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Johnson KL, Graves AB, Eckhert K, Liptak MD. Second-sphere tuning of analogues for the ferric-hydroperoxoheme form of Mycobacterium tuberculosis MhuD. J Inorg Biochem 2023; 246:112300. [PMID: 37364353 DOI: 10.1016/j.jinorgbio.2023.112300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 06/15/2023] [Accepted: 06/17/2023] [Indexed: 06/28/2023]
Abstract
Mycobacterium tuberculosis MhuD catalyzes the oxygenation of heme to mycobilin; experimental data presented here elucidates the novel hydroxylation reaction catalyzed by this enzyme. Analogues for the critical ferric-hydroperoxoheme (MhuD-heme-OOH) intermediate of this enzyme were characterized using UV/Vis absorption (Abs), circular dichroism (CD), and magnetic CD (MCD) spectroscopies. In order to extract electronic transition energies from these spectroscopic data, a novel global fitting model was developed for analysis of UV/Vis Abs, CD, and MCD data. A variant of MhuD was prepared, N7S, which weakens the affinity of heme-bound enzyme for a hydroperoxo analogue, azide, without significantly altering the protein secondary structure. Global fitting of spectroscopic data acquired in this study revealed that the second-sphere N7S substitution perturbs the electronic structure of two analogues for MhuD-heme-OOH: azide-inhibited MhuD (MhuD-heme-N3) and cyanide-inhibited MhuD (MhuD-heme-CN). The ground state electronic structures of MhuD-heme-N3 and MhuD-heme-CN were assessed using variable-temperature, variable-field MCD. Altogether, these data strongly suggest that there is a hydrogen bond between the Asn7 side-chain and the terminal oxygen of the hydroperoxo ligand in MhuD-heme-OOH. As discussed herein, this finding supports a novel hydroxylation reaction mechanism where the Asn7 side-chain guides a transient hydroxyl radical derived from homolysis of the OO bond in MhuD-heme-OOH to the β- or δ-meso carbon of the porphyrin ligand yielding β- or δ-meso-hydroxyheme, respectively.
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Affiliation(s)
- Kayla L Johnson
- Department of Chemistry, University of Vermont, 82 University Place, Burlington, VT 05405, United States of America
| | - Amanda B Graves
- Department of Chemistry, University of Vermont, 82 University Place, Burlington, VT 05405, United States of America
| | - Kaitlyn Eckhert
- Department of Chemistry, University of Vermont, 82 University Place, Burlington, VT 05405, United States of America
| | - Matthew D Liptak
- Department of Chemistry, University of Vermont, 82 University Place, Burlington, VT 05405, United States of America.
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Schuelke-Sanchez AE, Cornetta AR, Kocian TA, Conger MA, Liptak MD. Ruffling is essential for Staphylococcus aureus IsdG-catalyzed degradation of heme to staphylobilin. J Inorg Biochem 2022; 230:111775. [PMID: 35247855 PMCID: PMC8930504 DOI: 10.1016/j.jinorgbio.2022.111775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Revised: 01/31/2022] [Accepted: 02/21/2022] [Indexed: 10/19/2022]
Abstract
Non-canonical heme oxygenases are enzymes that degrade heme to non-biliverdin products within bacterial heme iron acquisition pathways. These enzymes all contain a conserved second-sphere Trp residue that is essential for enzymatic turnover. Here, UV/Vis absorption (Abs) and circular dichroism (CD) spectroscopies were employed to show that the W67F variant of IsdG perturbs the heme substrate conformation. In general, a dynamic equilibrium between "planar" and "ruffled" substrate conformations exists within non-canonical heme oxygenases, and that the second-sphere Trp favors population of the "ruffled" substrate conformation. 1H nuclear magnetic resonance and magnetic CD spectroscopies were used to characterize the electronic structures of IsdG and IsdI variants with different substrate conformational distributions. These data revealed that the "ruffled" substrate conformation promotes partial porphyrin-to‑iron electron transfer, which makes the meso carbons of the porphyrin ring susceptible to radical attack. Finally, UV/Vis Abs spectroscopy was utilized to quantify the enzymatic rates, and electrospray ionization mass spectrometry was used to identify the product distributions, for variants of IsdG with altered substrate conformational distributions. In general, the rate of heme oxygenation by non-canonical heme oxygenases depends upon the population of the "ruffled" substrate conformation. Also, the production of staphylobilin or mycobilin by these enzymes is correlated with the population of the "ruffled" substrate conformation, since variants that favor population of the "planar" substrate conformation yield significant amounts of biliverdin. These data can be understood within the framework of a concerted rearrangement mechanism for the monooxygenation of heme to meso-hydroxyheme by non-canonical heme oxygenases.
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3
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Yao Z, Schulz CE, Yang J, Li X, Li J. Intermolecular Interactions and Intramolecular Couplings of Binuclear Porphyrin Models for Cytochrome c Oxidase. Inorg Chem 2020; 59:1242-1255. [PMID: 31910004 DOI: 10.1021/acs.inorgchem.9b02958] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Cytochrome c oxidase (CcO) has a binuclear active site composed of a high-spin heme group and a tris-histidine-ligated copper ion (CuB). By using two different porphyrin models derived by Gunter (H2TPyPP) and us (H2TImPP), we have isolated several mono- and binuclear complexes including one carbonyl and three chloride derivatives which are determined by 100 K single-crystal X-ray. Low-temperature (4 K) EPR and multitemperature (295-25 K) Mössbauer investigations on the products not only confirmed the spin states of the two metal ions (S = 5/2 Fe3+ and S = 1/2 Cu2+) but also revealed the intermolecular interactions and intramolecular couplings which are in accordance with the crystal structural features.
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Affiliation(s)
| | - Charles E Schulz
- Department of Physics , Knox College , Galesburg , Illinois 61401 , United States
| | - Jiahui Yang
- Bruker (Beijing) Scientific Technology Company , Hechuan Road, Minhang District , Shanghai 200233 , China
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McQuarters AB, Speelman AL, Chen L, Elmore BO, Fan W, Feng C, Lehnert N. Exploring second coordination sphere effects in nitric oxide synthase. J Biol Inorg Chem 2016; 21:997-1008. [PMID: 27686338 DOI: 10.1007/s00775-016-1396-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2016] [Accepted: 09/15/2016] [Indexed: 11/28/2022]
Abstract
Second coordination sphere (SCS) effects in proteins are modulated by active site residues and include hydrogen bonding, electrostatic/dipole interactions, steric interactions, and π-stacking of aromatic residues. In Cyt P450s, extended H-bonding networks are located around the proximal cysteinate ligand of the heme, referred to as the 'Cys pocket'. These hydrogen bonding networks are generally believed to regulate the Fe-S interaction. Previous work identified the S(Cys) → Fe σ CT transition in the high-spin (hs) ferric form of Cyt P450cam and corresponding Cys pocket mutants by low-temperature (LT) MCD spectroscopy [Biochemistry 50:1053, 2011]. In this work, we have investigated the effect of the hydrogen bond from W409 to the axial Cys ligand of the heme in the hs ferric state (with H4B and L-Arg bound) of rat neuronal nitric oxide synthase oxygenase construct (nNOSoxy) using MCD spectroscopy. For this purpose, wt enzyme and W409 mutants were investigated where the H-bonding network with the axial Cys ligand is perturbed. Overall, the results are similar to Cyt P450cam and show the intense S(Cys) → Fe σ CT band in the LT MCD spectrum at about 27,800 cm-1, indicating that this feature is a hallmark of {heme-thiolate} active sites. The discovery of this MCD feature could constitute a new approach to classify {heme-thiolate} sites in hs ferric proteins. Finally, the W409 mutants show that the hydrogen bond from this group only has a small effect on the Fe-S(Cys) bond strength, at least in the hs ferric form of the protein studied here. Low-temperature MCD spectroscopy is used to investigate the effect of the hydrogen bond from W409 to the axial Cys ligand of the heme in neuronal nitric oxide synthase. The intense S(Cys) → Fe σ-CT band is monitored to identify changes in the Fe-S(Cys) bond in wild-type protein and W409 mutants.
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Affiliation(s)
- Ashley B McQuarters
- Department of Chemistry, University of Michigan, Ann Arbor, MI, 48109, USA.,Department of Biophysics, University of Michigan, Ann Arbor, MI, 48109, USA
| | - Amy L Speelman
- Department of Chemistry, University of Michigan, Ann Arbor, MI, 48109, USA.,Department of Biophysics, University of Michigan, Ann Arbor, MI, 48109, USA
| | - Li Chen
- College of Pharmacy, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Bradley O Elmore
- College of Pharmacy, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Weihong Fan
- College of Pharmacy, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Changjian Feng
- College of Pharmacy, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Nicolai Lehnert
- Department of Chemistry, University of Michigan, Ann Arbor, MI, 48109, USA. .,Department of Biophysics, University of Michigan, Ann Arbor, MI, 48109, USA.
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Graves AB, Graves MT, Liptak MD. Measurement of Heme Ruffling Changes in MhuD Using UV–vis Spectroscopy. J Phys Chem B 2016; 120:3844-53. [DOI: 10.1021/acs.jpcb.6b01497] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Amanda B. Graves
- Department of Chemistry, University of Vermont, Burlington, Vermont 05405, United States
| | - Max T. Graves
- Department of Chemistry, University of Vermont, Burlington, Vermont 05405, United States
| | - Matthew D. Liptak
- Department of Chemistry, University of Vermont, Burlington, Vermont 05405, United States
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Graves AB, Horak EH, Liptak MD. Dynamic ruffling distortion of the heme substrate in non-canonical heme oxygenase enzymes. Dalton Trans 2016; 45:10058-67. [DOI: 10.1039/c6dt00702c] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
A double-well exists along the ruffling coordinate of cyanide-inhibited ferric heme, which explains the observation of “nested” VTVH MCD saturation magnetization curves.
