1
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Liu Y, Zhao J, Yu X, Ren Y, Liu X. Bioinspired phosphorus-free and halogen-free biomass coatings for durable flame retardant modification of regenerated cellulose fibers. Int J Biol Macromol 2024; 259:129252. [PMID: 38199533 DOI: 10.1016/j.ijbiomac.2024.129252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Revised: 12/18/2023] [Accepted: 01/03/2024] [Indexed: 01/12/2024]
Abstract
Inspired by mussel adhesion and intrinsic flame retardant alginate fibers, a biomass flame retardant (PPCA) containing adhesive catechol and sodium carboxylate structure (-COO-Na+) based on biomass amino acids and protocatechualdehyde was designed to prepare flame retardant Lyocell fibers (Lyocell@PPCA@Na). Furthermore, through the substitution and chelation of metal ions by PPCA in the cellulose molecular chain, flame retardant Lyocell fibers chelating copper and iron ions (Lyocell@PPCA@Cu, Lyocell@PPCA@Fe) were prepared. Compared with the original sample, the peak heat release rate (PHRR) and total heat release (THR) for modified Lyocell fibers were significantly reduced. In addition, the modified sample exhibited a certain flame retardant durability. TG-FTIR analysis showed that the release of flammable gaseous substances was inhibited. The introduction of Schiff bases and aromatic structures in PPCA, as well as the decomposition of carboxylic metal salts were beneficial for the formation of char residue containing metal carbonates and metal oxides to play the condensed phase flame retardant effect. This work develops a new idea for the preparation of eco-friendly flame retardant Lyocell fibers without the traditional flame retardant elements such as P, Cl, and Br.
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Affiliation(s)
- Yansong Liu
- School of Textile Science and Engineering, Tiangong University, Tianjin 300387, China
| | - Jieyun Zhao
- School of Textile Science and Engineering, Tiangong University, Tianjin 300387, China
| | - Xi Yu
- School of Textile Science and Engineering, Tiangong University, Tianjin 300387, China
| | - Yuanlin Ren
- School of Textile Science and Engineering, Tiangong University, Tianjin 300387, China; Key Laboratory of Advanced Textile Composite, Ministry of Education, Tiangong University, Tianjin 300387, China.
| | - Xiaohui Liu
- School of Materials Science and Engineering, Tiangong University, Tianjin 300387, China.
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2
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van der Linde C, Ončák M, Cunningham EM, Tang WK, Siu CK, Beyer MK. Surface or Internal Hydration - Does It Really Matter? JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2023; 34:337-354. [PMID: 36744598 PMCID: PMC9983018 DOI: 10.1021/jasms.2c00290] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Revised: 01/26/2023] [Accepted: 01/26/2023] [Indexed: 06/18/2023]
Abstract
The precise location of an ion or electron, whether it is internally solvated or residing on the surface of a water cluster, remains an intriguing question. Subtle differences in the hydrogen bonding network may lead to a preference for one or the other. Here we discuss spectroscopic probes of the structure of gas-phase hydrated ions in combination with quantum chemistry, as well as H/D exchange as a means of structure elucidation. With the help of nanocalorimetry, we look for thermochemical signatures of surface vs internal solvation. Examples of strongly size-dependent reactivity are reviewed which illustrate the influence of surface vs internal solvation on unimolecular rearrangements of the cluster, as well as on the rate and product distribution of ion-molecule reactions.
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Affiliation(s)
- Christian van der Linde
- Institut
für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020Innsbruck, Austria
| | - Milan Ončák
- Institut
für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020Innsbruck, Austria
| | - Ethan M. Cunningham
- Institut
für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020Innsbruck, Austria
| | - Wai Kit Tang
- Institute
of Research Management and Services (IPPP), Research and Innovation
Management Complex, University of Malaya, Kuala Lumpur50603, Malaysia
| | - Chi-Kit Siu
- Department
of Chemistry, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon Tong, Hong Kong SAR, PR China
| | - Martin K. Beyer
- Institut
für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020Innsbruck, Austria
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3
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Shi R, Zhao Z, Huang X, Wang P, Su Y, Sai L, Liang X, Han H, Zhao J. Ground-State Structures of Hydrated Calcium Ion Clusters From Comprehensive Genetic Algorithm Search. Front Chem 2021; 9:637750. [PMID: 34277560 PMCID: PMC8277924 DOI: 10.3389/fchem.2021.637750] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Accepted: 06/02/2021] [Indexed: 12/03/2022] Open
Abstract
We searched the lowest-energy structures of hydrated calcium ion clusters Ca2+(H2O)n (n = 10-18) in the whole potential energy surface by the comprehensive genetic algorithm (CGA). The lowest-energy structures of Ca2+(H2O)10-12 clusters show that Ca2+ is always surrounded by six H2O molecules in the first shell. The number of first-shell water molecules changes from six to eight at n = 12. In the range of n = 12-18, the number of first-shell water molecules fluctuates between seven and eight, meaning that the cluster could pack the water molecules in the outer shell even though the inner shell is not full. Meanwhile, the number of water molecules in the second shell and the total hydrogen bonds increase with an increase in the cluster size. The distance between Ca2+ and the adjacent water molecules increases, while the average adjacent O-O distance decreases as the cluster size increases, indicating that the interaction between Ca2+ and the adjacent water molecules becomes weaker and the interaction between water molecules becomes stronger. The interaction energy and natural bond orbital results show that the interaction between Ca2+ and the water molecules is mainly derived from the interaction between Ca2+ and the adjacent water molecules. The charge transfer from the lone pair electron orbital of adjacent oxygen atoms to the empty orbital of Ca2+ plays a leading role in the interaction between Ca2+ and water molecules.
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Affiliation(s)
- Ruili Shi
- School of Mathematics and Physics, Hebei University of Engineering, Handan, China
- Key Laboratory of Materials Modification by Laser, Ion and Electron Beams, Ministry of Education, Dalian University of Technology, Dalian, China
| | - Zhi Zhao
- School of Mathematics and Physics, Hebei University of Engineering, Handan, China
- Key Laboratory of Materials Modification by Laser, Ion and Electron Beams, Ministry of Education, Dalian University of Technology, Dalian, China
| | - Xiaoming Huang
- School of Ocean Science and Technology, Dalian University of Technology, Panjin Campus, Panjin, China
| | - Pengju Wang
- Key Laboratory of Materials Modification by Laser, Ion and Electron Beams, Ministry of Education, Dalian University of Technology, Dalian, China
| | - Yan Su
- Key Laboratory of Materials Modification by Laser, Ion and Electron Beams, Ministry of Education, Dalian University of Technology, Dalian, China
| | - Linwei Sai
- Department of Mathematics and Physics, Hohai University, Changzhou, China
| | - Xiaoqing Liang
- School of Electronics and Information Engineering, Taizhou University, Taizhou, China
| | - Haiyan Han
- School of Mathematics and Physics, Hebei University of Engineering, Handan, China
| | - Jijun Zhao
- Key Laboratory of Materials Modification by Laser, Ion and Electron Beams, Ministry of Education, Dalian University of Technology, Dalian, China
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4
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Xu HT, Zhang N, Li MR, Zhang FS. Anion effect of Cl−, I−, and F− on counterions condensation within nucleic acid ion atmosphere. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.115899] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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5
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León-Pimentel CI, Saint-Martin H, Ramírez-Solís A. Mg(II) and Ca(II) Microsolvation by Ammonia: Born-Oppenheimer Molecular Dynamics Studies. J Phys Chem A 2021; 125:4565-4577. [PMID: 34029097 DOI: 10.1021/acs.jpca.1c02815] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We report the structural and energetic features of the Mg2+ and Ca2+ cations in ammonia microsolvation environments. Born-Oppenhemier molecular dynamics studies are carried out for [Mg(NH3)n]2+ and [Ca(NH3)n]2+ clusters with n = 2, 3, 4, 6, 8, 20, and 27 at 300 K based on hybrid density functional theory calculations. We determine binding energies per ammonia molecule and the metal cation solvation patterns as a function of the number of molecules. The general trend for Mg2+ is that the Mg-N distances increase as a function of n until the first solvation shell is populated by six ammonia molecules, and then the distances slightly decrease while CN = 6 does not change. For Ca2+, the first solvation shell at room temperature is populated by eight ammonia molecules for clusters with more than one solvation shell, leading to a different structure from that of [Ca(NH3)6]2+ hexamine. The evaporation of NH3 molecules was found at 300 K only for Mg2+ clusters with n ≥ 10; this was not the case for Ca2+ clusters. Vibrational spectra are obtained for all of the clusters, and the evolution of the main features is discussed. EXAFS spectra are also presented for the [Mg(NH3)27(NH3)27]2+ and [Ca(NH3)27]2+ clusters, which yield valuable data to be compared with experimental data in the liquid phase, as previously done for the aqueous solvation of these dications.
