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Auerbach H, Faus I, Rackwitz S, Wolny JA, Chumakov AI, Knipp M, Walker FA, Schünemann V. Heme protonation affects iron-NO binding in the NO transport protein nitrophorin. J Inorg Biochem 2023; 246:112281. [PMID: 37352657 DOI: 10.1016/j.jinorgbio.2023.112281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Revised: 04/26/2023] [Accepted: 05/30/2023] [Indexed: 06/25/2023]
Abstract
The nitrophorins (NPs) comprise an unusual group of heme proteins with stable ferric heme iron nitric oxide (Fe-NO) complexes. They are found in the salivary glands of the blood-sucking kissing bug Rhodnius prolixus, which uses the NPs to transport the highly reactive signaling molecule NO. Nuclear resonance vibrational spectroscopy (NRVS) of both isoform NP2 and a mutant NP2(Leu132Val) show, after addition of NO, a strong structured vibrational band at around 600 cm-1, which is due to modes with significant Fe-NO bending and stretching contribution. Based on a hybrid calculation method, which uses density functional theory and molecular mechanics, it is demonstrated that protonation of the heme carboxyl groups does influence both the vibrational properties of the Fe-NO entity and its electronic ground state. Moreover, heme protonation causes a significant increase of the gap between the highest occupied and lowest unoccupied molecular orbital by almost one order of magnitude leading to a stabilization of the Fe-NO bond.
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Affiliation(s)
- Hendrik Auerbach
- Department of Physics, RPTU Kaiserslautern-Landau, 67663 Kaiserslautern, Germany
| | - Isabelle Faus
- Department of Physics, RPTU Kaiserslautern-Landau, 67663 Kaiserslautern, Germany
| | - Sergej Rackwitz
- Department of Physics, RPTU Kaiserslautern-Landau, 67663 Kaiserslautern, Germany
| | - Juliusz A Wolny
- Department of Physics, RPTU Kaiserslautern-Landau, 67663 Kaiserslautern, Germany
| | | | - Markus Knipp
- Max Planck Institute for Chemical Energy Conversion, Stiftstraße 34-36, 45470 Mülheim an der Ruhr, Germany; Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstraße 150, 44780 Bochum, Germany
| | - F Ann Walker
- Department of Chemistry and Biochemistry, The University of Arizona, Tucson, AZ 85721-0041, United States
| | - Volker Schünemann
- Department of Physics, RPTU Kaiserslautern-Landau, 67663 Kaiserslautern, Germany.
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2
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Serth-Guzzo JA, Turowska-Tyrk I, Safo MK, Walker FA, Debrunner PG, Scheidt WR. Characterization of the mixed axial ligand complex (4-cyanopyridine)(imidazole)(tetramesitylporphinato)iron(iii) perchlorate. Stabilization by synergic bonding. J PORPHYR PHTHALOCYA 2016; 20:254-264. [DOI: 10.1142/s1088424616500206] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The reaction of [Fe(TMP)(OClO[Formula: see text]], where TMP is the dianion of tetramesitylporphyrin, with a combination of a strong [Formula: see text]-acceptor ligand and a [Formula: see text]-donating imidazole can lead to the preparation of mixed-ligand complexes [Fe(Porph)(4-CNPy)(L)][Formula: see text] where L is imidazole itself or 1-acetylimidazole and 4-cyanopyridine is the strong [Formula: see text] acceptor ligand. The stability of the new mixed-ligand pair is the presumed result of synergic bonding between the two axial ligands. The molecular structure and other characterization of the new mixed axial ligand complex, [Fe(TMP)(4-CNPy)(HIm)]ClO4 is described. The axial ligands have a relative perpendicular arrangement with Fe–N(imidazole) = 1.945 Å and Fe–N(pyridine) = 2.021 Å. The average equatorial Fe–N[Formula: see text] distance is 1.963 Å, which is consistent with the S4-ruffled TMP core. Despite the relative perpendicular arrangement of axial ligands, the EPR spectrum of the complex is a rhombic signal