboldt-Universität zu Berlin, Institut für Biologie, Invalidenstr. 42, 10115, Berlin, Germany
| | - Hartmut Oschkinat
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Str. 10, 13125, Berlin, Germany. .,Freie Universität Berlin, Institut für Chemie und Biochemie, 14195, Berlin, Germany.
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21
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Huber B, Pres S, Wittmann E, Dietrich L, Lüttig J, Fersch D, Krauss E, Friedrich D, Kern J, Lisinetskii V, Hensen M, Hecht B, Bratschitsch R, Riedle E, Brixner T. Space- and time-resolved UV-to-NIR surface spectroscopy and 2D nanoscopy at 1 MHz repetition rate. Rev Sci Instrum 2019; 90:113103. [PMID: 31779407 DOI: 10.1063/1.5115322] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2019] [Accepted: 10/16/2019] [Indexed: 06/10/2023]
Abstract
We describe a setup for time-resolved photoemission electron microscopy with aberration correction enabling 3 nm spatial resolution and sub-20 fs temporal resolution. The latter is realized by our development of a widely tunable (215-970 nm) noncollinear optical parametric amplifier (NOPA) at 1 MHz repetition rate. We discuss several exemplary applications. Efficient photoemission from plasmonic Au nanoresonators is investigated with phase-coherent pulse pairs from an actively stabilized interferometer. More complex excitation fields are created with a liquid-crystal-based pulse shaper enabling amplitude and phase shaping of NOPA pulses with spectral components from 600 to 800 nm. With this system we demonstrate spectroscopy within a single plasmonic nanoslit resonator by spectral amplitude shaping and investigate the local field dynamics with coherent two-dimensional (2D) spectroscopy at the nanometer length scale ("2D nanoscopy"). We show that the local response varies across a distance as small as 33 nm in our sample. Further, we report two-color pump-probe experiments using two independent NOPA beamlines. We extract local variations of the excited-state dynamics of a monolayered 2D material (WSe2) that we correlate with low-energy electron microscopy (LEEM) and reflectivity measurements. Finally, we demonstrate the in situ sample preparation capabilities for organic thin films and their characterization via spatially resolved electron diffraction and dark-field LEEM.
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Affiliation(s)
- Bernhard Huber
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Sebastian Pres
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Emanuel Wittmann
- Lehrstuhl für BioMolekulare Optik, Ludwig-Maximilians-Universität München, Oettingenstr. 67, 80538 München, Germany
| | - Lysanne Dietrich
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Julian Lüttig
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Daniel Fersch
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Enno Krauss
- NanoOptics & Biophotonics Group, Experimental Physics 5, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Daniel Friedrich
- NanoOptics & Biophotonics Group, Experimental Physics 5, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Johannes Kern
- Institute of Physics and Center for Nanotechnology, University of Münster, Wilhelm-Klemm-Str. 10, 48149 Münster, Germany
| | - Victor Lisinetskii
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Matthias Hensen
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Bert Hecht
- NanoOptics & Biophotonics Group, Experimental Physics 5, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Rudolf Bratschitsch
- Institute of Physics and Center for Nanotechnology, University of Münster, Wilhelm-Klemm-Str. 10, 48149 Münster, Germany
| | - Eberhard Riedle
- Lehrstuhl für BioMolekulare Optik, Ludwig-Maximilians-Universität München, Oettingenstr. 67, 80538 München, Germany
| | - Tobias Brixner
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
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22
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Dang W, Friedrich D, Brandani S. WITHDRAWN: Dual-Piston Pressure Swing Adsorption system: Instrumentation and characterisation with pure gas experiments. Chemical Engineering Science: X 2019. [DOI: 10.1016/j.cesx.2019.100045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
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23
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Hensen M, Huber B, Friedrich D, Krauss E, Pres S, Grimm P, Fersch D, Lüttig J, Lisinetskii V, Hecht B, Brixner T. Spatial Variations in Femtosecond Field Dynamics within a Plasmonic Nanoresonator Mode. Nano Lett 2019; 19:4651-4658. [PMID: 31181160 DOI: 10.1021/acs.nanolett.9b01672] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Plasmonic resonators can be designed to support spectrally well-separated discrete modes. The associated characteristic spatial patterns of intense electromagnetic hot-spots can be exploited to enhance light-matter interaction. Here, we study the local field dynamics of individual hot-spots within a nanoslit resonator by detecting characteristic changes of the photoelectron emission signal on a scale of ∼12 nm using time-resolved photoemission electron microscopy (TR-PEEM) and by excitation with the output from a 20 fs, 1 MHz noncollinear optical parametric amplifier (NOPA). Surprisingly, we detect apparent spatial variations of the Q-factor and resonance frequency that are commonly considered to be global properties for a single mode. By using the concept of quasinormal modes we explain these local differences by crosstalk of adjacent resonator modes. Our findings are important in view of time-domain studies of plasmon-mediated strong light-matter coupling at ambient conditions.