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Affiliation(s)
- C I León-Pimentel
- Departamento de Física, Centro de Investigación en Ciencias-IICBA Universidad Autónoma del Estado de Morelos, Cuernavaca, Morelos 62209, México
| | - H Saint-Martin
- Instituto de Ciencias Físicas, Universidad Nacional Autonóna de México, Cuernvaca, Morelos 62210 México
| | - A Ramírez-Solís
- Departamento de Física, Centro de Investigación en Ciencias-IICBA Universidad Autónoma del Estado de Morelos, Cuernavaca, Morelos 62209, México
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6
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Wei ZY, Yang LJ, Gong SY, Xu HG, Xu XL, Gao YQ, Zheng WJ. Comparison of the Microsolvation of CaX 2 (X = F, Cl, Br, I) in Water: Size-Selected Anion Photoelectron Spectroscopy and Theoretical Calculations. J Phys Chem A 2021; 125:3288-3306. [PMID: 33872010 DOI: 10.1021/acs.jpca.1c00573] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
To understand the microsolvation of alkaline-earth dihalides in water and provide information about the dependence of solvation processes on different halides, we investigated CaBr2(H2O)n-, CaI2(H2O)n-, and CaF2(H2O)n- (n = 0-6) clusters using size-selected anion photoelectron spectroscopy and conducted theoretical calculations on these clusters and their neutrals. The results are compared with those of CaCl2(H2O)n-/0 clusters reported previously. It is found that the vertical detachment energies (VDEs) of CaCl2(H2O)n-, CaBr2(H2O)n-, and CaI2(H2O)n- show a similar trend with increasing cluster size, while the VDEs of CaF2(H2O)n- show a different trend. The VDEs of CaF2(H2O)n- are much lower than those of CaCl2(H2O)n-, CaBr2(H2O)n-, and CaI2(H2O)n-. A detailed probing of the structures shows that a significant increase of the Ca-X distance (separation of Ca2+-X- ion pair) in CaCl2(H2O)n-/0, CaBr2(H2O)n-/0, and CaI2(H2O)n-/0 clusters occurred at about n = 5. However, for CaF2(H2O)n-/0, no abrupt change of the Ca-F distance with the increasing cluster size has been observed. In CaCl2(H2O)6-/0, CaBr2(H2O)6-/0, and CaI2(H2O)6-/0, the Ca atom coordinates directly with 5 H2O molecules. However, in CaF2(H2O)n-/0, the Ca atom coordinates directly with only 2 or 3 H2O molecules. The similarity or differences in the structures and coordination numbers are consistent with the fact that CaCl2, CaBr2, and CaI2 have similar solubility, while CaF2 has much lower solubility.
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Affiliation(s)
- Zhi-You Wei
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Li-Jiang Yang
- Beijing National Laboratory for Molecular Science, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Shi-Yan Gong
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Hong-Guang Xu
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xi-Ling Xu
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yi Qin Gao
- Beijing National Laboratory for Molecular Science, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China.,Biomedical Pioneering Innovation Center, Peking University, Beijing 100871, China
| | - Wei-Jun Zheng
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.,University of Chinese Academy of Sciences, Beijing 100049, China
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7
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Assessing the Intrinsic Strengths of Ion–Solvent and Solvent–Solvent Interactions for Hydrated Mg2+ Clusters. INORGANICS 2021. [DOI: 10.3390/inorganics9050031] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Information resulting from a comprehensive investigation into the intrinsic strengths of hydrated divalent magnesium clusters is useful for elucidating the role of aqueous solvents on the Mg2+ ion, which can be related to those in bulk aqueous solution. However, the intrinsic Mg–O and intermolecular hydrogen bond interactions of hydrated magnesium ion clusters have yet to be quantitatively measured. In this work, we investigated a set of 17 hydrated divalent magnesium clusters by means of local vibrational mode force constants calculated at the ωB97X-D/6-311++G(d,p) level of theory, where the nature of the ion–solvent and solvent–solvent interactions were interpreted from topological electron density analysis and natural population analysis. We found the intrinsic strength of inner shell Mg–O interactions for [Mg(H2O)n]2+ (n = 1–6) clusters to relate to the electron density at the bond critical point in Mg–O bonds. From the application of a secondary hydration shell to [Mg(H2O)n]2+ (n = 5–6) clusters, stronger Mg–O interactions were observed to correspond to larger instances of charge transfer between the lp(O) orbitals of the inner hydration shell and the unfilled valence shell of Mg. As the charge transfer between water molecules of the first and second solvent shell increased, so did the strength of their intermolecular hydrogen bonds (HBs). Cumulative local vibrational mode force constants of explicitly solvated Mg2+, having an outer hydration shell, reveal a CN of 5, rather than a CN of 6, to yield slightly more stable configurations in some instances. However, the cumulative local mode stretching force constants of implicitly solvated Mg2+ show the six-coordinated cluster to be the most stable. These results show that such intrinsic bond strength measures for Mg–O and HBs offer an effective way for determining the coordination number of hydrated magnesium ion clusters.
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8
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Marks JH, Miliordos E, Duncan MA. Infrared spectroscopy of RG-Co +(H 2O) complexes (RG = Ar, Ne, He): The role of rare gas "tag" atoms. J Chem Phys 2021; 154:064306. [PMID: 33588546 DOI: 10.1063/5.0041069] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
RGn-Co+(H2O) cation complexes (RG = Ar, Ne, He) are generated in a supersonic expansion by pulsed laser vaporization. Complexes are mass-selected using a time-of-flight spectrometer and studied with infrared laser photodissociation spectroscopy, measuring the respective mass channels corresponding to the elimination of the rare gas "tag" atom. Spectral patterns and theory indicate that the structures of the ions with a single rare gas atom have this bound to the cobalt cation opposite the water moiety in a near-C2v arrangement. The O-H stretch vibrations of the complex are shifted compared to those of water because of the metal cation charge-transfer interaction; these frequencies also vary systematically with the rare gas atom attached. The efficiencies of photodissociation also vary with the rare gas atoms because of their widely different binding energies to the cobalt cation. The spectrum of the argon complex could only be measured when at least three argon atoms were attached. In the case of the helium complex, the low binding energy allows the spectra to be measured for the low-frequency H-O-H scissors bending mode and for the O-D stretches of the deuterated analog. The partially resolved rotational structure for the antisymmetric O-H and O-D stretches reveals the temperature of these complexes (6 K) and establishes the electronic ground state. The helium complex has the same 3B1 ground state as the tag-free complex studied previously by Metz and co-workers ["Dissociation energy and electronic and vibrational spectroscopy of Co+(H2O) and its isotopomers," J. Phys. Chem. A 117, 1254 (2013)], but the A rotational constant is contaminated by vibrational averaging from the bending motion of the helium.
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Affiliation(s)
- Joshua H Marks
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Evangelos Miliordos
- Department of Chemistry and Biochemistry, Auburn University, Auburn, Alabama 36849, USA
| | - Michael A Duncan
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, USA
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9
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Wei ZY, Yang LJ, Xu HG, Farooq U, Xu XL, Gao YQ, Zheng WJ. Hydration processes of barium chloride: Size-selected anion photoelectron spectroscopy and theoretical calculations of BaCl 2-water clusters. J Chem Phys 2020; 153:134301. [PMID: 33032412 DOI: 10.1063/5.0021991] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In order to understand the hydration processes of BaCl2, we investigated BaCl2(H2O)n - (n = 0-5) clusters using size-selected anion photoelectron spectroscopy and theoretical calculations. The structures of neutral BaCl2(H2O)n clusters up to n = 8 were also investigated by theoretical calculations. It is found that in BaCl2(H2O)n -/0, the Ba-Cl distances increase very slowly with the cluster size. The hydration process is not able to induce the breaking of a Ba-Cl bond in the cluster size range (n = 0-8) studied in this work. In small BaCl2(H2O)n clusters with n ≤ 5, the Ba atom has a coordination number of n + 2; however, in BaCl2(H2O)6-8 clusters, the Ba atom coordinates with two Cl atoms and (n - 1) water molecules, and it has a coordination number of n + 1. Unlike the previously studied MgCl2(H2O)n - and CaCl2(H2O)n -, negative charge-transfer-to-solvent behavior has not been observed for BaCl2(H2O)n -, and the excess electron of BaCl2(H2O)n - is mainly localized on the Ba atom rather on the water molecules. No observation of Ba2+-Cl- separation in current work is consistent with the lower solubility of BaCl2 compared to MgCl2 and CaCl2. Considering the BaCl2/H2O mole ratio in the saturated solution, one would expect that about 20-30 H2O molecules are needed to break the first Ba-Cl bond in BaCl2.