and not a large gmax signal. The EPR g-values are [Formula: see text] 3.05, [Formula: see text] 2.07, and [Formula: see text] 1.22. A quadrupole doublet was seen in the Mössbauer spectrum with an isomer shift of 0.197 mm/s and quadrupole splitting of 1.935 mm/s. Two crystalline forms of [Fe(TMP)(4-CNPy)(HIm)]ClO4 have been characterized; the two forms differ only in the solvent content of the lattice. Crystal data for form A: [Formula: see text] 15.432 (12) Å, [Formula: see text] 20.696 (2) Å, [Formula: see text] 19.970 (5) Å, and [Formula: see text] 99.256 (14)[Formula: see text], monoclinic, space group P21/n, V [Formula: see text] 6295 (2) Å3, Z [Formula: see text] 4, formula FeCl3O4N8C[Formula: see text]H[Formula: see text], 8397 observed data, [Formula: see text] 0.086, [Formula: see text] 0.210, refinement on [Formula: see text]. Crystal data for form B: [Formula: see text]15.267 (3) Å, [Formula: see text]20.377 (6) Å, [Formula: see text] 19.670 (4) Å, and [Formula: see text] 98.14 (1)[Formula: see text], monoclinic, space group P[Formula: see text]/n, V = 6058 (4) Å3, Z = 4, formula C[Formula: see text]H[Formula: see text]Cl[Formula: see text]FeN8O4, 5464 observed data, [Formula: see text] 0.096, [Formula: see text] 0.112, refinement on F.
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Affiliation(s)
- Judith A. Serth-Guzzo
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana USA 46556
| | - Ilona Turowska-Tyrk
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana USA 46556
| | - Martin K. Safo
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana USA 46556
| | - F. Ann Walker
- Department of Chemistry and Biochemistry, University of Arizona, Tuscon, Arizona USA 85721-0041
| | - Peter G. Debrunner
- Department of Physics, University of Illinois, Urbana, Illinois USA 61801
| | - W. Robert Scheidt
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana USA 46556
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Berry RE, Muthu D, Yang F, Walker FA. NMR studies of the dynamics of high-spin nitrophorins: comparative studies of NP4 and NP2 at close to physiological pH. Biochemistry 2015; 54:221-39. [PMID: 25486224 PMCID: PMC4303294 DOI: 10.1021/bi501305a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
Abstract
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The
β-barrel nitrophorin (NP) heme proteins are found in
the saliva of the blood-sucking insect Rhodnius prolixus, which synthesizes and stores nitric oxide (NO) in the salivary
glands. NO is bound to iron of the NPs and is released by dilution
and an increase in pH when the insect spits its saliva into the tissues
of a victim, to aid in obtaining a blood meal. In the adult insect,
there are four nitrophorins, NP1–NP4, which have sequence similarities
in two pairs, NP1 and NP4 (90% identical) and NP2 and NP3 (80% identical).
The available crystal structures of NP4 have been used to propose
that pH-dependent changes in the conformation of two loops between
adjacent β-strands at the front opening of the protein, the
A–B and G–H loops, determine the rate of NO release.
At pH 7.3, NP4 releases NO 17 times faster than NP2 does. In this
work, the aqua complexes of NP4 and NP2 have been investigated by
nuclear magnetic resonance (NMR) relaxation measurements to probe
the pico- to nanosecond and micro- to millisecond time scale motions
at two pH values, 6.5 and 7.3. It is found that NP4-OH2 is fairly rigid and only residues in the loop regions show dynamics
at pH 6.5; at pH 7.3, much more dynamics of the loops and most of
the β-strands are observed while the α-helices remain
fairly rigid. In comparison, NP2-OH2 shows much less dynamics,
albeit somewhat more than that of the previously reported NP2-NO complex
[Muthu, D., Berry, R. E., Zhang, H., and Walker, F. A. (2013) Biochemistry 52, 7910–7925]. The reasons for this
major difference between NP4 and NP2 are discussed.