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Affiliation(s)
- Matthias Hensen
- Institut für Physikalische und Theoretische Chemie , Universität Würzburg , Am Hubland, 97074 Würzburg , Germany
| | - Bernhard Huber
- Institut für Physikalische und Theoretische Chemie , Universität Würzburg , Am Hubland, 97074 Würzburg , Germany
| | - Daniel Friedrich
- NanoOptics & Biophotonics Group, Experimental Physics 5 , Universität Würzburg , Am Hubland, 97074 Würzburg , Germany
| | - Enno Krauss
- NanoOptics & Biophotonics Group, Experimental Physics 5 , Universität Würzburg , Am Hubland, 97074 Würzburg , Germany
| | - Sebastian Pres
- Institut für Physikalische und Theoretische Chemie , Universität Würzburg , Am Hubland, 97074 Würzburg , Germany
| | - Philipp Grimm
- NanoOptics & Biophotonics Group, Experimental Physics 5 , Universität Würzburg , Am Hubland, 97074 Würzburg , Germany
| | - Daniel Fersch
- Institut für Physikalische und Theoretische Chemie , Universität Würzburg , Am Hubland, 97074 Würzburg , Germany
| | - Julian Lüttig
- Institut für Physikalische und Theoretische Chemie , Universität Würzburg , Am Hubland, 97074 Würzburg , Germany
| | - Victor Lisinetskii
- Institut für Physikalische und Theoretische Chemie , Universität Würzburg , Am Hubland, 97074 Würzburg , Germany
| | - Bert Hecht
- NanoOptics & Biophotonics Group, Experimental Physics 5 , Universität Würzburg , Am Hubland, 97074 Würzburg , Germany
| | - Tobias Brixner
- Institut für Physikalische und Theoretische Chemie , Universität Würzburg , Am Hubland, 97074 Würzburg , Germany
- Center for Nanosystems Chemistry (CNC) , Universität Würzburg , Theodor-Boveri-Weg, 97074 Würzburg , Germany
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Großmann S, Friedrich D, Karolak M, Kullock R, Krauss E, Emmerling M, Sangiovanni G, Hecht B. Nonclassical Optical Properties of Mesoscopic Gold. Phys Rev Lett 2019; 122:246802. [PMID: 31322365 DOI: 10.1103/physrevlett.122.246802] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2018] [Revised: 04/07/2019] [Indexed: 06/10/2023]
Abstract
Gold nanostructures have important applications in nanoelectronics, nano-optics, and in precision metrology due to their intriguing optoelectronic properties. These properties are governed by the bulk band structure but to some extent are tunable via geometrical resonances. Here we show that the band structure of gold itself exhibits significant size-dependent changes already for mesoscopic critical dimensions below 30 nm. To suppress the effects of geometrical resonances and grain boundaries, we prepared atomically flat ultrathin films of various thicknesses by utilizing large chemically grown single-crystalline gold platelets. We experimentally probe thickness-dependent changes of the band structure by means of two-photon photoluminescence and observe a surprising 100-fold increase of the nonlinear signal when the gold film thickness is reduced below 30 nm allowing us to optically resolve single-unit-cell steps. The effect is well explained by density functional calculations of the thickness-dependent 2D band structure of gold.
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Affiliation(s)
- Swen Großmann
- Nano-Optics and Biophotonics Group, Department of Experimental Physics 5, Wilhelm-Conrad-Röntgen-Center for Complex Material Systems (RCCM), University of Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Daniel Friedrich
- Nano-Optics and Biophotonics Group, Department of Experimental Physics 5, Wilhelm-Conrad-Röntgen-Center for Complex Material Systems (RCCM), University of Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Michael Karolak
- Institute for Theoretical Physics and Astrophysics and Würzburg-Dresden Cluster of Excellence ct.qmat, University of Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - René Kullock
- Nano-Optics and Biophotonics Group, Department of Experimental Physics 5, Wilhelm-Conrad-Röntgen-Center for Complex Material Systems (RCCM), University of Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Enno Krauss
- Nano-Optics and Biophotonics Group, Department of Experimental Physics 5, Wilhelm-Conrad-Röntgen-Center for Complex Material Systems (RCCM), University of Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Monika Emmerling
- Nano-Optics and Biophotonics Group, Department of Experimental Physics 5, Wilhelm-Conrad-Röntgen-Center for Complex Material Systems (RCCM), University of Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Giorgio Sangiovanni
- Institute for Theoretical Physics and Astrophysics and Würzburg-Dresden Cluster of Excellence ct.qmat, University of Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Bert Hecht
- Nano-Optics and Biophotonics Group, Department of Experimental Physics 5, Wilhelm-Conrad-Röntgen-Center for Complex Material Systems (RCCM), University of Würzburg, Am Hubland, 97074 Würzburg, Germany
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25
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Huber B, Hensen M, Pres S, Lisinetskii V, Luttig J, Wittmann E, Krauss E, Friedrich D, Hecht B, Riedle E, Brixner T. Time-resolved photoemission electron microscopy of a plasmonic slit resonator using 1 MHz, 25 fs, UV-to-NIR-tunable pulses. EPJ Web Conf 2019. [DOI: 10.1051/epjconf/201920508002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We discriminate different field dynamics across distances as small as 33 nm within a plasmonic slit resonator using aberration-corrected photoemission electron microscopy and a tunable broadband optical parametric amplifier at 1 MHz repetition rate.