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Affiliation(s)
- Zhi-You Wei
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Li-Jiang Yang
- Beijing National Laboratory for Molecular Science, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Hong-Guang Xu
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Umar Farooq
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Xi-Ling Xu
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Yi-Qin Gao
- Beijing National Laboratory for Molecular Science, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Wei-Jun Zheng
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory of Molecular Reaction Dynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
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10
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Carnegie PD, Marks JH, Brathwaite AD, Ward TB, Duncan MA. Microsolvation in V +(H 2O) n Clusters Studied with Selected-Ion Infrared Spectroscopy. J Phys Chem A 2020; 124:1093-1103. [PMID: 31961153 DOI: 10.1021/acs.jpca.9b11275] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Gas-phase ion-molecule clusters of the form V+(H2O)n (n = 1-30) are produced by laser vaporization in a supersonic expansion. These ions are analyzed and mass-selected with a time-of-flight mass spectrometer and investigated with infrared laser photodissociation spectroscopy. The small clusters (n ≤ 7) are studied with argon tagging, while the larger clusters are studied via the elimination of water molecules. The vibrational spectra for the small clusters include only free O-H stretching vibrations, while larger clusters exhibit redshifted hydrogen bonding vibrations. The spectral patterns reveal that the coordination around V+ ions is completed with four water molecules. A symmetric square-planar structure forms for the n = 4 ion, and this becomes the core ion in larger structures. Clusters up to n = 8 have mostly two-dimensional structures, but hydrogen bonding networks evolve to three-dimensional structures in larger clusters. The free O-H vibration of acceptor-acceptor-donor (AAD)-coordinated surface molecules converges to a frequency near that of bulk water by the cluster size of n = 30. However, the splitting of this vibration for AAD- versus AD-coordinated molecules is still different compared to other singly charged or doubly charged cation-water clusters. This indicates that cation identity and charge-site location in the cluster can produce discernable spectral differences for clusters in this size range.
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Affiliation(s)
- Prosser D Carnegie
- Department of Chemistry , University of Georgia , Athens , Georgia 30602 , United States
| | - Joshua H Marks
- Department of Chemistry , University of Georgia , Athens , Georgia 30602 , United States
| | - Antonio D Brathwaite
- Department of Chemistry , Emory University , Atlanta , Georgia 30322 , United States
| | - Timothy B Ward
- Department of Chemistry , University of Georgia , Athens , Georgia 30602 , United States
| | - Michael A Duncan
- Department of Chemistry , University of Georgia , Athens , Georgia 30602 , United States
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11
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12
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Long MP, Alland S, Martin ME, Isborn CM. Molecular dynamics simulations of alkaline earth metal ions binding to DNA reveal ion size and hydration effects. Phys Chem Chem Phys 2020; 22:5584-5596. [DOI: 10.1039/c9cp06844a] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Classical molecular dynamics simulations reveal size-dependent trends of alkaline earth metal ions binding to DNA are due to ion size and hydration behavior.
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Affiliation(s)
| | - Serra Alland
- Department of Chemistry and Biochemistry
- University of Central Arkansas
- Arkansas 72035
- USA
| | - Madison E. Martin
- Department of Chemistry and Biochemistry
- University of Central Arkansas
- Arkansas 72035
- USA
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13
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Herburger A, Ončák M, Siu C, Demissie EG, Heller J, Tang WK, Beyer MK. Infrared Spectroscopy of Size-Selected Hydrated Carbon Dioxide Radical Anions CO 2 .- (H 2 O) n (n=2-61) in the C-O Stretch Region. Chemistry 2019; 25:10165-10171. [PMID: 31132183 PMCID: PMC6771497 DOI: 10.1002/chem.201901650] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2019] [Indexed: 11/08/2022]
Abstract
Understanding the intrinsic properties of the hydrated carbon dioxide radical anions CO2 .- (H2 O)n is relevant for electrochemical carbon dioxide functionalization. CO2 .- (H2 O)n (n=2-61) is investigated by using infrared action spectroscopy in the 1150-2220 cm-1 region in an ICR (ion cyclotron resonance) cell cooled to T=80 K. The spectra show an absorption band around 1280 cm-1 , which is assigned to the symmetric C-O stretching vibration νs . It blueshifts with increasing cluster size, reaching the bulk value, within the experimental linewidth, for n=20. The antisymmetric C-O vibration νas is strongly coupled with the water bending mode ν2 , causing a broad feature at approximately 1650 cm-1 . For larger clusters, an additional broad and weak band appears above 1900 cm-1 similar to bulk water, which is assigned to a combination band of water bending and libration modes. Quantum chemical calculations provide insight into the interaction of CO2 .- with the hydrogen-bonding network.
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Affiliation(s)
- Andreas Herburger
- Institut für Ionenphysik und Angewandte PhysikUniversität InnsbruckTechnikerstraße 256020InnsbruckAustria
| | - Milan Ončák
- Institut für Ionenphysik und Angewandte PhysikUniversität InnsbruckTechnikerstraße 256020InnsbruckAustria
| | - Chi‐Kit Siu
- Department of ChemistryCity University of Hong Kong83 Tat Chee AvenueKowloon Tong, Hong Kong SARP. R. China
| | - Ephrem G. Demissie
- Department of ChemistryCity University of Hong Kong83 Tat Chee AvenueKowloon Tong, Hong Kong SARP. R. China
| | - Jakob Heller
- Institut für Ionenphysik und Angewandte PhysikUniversität InnsbruckTechnikerstraße 256020InnsbruckAustria
| | - Wai Kit Tang
- Department of ChemistryCity University of Hong Kong83 Tat Chee AvenueKowloon Tong, Hong Kong SARP. R. China
| | - Martin K. Beyer
- Institut für Ionenphysik und Angewandte PhysikUniversität InnsbruckTechnikerstraße 256020InnsbruckAustria
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14
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Denton JK, Kelleher PJ, Johnson MA, Baer MD, Kathmann SM, Mundy CJ, Wellen Rudd BA, Allen HC, Choi TH, Jordan KD. Molecular-level origin of the carboxylate head group response to divalent metal ion complexation at the air-water interface. Proc Natl Acad Sci U S A 2019; 116:14874-14880. [PMID: 31278149 PMCID: PMC6660762 DOI: 10.1073/pnas.1818600116] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
We exploit gas-phase cluster ion techniques to provide insight into the local interactions underlying divalent metal ion-driven changes in the spectra of carboxylic acids at the air-water interface. This information clarifies the experimental findings that the CO stretching bands of long-chain acids appear at very similar energies when the head group is deprotonated by high subphase pH or exposed to relatively high concentrations of Ca2+ metal ions. To this end, we report the evolution of the vibrational spectra of size-selected [Ca2+·RCO2-]+·(H2O) n=0to12 and RCO2-·(H2O) n=0to14 cluster ions toward the features observed at the air-water interface. Surprisingly, not only does stepwise hydration of the RCO2- anion and the [Ca2+·RCO2-]+ contact ion pair yield solvatochromic responses in opposite directions, but in both cases, the responses of the 2 (symmetric and asymmetric stretching) CO bands to hydration are opposite to each other. The result is that both CO bands evolve toward their interfacial asymptotes from opposite directions. Simulations of the [Ca2+·RCO2-]+·(H2O) n clusters indicate that the metal ion remains directly bound to the head group in a contact ion pair motif as the asymmetric CO stretch converges at the interfacial value by n = 12. This establishes that direct metal complexation or deprotonation can account for the interfacial behavior. We discuss these effects in the context of a model that invokes the water network-dependent local electric field along the C-C bond that connects the head group to the hydrocarbon tail as the key microscopic parameter that is correlated with the observed trends.