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Affiliation(s)
- Robert E Berry
- Department of Chemistry and Biochemistry, The University of Arizona , 1306 East University Boulevard, Tucson, Arizona 85721-0041, United States
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Berry RE, Yang F, Shokhireva TK, Amoia AM, Garrett S, Goren AM, Korte SR, Zhang H, Weichsel A, Montfort WR, Walker FA. Dimerization of nitrophorin 4 at low pH and comparison to the K1A mutant of nitrophorin 1. Biochemistry 2015; 54:208-20. [PMID: 25489673 PMCID: PMC4303305 DOI: 10.1021/bi5013047] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2014] [Revised: 12/08/2014] [Indexed: 11/28/2022]
Abstract
Nitrophorin 4, one of the four NO-carrying heme proteins from the salivary glands of Rhodnius prolixus, forms a homodimer at pH 5.0 with a Kd of ∼8 μM. This dimer begins to dissociate at pH 5.5 and is completely dissociated to monomer at pH 7.3, even at 3.7 mM. The dimer is significantly stabilized by binding NO to the heme and at pH 7.3 would require dilution to well below 0.2 mM to completely dissociate the NP4-NO homodimer. The primary techniques used for investigating the homodimer and the monomer-dimer equilibrium were size-exclusion fast protein liquid chromatography at pH 5.0 and (1)H{(15)N} heteronuclear single-quantum coherence spectroscopy as a function of pH and concentration. Preparation of site-directed mutants of NP4 (A1K, D30A, D30N, V36A/D129A/L130A, K38A, R39A, K125A, K125E, D132A, L133V, and K38Q/R39Q/K125Q) showed that the N-terminus, D30, D129, D132, at least one heme propionate, and, by association, likely also E32 and D35 are involved in the dimerization. The "closed loop" form of the A-B and G-H flexible loops of monomeric NP4, which predominates in crystal structures of the monomeric protein reported at pH 5.6 but not at pH 7.5 and which involves all of the residues listed above except D132, is required for dimer formation. Wild-type NP1 does not form a homodimer, but NP1(K1A) and native N-terminal NP1 form dimers in the presence of NO. The homodimer of NP1, however, is considerably less stable than that of NP4 in the absence of NO. This suggests that additional aspartate or glutamate residues present in the C-terminal region of NP4, but not NP1, are also involved in stabilizing the dimer.
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Affiliation(s)
| | - Fei Yang
- Department of Chemistry and
Biochemistry, The University of Arizona, P.O. Box 210041, Tucson, Arizona 85721-0041, United States
| | - Tatiana K. Shokhireva
- Department of Chemistry and
Biochemistry, The University of Arizona, P.O. Box 210041, Tucson, Arizona 85721-0041, United States
| | - Angela M. Amoia
- Department of Chemistry and
Biochemistry, The University of Arizona, P.O. Box 210041, Tucson, Arizona 85721-0041, United States
| | - Sarah
A. Garrett
- Department of Chemistry and
Biochemistry, The University of Arizona, P.O. Box 210041, Tucson, Arizona 85721-0041, United States
| | - Allena M. Goren
- Department of Chemistry and
Biochemistry, The University of Arizona, P.O. Box 210041, Tucson, Arizona 85721-0041, United States
| | - Stephanie R. Korte
- Department of Chemistry and
Biochemistry, The University of Arizona, P.O. Box 210041, Tucson, Arizona 85721-0041, United States
| | - Hongjun Zhang
- Department of Chemistry and
Biochemistry, The University of Arizona, P.O. Box 210041, Tucson, Arizona 85721-0041, United States
| | - Andrzej Weichsel
- Department of Chemistry and
Biochemistry, The University of Arizona, P.O. Box 210041, Tucson, Arizona 85721-0041, United States
| | - William R. Montfort
- Department of Chemistry and
Biochemistry, The University of Arizona, P.O. Box 210041, Tucson, Arizona 85721-0041, United States
| | - F. Ann Walker
- Department of Chemistry and
Biochemistry, The University of Arizona, P.O. Box 210041, Tucson, Arizona 85721-0041, United States
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Abstract
The Rhodnius nitrophorins are β-barrel proteins of the lipocalin fold with a heme protruding from the open end of the barrel. They are found in the saliva of the blood-sucking insect Rhodnius prolixus, which synthesizes and stores nitric oxide (NO) in the salivary glands, where NO is bound to iron. NO is released by dilution and an increase in pH when the insect spits its saliva into the tissues of a victim, to aid in obtaining a blood meal. In the adult insect, there are four nitrophorins, NP1-NP4. At pH 7.3, NP4 releases NO 17 times faster than NP2 does, as measured by stopped-flow kinetics. A number of crystal structures of the least abundant protein, NP4, are available. These structures have been used to propose that two loops between adjacent β-strands at the front opening of the protein, the A-B and G-H loops, determine the rate of NO release. To learn how the protein loops contribute to the release of NO for each of the nitrophorins, the dynamics of these proteins are being studied in our laboratory. In this work, the NP2-NO complex has been investigated by nuclear magnetic resonance relaxation measurements to probe the picosecond-to-nanosecond and microsecond-to-millisecond time scale motions at three pH values, 5.0, 6.5, and 7.3. It is found that at pH 5.0 and 6.5, the NP2-NO complex is rigid and only a few residues in the loop regions show dynamics, while at pH 7.3, somewhat more dynamics, particularly of the A-B loop, are observed. Comparison to other lipocalins shows that all are relatively rigid, and that the dynamics of lipocalins in general are much more subtle than those of mainly α-helical proteins.