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Friedrich D, Greim D, Schlosser M, Siegel R, Senker J, Pfitzner A. Synthesis and Characterization of Cs
4
Ga
6
Q
11
(Q=S, Se): Chalcogenometalates with Exotic Polymeric Anions. Angew Chem Int Ed Engl 2018; 57:16210-16214. [DOI: 10.1002/anie.201805239] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2018] [Indexed: 11/08/2022]
Affiliation(s)
- Daniel Friedrich
- Institut für Anorganische ChemieUniversität Regensburg Universitätsstraße 31 93040 Regensburg Germany
| | - Dominik Greim
- Lehrstuhl für Anorganische Chemie IIIUniversität Bayreuth 95440 Bayreuth Germany
| | - Marc Schlosser
- Institut für Anorganische ChemieUniversität Regensburg Universitätsstraße 31 93040 Regensburg Germany
| | - Renée Siegel
- Lehrstuhl für Anorganische Chemie IIIUniversität Bayreuth 95440 Bayreuth Germany
| | - Jürgen Senker
- Lehrstuhl für Anorganische Chemie IIIUniversität Bayreuth 95440 Bayreuth Germany
| | - Arno Pfitzner
- Institut für Anorganische ChemieUniversität Regensburg Universitätsstraße 31 93040 Regensburg Germany
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27
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Friedrich D, Greim D, Schlosser M, Siegel R, Senker J, Pfitzner A. Synthese und Charakterisierung von Cs
4
Ga
6
Q
11
(
Q
=S, Se) – Chalkogenogallate mit außergewöhnlichen polymeren Anionen. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201805239] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Daniel Friedrich
- Institut für Anorganische ChemieUniversität Regensburg Universitätsstraße 31 93040 Regensburg Deutschland
| | - Dominik Greim
- Lehrstuhl für Anorganische Chemie IIIUniversität Bayreuth 95440 Bayreuth Deutschland
| | - Marc Schlosser
- Institut für Anorganische ChemieUniversität Regensburg Universitätsstraße 31 93040 Regensburg Deutschland
| | - Renée Siegel
- Lehrstuhl für Anorganische Chemie IIIUniversität Bayreuth 95440 Bayreuth Deutschland
| | - Jürgen Senker
- Lehrstuhl für Anorganische Chemie IIIUniversität Bayreuth 95440 Bayreuth Deutschland
| | - Arno Pfitzner
- Institut für Anorganische ChemieUniversität Regensburg Universitätsstraße 31 93040 Regensburg Deutschland
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28
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Farmahini AH, Krishnamurthy S, Friedrich D, Brandani S, Sarkisov L. From Crystal to Adsorption Column: Challenges in Multiscale Computational Screening of Materials for Adsorption Separation Processes. Ind Eng Chem Res 2018. [DOI: 10.1021/acs.iecr.8b03065] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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29
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Hahn J, Bock B, Muth CM, Pfaue A, Friedrich D, Hoffmann TK, Greve J. [The ulm emergency algorithm for the acute treatment of drug-induced, bradykinin-mediated angioedema]. Med Klin Intensivmed Notfmed 2018; 114:708-716. [PMID: 30232503 DOI: 10.1007/s00063-018-0483-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2018] [Revised: 07/16/2018] [Accepted: 08/05/2018] [Indexed: 12/20/2022]
Abstract
BACKGROUND Bradykinin-mediated, drug-induced edema like ACE-inhibitor-induced angioedema (ACEi AE) is almost exclusively located in the head and neck region and is potentially life threatening. To date, there are no guidelines or officially-approved treatments available for this pathology. OBJECTIVES We sought to provide a structured therapeutic algorithm for the acute treatment of drug-induced bradykinin-mediated angioedema. MATERIALS AND METHODS We analyzed data (especially the course of disease and therapy) of all patients with acute angioedema, who presented to the Department of Otorhinolaryngology, Head and Neck Surgery at the University of Ulm (2010-2015). We also conducted a literature review on PubMed with the terms "acute angioedema", "angioedema emergency", "ACE angioedema", "bradykinin angioedema" and "angioedema therapy". Other fundamental references were the recent German guidelines "hereditary angioedema", "anaphylaxis" and "airway management". RESULTS An emergency algorithm was generated as a flowchart for the acute therapy of bradykinin-mediated drug-induced angioedema was generated. We focused on the decision criteria for intubation/airway management and pharmacological therapy: antihistamines and glucocorticoids versus anti-bradykinin treatment. Furthermore, recommendations for inpatient monitoring have been derived. CONCLUSION/DISCUSSION To date, therapy of drug-induced bradykinin-mediated angioedema is performed according to an "off-label" use and without officially-approved guidelines. The presented emergency algorithm provides a first approach for a structured therapeutic concept for a potentially life-threatening pathology.