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Affiliation(s)
- Joanna K Denton
- Sterling Chemistry Laboratory, Yale University, New Haven, CT 06520
| | | | - Mark A Johnson
- Sterling Chemistry Laboratory, Yale University, New Haven, CT 06520;
| | - Marcel D Baer
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352
| | - Shawn M Kathmann
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352
| | - Christopher J Mundy
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352
- Department of Chemical Engineering, University of Washington, Seattle, WA 98195
| | - Bethany A Wellen Rudd
- Department of Chemistry & Biochemistry, The Ohio State University, Columbus, OH 43210
- Department of Chemistry, Ohio Wesleyan University, Delaware, OH 43015
| | - Heather C Allen
- Department of Chemistry & Biochemistry, The Ohio State University, Columbus, OH 43210
| | - Tae Hoon Choi
- Department of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260
| | - Kenneth D Jordan
- Department of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260
- Department of Chemical and Petroleum Engineering, University of Pittsburgh, Pittsburgh, PA 15260
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15
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Taxer T, Ončák M, Barwa E, van der Linde C, Beyer MK. Electronic spectroscopy and nanocalorimetry of hydrated magnesium ions [Mg(H 2O) n] +, n = 20-70: spontaneous formation of a hydrated electron? Faraday Discuss 2019; 217:584-600. [PMID: 30994636 PMCID: PMC6677030 DOI: 10.1039/c8fd00204e] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2018] [Accepted: 12/07/2018] [Indexed: 11/26/2022]
Abstract
Hydrated singly charged magnesium ions [Mg(H2O)n]+ are thought to consist of an Mg2+ ion and a hydrated electron for n > 15. This idea is based on mass spectra, which exhibit a transition from [MgOH(H2O)n-1]+ to [Mg(H2O)n]+ around n = 15-22, black-body infrared radiative dissociation, and quantum chemical calculations. Here, we present photodissociation spectra of size-selected [Mg(H2O)n]+ in the range of n = 20-70 measured for photon energies of 1.0-5.0 eV. The spectra exhibit a broad absorption from 1.4 to 3.2 eV, with two local maxima around 1.7-1.8 eV and 2.1-2.5 eV, depending on cluster size. The spectra shift slowly from n = 20 to n = 50, but no significant change is observed for n = 50-70. Quantum chemical modeling of the spectra yields several candidates for the observed absorptions, including five- and six-fold coordinated Mg2+ with a hydrated electron in its immediate vicinity, as well as a solvent-separated Mg2+/e- pair. The photochemical behavior resembles that of the hydrated electron, with barrierless interconversion into the ground state following the excitation.
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Affiliation(s)
- Thomas Taxer
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
| | - Milan Ončák
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
| | - Erik Barwa
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
| | - Christian van der Linde
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
| | - Martin K Beyer
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
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16
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Gupta PK, Schienbein P, Daru J, Marx D. Terahertz Spectra of Microsolvated Ions: Do They Reveal Bulk Solvation Properties? J Phys Chem Lett 2019; 10:393-398. [PMID: 30607961 DOI: 10.1021/acs.jpclett.8b03188] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Complementing mid-infrared (mid-IR) spectroscopy mainly in the OH stretching region, liquid-state far-IR spectroscopy is successful in elucidating the properties of aqueous solutions by providing direct access to the hallmark of H-bonding at terahertz (THz) frequencies, namely, the H-bond network peak of water at roughly 200 cm-1 and its modifications in the hydration shells around solutes. Here, the idea is scrutinized whether ion hydration can be understood by studying the THz regime of "small" ion-water clusters in the gas phase as a function of size with subsequent extrapolation to the bulk limit. Our ab initio simulations of Na+(H2O) n clusters followed by rigorous decomposition of their THz response demonstrate that the 200 cm-1 network peak is suppressed even at n = 20 in the gas phase, yet it emerges when transferring ion-water complexes as small as n = 7 out of the liquid into vacuum. The underlying physical reason is not missing electronic polarization or charge-transfer effects in the gas phase, but rather the distinctly different structural dynamics of finite ion-water clusters in the gas phase compared to ion-water complexes of the same size in the liquid phase.
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Affiliation(s)
- Prashant Kumar Gupta
- Lehrstuhl für Theoretische Chemie , Ruhr-Universität Bochum , 44780 Bochum , Germany
| | - Philipp Schienbein
- Lehrstuhl für Theoretische Chemie , Ruhr-Universität Bochum , 44780 Bochum , Germany
| | - Janos Daru
- Lehrstuhl für Theoretische Chemie , Ruhr-Universität Bochum , 44780 Bochum , Germany
| | - Dominik Marx
- Lehrstuhl für Theoretische Chemie , Ruhr-Universität Bochum , 44780 Bochum , Germany
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17
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León-Pimentel CI, Amaro-Estrada JI, Hernández-Cobos J, Saint-Martin H, Ramírez-Solís A. Aqueous solvation of Mg(ii) and Ca(ii): A Born-Oppenheimer molecular dynamics study of microhydrated gas phase clusters. J Chem Phys 2018; 148:144307. [PMID: 29655339 DOI: 10.1063/1.5021348] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The hydration features of [Mg(H2O)n]2+ and [Ca(H2O)n]2+ clusters with n = 3-6, 8, 18, and 27 were studied by means of Born-Oppenheimer molecular dynamics simulations at the B3LYP/6-31+G** level of theory. For both ions, it is energetically more favorable to have all water molecules in the first hydration shell when n ≤ 6, but stable lower coordination average structures with one water molecule not directly interacting with the ion were found for Mg2+ at room temperature, showing signatures of proton transfer events for the smaller cation but not for the larger one. A more rigid octahedral-type structure for Mg2+ than for Ca2+ was observed in all simulations, with no exchange of water molecules to the second hydration shell. Significant thermal effects on the average structure of clusters were found: while static optimizations lead to compact, spherically symmetric hydration geometries, the effects introduced by finite-temperature dynamics yield more prolate configurations. The calculated vibrational spectra are in agreement with infrared spectroscopy results. Previous studies proposed an increase in the coordination number (CN) from six to eight water molecules for [Ca(H2O)n]2+ clusters when n ≥ 12; however, in agreement with recent measurements of binding energies, no transition to a larger CN was found when n > 8. Moreover, the excellent agreement found between the calculated extended X-ray absorption fine structure spectroscopy spectra for the larger cluster and the experimental data of the aqueous solution supports a CN of six for Ca2+.
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Affiliation(s)
- C I León-Pimentel
- Instituto de Ciencias Físicas, Universidad Autónoma de México, Apdo. Postal 48-3, Cuernavaca, Morelos 62251, Mexico
| | - J I Amaro-Estrada
- Instituto de Ciencias Físicas, Universidad Autónoma de México, Apdo. Postal 48-3, Cuernavaca, Morelos 62251, Mexico
| | - J Hernández-Cobos
- Instituto de Ciencias Físicas, Universidad Autónoma de México, Apdo. Postal 48-3, Cuernavaca, Morelos 62251, Mexico
| | - H Saint-Martin
- Instituto de Ciencias Físicas, Universidad Autónoma de México, Apdo. Postal 48-3, Cuernavaca, Morelos 62251, Mexico
| | - A Ramírez-Solís
- Departamento de Física, Centro de Investigación en Ciencias, IICBA, Universidad Autónoma del Estado de Morelos, Cuernavaca, Morelos 62209, Mexico
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18
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Thaunay F, Jana C, Clavaguéra C, Ohanessian G. Strategy for Modeling the Infrared Spectra of Ion-Containing Water Drops. J Phys Chem A 2018; 122:832-842. [PMID: 29266957 DOI: 10.1021/acs.jpca.7b10554] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Hydrated ions are ubiquitous in environmental and biological media. Understanding the perturbation exerted by an ion on the water hydrogen bond network is possible in the nanodrop regime by recording vibrational spectra in the O-H bond stretching region. This has been achieved experimentally in recent years by forming gaseous ions containing tens to hundreds of water molecules and recording their infrared photodissociation spectra. In this paper, we demonstrate the capabilities of a modeling strategy based on an extension of the AMOEBA polarizable force field to implement water atomic charge fluctuations along with those of intramolecular structure along the dynamics. This supplementary flexibility of nonbonded interactions improves the description of the hydrogen bond network and, therefore, the spectroscopic response. Finite temperature IR spectra are obtained from molecular dynamics simulations by computing the Fourier transform of the dipole moment autocorrelation function. Simulations of 1-2 ns are required for extensive sampling in order to reproduce the experimental spectra. Furthermore, bands are assigned with the driven molecular dynamics approach. This method package is shown to compare successfully with experimental spectra for 11 ions in water drops containing 36-100 water molecules. In particular, band frequency shifts of the free O-H stretching modes at the cluster surface are well reproduced as a function of both ion charge and drop size.