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Affiliation(s)
| | - Erik H. Horak
- Department of Chemistry
- University of Vermont
- Burlington
- USA
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Hydrogen bond donation to the heme distal ligand of Staphylococcus aureus IsdG tunes the electronic structure. J Biol Inorg Chem 2015; 20:757-70. [DOI: 10.1007/s00775-015-1263-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2014] [Accepted: 04/13/2015] [Indexed: 10/23/2022]
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Ikezaki A, Ono J, Ohgo Y, Fukagawa M, Ikeue T, Nakamura M. Electronic structure of low-spin six-coordinate iron(III) meso-tetrapropylchlorin complexes. J PORPHYR PHTHALOCYA 2014. [DOI: 10.1142/s1088424614500576] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Low-spin iron(III) tetrapropylchlorins [ Fe ( T n PrC ) L 2]± (L = HIm, 1-MeIm, DMAP, CN-, 4-CNPy, tBuNC) adopt the dxy-type ground state regardless of the nature of axial ligands. Among the complexes examined, [ Fe ( T n PrC )( t BuNC )2]+ has shown quite unique spectroscopic properties as described below. (1) 1 H NMR signals were extremely broad as compared with those of other complexes. In particular, 5,20- CH 2(α) signal was too broad to detect. (2) No signals except C γ were observed in 13 C NMR spectra. (3) Tetragonal splitting parameter (|Δ|) estimated by the EPR g values at 4.2 K reached as much as 12.4 λ, which is the largest |Δ| value among all the low-spin iron(III) porphyrins and porphyrinoids reported previously. On the basis of these results, we have concluded that [ Fe ( T n PrC )( t BuNC )2]+ adopts the low-spin iron(III) with (dxz, dyz)4(dxy)1 electronic ground state at 4.2–30 K where the EPR spectra are taken, while it should be expressed as the low-spin Fe ( II ) chlorin π-radical cation [ Fe II ( T n PrC .)( t BuNC )2]+ at ambient temperature where the NMR spectra are taken.
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Affiliation(s)
- Akira Ikezaki
- Department of Chemistry, School of Medicine, Toho University, Ota-ku, Tokyo 143-8540, Japan
| | - Jyunpei Ono
- Department of Chemistry, School of Medicine, Toho University, Ota-ku, Tokyo 143-8540, Japan
| | - Yoshiki Ohgo
- Department of Chemistry, School of Medicine, Toho University, Ota-ku, Tokyo 143-8540, Japan
| | - Mari Fukagawa
- Department of Chemistry, School of Medicine, Toho University, Ota-ku, Tokyo 143-8540, Japan
| | - Takahisa Ikeue
- Department of Material Science, Interdisciplinary Faculty of Science and Engineering, Shimane University, 1060 Nishikawatsu, Matsue 690-8504, Japan
| | - Mikio Nakamura
- Department of Chemistry, School of Medicine, Toho University, Ota-ku, Tokyo 143-8540, Japan
- Department of Chemistry, Faculty of Science, Toho University, Funabashi 274-8510, Japan
- Research Center for Materials with Integrated Properties, Toho University, Funabashi 274-8510, Japan
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Graves AB, Morse RP, Chao A, Iniguez A, Goulding CW, Liptak MD. Crystallographic and spectroscopic insights into heme degradation by Mycobacterium tuberculosis MhuD. Inorg Chem 2014; 53:5931-40. [PMID: 24901029 PMCID: PMC4060609 DOI: 10.1021/ic500033b] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Mycobacterium heme utilization degrader (MhuD) is a heme-degrading protein from Mycobacterium tuberculosis responsible for extracting the essential nutrient iron from host-derived heme. MhuD has been previously shown to produce unique organic products compared to those of canonical heme oxygenases (HOs) as well as those of the IsdG/I heme-degrading enzymes from Staphylococcus aureus. Here, we report the X-ray crystal structure of cyanide-inhibited MhuD (MhuD-heme-CN) as well as detailed (1)H nuclear magnetic resonance (NMR), UV/vis absorption, and magnetic circular dichroism (MCD) spectroscopic characterization of this species. There is no evidence for an ordered network of water molecules on the distal side of the heme substrate in the X-ray crystal structure, as was previously reported for canonical HOs. The degree of heme ruffling in the crystal structure of MhuD is greater than that observed for HO and less than that observed for IsdI. As a consequence, the Fe 3dxz-, 3dyz-, and 3dxy-based MOs are very close in energy, and the room-temperature (1)H NMR spectrum of MhuD-heme-CN is consistent with population of both a (2)Eg electronic state with a (dxy)(2)(dxz,dyz)(3) electron configuration, similar to the ground state of canonical HOs, and a (2)B2g state with a (dxz,dyz)(4)(dxy)(1) electron configuration, similar to the ground state of cyanide-inhibited IsdI. Variable temperature, variable field MCD saturation magnetization data establishes that MhuD-heme-CN has a (2)B2g electronic ground state with a low-lying (2)Eg excited state. Our crystallographic and spectroscopic data suggest that there are both structural and electronic contributions to the α-meso regioselectivity of MhuD-catalyzed heme cleavage. The structural distortion of the heme substrate observed in the X-ray crystal structure of MhuD-heme-CN is likely to favor cleavage at the α- and γ-meso carbons, whereas the spin density distribution may favor selective oxygenation of the α-meso carbon.
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Affiliation(s)
- Amanda B Graves
- Department of Chemistry, University of Vermont , Burlington, Vermont 05405, United States
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Riplinger C, Bill E, Daiber A, Ullrich V, Shoun H, Neese F. New Insights into the Nature of Observable Reaction Intermediates in Cytochrome P450 NO Reductase by Using a Combination of Spectroscopy and Quantum Mechanics/Molecular Mechanics Calculations. Chemistry 2014; 20:1602-14. [DOI: 10.1002/chem.201302443] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2013] [Revised: 11/04/2013] [Indexed: 11/08/2022]
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11
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Khorasani-Motlagh M, Noroozifar M, Saffari J, Patrick BO. X-ray study of the third polymorphic structure of μ-oxo-bis[(octaethylporphinato)iron(III)]: [(OEPFe)2O)]. J STRUCT CHEM+ 2012. [DOI: 10.1134/s0022476612030262] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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12
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Lehnert N. Elucidating second coordination sphere effects in heme proteins using low-temperature magnetic circular dichroism spectroscopy. J Inorg Biochem 2012; 110:83-93. [PMID: 22516139 DOI: 10.1016/j.jinorgbio.2012.02.033] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2011] [Revised: 02/27/2012] [Accepted: 02/28/2012] [Indexed: 11/29/2022]
Abstract
This paper reviews recent findings on how the second coordination sphere of heme proteins fine-tunes the properties of the heme active site via hydrogen bonding. This insight is obtained from low-temperature magnetic circular dichroism (MCD) spectroscopy. In the case of high-spin ferric hemes, MCD spectroscopy allows for the identification of a multitude of charge-transfer (CT) transitions. Using optically-detected magnetic saturation curves, out-of-plane polarized CT transitions between the heme and its axial ligand(s) can be identified. In the case of ferric Cytochrome P450cam, the corresponding S(σ)→Fe(III) CT transition can be used as a probe for the {Fe(III)-axial ligand} interaction, indicating that the hydrogen bonding network of the proximal Cys only plays a limited role for fine-tuning the Fe(III)-S(Cys) interaction. In the case of high-spin ferrous hemes with axial His/imidazole coordination, our MCD-spectroscopic investigations have uncovered a direct correlation between the strength of the hydrogen bond to the proximal imidazole ligand and the ground state of the complexes. With neutral imidazole coordination, the doubly occupied d-orbital of high-spin iron(II) is of d(π) character, located orthogonal to the heme plane. As the strength of the hydrogen bond increases, this orbital rotates into the heme plane, changing the ground state of the complex.
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Affiliation(s)
- Nicolai Lehnert
- Department of Chemistry, The University of Michigan, 930 North University Avenue, Ann Arbor, MI 48109-1055, USA.
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13
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Electrochemical titrations and reaction time courses monitored in situ by magnetic circular dichroism spectroscopy. Anal Biochem 2011; 419:110-6. [DOI: 10.1016/j.ab.2011.07.030] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2011] [Revised: 07/24/2011] [Accepted: 07/25/2011] [Indexed: 11/19/2022]
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Electronic properties of the highly ruffled heme bound to the heme degrading enzyme IsdI. Proc Natl Acad Sci U S A 2011; 108:13071-6. [PMID: 21788475 DOI: 10.1073/pnas.1101459108] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
IsdI, a heme-degrading protein from Staphylococcus aureus, binds heme in a manner that distorts the normally planar heme prosthetic group to an extent greater than that observed so far for any other heme-binding protein. To understand better the relationship between this distinct structural characteristic and the functional properties of IsdI, spectroscopic, electrochemical, and crystallographic results are reported that provide evidence that this heme ruffling is essential to the catalytic activity of the protein and eliminates the need for the water cluster in the distal heme pocket that is essential for the activity of classical heme oxygenases. The lack of heme orientational disorder in (1)H-NMR spectra of the protein argues that the catalytic formation of β- and δ-biliverdin in nearly equal yield results from the ability of the protein to attack opposite sides of the heme ring rather than from binding of the heme substrate in two alternative orientations.