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Affiliation(s)
- J Hahn
- Klinik für Hals‑, Nasen- und Ohrenheilkunde, Kopf- und Halschirurgie, Universitätsklinikum Ulm, Frauensteige 12, 89075, Ulm, Deutschland.
| | - B Bock
- Klinik für Anästhesiologie, Universitätsklinikum Ulm, Albert-Einstein-Allee 23, 89081, Ulm, Deutschland
| | - C-M Muth
- Klinik für Anästhesiologie, Universitätsklinikum Ulm, Albert-Einstein-Allee 23, 89081, Ulm, Deutschland
| | - A Pfaue
- Klinik für Hals‑, Nasen- und Ohrenheilkunde, Kopf- und Halschirurgie, Universitätsklinikum Ulm, Frauensteige 12, 89075, Ulm, Deutschland
| | - D Friedrich
- Klinik für Hals‑, Nasen- und Ohrenheilkunde, Kopf- und Halschirurgie, Universitätsklinikum Ulm, Frauensteige 12, 89075, Ulm, Deutschland
| | - T K Hoffmann
- Klinik für Hals‑, Nasen- und Ohrenheilkunde, Kopf- und Halschirurgie, Universitätsklinikum Ulm, Frauensteige 12, 89075, Ulm, Deutschland
| | - J Greve
- Klinik für Hals‑, Nasen- und Ohrenheilkunde, Kopf- und Halschirurgie, Universitätsklinikum Ulm, Frauensteige 12, 89075, Ulm, Deutschland
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30
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Friedrich D, Greil S, Block T, Heletta L, Pöttgen R, Pfitzner A. Synthesis and Characterization of Ag2MnSnS4, a New Diamond-like Semiconductor. Z Anorg Allg Chem 2018. [DOI: 10.1002/zaac.201800142] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Daniel Friedrich
- Institut für Anorganische Chemie; Universität Regensburg; Universitätsstraße 31 93040 Regensburg Germany
| | - Sebastian Greil
- Institut für Anorganische Chemie; Universität Regensburg; Universitätsstraße 31 93040 Regensburg Germany
| | - Theresa Block
- Institut für Anorganische und Analytische Chemie; Westfälische Wilhelms-Universität Münster; Corrensstraße 30 48149 Münster Germany
| | - Lukas Heletta
- Institut für Anorganische und Analytische Chemie; Westfälische Wilhelms-Universität Münster; Corrensstraße 30 48149 Münster Germany
| | - Rainer Pöttgen
- Institut für Anorganische und Analytische Chemie; Westfälische Wilhelms-Universität Münster; Corrensstraße 30 48149 Münster Germany
| | - Arno Pfitzner
- Institut für Anorganische Chemie; Universität Regensburg; Universitätsstraße 31 93040 Regensburg Germany
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31
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Friedrich D, Schlosser M, Näther C, Pfitzner A. In Situ X-ray Diffraction Study of the Thermal Decomposition of Selenogallates Cs 2[Ga 2(Se 2) 2- xSe 2+ x] ( x = 0, 1, 2). Inorg Chem 2018; 57:5292-5298. [PMID: 29667827 DOI: 10.1021/acs.inorgchem.8b00324] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The selenogallates CsGaSe3 and Cs2Ga2Se5 release gaseous selenium upon heating. An in situ high-temperature X-ray powder diffraction analysis revealed a two-step degradation process from CsGaSe3 to Cs2Ga2Se5 and finally to CsGaSe2. During each step, one Se22- unit of the anionic chains in Cs2[Ga2(Se2)2- xSe2+ x] ( x = 0, 1, 2) decomposes, and one equivalent of selenium is released. This thermal decomposition can be reverted by simple addition of elemental selenium and subsequent annealing of the samples below the decomposition temperature. The influence of the diselenide units in the anionic selenogallate chains on the optical properties and electronic structures was further studied by UV/vis diffuse reflectance spectroscopy and relativistic density functional theory calculations, revealing increasing optical band gaps with decreasing Se22- content.