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Affiliation(s)
- Florian Thaunay
- LCM, CNRS, Ecole Polytechnique, Université Paris Saclay , 91128 Palaiseau, France
| | - Chandramohan Jana
- LCM, CNRS, Ecole Polytechnique, Université Paris Saclay , 91128 Palaiseau, France
| | - Carine Clavaguéra
- Laboratoire de Chimie Physique, Université Paris Sud - CNRS, Université Paris Saclay , 15, avenue Jean Perrin, 91405 Orsay Cedex, France
| | - Gilles Ohanessian
- LCM, CNRS, Ecole Polytechnique, Université Paris Saclay , 91128 Palaiseau, France
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19
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Ramírez-Solís A, Amaro-Estrada JI, León-Pimentel CI, Hernández-Cobos J, Garrido-Hoyos SE, Saint-Martin H. On the aqueous solvation of AsO(OH)3vs. As(OH)3. Born–Oppenheimer molecular dynamics density functional theory cluster studies. Phys Chem Chem Phys 2018; 20:16568-16578. [DOI: 10.1039/c8cp01673a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
BOMD simulations were used to reveal the hydration features of As(OH)3 and (for the first time) AsO(OH)3 in aqueous solution.
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Affiliation(s)
- A. Ramírez-Solís
- Depto. de Física
- Centro de Investigación en Ciencias, IICBA
- Universidad Autónoma del Estado de Morelos
- Cuernavaca
- Mexico
| | - J. I. Amaro-Estrada
- Instituto de Ciencias Físicas
- Universidad Nacional Autónoma de México
- Cuernavaca
- Mexico
| | - C. I. León-Pimentel
- Instituto de Ciencias Físicas
- Universidad Nacional Autónoma de México
- Cuernavaca
- Mexico
| | - J. Hernández-Cobos
- Instituto de Ciencias Físicas
- Universidad Nacional Autónoma de México
- Cuernavaca
- Mexico
| | | | - H. Saint-Martin
- Instituto de Ciencias Físicas
- Universidad Nacional Autónoma de México
- Cuernavaca
- Mexico
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20
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Martí J. Free-energy surfaces of ionic adsorption in cholesterol-free and cholesterol-rich phospholipid membranes. MOLECULAR SIMULATION 2017. [DOI: 10.1080/08927022.2017.1391383] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Jordi Martí
- Department of Physics, Technical University of Catalonia-Barcelona Tech, Barcelona, Spain
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21
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Ward TB, Miliordos E, Carnegie PD, Xantheas SS, Duncan MA. Ortho-para interconversion in cation-water complexes: The case of V+(H2O) and Nb+(H2O) clusters. J Chem Phys 2017; 146:224305. [DOI: 10.1063/1.4984826] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- T. B. Ward
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556, USA
| | - E. Miliordos
- Advanced Computing, Mathematics and Data Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K1-83, Richland, Washington 99352, USA
| | - P. D. Carnegie
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556, USA
| | - S. S. Xantheas
- Advanced Computing, Mathematics and Data Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K1-83, Richland, Washington 99352, USA
| | - M. A. Duncan
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556, USA
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22
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Cooper RJ, O'Brien JT, Chang TM, Williams ER. Structural and electrostatic effects at the surfaces of size- and charge-selected aqueous nanodrops. Chem Sci 2017; 8:5201-5213. [PMID: 28970907 PMCID: PMC5618692 DOI: 10.1039/c7sc00481h] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2017] [Accepted: 05/17/2017] [Indexed: 11/23/2022] Open
Abstract
The effects of ion charge, polarity and size on the surface morphology of size-selected aqueous nanodrops containing a single ion and up to 550 water molecules are investigated with infrared photodissociation (IRPD) spectroscopy and theory.
The effects of ion charge, polarity and size on the surface morphology of size-selected aqueous nanodrops containing a single ion and up to 550 water molecules are investigated with infrared photodissociation (IRPD) spectroscopy and theory. IRPD spectra of M(H2O)n where M = La3+, Ca2+, Na+, Li+, I–, SO42– and supporting molecular dynamics simulations indicate that strong interactions between multiply charged ions and water molecules can disrupt optimal hydrogen bonding (H-bonding) at the nanodrop surface. The IRPD spectra also reveal that “free” OH stretching frequencies of surface-bound water molecules are highly sensitive to the ion's identity and the OH bond's local H-bond environment. The measured frequency shifts are qualitatively reproduced by a computationally inexpensive point-charge model that shows the frequency shifts are consistent with a Stark shift from the ion's electric field. For multiply charged cations, pronounced Stark shifting is observed for clusters containing ∼100 or fewer water molecules. This is attributed to ion-induced solvent patterning that extends to the nanodrop surface, and serves as a spectroscopic signature for a cation's ability to influence the H-bond network of water located remotely from the ion. The Stark shifts measured for the larger nanodrops are extrapolated to infinite dilution to obtain the free OH stretching frequency of a surface-bound water molecule at the bulk air–water interface (3696.5–3701.0 cm–1), well within the relatively wide range of values obtained from SFG measurements. These cluster measurements also indicate that surface curvature effects can influence the free OH stretching frequency, and that even nanodrops without an ion have a surface potential that depends on cluster size.
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Affiliation(s)
- Richard J Cooper
- Department of Chemistry , University of California , Berkeley , California 94720-1460 , USA . ; Tel: +1 510 643 7161
| | - Jeremy T O'Brien
- Department of Chemistry , University of California , Berkeley , California 94720-1460 , USA . ; Tel: +1 510 643 7161
| | - Terrence M Chang
- Department of Chemistry , University of California , Berkeley , California 94720-1460 , USA . ; Tel: +1 510 643 7161
| | - Evan R Williams
- Department of Chemistry , University of California , Berkeley , California 94720-1460 , USA . ; Tel: +1 510 643 7161
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23
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DePalma JW, Kelleher PJ, Tavares LC, Johnson MA. Coordination-Dependent Spectroscopic Signatures of Divalent Metal Ion Binding to Carboxylate Head Groups: H 2- and He-Tagged Vibrational Spectra of M 2+·RCO 2¯ (M = Mg and Ca, R = -CD 3, -CD 2CD 3) Complexes. J Phys Chem Lett 2017; 8:484-488. [PMID: 28060510 DOI: 10.1021/acs.jpclett.6b02964] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
We explore the intramolecular distortions present in divalent metal ion-carboxylate ion pairs using vibrational spectroscopy of the cryogenically cooled, mass-selected species isolated in the gas phase. The spectral signatures of the C-O stretching modes are identified using the perdeutero isotopologues of the acetate and propionate anions to avoid congestion arising from the CH2 fundamentals. Both Ca2+ and Mg2+ are observed to bind in a symmetrical, so-called "bidentate" arrangement to the -CO2¯ group. The very strong deformations of the head groups displayed by the binary complexes dramatically relax when either neutral water molecules or counterions are attached to the Mg2+RCO2¯ cation. These results emphasize the critical role that local coordination plays when using the RCO2¯ bands to deduce the metal ion complexation motif in condensed media.
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Affiliation(s)
- Joseph W DePalma
- Sterling Chemistry Laboratory, Department of Chemistry, Yale University , 225 Prospect Street, New Haven, Connecticut 06520, United States
| | - Patrick J Kelleher
- Sterling Chemistry Laboratory, Department of Chemistry, Yale University , 225 Prospect Street, New Haven, Connecticut 06520, United States
| | - Laís C Tavares
- Instituto de Química, Universidade de São Paulo , Caixa Postal 26077, São Paulo, CEP 05508-900, Brazil
| | - Mark A Johnson
- Sterling Chemistry Laboratory, Department of Chemistry, Yale University , 225 Prospect Street, New Haven, Connecticut 06520, United States
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24
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Feng G, Liu CW, Zeng Z, Hou GL, Xu HG, Zheng WJ. Initial hydration processes of magnesium chloride: size-selected anion photoelectron spectroscopy and ab initio calculations. Phys Chem Chem Phys 2017; 19:15562-15569. [DOI: 10.1039/c7cp02965a] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Separation of Cl−–Mg2+ ion pairs starts at n = 4 in MgCl2(H2O)n− anions and at n = 7 in neutral MgCl2(H2O)n.