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Ikeue T, Handa M, Chamberlin A, Ghosh A, Ongayi O, Vicente MGH, Ikezaki A, Nakamura M. Benzoannelation Stabilizes the dxy1 State of Low-Spin Iron(III) Porphyrinates. Inorg Chem 2011; 50:3567-81. [DOI: 10.1021/ic1024873] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Takahisa Ikeue
- Department of Chemistry, Faculty of Material Science, Shimane University, 1060 Nishikawatsu-cho, Matsue-shi, Shimane 690-8504, Japan
| | - Makoto Handa
- Department of Chemistry, Faculty of Material Science, Shimane University, 1060 Nishikawatsu-cho, Matsue-shi, Shimane 690-8504, Japan
| | - Adam Chamberlin
- Department of Chemistry and the Center for Theoretical and Computational Chemistry, University of Tromso, Breivika, N-9037 Tromso, Norway
| | - Abhik Ghosh
- Department of Chemistry and the Center for Theoretical and Computational Chemistry, University of Tromso, Breivika, N-9037 Tromso, Norway
| | - Owendi Ongayi
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | - M. Graça H. Vicente
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | - Akira Ikezaki
- Department of Chemistry, School of Medicine, Toho University, Ota-ku, Tokyo 143-8540, Japan
| | - Mikio Nakamura
- Department of Chemistry, School of Medicine, Toho University, Ota-ku, Tokyo 143-8540, Japan
- Division of Chemistry, Graduate School of Science, Toho University, Funabashi 274-8510, Japan
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Tozuka A, Ohgo Y, Ikezaki A, Taniguchi M, Nakamura M. Electronic structure of highly ruffled low-spin iron(III) porphyrinates with electron withdrawing heptafluoropropyl groups at the meso positions. Inorg Chem 2010; 49:10400-8. [PMID: 20942414 DOI: 10.1021/ic101184y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Bis(pyridine)[meso-tetrakis(heptafluoropropyl)porphyrinato]iron(III), [Fe(THFPrP)Py(2)](+), was reported to be the low-spin complex that adopts the purest (d(xz), d(yz))(4)(d(xy))(1) ground state where the energy gap between the iron d(xy) and d(π)(d(xz), d(yz)) orbitals is larger than the corresponding energy gaps of any other complexes reported previously (Moore, K. T.; Fletcher, J. T.; Therien, M. J. J. Am. Chem. Soc. 1999, 121, 5196-5209). Although the highly ruffled porphyrin core expected for this complex contributes to the stabilization of the (d(xz), d(yz))(4)(d(xy))(1) ground state, the strongly electron withdrawing C(3)F(7) groups at the meso positions should stabilize the (d(xy))(2)(d(xz), d(yz))(3) ground state. Thus, we have reexamined the electronic structure of [Fe(THFPrP)Py(2)](+) by means of (1)H NMR, (19)F NMR, and electron paramagnetic resonance (EPR) spectroscopy. The CD(2)Cl(2) solution of [Fe(THFPrP)Py(2)](+) shows the pyrrole-H signal at -10.25 ppm (298 K) in (1)H NMR, the CF(2)(α) signal at -74.6 ppm (298 K) in (19)F NMR, and the large g(max) type signal at g = 3.16 (4.2 K) in the EPR. Thus, contrary to the previous report, the complex is unambiguously shown to adopt the (d(xy))(2)(d(xz), d(yz))(3) ground state. Comparison of the spectroscopic data of a series of [Fe(THFPrP)L(2)](+) with those of the corresponding meso-tetrapropylporphyrin complexes [Fe(TPrP)L(2)](+) with various axial ligands (L) has shown that the meso-C(3)F(7) groups stabilize the (d(xy))(2)(d(xz), d(yz))(3) ground state. Therefore, it is clear that the less common (d(xz), d(yz))(4)(d(xy))(1) ground state can be stabilized by the three major factors: (i) axial ligand with low-lying π* orbitals, (ii) ruffled porphyrin ring, and (iii) electron donating substituent at the meso position.
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Affiliation(s)
- Akira Tozuka
- Division of Chemistry, Graduate School of Science, Toho University, Funabashi 274-8510, Japan
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Khorasani-Motlagh M, Noroozifar M, Saffari J, Patrick BO. Synthesis and structural determination of a new five-coordinate iron(III) porphyrin containing monoanion 1,4-phenyldicyanamide as axial ligand. Inorganica Chim Acta 2009. [DOI: 10.1016/j.ica.2009.06.049] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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18
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Ikezaki A, Ohgo Y, Nakamura M. NMR studies on the electronic structure of one-electron oxidized complexes of iron(III) porphyrinates. Coord Chem Rev 2009. [DOI: 10.1016/j.ccr.2009.01.003] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Synthesis, molecular structure, and properties of six-coordinate iron(III) porphyrin, [OEPFe(Pz)2]ClO4. Inorganica Chim Acta 2009. [DOI: 10.1016/j.ica.2009.01.007] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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20
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Paulat F, Lehnert N. Detailed assignment of the magnetic circular dichroism and UV-vis spectra of five-coordinate high-spin ferric [Fe(TPP)(Cl)]. Inorg Chem 2008; 47:4963-76. [PMID: 18438984 DOI: 10.1021/ic8002838] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
High-spin (hs) ferric heme centers occur in the catalytic or redox cycles of many metalloproteins and exhibit very complicated magnetic circular dichroism (MCD) and UV-vis absorption spectra. Therefore, detailed assignments of the MCD spectra of these species are missing. In this study, the electronic spectra (MCD and UV-vis) of the five-coordinate hs ferric model complex [Fe(TPP)(Cl)] are analyzed and assigned for the first time. A correlated fit of the absorption and low-temperature MCD spectra of [Fe(TPP)(Cl)] lead to the identification of at least 20 different electronic transitions. The assignments of these spectra are based on the following: (a) variable temperature and variable field saturation data, (b) time-dependent density functional theory calculations, (c) MCD pseudo A-terms, and (d) correlation to resonance Raman (rRaman) data to validate the assignments. From these results, a number of puzzling questions about the electronic spectra of [Fe(TPP)(Cl)] are answered. The Soret band in [Fe(TPP)(Cl)] is split into three components because one of its components is mixed with the porphyrin A2u72-->Eg82/83 (pi-->pi*) transition. The broad, intense absorption feature at higher energy from the Soret band is due to one of the Soret components and a mixed sigma and pi chloro to iron CT transition. The high-temperature MCD data allow for the identification of the Q v band at 20 202 cm(-1), which corresponds to the C-term feature at 20 150 cm(-1). Q is not observed but can be localized by correlation to rRaman data published before. Finally, the low energy absorption band around 650 nm is assigned to two P-->Fe charge transfer transitions, one being the long sought after A1u(HOMO)-->d pi transition.
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Affiliation(s)
- Florian Paulat
- Department of Chemistry, The University of Michigan, Ann Arbor, MI 48109-1055, USA
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Nakamura M, Ohgo Y, Ikezaki A. Electronic ground states of low-spin iron(III) porphyrinoids. J Inorg Biochem 2008; 102:433-45. [DOI: 10.1016/j.jinorgbio.2007.10.024] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2007] [Revised: 09/29/2007] [Accepted: 10/12/2007] [Indexed: 11/27/2022]
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van Wonderen JH, Knight C, Oganesyan VS, George SJ, Zumft WG, Cheesman MR. Activation of the cytochrome cd1 nitrite reductase from Paracoccus pantotrophus. Reaction of oxidized enzyme with substrate drives a ligand switch at heme c. J Biol Chem 2007; 282:28207-15. [PMID: 17623666 DOI: 10.1074/jbc.m701242200] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Cytochromes cd(1) are dimeric bacterial nitrite reductases, which contain two hemes per monomer. On reduction of both hemes, the distal ligand of heme d(1) dissociates, creating a vacant coordination site accessible to substrate. Heme c, which transfers electrons from donor proteins into the active site, has histidine/methionine ligands except in the oxidized enzyme from Paracoccus pantotrophus where both ligands are histidine. During reduction of this enzyme, Tyr(25) dissociates from the distal side of heme d(1), and one heme c ligand is replaced by methionine. Activity is associated with histidine/methionine coordination at heme c, and it is believed that P. pantotrophus cytochrome cd(1) is unreactive toward substrate without reductive activation. However, we report here that the oxidized enzyme will react with nitrite to yield a novel species in which heme d(1) is EPR-silent. Magnetic circular dichroism studies indicate that heme d(1) is low-spin Fe(III) but EPR-silent as a result of spin coupling to a radical species formed during the reaction with nitrite. This reaction drives the switch to histidine/methionine ligation at Fe(III) heme c. Thus the enzyme is activated by exposure to its physiological substrate without the necessity of passing through the reduced state. This reactivity toward nitrite is also observed for oxidized cytochrome cd(1) from Pseudomonas stutzeri suggesting a more general involvement of the EPR-silent Fe(III) heme d(1) species in nitrite reduction.