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Affiliation(s)
- Daniel Friedrich
- Institut für Anorganische Chemie , Universität Regensburg , Universitätsstraße 31 , 93040 Regensburg , Germany
| | - Marc Schlosser
- Institut für Anorganische Chemie , Universität Regensburg , Universitätsstraße 31 , 93040 Regensburg , Germany
| | - Christian Näther
- Institut für Anorganische Chemie , Universität Regensburg , Universitätsstraße 31 , 93040 Regensburg , Germany
| | - Arno Pfitzner
- Institut für Anorganische Chemie , Universität Regensburg , Universitätsstraße 31 , 93040 Regensburg , Germany
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32
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Affiliation(s)
- Daniel Friedrich
- Institut für Anorganische Chemie; Universität Regensburg; Universitätsstraße 31 93040 Regensburg Germany
| | - Marc Schlosser
- Institut für Anorganische Chemie; Universität Regensburg; Universitätsstraße 31 93040 Regensburg Germany
| | - Arno Pfitzner
- Institut für Anorganische Chemie; Universität Regensburg; Universitätsstraße 31 93040 Regensburg Germany
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33
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Gowers RJ, Farmahini AH, Friedrich D, Sarkisov L. Automated analysis and benchmarking of GCMC simulation programs in application to gas adsorption. Molecular Simulation 2017. [DOI: 10.1080/08927022.2017.1375492] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Richard J. Gowers
- School of Engineering, Institute for Materials and Processes, The University of Edinburgh, Edinburgh, UK
| | - Amir H. Farmahini
- School of Engineering, Institute for Materials and Processes, The University of Edinburgh, Edinburgh, UK
| | - Daniel Friedrich
- School of Engineering, Institute for Energy Systems, The University of Edinburgh, Edinburgh, UK
| | - Lev Sarkisov
- School of Engineering, Institute for Materials and Processes, The University of Edinburgh, Edinburgh, UK
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34
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Veit J, Thierauf J, Egner K, Wiggenhauser P, Friedrich D, Greve J, Schuler P, Hoffmann T, Schramm A. Virtuelle Planung bei der epithetischen Orbitaversorgung. Laryngorhinootologie 2017; 96:e1. [DOI: 10.1055/s-0043-114844] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Johannes Veit
- Klinik für Hals-Nasen-Ohrenheilkunde, Kopf- und Halschirurgie, Universitätsklinikum Ulm
| | - Julia Thierauf
- Klinik für Hals-Nasen-Ohrenheilkunde, Kopf- und Halschirurgie, Universitätsklinikum Ulm
| | | | - Paul Wiggenhauser
- Klinik für Hand-, Plastische- und Ästhetische Chirurgie, Klinikum der Universität München
| | - Daniel Friedrich
- Klinik für Hals-Nasen-Ohrenheilkunde, Kopf- und Halschirurgie, Universitätsklinikum Ulm
| | - Jens Greve
- Klinik für Hals-Nasen-Ohrenheilkunde, Kopf- und Halschirurgie, Universitätsklinikum Ulm
| | - Patrick Schuler
- Klinik für Hals-Nasen-Ohrenheilkunde, Kopf- und Halschirurgie, Universitätsklinikum Ulm
| | - Thomas Hoffmann
- Klinik für Hals-Nasen-Ohrenheilkunde, Kopf- und Halschirurgie, Universitätsklinikum Ulm
| | - Alexander Schramm
- Klinik für Mund-, Kiefer- und Gesichtschirurgie, Universitätsklinikum Ulm
- Klinik für Mund-, Kiefer- und Plastische Gesichtschirurgie, Bundeswehrkranken haus, Ulm
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35
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Veit J, Thierauf J, Egner K, Wiggenhauser P, Friedrich D, Greve J, Schuler P, Hoffmann T, Schramm A. Virtuelle Planung bei der epithetischen Orbitaversorgung. Laryngorhinootologie 2017; 96:374-379. [DOI: 10.1055/s-0042-124508] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
Zusammenfassung
Die optimale epithetische Versorgung von Patienten mit orbitalen Defekten stellt eine Herausforderung dar. Sowohl das Wählen des Implantations-Winkels als auch die Positionierung der Einzelimplantate kann bei inkorrekter Ausführung bei der Abformung, der Herstellung und dem Tragen der Epithese zu Problemen führen.
Wir führten eine virtuelle Planung der enossalen Implantation an einem 3D-CT-Datensatz mit der Software CoDiagnostiX ™(DentalWings, Montréal, Kanada) durch. Mittels 3D-Druckverfahren erfolgte die Herstellung einer plastischen-Insertionsschablone (Med-610™, Stratasys, Rehovot, Israel).