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Affiliation(s)
- Gang Feng
- Beijing National Laboratory for Molecular Sciences
- State Key Laboratory of Molecular Reaction Dynamics
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing 100190
| | - Cheng-Wen Liu
- Beijing National Laboratory for Molecular Sciences
- College of Chemistry and Molecular Engineering
- Peking University
- Beijing 100871
- China
| | - Zhen Zeng
- Beijing National Laboratory for Molecular Sciences
- State Key Laboratory of Molecular Reaction Dynamics
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing 100190
| | - Gao-Lei Hou
- Beijing National Laboratory for Molecular Sciences
- State Key Laboratory of Molecular Reaction Dynamics
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing 100190
| | - Hong-Guang Xu
- Beijing National Laboratory for Molecular Sciences
- State Key Laboratory of Molecular Reaction Dynamics
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing 100190
| | - Wei-Jun Zheng
- Beijing National Laboratory for Molecular Sciences
- State Key Laboratory of Molecular Reaction Dynamics
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing 100190
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25
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Ward T, Carnegie P, Duncan M. Infrared spectroscopy of the Ti(H2O)Ar+ ion–molecule complex: Electronic state switching induced by argon. Chem Phys Lett 2016. [DOI: 10.1016/j.cplett.2016.04.065] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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26
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Wolke CT, Fournier JA, Miliordos E, Kathmann SM, Xantheas SS, Johnson MA. Isotopomer-selective spectra of a single intact H2O molecule in the Cs+(D2O)5H2O isotopologue: Going beyond pattern recognition to harvest the structural information encoded in vibrational spectra. J Chem Phys 2016; 144:074305. [DOI: 10.1063/1.4941285] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Conrad T. Wolke
- Sterling Chemistry Laboratory, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, USA
| | - Joseph A. Fournier
- Sterling Chemistry Laboratory, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, USA
| | - Evangelos Miliordos
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, Richland, Washington 99352, USA
| | - Shawn M. Kathmann
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, Richland, Washington 99352, USA
| | - Sotiris S. Xantheas
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, Richland, Washington 99352, USA
| | - Mark A. Johnson
- Sterling Chemistry Laboratory, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, USA
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27
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Characterizing Ni(II) hydration in aqueous solution using DFT and EXAFS. J Mol Model 2015; 22:2. [DOI: 10.1007/s00894-015-2871-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2015] [Accepted: 11/18/2015] [Indexed: 10/22/2022]
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28
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Pearson WL, Contreras C, Powell D, Berden G, Oomens J, Bendiak B, Eyler JR. Differentiation of Rubidiated Methyl-d-Glycoside Stereoisomers by Infrared Multiple-Photon Dissociation Spectroscopy in the O–H and C–H Stretching Regions. J Phys Chem B 2015; 119:12970-81. [DOI: 10.1021/acs.jpcb.5b06563] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Wright L. Pearson
- Department
of Chemistry, University of Florida, Gainesville, Florida 32611-7200, United States
| | - Cesar Contreras
- Department
of Chemistry, University of Florida, Gainesville, Florida 32611-7200, United States
| | - David Powell
- Department
of Chemistry, University of Florida, Gainesville, Florida 32611-7200, United States
| | - Giel Berden
- Radboud University, Institute for Molecules and
Materials, FELIX Laboratory, Toernooiveld 7c, 6525 ED Nijmegen, The Netherlands
| | - Jos Oomens
- Radboud University, Institute for Molecules and
Materials, FELIX Laboratory, Toernooiveld 7c, 6525 ED Nijmegen, The Netherlands
- University of Amsterdam, Science
Park 904, 1098XH Amsterdam, The Netherlands
| | - Brad Bendiak
- Department
of Cell and Developmental Biology and Program in Structural Biology
and Biochemistry, University of Colorado Health Sciences Center, Denver, Colorado 80045, United States
| | - John R. Eyler
- Department
of Chemistry, University of Florida, Gainesville, Florida 32611-7200, United States
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29
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Yang J, Calero C, Bonomi M, Martí J. Specific Ion Binding at Phospholipid Membrane Surfaces. J Chem Theory Comput 2015; 11:4495-9. [DOI: 10.1021/acs.jctc.5b00540] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Jing Yang
- Department
of Physics and Nuclear Engineering, Technical University of Catalonia-Barcelona Tech, B4-B5 Northern Campus, Jordi Girona 1-3, 08034 Barcelona, Catalonia, Spain
| | - Carles Calero
- Center
for Polymer Studies and Department of Physics, Boston University, 590
Commonwealth Avenue, Boston, Massachusetts 02215, United States
| | - Massimiliano Bonomi
- Department
of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - Jordi Martí
- Department
of Physics and Nuclear Engineering, Technical University of Catalonia-Barcelona Tech, B4-B5 Northern Campus, Jordi Girona 1-3, 08034 Barcelona, Catalonia, Spain
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30
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DePalma JW, Kelleher PJ, Johnson CJ, Fournier JA, Johnson MA. Vibrational Signatures of Solvent-Mediated Deformation of the Ternary Core Ion in Size-Selected [MgSO4Mg(H2O)n=4–11]2+ Clusters. J Phys Chem A 2015; 119:8294-302. [DOI: 10.1021/acs.jpca.5b04612] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Joseph W. DePalma
- Sterling
Chemistry Laboratory,
Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, United States
| | - Patrick J. Kelleher
- Sterling
Chemistry Laboratory,
Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, United States
| | - Christopher J. Johnson
- Sterling
Chemistry Laboratory,
Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, United States
| | - Joseph A. Fournier
- Sterling
Chemistry Laboratory,
Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, United States
| | - Mark A. Johnson
- Sterling
Chemistry Laboratory,
Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, United States
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31
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Heiles S, Cooper RJ, DiTucci MJ, Williams ER. Hydration of guanidinium depends on its local environment. Chem Sci 2015; 6:3420-3429. [PMID: 28706704 PMCID: PMC5490459 DOI: 10.1039/c5sc00618j] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2015] [Accepted: 04/14/2015] [Indexed: 01/10/2023] Open
Abstract
Hydration of gaseous guanidinium (Gdm+) with up to 100 water molecules attached was investigated using infrared photodissociation spectroscopy in the hydrogen stretch region between 2900 and 3800 cm-1. Comparisons to IR spectra of low-energy computed structures indicate that at small cluster size, water interacts strongly with Gdm+ with three inner shell water molecules each accepting two hydrogen bonds from adjacent NH2 groups in Gdm+. Comparisons to results for tetramethylammonium (TMA+) and Na+ enable structural information for larger clusters to be obtained. The similarity in the bonded OH region for Gdm(H2O)20+vs. Gdm(H2O)100+ and the similarity in the bonded OH regions between Gdm+ and TMA+ but not Na+ for clusters with <50 water molecules indicate that Gdm+ does not significantly affect the hydrogen-bonding network of water molecules at large size. These results indicate that the hydration around Gdm+ changes for clusters with more than about eight water molecules to one in which inner shell water molecules only accept a single H-bond from Gdm+. More effective H-bonding drives this change in inner-shell water molecule binding to other water molecules. These results show that hydration of Gdm+ depends on its local environment, and that Gdm+ will interact with water even more strongly in an environment where water is partially excluded, such as the surface of a protein. This enhanced hydration in a limited solvation environment may provide new insights into the effectiveness of Gdm+ as a protein denaturant.
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Affiliation(s)
- Sven Heiles
- Department of Chemistry , University of California , B42 Hildebrand Hall , Berkeley , CA 94720 , USA .
| | - Richard J Cooper
- Department of Chemistry , University of California , B42 Hildebrand Hall , Berkeley , CA 94720 , USA .
| | - Matthew J DiTucci
- Department of Chemistry , University of California , B42 Hildebrand Hall , Berkeley , CA 94720 , USA .
| | - Evan R Williams
- Department of Chemistry , University of California , B42 Hildebrand Hall , Berkeley , CA 94720 , USA .