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Affiliation(s)
- Jessica H van Wonderen
- Centre for Metalloprotein Spectroscopy and Biology, School of Chemical Sciences and Pharmacy, University of East Anglia, Norwich NR4 7TJ, United Kingdom
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Duncan TV, Wu SP, Therien MJ. Ethyne-Bridged (Porphinato)Zinc(II)−(Porphinato)Iron(III) Complexes: Phenomenological Dependence of Excited-State Dynamics upon (Porphinato)Iron Electronic Structure. J Am Chem Soc 2006; 128:10423-35. [PMID: 16895407 DOI: 10.1021/ja061388m] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We report the synthesis, spectroscopy, potentiometric properties, and excited-state dynamical studies of 5-[(10,20-di-((4-ethyl ester)methylene-oxy)phenyl)porphinato]zinc(II)-[5'-[(10',20'- di-((4-ethyl ester)methylene-oxy)phenyl)porphinato]iron(III)-chloride]ethyne (PZn-PFe-Cl), along with a series of related supermolecules ([PZn-PFe-(L)1,2]+ species) that possess a range of metal axial ligation environments (L = pyridine, 4-cyanopyridine, 2,4,6-trimethylpyridine (collidine), and 2,6-dimethylpyridine (2,6-lutidine)). Relevant monomeric [(porphinato)iron-(ligand)1,2]+ ([PFe(L)1,2]+) benchmarks have also been synthesized and fully characterized. Ultrafast pump-probe transient absorption spectroscopic experiments that interrogate the initially prepared electronically excited states of [PFe(L)1,2]+ species bearing nonhindered axial ligands demonstrated subpicosecond-to-picosecond relaxation dynamics to the ground electronic state. Comparative pump-probe transient absorption experiments that interrogate the initially prepared excited states of PZn-PFe-Cl, [PZn-PFe-(py)2]+, [PZn-PFe-(4-CN-py)2]+, [PZn-PFe-(collidine)]+, and [PZn-PFe-(2,6-lutidine)]+ demonstrate that the spectra of all these species are dominated by a broad, intense NIR S1 --> Sn transient absorption manifold. While PZn-PFe-Cl, [PZn-PFe-(py)2]+, and [PZn-PFe-(4-CN-py)2]+ evince subpicosecond and picosecond time-scale relaxation of their respective initially prepared electronically excited states to the ground state, the excited-state dynamics observed for [PZn-PFe-(2,6-lutidine)]+ and [PZn-PFe-(collidine)]+ show fast relaxation to a [PZn+-PFe(II)] charge-separated state having a lifetime of nearly 1 ns. Potentiometric data indicate that while DeltaGCS for [PZn-PFe-(L)1,2]+ species is strongly influenced by the PFe+ ligation state [ligand (DeltaGCS): 4-cyanopyridine (-0.79 eV) < pyridine (-1.04 eV) < collidine (-1.35 eV) < chloride (-1.40 eV); solvent = CH2Cl2], the pump-probe transient absorption dynamical data demonstrate that the nature of the dominant excited-state decay pathway is not correlated with the thermodynamic driving force for photoinduced charge separation, but depends on the ferric ion ligation mode. These data indicate that sterically bulky axial ligands that drive a pentacoordinate PFe center and a weak metal axial ligand interaction serve to sufficiently suppress the normally large magnitude nonradiative decay rate constants characteristic of (porphinato)iron(III) complexes, and thus make electron transfer a competitive excited-state deactivation pathway.
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Affiliation(s)
- Timothy V Duncan
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323, USA
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Watson CT, Cai S, Shokhirev NV, Walker FA. NMR and EPR Studies of Low-Spin Fe(III) Complexes of meso-Tetra-(2,6-Disubstituted Phenyl)Porphyrinates Complexed to Imidazoles and Pyridines of Widely Differing Basicities. Inorg Chem 2005; 44:7468-84. [PMID: 16212373 DOI: 10.1021/ic0507316] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A series of bis-axially ligated complexes of iron(III) tetramesitylporphyrin, TMPFe(III), tetra-(2,6-dibromophenyl)porphyrin, (2,6-Br2)4TPPFe(III), tetra-(2,6-dichlorophenyl)porphyrin, (2,6-Cl2)4TPPFe(III), tetra-(2,6-difluorophenyl)porphyrin, (2,6-F2)4TPPFe(III), and tetra-(2,6-dimethoxyphenyl)porphyrin, (2,6-(OMe)2)4TPPFe(III), where the axial ligands are 1-methylimidazole, 2-methylimidazole, and a series of nine substituted pyridines ranging in basicity from 4-(dimethylamino)pyridine (pK(a)(PyH(+)) = 9.70) to 3- and 4-cyanopyridine (pKa(PyH+) = 1.45 and 1.1, respectively), have been prepared and characterized by EPR and 1H NMR spectroscopy. The EPR spectra, recorded at 4.2 K, show "large g(max)", rhombic, or axial signals, depending on the iron porphyrinate and axial ligand, with the g(max) value decreasing as the basicity of the pyridine decreases, thus indicating a change in electron configuration from (d(xy))2(d(xz),d(yz)3 to (d(xz),d(yz))4(d(xy))1 through each series at this low temperature. Over the temperature range of the NMR investigations (183-313 K), most of the high-basicity pyridine complexes of all five iron(III) porphyrinates exhibit simple Curie temperature dependence of their pyrrole-H paramagnetic shifts and beta-pyrrole spin densities, rho(C) approximately 0.015-0.017, that are indicative of the S = 1/2 (d(xy))(2)(d(xz),d(yz))(3) electron configuration, while the temperature dependences of the pyrrole-H resonances of the lower-basicity pyridine complexes (pK(a)(PyH(+)) < 6.00) show significant deviations from simple Curie behavior which could be fit to an expanded version of the Curie law using a temperature-dependent fitting program developed in this laboratory that includes consideration of a thermally accessible excited state. In most cases, the ground state of the lower-basicity pyridine complexes is an S = 1/2 state with a mixed (d(xy))2(d(xz),d(yz))3/(d(xz),d(yz))4(d(xy))1 electron configuration, indicating that these two are so close in energy that they cannot be separated by analysis of the NMR shifts; however, for the TMPFe(III) complexes with 3- and 4-CNPy, the ground states were found to be fairly pure (d(xz),d(yz))4(d(xy))1 electron configurations. In all but one case of the intermediate- to low-basicity pyridine complexes of the five iron(III) porphyrinates, the excited state is found to be S = 3/2, with a (d(xz),d(yz))3(d(xy))1(d(z)2)1 electron configuration, lying some 120-680 cm(-1) higher in energy, depending on the particular porphyrinate and axial ligand. Full analysis of the paramagnetic shifts to allow separation of the contact and pseudocontact contributions could be achieved only for the [TMPFe(L)2]+ series of complexes.
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Affiliation(s)
- C Todd Watson
- Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041, USA.
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Synthesis and characterization of chromium(III) octaphenylporphyrin complexes with various axial ligands: An insight into porphyrin distortion. Inorganica Chim Acta 2005. [DOI: 10.1016/j.ica.2005.01.020] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Shao J, Steene E, Hoffman B, Ghosh A. EPR, ENDOR, and DFT Studies on (?-Octahalo-meso-tetraarylporphyrin)copper Complexes: Characterization of the Metal(dx2?y2)?Porphyrin(a2u) Orbital Interaction. Eur J Inorg Chem 2005. [DOI: 10.1002/ejic.200400549] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Cai S, Lichtenberger DL, Walker FA. NMR and EPR Studies of the Bis(pyridine) and Bis(tert-butyl isocyanide) Complexes of Iron(III) Octaethylchlorin. Inorg Chem 2005; 44:1890-903. [PMID: 15762715 DOI: 10.1021/ic0490876] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The NMR and EPR spectra of a series of pyridine complexes [(OEC)Fe(L)2]+ (L = 4-Me2NPy, Py, and 4-CNPy) have been investigated. The EPR spectra at 4.2 K suggest that, with a decrease of the donor strength of the axial ligands, the complexes change their ground state from (d(xy))2 (d(xz)d(yz))3 to (d(xz)d(yz))4 (d(xy))1. The NMR data from 303 to 183 K show that at any temperature within this range the chemical shifts of pyrrole-8,17-CH2 protons increase with a decrease in the donor strength of the axial ligands. The full peak assignments of the [(OEC)Fe(L)2]+ complexes of this study have been made from COSY and NOE difference experiments. The pyrrole-8,17-CH2 and pyrroline protons show large chemical shifts (hence indicating large pi spin density on the adjacent carbons which are part of the pi system), while pyrrole-12,13-CH2 and -7,18-CH2 protons show much smaller chemical shifts, as predicted by the spin densities obtained from molecular orbital calculations, both Hückel and DFT; the DFT calculations additionally show close energy spacing of the highest five filled orbitals (of the Fe(II) complex) and strong mixing of metal and chlorin character in these orbitals that is sensitive to the donor strength of the axial substituents. The pattern of chemical shifts of the pyrrole-CH2 protons of [(OEC)Fe(t-BuNC)2]+ looks somewhat like that of [(OEC)Fe(4-Me2NPy)2]+, while the chemical shifts of the meso-protons are qualitatively similar to those of [(OEP)Fe(t-BuNC)2]+. The temperature dependence of the chemical shifts of [(OEC)Fe(t-BuNC)2]+ shows that it has a mixed (d(xz)d(yz))4 (d(xy))1 and (d(xy))2 (d(xz),d(yz))3 electron configuration that cannot be resolved by temperature-dependent fitting of the proton chemical shifts, with a S = 5/2 excited state that lies somewhat more than 2kT at room temperature above the ground state; the observed pattern of chemical shifts is the approximate average of those expected for the two S = 1/2 electronic configurations, which involve the a-symmetry SOMO of a planar chlorin ring with the unpaired electron predominantly in the d(yz) orbital and the b-symmetry SOMO of a ruffled chlorin ring with the unpaired electron predominantly in the d(xy) orbital. A rapid interconversion between the two, with calculated vibrational frequency of 22 cm(-1), explains the observed pattern of chemical shifts, while a favoring of the ruffled conformation explains the negative chemical shift (and thus the negative spin density at the alpha-pyrroline ring carbons), of the pyrroline-H of [TPCFe(t-BuNC)2]CF3SO3 (Simonneaux, G.; Kobeissi, M. J. Chem. Soc., Dalton Trans. 2001, 1587-1592). Peak assignments for high-spin (OEC)FeCl have been made by saturation transfer techniques that depend on chemical exchange between this complex and its bis-4-Me2NPy adduct. The contact shifts of the pyrrole-CH2 and meso protons of the high-spin complex depend on both sigma and pi spin delocalization due to contributions from three of the occupied frontier orbitals of the chlorin ring.