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Affiliation(s)
- Dhanasekaran Muthu
- Department of Chemistry and Biochemistry, The University of Arizona, 1306 E. University Boulevard, Tucson, AZ 85721-0041
| | - Robert E. Berry
- Department of Chemistry and Biochemistry, The University of Arizona, 1306 E. University Boulevard, Tucson, AZ 85721-0041
| | - Hongjun Zhang
- Department of Chemistry and Biochemistry, The University of Arizona, 1306 E. University Boulevard, Tucson, AZ 85721-0041
| | - F. Ann Walker
- Department of Chemistry and Biochemistry, The University of Arizona, 1306 E. University Boulevard, Tucson, AZ 85721-0041
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Astashkin AV, Walker FA. Determination of the principal g-values of Type I or highly-anisotropic low spin (HALS) ferriheme centers in frozen solutions. J Magn Reson 2013; 231:15-21. [PMID: 23562666 PMCID: PMC3660502 DOI: 10.1016/j.jmr.2013.03.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2013] [Revised: 03/07/2013] [Accepted: 03/08/2013] [Indexed: 06/02/2023]
Abstract
Continuous wave (CW) electron paramagnetic resonance (EPR) spectroscopy of highly-anisotropic low spin (HALS) ferric heme centers in frozen solutions is not a very informative approach because usually only one feature is reliably observed in the spectra, that at the maximal principal g-value of, typically, 3.3-3.79. The other two EPR turning points are severely broadened by g-strain and are not easily observed in the first-derivative CW EPR spectra. In this work, we have explored the potential of alternative EPR techniques, the electron spin echo (ESE) field sweep and electron spin transient nutation (TN), for obtaining information about the g-tensors of such systems, using as an example a typical HALS ferric heme center, [Fe(III)((15)N-coproporphyrin)(CN)2]. The analysis of the experimental g-tensor of [Fe(III)((15)N-coproporphyrin)(CN)2](-) has shown that the widths of the underlying energy distributions for this HALS center are comparable to those found for the rhombic bis-imidazole complex. The greater effect on the g-value distributions for HALS centers is determined by near degeneracy of two of the three lower-energy d-orbitals, d(yz) and d(xz), which contain the unpaired electron.
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Affiliation(s)
- Andrei V Astashkin
- Department of Chemistry and Biochemistry, University of Arizona, Tucson, AZ 85721-0041, USA.