Bei einem 41-jährigen Patienten wurde bei Schrumpfung des Lidapparates nach Enukleation und Radiatio der linken Orbita vor 20 Jahren, nun eine Exenteratio orbitae durchgeführt. Im Anschluss erfolgte das Einbringen von 4 Vistafix-3 Implantaten (Cochlear™ Centennial, USA) mittels 3D-Schablone. Die Abformung und Epithesenanpassung im Verlauf war problemlos möglich und ergab eine sehr gute funktionelle und ästhetische Rehabilitation des Patienten.
Die virtuelle 3D-Planung der knochenverankerten epithetischen Versorgung von Orbitadefekten ist gut durchführbar und führt zu einer optimalen Platzierung der Implantate insbesondere bei posttherapeutisch veränderten anatomischen Verhältnissen der Orbitaregion.
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Affiliation(s)
- Johannes Veit
- Klinik für Hals-Nasen-Ohrenheilkunde, Kopf- und Halschirurgie, Universitätsklinikum Ulm
| | - Julia Thierauf
- Klinik für Hals-Nasen-Ohrenheilkunde, Kopf- und Halschirurgie, Universitätsklinikum Ulm
| | | | - Paul Wiggenhauser
- Klinik für Hand-, Plastische- und Ästhetische Chirurgie, Klinikum der Universität München
| | - Daniel Friedrich
- Klinik für Hals-Nasen-Ohrenheilkunde, Kopf- und Halschirurgie, Universitätsklinikum Ulm
| | - Jens Greve
- Klinik für Hals-Nasen-Ohrenheilkunde, Kopf- und Halschirurgie, Universitätsklinikum Ulm
| | - Patrick Schuler
- Klinik für Hals-Nasen-Ohrenheilkunde, Kopf- und Halschirurgie, Universitätsklinikum Ulm
| | - Thomas Hoffmann
- Klinik für Hals-Nasen-Ohrenheilkunde, Kopf- und Halschirurgie, Universitätsklinikum Ulm
| | - Alexander Schramm
- Klinik für Mund-, Kiefer- und Gesichtschirurgie, Universitätsklinikum Ulm
- Klinik für Mund-, Kiefer- und Plastische Gesichtschirurgie, Bundeswehrkranken haus, Ulm
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36
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Friedrich D, Schlosser M, Weihrich R, Pfitzner A. Polymorphism of CsGaS2– structural characterization of a new two-dimensional polymorph and study of the phase-transition kinetics. Inorg Chem Front 2017. [DOI: 10.1039/c6qi00462h] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Anionic layers in CsGaS2undergo a transition to infinite strands at high temperature and transfer back under pressure.
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Affiliation(s)
- D. Friedrich
- Institut für Anorganische Chemie
- Universität Regensburg
- 93040 Regensburg
- Germany
| | - M. Schlosser
- Institut für Anorganische Chemie
- Universität Regensburg
- 93040 Regensburg
- Germany
| | - R. Weihrich
- Institut für Materials Resource Management
- Universität Augsburg
- 86135 Augsburg
- Germany
| | - A. Pfitzner
- Institut für Anorganische Chemie
- Universität Regensburg
- 93040 Regensburg
- Germany
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37
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Pagel J, Hartz A, Figge J, Gille C, Eschweiler S, Petersen K, Schreiter L, Hammer J, Karsten CM, Friedrich D, Herting E, Göpel W, Rupp J, Härtel C. Regulatory T cell frequencies are increased in preterm infants with clinical early-onset sepsis. Clin Exp Immunol 2016; 185:219-27. [PMID: 27163159 DOI: 10.1111/cei.12810] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2016] [Revised: 04/14/2016] [Accepted: 05/01/2016] [Indexed: 12/16/2022] Open
Abstract
The predisposition of preterm neonates to invasive infection is, as yet, incompletely understood. Regulatory T cells (Tregs ) are potential candidates for the ontogenetic control of immune activation and tissue damage in preterm infants. It was the aim of our study to characterize lymphocyte subsets and in particular CD4(+) CD25(+) forkhead box protein 3 (FoxP3)(+) Tregs in peripheral blood of well-phenotyped preterm infants (n = 117; 23 + 0 - 36 + 6 weeks of gestational age) in the first 3 days of life in comparison to term infants and adults. We demonstrated a negative correlation of Treg frequencies and gestational age. Tregs were increased in blood samples of preterm infants compared to term infants and adults. Notably, we found an increased Treg frequency in preterm infants with clinical early-onset sepsis while cause of preterm delivery, e.g. chorioamnionitis, did not affect Treg frequencies. Our data suggest that Tregs apparently play an important role in maintaining maternal-fetal tolerance, which turns into an increased sepsis risk after preterm delivery. Functional analyses are needed in order to elucidate whether Tregs have potential as future target for diagnostics and therapeutics.