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Affiliation(s)
- Sheng Cai
- Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041, USA
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Harada R, Ōkawa H, Kojima T. Synthesis, characterization, and distortion properties of vanadyl complexes of octaphenylporphyrin and dodecaphenylporphyrin. Inorganica Chim Acta 2005. [DOI: 10.1016/j.ica.2004.08.009] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Affiliation(s)
- Charles J Reedy
- Department of Chemistry, Columbia University, 3000 Broadway, MC 3121, New York, New York 10027, USA
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Yatsunyk LA, Walker FA. NMR and EPR Spectroscopic and Structural Studies of Low-Spin, (dxz,dyz)4(dxy)1 Ground State Fe(III) Bis-tert-Butylisocyanide Complexes of Dodecasubstituted Porphyrins. Inorg Chem 2004; 43:4341-52. [PMID: 15236547 DOI: 10.1021/ic035242p] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The bis-(1,1-dimethylethylisocyanide) (tert-butylisocyanide) complexes of three iron porphyrinates (2,3,7,8,12,13,17,18-octaethyl-5,10,15,20-tetraphenylporphyrin, OETPP; 2,3,7,8,12,13,17,18-octamethyl-5,10,15,20-tetraphenylporphyrin, OMTPP; and 2,3,7,8,12,13,17,18-tetra-beta,beta'-tetramethylene-5,10,15,20-tetraphenylporphyrin, TC(6)TPP) have been prepared and studied by EPR and (1)H NMR spectroscopy. From EPR and NMR spectroscopic results it has been found that the ground states of the bis-(t-BuNC) complexes of OETPP, OMTPP, and TC(6)TPP are represented mainly (99.1-99.4%) as (d(xz,)d(yz))(4)(d(xy))(1) electron configurations, with an excited state lying 700 cm(-)(1) to higher energy for the OMTPP complex, and probably at lower and higher energies, respectively, for the OETPP and TC(6)TPP complexes. In the (1)H NMR spectra the (d(xz,)d(yz))(4)(d(xy))(1) electron configurations of all three complexes are indicated by the large and positive meso-phenyl-H shift differences, delta(m)-delta(o) and delta(m)-delta(p), and close to the diamagnetic shifts of groups (CH(3) or CH(2)) directly attached to the beta-carbons. However, in comparison to meso-only substituted porphyrinates such as [FeTPP(t-BuNC)(2)]ClO(4), the meso-phenyl shift differences are much smaller, especially for the OETPP complex. 2D NOESY spectra show that the flexibility of the porphyrin core decreases with increasing nonplanar distortion in the order TC(6)TPP > OMTPP > OETPP and in the same order the stability of the binding to t-BuNC ligands decreases. In addition, the structures of two crystalline forms of [FeOMTPP(t-BuNC)(2)]ClO(4) have been determined by X-ray crystallography. Both structures showed purely saddled porphyrin cores and somewhat off-axis binding of the isocyanide ligands. To our knowledge, this is the first example of a porphyrin complex with a purely saddled conformation that adopts the (d(xz,)d(yz))(4)(d(xy))(1) ground state. All structurally-characterized complexes of this electron configuration reported previously are ruffled. Therefore, we conclude that a ruffled geometry stabilizes the (d(xz,)d(yz))(4)(d(xy))(1) ground state, but is not necessary for its existence.
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Affiliation(s)
- Liliya A Yatsunyk
- Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041, USA
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Walker FA. Models of the Bis-Histidine-Ligated Electron-Transferring Cytochromes. Comparative Geometric and Electronic Structure of Low-Spin Ferro- and Ferrihemes. Chem Rev 2004; 104:589-615. [PMID: 14871136 DOI: 10.1021/cr020634j] [Citation(s) in RCA: 176] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- F Ann Walker
- Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041, USA.
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Hada M. Quantum-Chemical Calculations for Paramagnetic 13C NMR Chemical Shifts of Iron-Bound Cyanide Ions of Iron Porphyrins in Ground and Low-Lying Excited States Containing Ferric (dxy)2(dxz,yz)3 and (dxy)(dxz,yz)4 Configurations. J Am Chem Soc 2003; 126:486-7. [PMID: 14719944 DOI: 10.1021/ja038097n] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Accurate quantum-chemical calculations were carried out for bis(cyanide) and cyanide-imidazole Fe(III) porphyrins in the ground and low-lying excited states including both the ferric (dxy)2(dxz,yz)3 and (dxy)1(dxz,yz)4 configurations. The trans-ligand effect on the paramagnetic 13C NMR chemical shifts of the iron-bound 13CN- was well reproduced by the present calculations. Further, in bis(cyanide)(meso-tetraethyl) Fe(III) porphyrin, which has a ruffled porphyrin ring, the (dxy)1(dxz,yz)4 configuration is included in the ground state, and the alternative (dxy)2(dxz,yz)3 configuration is located closely in energy to the ground state. Ruffling of porphyrin rings extremely affects the 13C chemical shift of iron-bound CN in the (dxy)1(dxz,yz)4 configuration but not in the (dxy)2(dxz,yz)3 configuration.
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Affiliation(s)
- Masahiko Hada
- Department of Chemistry, Faculty of Science, Tokyo Metropolitan University, Hachioji, Tokyo, 192-0397, Japan.
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Benda R, Schünemann V, Trautwein AX, Cai S, Reddy Polam J, Watson CT, Shokhireva TK, Walker FA. Models of the bis-histidine-coordinated ferricytochromes: Mössbauer and EPR spectroscopic studies of low-spin iron(III) tetrapyrroles of various electronic ground states and axial ligand orientations. J Biol Inorg Chem 2003; 8:787-801. [PMID: 12898323 DOI: 10.1007/s00775-003-0472-5] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2002] [Accepted: 05/19/2003] [Indexed: 10/26/2022]
Abstract
The EPR and magnetic Mössbauer spectra of a series of axial ligand complexes of tetrakis(2,6-dimethoxyphenyl)porphyrinatoiron(III), [(2,6-(OMe)(2))(4)TPPFeL(2)](+), where L= N-methylimidazole, 2-methylimidazole, or 4-(dimethylamino)pyridine, of one axial ligand complex of tetraphenylporphyrin, the bis(4-cyanopyridine) complex [TPPFe(4-CNPy)(2)](+), and of one axial ligand complex of tetraphenylchlorin, [TPCFe(ImH)(2)](+), where ImH=imidazole, have been investigated and compared to those of low-spin Fe(III) porphyrinates and ferriheme proteins reported in the literature. On the basis of this and previous complementary spectroscopic investigations, three types of complexes have been identified: those having (d(xy))(2)(d(xz),d(yz))(3) electronic ground states with axial ligands aligned in perpendicular planes (Type I), those having (d(xy))(2)(d(xz),d(yz))(3) electronic ground states with axial ligands aligned in parallel planes (Type II), and those having the novel (d(xz),d(yz))(4)(d(xy))(1) electronic ground state (Type III). A subset of the latter type, with planar axial ligands aligned parallel to each other or strong macrocycle asymmetry that yield rhombic EPR spectra, cannot be created using the porphyrinate ligand. Type I centers are characterized by "large g(max)" EPR spectra with g>3.2 and well-resolved, widely spread magnetic Mössbauer spectra having A(zz)/ g(N)mu(N)>680 kG, with A(xx) negative in sign but much smaller in magnitude than A(zz), while Type II centers have well-resolved rhombic EPR spectra with g(zz)=2.4-3.1 and also less-resolved magnetic Mössbauer spectra, and usually have A(zz)/ g(Nmu(N) in the range of 440-660 kG (but in certain cases as small as 180 kG) and A(xx) again negative in sign but only somewhat smaller (but occasionally larger in magnitude) than A(zz), and Type III centers have axial EPR spectra with g( upper left and right quadrants ) approximately 2.6 or smaller and g( vertical line )<1.0-1.95, but often not resolved, and less-resolved magnetic Mössbauer spectra having A(zz)/ g(N)mu(N) in the range of 270-400 kG, and A(xx) again negative in sign but much smaller in magnitude than A(zz). An exception to this rule is [TPPFe(4-CNPy)(2)](+), which has A(xx)/ g(N)mu(N)=-565 kG, A(yy)/ g(N)mu(N)=629 kG, and A(zz)/ g(N)mu(N)=4 kG. A subset of Type II complexes (Type II') have rhombicities ( V/Delta) much greater than 0.67 and A(zz)/ g(N)mu(N) ranging from 320 to 170 kG, with A(xx) also negative but with the magnitude of A(xx) significantly larger than that of A(zz). These classifications are also observed for a variety of ferriheme proteins, and they lead to linear correlations between A(zz) and either A(xx), g(zz), or V/Delta for Types I and II (but not for A(zz) versus V/Delta for Type II'). Not enough data are yet available on Type III complexes to determine what, if any, correlations may be observed.