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32
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Duffy EM, Marsh BM, Garand E. Probing the Hydrogen-Bonded Water Network at the Active Site of a Water Oxidation Catalyst: [Ru(bpy)(tpy)(H2O)]2+·(H2O)0–4. J Phys Chem A 2015; 119:6326-32. [DOI: 10.1021/acs.jpca.5b04778] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Erin M. Duffy
- Department of Chemistry, University of Wisconsin, 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - Brett M. Marsh
- Department of Chemistry, University of Wisconsin, 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - Etienne Garand
- Department of Chemistry, University of Wisconsin, 1101 University Avenue, Madison, Wisconsin 53706, United States
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33
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Wheeler OW, Carl DR, Hofstetter TE, Armentrout PB. Hydration Enthalpies of Ba2+(H2O)x, x = 1–8: A Threshold Collision-Induced Dissociation and Computational Investigation. J Phys Chem A 2015; 119:3800-15. [DOI: 10.1021/acs.jpca.5b01087] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Oscar W. Wheeler
- Department of Chemistry, University of Utah, 315 South 1400
East, Room 2020, Salt Lake
City, Utah 84112, United States
| | - Damon R. Carl
- Department of Chemistry, University of Utah, 315 South 1400
East, Room 2020, Salt Lake
City, Utah 84112, United States
| | - Theresa E. Hofstetter
- Department of Chemistry, University of Utah, 315 South 1400
East, Room 2020, Salt Lake
City, Utah 84112, United States
| | - P. B. Armentrout
- Department of Chemistry, University of Utah, 315 South 1400
East, Room 2020, Salt Lake
City, Utah 84112, United States
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34
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Lam TW, Zhang H, Siu CK. Reductions of oxygen, carbon dioxide, and acetonitrile by the magnesium(II)/magnesium(I) couple in aqueous media: theoretical insights from a nano-sized water droplet. J Phys Chem A 2015; 119:2780-92. [PMID: 25738586 DOI: 10.1021/jp511490n] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Reductions of O2, CO2, and CH3CN by the half-reaction of the Mg(II)/Mg(I) couple (Mg(2+) + e(-) → Mg(+•)) confined in a nanosized water droplet ([Mg(H2O)16](•+)) have been examined theoretically by means of density functional theory based molecular dynamics methods. The present works have revealed many intriguing aspects of the reaction dynamics of the water clusters within several picoseconds or even in subpicoseconds. The reduction of O2 requires an overall doublet spin state of the system. The reductions of CO2 and CH3CN are facilitated by their bending vibrations and the electron-transfer processes complete within 0.5 ps. For all reactions studied, the radical anions, i.e., O2(•-), CO2(•-), and CH3CN(•-), are initially formed on the cluster surface. O2(•-) and CO2(•-) can integrate into the clusters due to their high hydrophilicity. They are either solvated in the second solvation shell of Mg(2+) as a solvent-separated ion pair (ssip) or directly coordinated to Mg(2+) as a contact-ion pair (cip) having the (1)η-[MgO2](•+) and (1)η-[MgOCO](•+) coordination modes. The (1)η-[MgO2](•+) core is more crowded than the (1)η-[MgOCO](•+) core. The reaction enthalpies of the formation of ssip and cip of [Mg(CO2)(H2O)16](•+) are -36 ± 4 kJ mol(-1) and -30 ± 9 kJ mol(-1), respectively, which were estimated based on the average temperature changes during the ion-molecule reaction between CO2 and [Mg(H2O)16](•+). The values for the formation of ssip and cip of [Mg(O2)(H2O)16](•+) are estimated to be -112 ± 18 kJ mol(-1) and -128 ± 28 kJ mol(-1), respectively. CH3CN(•-) undergoes protonation spontaneously to form the hydrophobic [CH3CN, H](•). Both CH3CN and [CH3CN, H](•) cannot efficiently penetrate into the clusters with activation barriers of 22 kJ mol(-1) and ∼40 kJ mol(-1), respectively. These results provide fundamental insights into the solvation dynamics of the Mg(2+)/Mg(•+) couple on the molecular level.
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Affiliation(s)
- Tim-Wai Lam
- Department of Biology and Chemistry, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon Tong, Hong Kong SAR, P. R. China
| | - Han Zhang
- Department of Biology and Chemistry, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon Tong, Hong Kong SAR, P. R. China
| | - Chi-Kit Siu
- Department of Biology and Chemistry, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon Tong, Hong Kong SAR, P. R. China
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35
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Marsh BM, Voss JM, Zhou J, Garand E. Coordination structure and charge transfer in microsolvated transition metal hydroxide clusters [MOH]+(H2O)1–4. Phys Chem Chem Phys 2015; 17:23195-206. [DOI: 10.1039/c5cp03914b] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Infrared vibrational predissociation spectra of transition metal hydroxide clusters, [MOH]+(H2O)1–4·D2 with M = Mn, Fe, Co, Ni, Cu, and Zn, are presented and analyzed, showing solvent driven changes in coordination and charge transfer.
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Affiliation(s)
- Brett M. Marsh
- Department of Chemistry
- University of Wisconsin-Madison
- Madison
- USA
| | - Jonathan M. Voss
- Department of Chemistry
- University of Wisconsin-Madison
- Madison
- USA
| | - Jia Zhou
- Department of Chemistry
- University of Wisconsin-Madison
- Madison
- USA
| | - Etienne Garand
- Department of Chemistry
- University of Wisconsin-Madison
- Madison
- USA
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36
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Ganguly Neogi S, Chaudhury P. Structural and spectroscopic studies of water-alkaline earth ion micro clusters: an alternate approach using genetic algorithm in conjunction with quantum chemical methods. INDIAN JOURNAL OF PHYSICS 2014; 88:781-793. [DOI: 10.1007/s12648-014-0478-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/19/2023]
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37
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Unimolecular and hydrolysis channels for the detachment of water from microsolvated alkaline earth dication (Mg2+, Ca2+, Sr2+, Ba2+) clusters. Theor Chem Acc 2014. [DOI: 10.1007/s00214-014-1450-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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38
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Donald W, Williams E. Measuring Absolute Single Half-Cell Reduction Potentials with Mass Spectrometry. ELECTROANALYTICAL CHEMISTRY: A SERIES OF ADVANCES 2013. [DOI: 10.1201/b15576-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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39
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Rutkowski PX, Michelini MDC, Gibson JK. Proton Transfer in Th(IV) Hydrate Clusters: A Link to Hydrolysis of Th(OH)22+ to Th(OH)3+ in Aqueous Solution. J Phys Chem A 2013; 117:451-9. [DOI: 10.1021/jp309658x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Philip X. Rutkowski
- Chemical Sciences
Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | | | - John K. Gibson
- Chemical Sciences
Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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40
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Han L, Hyung SJ, Ruotolo BT. Dramatically stabilizing multiprotein complex structure in the absence of bulk water using tuned Hofmeister salts. Faraday Discuss 2013; 160:371-88; discussion 389-403. [PMID: 23795511 PMCID: PMC3695445 DOI: 10.1039/c2fd20099f] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2024]
Abstract
The role that water plays in the salt-based stabilization of proteins is central to our understanding of protein biophysics. Ion hydration and the ability of ions to alter water surface tension are typically invoked, along with direct ion-protein binding, to describe Hofmeister stabilization phenomena observed for proteins experimentally, but the relative influence of these forces has been extraordinarily difficult to measure directly. Recently, we have used gas-phase measurements of proteins and large multiprotein complexes, using a combination of innovative ion mobility (IM) and mass spectrometry (MS) techniques, to assess the ability of bound cations and anions to stabilize protein ions in the absence of the solvation forces described above. Our previous work has studied a broad set of 12 anions bound to a range of proteins and protein complexes, and while primarily motivated by the analytical challenges surrounding the gas-phase measurement of solution-phase relevant protein structures, our work has also lead to a detailed physical mechanism of anion-protein complex stabilization in the absence of bulk solvent. Our more-recent work has screened a similarly-broad set of cations for their ability to stabilize gas-phase protein structure, and we have discovered surprising differences between the operative mechanisms for cations and anions in gas-phase protein stabilization. In both cases, cations and anions affect protein stabilization in the absence of solvent in a manner that is generally reversed relative to their ability to stabilize the same proteins in solution. In addition, our evidence suggests that the relative solution-phase binding affinity of the anions and cations studied here is preserved in our gas-phase measurements, allowing us to study the influence of such interactions in detail. In this report, we collect and summarize such gas-phase measurements to distill a generalized picture of salt-based protein stabilization in the absence of bulk water. Further, we communicate our most recent efforts to study the combined effects of stabilizing cations and anions on gas-phase proteins, and identify those salts that bear anion/cation pairs having the strongest stabilizing influence on protein structures
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Affiliation(s)
- Linjie Han
- Department of Chemistry, University of Michigan, 930 N. University Ave., Ann Arbor, MI 48109
| | - Suk-Joon Hyung
- Department of Chemistry, University of Michigan, 930 N. University Ave., Ann Arbor, MI 48109
| | - Brandon T. Ruotolo
- Department of Chemistry, University of Michigan, 930 N. University Ave., Ann Arbor, MI 48109
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41
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Carl DR, Armentrout PB. Threshold Collision‐Induced Dissociation of Hydrated Magnesium: Experimental and Theoretical Investigation of the Binding Energies for Mg
2+
(H
2
O)
x
Complexes (
x
=2–10). Chemphyschem 2012; 14:681-97. [DOI: 10.1002/cphc.201200860] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2012] [Indexed: 11/10/2022]
Affiliation(s)
- Damon R. Carl
- Department of Chemistry, University of Utah, 315 S. 1400 E. Room 2020, Salt Lake City, UT 84112 (USA)
- Current address: Heritage Research Group, 7901 W. Morris St., Indianapolis, IN 46231 (USA)
| | - Peter B. Armentrout
- Department of Chemistry, University of Utah, 315 S. 1400 E. Room 2020, Salt Lake City, UT 84112 (USA)
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42
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Bai G, Yi HB, Li HJ, Xu JJ. Hydration characteristics of Ca2+and Mg2+: a density functional theory, polarized continuum model and molecular dynamics investigation. Mol Phys 2012. [DOI: 10.1080/00268976.2012.737035] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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43
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Analyzing coordination preferences of Mg2+ complexes: insights from computational and database study. Struct Chem 2012. [DOI: 10.1007/s11224-012-0113-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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44
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Crestoni ME, Chiavarino B, Scuderi D, Di Marzio A, Fornarini S. Discrimination of 4-hydroxyproline diastereomers by vibrational spectroscopy of the gaseous protonated species. J Phys Chem B 2012; 116:8771-9. [PMID: 22764742 DOI: 10.1021/jp302382p] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Hydroxylation of proline is a prominent oxidative post-translational modification (oxPTM) in animals, characterized by site specificity and stereochemical control. The presence of this irreversible modification and the ensuing generation of a chiral center have been assayed in (2S,4R)-4-hydroxyproline and (2S,4S)-4-hydroxyproline forming the protonated species by electrospray ionization and sampling them by infrared multiple photon dissociation (IRMPD) spectroscopy. IRMPD spectra, recorded both in the 950-1950 cm(-1) (using the CLIO free electron laser) and in the 3200-3700 cm(-1) [using a tabletop parametric oscillator/amplifier (OPO/OPA) laser] regions, have been interpreted by comparison with the absorbance spectra of the lowest energy structures calculated at MP2/6-311+G** level of theory. Remarkable spectral differences have emerged in the fingerprint region, pointing to the unambiguous discrimination between S,R and S,S diastereomers. The main differences arise from the position of the carbonyl stretching mode, a signature of nonzwitterionic structures, moving from 1750 cm(-1) for the S,R form to 1770 cm(-1) for the S,S diastereomer. Furthermore, a well-defined band associated with the NH(2) wagging mode at 1333 cm(-1) is a distinct mark of the S,S isomer. Each gaseous protonated epimer comprises a population of at least three conformers, stabilized by intramolecular hydrogen bonds linking the two hydrogens of protonated secondary amine group with the 4-hydroxy substituent and with an oxygen atom of the carboxylic group, respectively. Interestingly, a tendency to adopt either C(4)-exo (up) or C(4)-endo (down) pyrrolidine puckering upon proline 4(R)- or 4(S)-hydroxylation, respectively, is observed here. The same bias is found in neutral hydroxyprolines and in collagen model peptides. In the protonated species under examination, this bias originates chirality-induced vibrational features revealed by IRMPD spectroscopy.