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Affiliation(s)
- J Pagel
- Department of Pediatrics, University Clinic Schleswig Holstein, Campus Lübeck.,Department of Infectious Diseases and Microbiology, University of Lübeck
| | - A Hartz
- Department of Pediatrics, University Clinic Schleswig Holstein, Campus Lübeck.,Institute for Systemic Inflammation Research, University of Lübeck, Lübeck
| | - J Figge
- Institute for Systemic Inflammation Research, University of Lübeck, Lübeck
| | - C Gille
- Department of Neonatology, University of Tübingen, Tübingen, Germany
| | - S Eschweiler
- Institute for Systemic Inflammation Research, University of Lübeck, Lübeck
| | - K Petersen
- Department of Pediatrics, University Clinic Schleswig Holstein, Campus Lübeck
| | - L Schreiter
- Department of Pediatrics, University Clinic Schleswig Holstein, Campus Lübeck.,Institute for Systemic Inflammation Research, University of Lübeck, Lübeck
| | - J Hammer
- Department of Pediatrics, University Clinic Schleswig Holstein, Campus Lübeck
| | - C M Karsten
- Institute for Systemic Inflammation Research, University of Lübeck, Lübeck
| | - D Friedrich
- Department of Infectious Diseases and Microbiology, University of Lübeck
| | - E Herting
- Department of Pediatrics, University Clinic Schleswig Holstein, Campus Lübeck
| | - W Göpel
- Department of Pediatrics, University Clinic Schleswig Holstein, Campus Lübeck
| | - J Rupp
- Department of Infectious Diseases and Microbiology, University of Lübeck
| | - C Härtel
- Department of Pediatrics, University Clinic Schleswig Holstein, Campus Lübeck
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Friedrich D, Luible A. Assessment of standard compliance of Central European plastics-based wall cladding using multi-criteria decision making (MCDM). ACTA ACUST UNITED AC 2016. [DOI: 10.1016/j.csse.2016.03.001] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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39
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Friedrich D, Luible A. Standard-compliant development of a design value for wood–plastic composite cladding: An application-oriented perspective. ACTA ACUST UNITED AC 2016. [DOI: 10.1016/j.csse.2016.01.001] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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40
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Gibson JAA, Mangano E, Shiko E, Greenaway AG, Gromov AV, Lozinska MM, Friedrich D, Campbell EEB, Wright PA, Brandani S. Adsorption Materials and Processes for Carbon Capture from Gas-Fired Power Plants: AMPGas. Ind Eng Chem Res 2016. [DOI: 10.1021/acs.iecr.5b05015] [Citation(s) in RCA: 69] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- J. A. Arran Gibson
- School
of Engineering, The University of Edinburgh, Edinburgh EH9 3FB, United Kingdom
| | - Enzo Mangano
- School
of Engineering, The University of Edinburgh, Edinburgh EH9 3FB, United Kingdom
| | - Elenica Shiko
- School
of Engineering, The University of Edinburgh, Edinburgh EH9 3FB, United Kingdom
| | - Alex G. Greenaway
- EaStCHEM,
School of Chemistry, University of St. Andrews, St. Andrews, Fife KY16 9ST, United Kingdom
| | - Andrei V. Gromov
- EaStCHEM,
School of Chemistry, The University of Edinburgh, Edinburgh EH9 3FJ, United Kingdom
| | - Magdalena M. Lozinska
- EaStCHEM,
School of Chemistry, University of St. Andrews, St. Andrews, Fife KY16 9ST, United Kingdom
| | - Daniel Friedrich
- School
of Engineering, The University of Edinburgh, Edinburgh EH9 3FB, United Kingdom
| | - Eleanor E. B. Campbell
- EaStCHEM,
School of Chemistry, The University of Edinburgh, Edinburgh EH9 3FJ, United Kingdom
- Division
of Quantum Phases and Devices, School of Physics, Konkuk University, 143-701 Seoul, South Korea
| | - Paul A. Wright
- EaStCHEM,
School of Chemistry, University of St. Andrews, St. Andrews, Fife KY16 9ST, United Kingdom
| | - Stefano Brandani
- School
of Engineering, The University of Edinburgh, Edinburgh EH9 3FB, United Kingdom
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Arndt V, Friebe A, Meuser E, Ross K, Agerer F, Schulten-Schulz C, Waak J, Friedrich D, Hennemann H, Vollmer J. Abstract 2646: Targeting cancer stem cell pathways with cell-permeable peptide inhibitors. Cancer Res 2015. [DOI: 10.1158/1538-7445.am2015-2646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
Direct targeting of several important cancer pathways has so far proved challenging, owing to the lack of pathway-specific targets that can be accessed by conventional small molecule drugs or therapeutic antibodies. Nexigen develops and advances peptide-based cancer therapeutics, a new class of drugs that functionally modulate currently undruggable pathways by targeting intracellular protein-protein-interactions.