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Affiliation(s)
- Rüdiger Benda
- Institut für Physik, Universität Lübeck, Ratzeburger Allee 160, 23538, Lübeck, Germany
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Electronic effects of para-substituents on the electron configuration of dicyano[meso-tetrakis(p-substituted phenyl)porphyrinato]iron(III) complexes. Inorganica Chim Acta 2002. [DOI: 10.1016/s0020-1693(02)00819-8] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Ikezaki A, Nakamura M. Effects of solvents on the electron configurations of the low-spin dicyano[meso-tetrakis(2,4,6-triethylphenyl)porphyrinato]iron(III) complex: importance of the C-H...N weak hydrogen bonding. Inorg Chem 2002; 41:2761-8. [PMID: 12005501 DOI: 10.1021/ic0108383] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
There are two types of electron configurations, (d(xy))(2)(d(xz), d(yz))(3) and (d(xz), d(yz))(4)(d(xy))(1), in low-spin iron(III) porphyrin complexes. To reveal the solvent effects on the ground-state electron configurations, we have examined the (13)C- and (1)H-NMR spectra of low-spin dicyano[meso-tetrakis(2,4,6-triethylphenyl)porphyrinato]ferrate(III) in a variety of solvents, including protic, dipolar aprotic, and nonpolar solvents. On the basis of the NMR study, we have reached the following conclusions: (i) the complex adopts the ground state with the (d(xz), d(yz))(4)(d(xy))(1) electron configuration, the (d(xz), d(yz))(4)(d(xy)())(1) ground state, in methanol, because the d(pi) orbitals are stabilized due to the O-H...N hydrogen bonding between the coordinated cyanide and methanol; (ii) the complex also exhibits the (d(xz), d(yz))(4)(d(xy))(1) ground state in nonpolar solvents, such as chloroform and dichloromethane, which is ascribed to the stabilization of the d(pi) orbitals due to the C-H...N weak hydrogen bonding between the coordinated cyanide and the solvent molecules; (iii) the complex favors the (d(xz), d(yz))(4)(d(xy))(1) ground state in dipolar aprotic solvents, such as DMF, DMSO, and acetone, though the (d(xz), d(yz))(4)(d(xy))(1) character is less than that in chloroform and dichloromethane; (iv) the complex adopts the (d(xy))(2)(d(xz), d(yz))(3) ground state in nonpolar solvents, such as toluene, benzene, and tetrachloromethane, because of the lack of hydrogen bonding in these solvents; (v) acetonitrile behaves like nonpolar solvents, such as toluene, benzene, and tetrachloromethane, though it is classified as a dipolar aprotic solvent. Although the NMR results have been interpreted in terms of the solvent effects on the ordering of the d(xy) and d(pi) orbitals, they could also be interpreted in terms of the solvent effects on the population ratios of two isomers with different electron configurations. In fact, we have observed the unprecedented EPR spectra at 4.2 K which contain both the axial- and large g(max)-type signals in some solvents such as benzene, toluene, and acetonitrile. The observation of the two types of signals has been ascribed to the slow interconversion on the EPR time scale at 4.2 K between the ruffled complex with the (d(xz), d(yz))(4)(d(xy))(1) ground state and, possibly, the planar (or nearly planar) complex with the (d(xy))(2)(d(xz), d(yz))(3) ground state.
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Affiliation(s)
- Akira Ikezaki
- Department of Chemistry, Toho University School of Medicine, Ota-ku, Tokyo 143-8540, Japan, and Division of Biomolecular Science, Graduate School of Science, Toho University, Funabashi 274-8510, Japan
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Ghosh A, Halvorsen I, Nilsen HJ, Steene E, Wondimagegn T, Lie R, van Caemelbecke E, Guo N, Ou Z, Kadish KM. Electrochemistry of Nickel and Copper β-Octahalogeno-meso-tetraarylporphyrins. Evidence for Important Role Played by Saddling-Induced Metal(dx2-y2)−Porphyrin(“a2u”) Orbital Interactions. J Phys Chem B 2001. [DOI: 10.1021/jp011984x] [Citation(s) in RCA: 76] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Abhik Ghosh
- Institute of Chemistry, Faculty of Science, University of Tromsø, N-9037 Tromsø, Norway, and Department of Chemistry, University of Houston, Houston, Texas 77204-5641
| | - Ingar Halvorsen
- Institute of Chemistry, Faculty of Science, University of Tromsø, N-9037 Tromsø, Norway, and Department of Chemistry, University of Houston, Houston, Texas 77204-5641
| | - Henning J. Nilsen
- Institute of Chemistry, Faculty of Science, University of Tromsø, N-9037 Tromsø, Norway, and Department of Chemistry, University of Houston, Houston, Texas 77204-5641
| | - Erik Steene
- Institute of Chemistry, Faculty of Science, University of Tromsø, N-9037 Tromsø, Norway, and Department of Chemistry, University of Houston, Houston, Texas 77204-5641
| | - Tebikie Wondimagegn
- Institute of Chemistry, Faculty of Science, University of Tromsø, N-9037 Tromsø, Norway, and Department of Chemistry, University of Houston, Houston, Texas 77204-5641
| | - Renate Lie
- Institute of Chemistry, Faculty of Science, University of Tromsø, N-9037 Tromsø, Norway, and Department of Chemistry, University of Houston, Houston, Texas 77204-5641
| | - Eric van Caemelbecke
- Institute of Chemistry, Faculty of Science, University of Tromsø, N-9037 Tromsø, Norway, and Department of Chemistry, University of Houston, Houston, Texas 77204-5641
| | - Ning Guo
- Institute of Chemistry, Faculty of Science, University of Tromsø, N-9037 Tromsø, Norway, and Department of Chemistry, University of Houston, Houston, Texas 77204-5641
| | - Zhongping Ou
- Institute of Chemistry, Faculty of Science, University of Tromsø, N-9037 Tromsø, Norway, and Department of Chemistry, University of Houston, Houston, Texas 77204-5641
| | - Karl M. Kadish
- Institute of Chemistry, Faculty of Science, University of Tromsø, N-9037 Tromsø, Norway, and Department of Chemistry, University of Houston, Houston, Texas 77204-5641
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Ikeue T, Ohgo Y, Saitoh T, Yamaguchi T, Nakamura M. Factors affecting the electronic ground state of low-spin iron(III) porphyrin complexes. Inorg Chem 2001; 40:3423-34. [PMID: 11421688 DOI: 10.1021/ic001412b] [Citation(s) in RCA: 44] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
To determine the factors affecting the ground-state electron configuration of low-spin Fe(III) porphyrin complexes, we have examined the (1)H NMR, (13)C NMR, and EPR spectra of a series of low-spin bis-ligated Fe(III) porphyrin complexes [Fe(Por)L(2)](+/-), in which the positions of porphyrin substituents and the coordination ability of axial ligands are different. The seven porphyrins used in this study are meso-tetraalkylporphyrins (TRP: R is propyl, cyclopropyl, or isopropyl), meso-tetraphenylporphyrin (TPP), meso-tetrakis(2,3,4,5,6-pentafluorophenyl)porphyrin, and 5,10,15,20-tetraphenyl-2,3,7,8,12,13,17,18-octaalkylporphyrins (ORTPP: R is methyl or ethyl). The porphyrin cores of TRP are more or less S(4)-ruffled depending on the bulkiness of the alkyl substituents, while those of ORTPP are highly S(4)-saddled. Three types of axial ligands are examined which have the following characteristics in ligand field theory: they are (i) strong sigma-donating imidazole (HIm), (ii) strong sigma-donating and weak pi-accepting cyanide (CN(-)), and (iii) weak sigma-donating and strong pi-accepting tert-butyl isocyanide ((t)BuNC). In the case of the bis(HIm) complexes, only the isopropyl complex, [Fe(T(i)PrP)(HIm)(2)](+), has shown the less common (d(xz), d(yz))(4)(d(xy))(1) ground state; the other six complexes have exhibited the common (d(xy))(2)(d(xz), d(yz))(3) ground state. When the axial imidazole is replaced by cyanide, even the propyl and cyclopropyl complexes have shown the (d(xz), d(yz))(4)(d(xy))(1) ground state; the TPP and ORTPP complexes have still maintained the common (d(xy))(2)(d(xz), d(yz))(3) ground state. In the case of the bis((t)()BuNC) complexes, all the complexes have shown the (d(xz), d(yz))(4)(d(xy))(1) ground state. However, the contribution of the (d(xz), d(yz))(4)(d(xy))(1) state to the electronic ground state differs from complex to complex; the (d(xz), d(yz))(4)(d(xy))(1) contribution is the largest in [Fe(T(i)PrP)((t)()BuNC)(2)](+) and the smallest in [Fe(OETPPP)((t)BuNC)(2)](+). We have then examined the electronic ground state of low-spin [Fe(OEP)((t)BuNC)(2)](+) and [Fe(ProtoIXMe(2))((t)BuNC)(2)](+); OEP and ProtoIXMe(2) represent 2,3,7,8,12,13,17,18-octaethylporphyrin and protoporphyrin-IX dimethyl ester, respectively. These porphyrins have a(1u) HOMO in contrast to the other seven porphyrins that have a(2u) HOMO. The (13)C NMR and EPR studies have revealed that the contribution of the (d(xz), d(yz))(4)(d(xy))(1) state in these complexes is as small as that in [Fe(OETPP)((t)BuNC)(2)](+). On the basis of these results, we have concluded that the low-spin iron(III) porphyrins that have (i) strong axial ligands, (ii) highly saddle shaped porphyrin rings, (iii) porphyrins with a(1u) HOMO, and (iv) electron withdrawing substituents at the meso positions tend to maintain the common (d(xy))(2)(d(xz), d(yz))(3) ground state.
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Affiliation(s)
- T Ikeue
- Department of Chemistry, Toho University School of Medicine, Omorinishi, Ota-ku, Tokyo 143-8540
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39
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1H-NMR and EPR studies of the electronic structure of low-spin ruthenium(III) isocyanide porphyrin complexes: unusual (dxz,dyz)4 (dxy)1 configuration. J Organomet Chem 2001. [DOI: 10.1016/s0022-328x(01)00830-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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40
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Allen JW, Cheesman MR, Higham CW, Ferguson SJ, Watmough NJ. A novel conformer of oxidized Paracoccus pantotrophus cytochrome cd(1) observed by freeze-quench NIR-MCD spectroscopy. Biochem Biophys Res Commun 2000; 279:674-7. [PMID: 11118344 DOI: 10.1006/bbrc.2000.4009] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Paracoccus pantotrophus cytochrome cd(1) is a physiological nitrite reductase and an in vitro hydroxylamine reductase. The oxidised "as isolated" form of the enzyme has bis-histidinyl coordinated c-heme and upon reduction its coordination changes to histidine/methionine. Following treatment of reduced enzyme with hydroxylamine, a novel, oxidised, conformer of the enzyme is obtained. We have devised protocols for freeze-quench near-ir-MCD spectroscopy that have allowed us to establish unequivocally the c-heme coordination of this species as His/Met. Thus it is shown that the catalytically competent, hydroxylamine reoxidised, form of P. pantotrophus cytochrome cd(1) has different axial ligands to the c-heme than "as isolated" enzyme.