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Affiliation(s)
- Maria Elisa Crestoni
- Dipartimento di Chimica e Tecnologie del Farmaco, Università di Roma La Sapienza, P. le A. Moro 5, I-00185 Roma, Italy.
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45
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O’Brien JT, Williams ER. Effects of Ions on Hydrogen-Bonding Water Networks in Large Aqueous Nanodrops. J Am Chem Soc 2012; 134:10228-36. [DOI: 10.1021/ja303191r] [Citation(s) in RCA: 86] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Jeremy T. O’Brien
- Department of Chemistry, University of California, Berkeley, California 94720-1460,
United States
| | - Evan R. Williams
- Department of Chemistry, University of California, Berkeley, California 94720-1460,
United States
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46
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47
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Burt MB, Decker SGA, Fridgen TD. Water binding energies of [Pb(amino acid-H)H2O]+ complexes determined by blackbody infrared radiative dissociation. Phys Chem Chem Phys 2012; 14:15118-26. [DOI: 10.1039/c2cp41440f] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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48
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O'Brien JT, Williams ER. Coordination numbers of hydrated divalent transition metal ions investigated with IRPD spectroscopy. J Phys Chem A 2011; 115:14612-9. [PMID: 22098330 DOI: 10.1021/jp210878s] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Hydration of the divalent transition metal ions, Mn, Fe, Co, Ni, Cu, and Zn, with 5-8 water molecules attached was investigated using infrared photodissociation spectroscopy and photodissociation kinetics. At 215 K, spectral intensities in both the bonded-OH and free-OH stretch regions indicate that the average coordination number (CN) of Mn(2+), Fe(2+), Co(2+), and Ni(2+) is ~6, and these CN values are greater than those of Cu(2+) and Zn(2+). Ni has the highest CN, with no evidence for any population of structures with a water molecule in a second solvation shell for the hexa-hydrate at temperatures up to 331 K. Mn(2+), Fe(2+), and Co(2+) have similar CN at low temperature, but spectra of Mn(2+)(H(2)O)(6) indicate a second population of structures with a water molecule in a second solvent shell, i.e., a CN < 6, that increases in abundance at higher temperature (305 K). The propensity for these ions to undergo charge separation reactions at small cluster size roughly correlates with the ordering of the hydrolysis constants of these ions in aqueous solution and is consistent with the ordering of average CN values established from the infrared spectra of these ions.
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Affiliation(s)
- Jeremy T O'Brien
- Department of Chemistry, University of California, Berkeley, California 94720-1460, USA
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49
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Burt MB, Decker SGA, Atkins CG, Rowsell M, Peremans A, Fridgen TD. Structures of bare and hydrated [Pb(aminoacid-H)]+ complexes using infrared multiple photon dissociation spectroscopy. J Phys Chem B 2011; 115:11506-18. [PMID: 21875029 DOI: 10.1021/jp2068655] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Infrared multiple-photon dissociation (IRMPD) spectroscopy was used to determine the gas-phase structures of deprotonated Pb(2+)/amino acid (Aa) complexes with and without a solvent molecule present. Five amino acid complexes with side chains containing only carbon and hydrogen (Ala, Val, Leu, Ile, Pro) and one with a basic side chain (Lys) were compared. These experiments demonstrated that all [Pb(Aa-H)](+) complexes have Pb(2+) covalently bound between the amine nitrogen and carbonyl oxygen. The nonhydrated complexes containing Ala, Val, Leu, Ile, and Pro are amine-deprotonated, whereas the one containing Lys is deprotonated at its carboxylic acid. The difference is attributed to the polar and basic side chain of lysine, which helps stabilize Pb(2+). IRMPD spectroscopy was also performed on the monohydrated analogues of the [Pb(Aa-H)](+) complexes. The [Pb(Aa-H)H(2)O](+) complexes, where Aa = Ala, Val, Leu, and Ile, exhibited two N-H stretches as well as a carboxylic acid O-H and a PbO-H stretch. Hence, their structures are monohydrated versions of the amine-deprotonated [Pb(Aa-H)](+) complexes where a proton transfer has occurred from the lead-bound water to the deprotonated amine. The IRMPD spectrum and calculations suggest that [Pb(Pro-H)H(2)O](+) has a hydrated carboxylate salt structure. The structure of [Pb(Lys-H)H(2)O](+) was also carboxyl-deprotonated, but Pb(2+) is bound to the carbonyl oxygen and the amine nitrogen, with one of the protons belonging to the water transferred to the basic side chain. This results in an intramolecular hydrogen bond that does not absorb in the region of the spectrum probed in these experiments. The IRMPD spectra and structural characterizations were confirmed and aided by infrared spectra calculated at the B3LYP/6-31+G(d,p) level of theory and 298 K enthalpies and Gibbs energies using the MP2(full)/6-311++G(2d,2p) method on the B3LYP geometries.
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Affiliation(s)
- Michael B Burt
- Department of Chemistry, Memorial University of Newfoundland, St. John's, Newfoundland and Labrador, Canada, A1B 3X7
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50
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Carnegie PD, Bandyopadhyay B, Duncan MA. Infrared spectroscopy of Mn+ (H2O) and Mn2+ (H2O) via argon complex predissociation. J Phys Chem A 2011; 115:7602-9. [PMID: 21619058 DOI: 10.1021/jp203501n] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Singly and doubly charged manganese-water cations, and their mixed complexes with attached argon atoms, are produced by laser vaporization in a pulsed nozzle source. Complexes of the form Mn(+)(H(2)O)Ar(n) (n = 1-4) and Mn(2+)(H(2)O)Ar(4) are studied via mass-selected infrared photodissociation spectroscopy, detected in the mass channels corresponding to the elimination of argon. Sharp resonances are detected for all complexes in the region of the symmetric and asymmetric stretch vibrations of water. With the guidance of density functional theory computations, specific vibrational band resonances are assigned to complexes having different argon attachment configurations. In the small singly charged complexes, argon adds first to the metal ion site and later in larger clusters to the hydrogens of water. The doubly charged complex has argon only on the metal ion. Vibrations in all of these complexes are shifted to lower frequencies than those of the free water molecule. These shifts are greater when argon is attached to hydrogen and also greater for the dication compared to the singly charged species. Cation binding also causes the IR intensities for water vibrations to be much greater than those of the free water molecule, and the relative intensities are greater for the symmetric stretch than the asymmetric stretch. This latter effect is also enhanced for the dication complex.
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Affiliation(s)
- P D Carnegie
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556, United States
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