One of these undruggable pathways, the Wnt signaling cascade, has been identified as a key pathway in cancer stem cells maintenance. Targeting oncongenic Wnt signaling therefore holds great promise for tackling not only tumor growth but also disease relapse, metastasis and drug resistance. Using our proprietary next generation peptide screening system, we could identify cell-permeable peptides that efficiently inhibit the Wnt pathway through a specific interaction with a key component of intracellular signaling. Our most advanced preclinical candidate has nanomolar target affinity and significantly reduces the expression of Wnt target genes in triple-negative MDA-MB-231 breast cancer cells. The further functional analysis of the peptide in various cancer cell lines revealed a dose-dependent inhibition of cell migration, invasion, proliferation, and the cancer stem cell phenotype. The siRNA-mediated knock-down of the target protein or the inhibition of the Wnt pathway recapitulated the inhibitory peptide effect in these assays. Most importantly, we observed a significant suppression of primary tumor growth, tumor cell self-renewal and a reduction of metastatic potential after treatment in different xenograft models.
In summary, our data suggest that our Wnt pathway peptide inhibitor could be a promising new drug candidate for the treatment of cancer stem cells in a broad diversity of cancers.
Citation Format: Verena Arndt, Annette Friebe, Elena Meuser, Katharina Ross, Franziska Agerer, Carmen Schulten-Schulz, Jens Waak, Daniel Friedrich, Hanjo Hennemann, Jörg Vollmer. Targeting cancer stem cell pathways with cell-permeable peptide inhibitors. [abstract]. In: Proceedings of the 106th Annual Meeting of the American Association for Cancer Research; 2015 Apr 18-22; Philadelphia, PA. Philadelphia (PA): AACR; Cancer Res 2015;75(15 Suppl):Abstract nr 2646. doi:10.1158/1538-7445.AM2015-2646
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Affiliation(s)
- Enzo Mangano
- Scottish Carbon Capture and Storage, Institute for Materials and Processes, School of Engineering; The University Edinburgh; The King's Buildings, Mayfield Road Edinburgh EH9 3JL U.K
| | - Daniel Friedrich
- Scottish Carbon Capture and Storage, Institute for Materials and Processes, School of Engineering; The University Edinburgh; The King's Buildings, Mayfield Road Edinburgh EH9 3JL U.K
| | - Stefano Brandani
- Scottish Carbon Capture and Storage, Institute for Materials and Processes, School of Engineering; The University Edinburgh; The King's Buildings, Mayfield Road Edinburgh EH9 3JL U.K
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Friedrich D, Pielnhofer F, Schlosser M, Weihrich R, Pfitzner A. Synthesis, Structural Characterization, and Physical Properties of Cs2Ga2S5, and Redetermination of the Crystal Structure of Cs2S6. Chemistry 2014; 21:1811-7. [DOI: 10.1002/chem.201404923] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2014] [Indexed: 11/11/2022]
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Arndt V, Friebe A, Ross K, Agerer F, Friedrich D, Waak J, Hennemann H, Vollmer J. Drugging the Undruggables - Cell-Permeable Peptide Inhibitors of the WNT Signaling Pathway in Breast Cancer. Ann Oncol 2014. [DOI: 10.1093/annonc/mdu071.10] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Agatsuma K, Friedrich D, Ballmer S, DeSalvo G, Sakata S, Nishida E, Kawamura S. Precise measurement of laser power using an optomechanical system. Opt Express 2014; 22:2013-2030. [PMID: 24515211 DOI: 10.1364/oe.22.002013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
This paper shows a novel method to precisely measure the laser power using an optomechanical system. By measuring a mirror displacement caused by the reflection of an amplitude modulated laser beam, the number of photons in the incident continuous-wave laser can be precisely measured. We have demonstrated this principle by means of a prototype experiment uses a suspended 25 mg mirror as an mechanical oscillator coupled with the radiation pressure and a Michelson interferometer as the displacement sensor. A measurement of the laser power with an uncertainty of less than one percent (1σ) is achievable.
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Oreggioni GD, Friedrich D, Brandani S, Ahn H. Techno-Economic Study of Adsorption Processes for Pre-Combustion Carbon Capture at a Biomass CHP Plant. ACTA ACUST UNITED AC 2014. [DOI: 10.1016/j.egypro.2014.11.709] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Luberti M, Friedrich D, Brandani S, Ahn H. Design of a H2 PSA for cogeneration of ultrapure hydrogen and power at an advanced integrated gasification combined cycle with pre-combustion capture. ADSORPTION 2013. [DOI: 10.1007/s10450-013-9598-0] [Citation(s) in RCA: 64] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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