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Affiliation(s)
- J W Allen
- Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, United Kingdom
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41
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Fedurco M. Redox reactions of heme-containing metalloproteins: dynamic effects of self-assembled monolayers on thermodynamics and kinetics of cytochrome c electron-transfer reactions. Coord Chem Rev 2000. [DOI: 10.1016/s0010-8545(00)00292-7] [Citation(s) in RCA: 200] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Cai S, Walker FA, Licoccia S. NMR and EPR investigations of iron corrolates: iron(III) corrolate pi cation radicals or iron(IV) corrolates? Inorg Chem 2000; 39:3466-78. [PMID: 11196804 DOI: 10.1021/ic990784l] [Citation(s) in RCA: 66] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The chloroiron corrolates of 2,3,7,8,12,13,17,18-octamethyl- and 7,13-dimethyl-2,3,8,12,17,18-hexaethylcorrole ([(Me8C)FeCl] and [(7,13-Me2Et6C)FeCl], respectively) and their bisimidazole complexes have been investigated by NMR spectroscopy as a function of temperature, and by EPR spectroscopy at 4.2 K. Magnetic susceptibilities were measured by the modified Evans method. It is found that the electron configuration of the chloroiron corrolates is that of a S = 3/2 Fe(III) center coupled to a corrolate pi radical, where one electron has been removed from the pi system of the corrolate. This pi radical is antiferromagnetically coupled to the unpaired electrons of the iron to yield an overall S = 1 complex, as evidenced by the very large positive shifts of the meso-H resonances (183 and 172 ppm). That this antiferromagnetic coupling is very strong is supported by the near-Curie behavior of the 1H chemical shifts. For the chloroiron corrolates in the presence of imidazole, imidazole-d4, and N-methylimidazole at temperatures of -50 degrees C and below, the mono- and bisligand complexes are formed. The NMR spectra can be assigned on the basis of chemical exchange between the chloroiron(III) parent complex and the bisligand complex at -30 degrees C, and between the bisligand complex and the monoligand complex at -50 degrees C. The bisimidazole complexes show pyrrole CH2 and CH3 resonances characteristic of low-spin Fe(III) centers (S = 1/2), but with strongly upfield-shifted meso-H resonances (delta values of -95 and -82.5 ppm for the octamethyl complex and -188 and -161 ppm for the dimethylhexaethyl complex at 203 K) characteristic of the presence of a macrocycle-centered unpaired electron. The magnetic moments of these bisligand complexes are somewhat lower than expected for overall S = 1 systems, and decrease as the temperature is lowered. The lower apparent magnetic moments (2.0-1.8 mu B between -50 and -90 degrees C) are believed to be caused by a combination of weak or no magnetic coupling between the metal and macrocycle electrons and decreasing solubility of the complex as the temperature is lowered. The non-Curie behavior of the 1H chemical shifts observed in the low-temperature (-50 to -90 degrees C) NMR spectra likely arises from a combination of the effects of weak antiferromagnetic coupling of metal and macrocycle spins, a low-lying electronic excited state, and ligand binding/loss equilibria at the highest temperatures studied (-50 degrees C).
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Affiliation(s)
- S Cai
- Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041, USA
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Simonneaux G, Schünemann V, Morice C, Carel L, Toupet L, Winkler H, Trautwein AX, Walker FA. Structural, Magnetic, and Dynamic Characterization of the (dxz,dyz)4(dxy)1 Ground-State Low-Spin Iron(III) Tetraphenylporphyrinate Complex [(p-TTP)Fe(2,6-XylylNC)2]CF3SO3. J Am Chem Soc 2000. [DOI: 10.1021/ja994190t] [Citation(s) in RCA: 74] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Gérard Simonneaux
- Contribution from the Laboratoire de Chimie Organométallique et Biologique, UMR CNRS 6509, Université de Rennes 1, Campus de Beaulieu, 35042 Rennes Cedex, France, Institut für Physik, Medizinische Universität zu Lübeck, 160 Ratzeburger Allee, D-23538 Lübeck, Germany, Groupe de Physique Cristalline, UA CNRS 040804, Université de Rennes 1, Campus de Beaulieu, 35042 Rennes Cedex, France, and Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041
| | - Volker Schünemann
- Contribution from the Laboratoire de Chimie Organométallique et Biologique, UMR CNRS 6509, Université de Rennes 1, Campus de Beaulieu, 35042 Rennes Cedex, France, Institut für Physik, Medizinische Universität zu Lübeck, 160 Ratzeburger Allee, D-23538 Lübeck, Germany, Groupe de Physique Cristalline, UA CNRS 040804, Université de Rennes 1, Campus de Beaulieu, 35042 Rennes Cedex, France, and Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041
| | - Christophe Morice
- Contribution from the Laboratoire de Chimie Organométallique et Biologique, UMR CNRS 6509, Université de Rennes 1, Campus de Beaulieu, 35042 Rennes Cedex, France, Institut für Physik, Medizinische Universität zu Lübeck, 160 Ratzeburger Allee, D-23538 Lübeck, Germany, Groupe de Physique Cristalline, UA CNRS 040804, Université de Rennes 1, Campus de Beaulieu, 35042 Rennes Cedex, France, and Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041
| | - Laurence Carel
- Contribution from the Laboratoire de Chimie Organométallique et Biologique, UMR CNRS 6509, Université de Rennes 1, Campus de Beaulieu, 35042 Rennes Cedex, France, Institut für Physik, Medizinische Universität zu Lübeck, 160 Ratzeburger Allee, D-23538 Lübeck, Germany, Groupe de Physique Cristalline, UA CNRS 040804, Université de Rennes 1, Campus de Beaulieu, 35042 Rennes Cedex, France, and Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041
| | - Loïc Toupet
- Contribution from the Laboratoire de Chimie Organométallique et Biologique, UMR CNRS 6509, Université de Rennes 1, Campus de Beaulieu, 35042 Rennes Cedex, France, Institut für Physik, Medizinische Universität zu Lübeck, 160 Ratzeburger Allee, D-23538 Lübeck, Germany, Groupe de Physique Cristalline, UA CNRS 040804, Université de Rennes 1, Campus de Beaulieu, 35042 Rennes Cedex, France, and Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041
| | - Heiner Winkler
- Contribution from the Laboratoire de Chimie Organométallique et Biologique, UMR CNRS 6509, Université de Rennes 1, Campus de Beaulieu, 35042 Rennes Cedex, France, Institut für Physik, Medizinische Universität zu Lübeck, 160 Ratzeburger Allee, D-23538 Lübeck, Germany, Groupe de Physique Cristalline, UA CNRS 040804, Université de Rennes 1, Campus de Beaulieu, 35042 Rennes Cedex, France, and Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041
| | - Alfred X. Trautwein
- Contribution from the Laboratoire de Chimie Organométallique et Biologique, UMR CNRS 6509, Université de Rennes 1, Campus de Beaulieu, 35042 Rennes Cedex, France, Institut für Physik, Medizinische Universität zu Lübeck, 160 Ratzeburger Allee, D-23538 Lübeck, Germany, Groupe de Physique Cristalline, UA CNRS 040804, Université de Rennes 1, Campus de Beaulieu, 35042 Rennes Cedex, France, and Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041
| | - F. Ann Walker
- Contribution from the Laboratoire de Chimie Organométallique et Biologique, UMR CNRS 6509, Université de Rennes 1, Campus de Beaulieu, 35042 Rennes Cedex, France, Institut für Physik, Medizinische Universität zu Lübeck, 160 Ratzeburger Allee, D-23538 Lübeck, Germany, Groupe de Physique Cristalline, UA CNRS 040804, Université de Rennes 1, Campus de Beaulieu, 35042 Rennes Cedex, France, and Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041
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Ikeue T, Ohgo Y, Saitoh T, Nakamura M, Fujii H, Yokoyama M. Spin Distribution in Low-Spin (meso-Tetraalkylporphyrinato)iron(III) Complexes with (dxz,dyz)4(dxy)1 Configuration. Studies by 1H NMR, 13C NMR, and EPR Spectroscopies. J Am Chem Soc 2000. [DOI: 10.1021/ja992219n] [Citation(s) in RCA: 69] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Takahisa Ikeue
- Contribution from the Department of Chemistry, Toho University School of Medicine, Ota-ku, Tokyo 143-8540, Japan, Division of Biomolecular Science, Graduate School of Science, Toho University, Funabashi 274-8510, Japan, Institute for Molecular Science, Okazaki 444-8585, Japan, and Department of Chemistry, Faculty of Science, Chiba University, Chiba 263-8522, Japan
| | - Yoshiki Ohgo
- Contribution from the Department of Chemistry, Toho University School of Medicine, Ota-ku, Tokyo 143-8540, Japan, Division of Biomolecular Science, Graduate School of Science, Toho University, Funabashi 274-8510, Japan, Institute for Molecular Science, Okazaki 444-8585, Japan, and Department of Chemistry, Faculty of Science, Chiba University, Chiba 263-8522, Japan
| | - Takashi Saitoh
- Contribution from the Department of Chemistry, Toho University School of Medicine, Ota-ku, Tokyo 143-8540, Japan, Division of Biomolecular Science, Graduate School of Science, Toho University, Funabashi 274-8510, Japan, Institute for Molecular Science, Okazaki 444-8585, Japan, and Department of Chemistry, Faculty of Science, Chiba University, Chiba 263-8522, Japan
| | - Mikio Nakamura
- Contribution from the Department of Chemistry, Toho University School of Medicine, Ota-ku, Tokyo 143-8540, Japan, Division of Biomolecular Science, Graduate School of Science, Toho University, Funabashi 274-8510, Japan, Institute for Molecular Science, Okazaki 444-8585, Japan, and Department of Chemistry, Faculty of Science, Chiba University, Chiba 263-8522, Japan
| | - Hiroshi Fujii
- Contribution from the Department of Chemistry, Toho University School of Medicine, Ota-ku, Tokyo 143-8540, Japan, Division of Biomolecular Science, Graduate School of Science, Toho University, Funabashi 274-8510, Japan, Institute for Molecular Science, Okazaki 444-8585, Japan, and Department of Chemistry, Faculty of Science, Chiba University, Chiba 263-8522, Japan
| | - Masataka Yokoyama
- Contribution from the Department of Chemistry, Toho University School of Medicine, Ota-ku, Tokyo 143-8540, Japan, Division of Biomolecular Science, Graduate School of Science, Toho University, Funabashi 274-8510, Japan, Institute for Molecular Science, Okazaki 444-8585, Japan, and Department of Chemistry, Faculty of Science, Chiba University, Chiba 263-8522, Japan
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45
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Koppenhöfer A, Little RH, Lowe DJ, Ferguson SJ, Watmough NJ. Oxidase reaction of cytochrome cd(1) from Paracoccus pantotrophus. Biochemistry 2000; 39:4028-36. [PMID: 10747791 DOI: 10.1021/bi991912k] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Cytochrome cd(1) (cd(1)NIR) from Paracoccus pantotrophus, which is both a nitrite reductase and an oxidase, was reduced by ascorbate plus hexaamineruthenium(III) chloride on a relatively slow time scale (hours required for complete reduction). Visible absorption spectroscopy showed that mixing of ascorbate-reduced enzyme with oxygen at pH = 6.0 resulted in the rapid oxidation of both types of heme center in the enzyme with a linear dependence on oxygen concentration. Subsequent changes on a longer time scale reflected the formation and decay of partially reduced oxygen species bound to the d(1) heme iron. Parallel freeze-quench experiments allowed the X-band electron paramagnetic resonance (EPR) spectrum of the enzyme to be recorded at various times after mixing with oxygen. On the same millisecond time scale that simultaneous oxidation of both heme centers was seen in the optical experiments, two new EPR signals were observed. Both of these are assigned to oxidized heme c and resemble signals from the cytochrome c domain of a "semi-apo" form of the enzyme for which histidine/methionine coordination was demonstrated spectroscopically. These observations suggests that structural changes take around the heme c center that lead to either histidine/methionine axial ligation or a different stereochemistry of bis-histidine axial ligation than that found in the as prepared enzyme. At this stage in the reaction no EPR signal could be ascribed to Fe(III) d(1) heme. Rather, a radical species, which is tentatively assigned to an amino acid radical proximal to the d(1) heme iron in the Fe(IV)-oxo state, was seen. The kinetics of decay of this radical species match the generation of a new form of the Fe(III) d(1) heme, probably representing an OH(-)-bound species. This sequence of events is interpreted in terms of a concerted two-electron reduction of oxygen to bound peroxide, which is immediately cleaved to yield water and an Fe(IV)-oxo species plus the radical. Two electrons from ascorbate are subsequently transferred to the d(1) heme active site via heme c to reduce both the radical and the Fe(IV)-oxo species to Fe(III)-OH(-) for completion of a catalytic cycle.
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Affiliation(s)
- A Koppenhöfer
- Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, United Kingdom
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46
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Fülöp V, Watmough NJ, Ferguson SJ. Structure and enzymology of two bacterial diheme enzymes: Cytochrome cd1 nitrite reductase and cytochrome c peroxidase. ADVANCES IN INORGANIC CHEMISTRY 2000. [DOI: 10.1016/s0898-8838(00)51003-4] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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47
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Nakamura M, Ikeue T, Ikezaki A, Ohgo Y, Fujii H. Electron Configuration of Ferric Ions in Low-Spin (Dicyano)(meso-tetraarylporphyrinato)iron(III) Complexes. Inorg Chem 1999. [DOI: 10.1021/ic990328x] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Mikio Nakamura
- Department of Chemistry, Toho University School of Medicine, Omorinishi, Ota-ku, Tokyo 143-8540, Japan, Division of Biomolecular Science, Graduate School of Science, Toho University, Funabashi, Chiba 274-8510, Japan, and Institute for Molecular Science, Okazaki 444-8585, Japan
| | - Takahisa Ikeue
- Department of Chemistry, Toho University School of Medicine, Omorinishi, Ota-ku, Tokyo 143-8540, Japan, Division of Biomolecular Science, Graduate School of Science, Toho University, Funabashi, Chiba 274-8510, Japan, and Institute for Molecular Science, Okazaki 444-8585, Japan
| | - Akira Ikezaki
- Department of Chemistry, Toho University School of Medicine, Omorinishi, Ota-ku, Tokyo 143-8540, Japan, Division of Biomolecular Science, Graduate School of Science, Toho University, Funabashi, Chiba 274-8510, Japan, and Institute for Molecular Science, Okazaki 444-8585, Japan
| | - Yoshiki Ohgo
- Department of Chemistry, Toho University School of Medicine, Omorinishi, Ota-ku, Tokyo 143-8540, Japan, Division of Biomolecular Science, Graduate School of Science, Toho University, Funabashi, Chiba 274-8510, Japan, and Institute for Molecular Science, Okazaki 444-8585, Japan
| | - Hiroshi Fujii
- Department of Chemistry, Toho University School of Medicine, Omorinishi, Ota-ku, Tokyo 143-8540, Japan, Division of Biomolecular Science, Graduate School of Science, Toho University, Funabashi, Chiba 274-8510, Japan, and Institute for Molecular Science, Okazaki 444-8585, Japan
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Watmough NJ, Butland G, Cheesman MR, Moir JW, Richardson DJ, Spiro S. Nitric oxide in bacteria: synthesis and consumption. BIOCHIMICA ET BIOPHYSICA ACTA 1999; 1411:456-74. [PMID: 10320675 DOI: 10.1016/s0005-2728(99)00032-8] [Citation(s) in RCA: 109] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- N J Watmough
- School of Biological Sciences, Centre for Metalloprotein Spectroscopy and Biology, University of East Anglia, Norwich NR4 7TJ, UK.
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Walker F. Magnetic spectroscopic (EPR, ESEEM, Mössbauer, MCD and NMR) studies of low-spin ferriheme centers and their corresponding heme proteins. Coord Chem Rev 1999. [DOI: 10.1016/s0010-8545(99)00029-6] [Citation(s) in RCA: 234] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Nakamura M, Ikeue T, Fujii H, Yoshimura T, Tajima K. Electron Configuration and Spin Distribution in Low-Spin (meso-Tetraalkylporphyrinato)iron(III) Complexes Carrying One or Two Orientationally Fixed Imidazole Ligands1. Inorg Chem 1998. [DOI: 10.1021/ic9801241] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Mikio Nakamura
- Department of Chemistry, Toho University School of Medicine, Omorinishi, Ota-ku, Tokyo 143, Japan, Division of Biomolecular Science, Graduate School of Science, Toho University, Funabashi, Chiba 274, Japan, Institute for Life Support Technology, Yamagata Technopolis Foundation, Matsuei, Yamagata 990, Japan, and Department of Polymer Science & Technology, Kyoto Institute of Technology, Matsugasaki, Sakyo-ku, Kyoto 606, Japan
| | - Takahisa Ikeue
- Department of Chemistry, Toho University School of Medicine, Omorinishi, Ota-ku, Tokyo 143, Japan, Division of Biomolecular Science, Graduate School of Science, Toho University, Funabashi, Chiba 274, Japan, Institute for Life Support Technology, Yamagata Technopolis Foundation, Matsuei, Yamagata 990, Japan, and Department of Polymer Science & Technology, Kyoto Institute of Technology, Matsugasaki, Sakyo-ku, Kyoto 606, Japan
| | - Hiroshi Fujii
- Department of Chemistry, Toho University School of Medicine, Omorinishi, Ota-ku, Tokyo 143, Japan, Division of Biomolecular Science, Graduate School of Science, Toho University, Funabashi, Chiba 274, Japan, Institute for Life Support Technology, Yamagata Technopolis Foundation, Matsuei, Yamagata 990, Japan, and Department of Polymer Science & Technology, Kyoto Institute of Technology, Matsugasaki, Sakyo-ku, Kyoto 606, Japan
| | - Tetsuhiko Yoshimura
- Department of Chemistry, Toho University School of Medicine, Omorinishi, Ota-ku, Tokyo 143, Japan, Division of Biomolecular Science, Graduate School of Science, Toho University, Funabashi, Chiba 274, Japan, Institute for Life Support Technology, Yamagata Technopolis Foundation, Matsuei, Yamagata 990, Japan, and Department of Polymer Science & Technology, Kyoto Institute of Technology, Matsugasaki, Sakyo-ku, Kyoto 606, Japan
| | - Kunihiko Tajima
- Department of Chemistry, Toho University School of Medicine, Omorinishi, Ota-ku, Tokyo 143, Japan, Division of Biomolecular Science, Graduate School of Science, Toho University, Funabashi, Chiba 274, Japan, Institute for Life Support Technology, Yamagata Technopolis Foundation, Matsuei, Yamagata 990, Japan, and Department of Polymer Science & Technology, Kyoto Institute of Technology, Matsugasaki, Sakyo-ku, Kyoto 606, Japan
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