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Weber B, Walker FA, Karaghiosoff K. Proton NMR Investigations of Intermediate Spin Iron(III) Complexes with Macrocyclic N42-Chelate Ligands. Z Anorg Allg Chem 2013. [DOI: 10.1002/zaac.201300172] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Abriata LA, Zaballa ME, Berry RE, Yang F, Zhang H, Walker FA, Vila AJ. Electron spin density on the axial His ligand of high-spin and low-spin nitrophorin 2 probed by heteronuclear NMR spectroscopy. Inorg Chem 2013; 52:1285-95. [PMID: 23327568 PMCID: PMC3594510 DOI: 10.1021/ic301805y] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The electronic structure of heme proteins is exquisitely tuned by the interaction of the iron center with the axial ligands. NMR studies of paramagnetic heme systems have been focused on the heme signals, but signals from the axial ligands have been rather difficult to detect and assign. We report an extensive assignment of the (1)H, (13)C and (15)N resonances of the axial His ligand in the NO-carrying protein nitrophorin 2 (NP2) in the paramagnetic high-spin and low-spin forms, as well as in the diamagnetic NO complex. We find that the high-spin protein has σ spin delocalization to all atoms in the axial His57, which decreases in size as the number of bonds between Fe(III) and the atom in question increases, except that within the His57 imidazole ring the contact shifts are a balance between positive σ and negative π contributions. In contrast, the low-spin protein has π spin delocalization to all atoms of the imidazole ring. Our strategy, adequately combined with a selective residue labeling scheme, represents a straightforward characterization of the electron spin density in heme axial ligands.
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Affiliation(s)
- Luciano A Abriata
- Instituto de Biología Molecular y Celular de Rosario (IBR-CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Ocampo y Esmeralda, Predio CONICET Rosario, Rosario 2000, Santa Fe, Argentina
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Berry RE, Muthu D, Shokhireva TK, Garrett SA, Zhang H, Walker FA. Native N-terminus nitrophorin 2 from the kissing bug: similarities to and differences from NP2(D1A). Chem Biodivers 2013; 9:1739-55. [PMID: 22976966 DOI: 10.1002/cbdv.201100449] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
The first amino acid of mature native nitrophorin 2 is aspartic acid, and when expressed in E. coli, the wild-type gene of the mature protein retains the methionine-0, which is produced by translation of the start codon. This form of NP2, (M0)NP2, has been found to have different properties from its D1A mutant, for which the Met0 is cleaved by the methionine aminopeptidase of E. coli (R. E. Berry, T. K. Shokhireva, I. Filippov, M. N. Shokhirev, H. Zhang, F. A. Walker, Biochemistry 2007, 46, 6830). Native N-terminus nitrophorin 2 ((ΔM0)NP2) has been prepared by employing periplasmic expression of NP2 in E. coli using the pelB leader sequence from Erwinia carotovora, which is present in the pET-26b expression plasmid (Novagen). This paper details the similarities and differences between the three different N-terminal forms of nitrophorin 2, (M0)NP2, NP2(D1A), and (ΔM0)NP2. It is found that the NMR spectra of high- and low-spin (ΔM0)NP2 are essentially identical to those of NP2(D1A), but the rate and equilibrium constants for histamine and NO dissociation/association of the two are different.
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Affiliation(s)
- Robert E Berry
- Department of Chemistry and Biochemistry, The University of Arizona, P.O. Box 210041, Tucson, AZ 85721-0041, USA.
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Shokhireva TK, Walker FA. Erratum to: Assignment of the 1H NMR resonances of protein residues in close proximity to the heme of the nitrophorins: similarities and differences among the four proteins from the saliva of the adult blood-sucking insect Rhodnius prolixus. J Biol Inorg Chem 2012. [DOI: 10.1007/s00775-012-0953-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Walker FA, Emrick D, Rivera JE, Hanquet BJ, Buttlaire DH. Effect of heme orientation on the reduction potential of cytochrome b5. J Am Chem Soc 2012; 110:6234-40. [PMID: 22148805 DOI: 10.1021/ja00226a045] [Citation(s) in RCA: 68] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Moeser B, Janoschka A, Wolny JA, Paulsen H, Filippov I, Berry RE, Zhang H, Chumakov AI, Walker FA, Schünemann V. Nuclear inelastic scattering and Mössbauer spectroscopy as local probes for ligand binding modes and electronic properties in proteins: vibrational behavior of a ferriheme center inside a β-barrel protein. J Am Chem Soc 2012; 134:4216-28. [PMID: 22295945 DOI: 10.1021/ja210067t] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
In this work, we present a study of the influence of the protein matrix on its ability to tune the binding of small ligands such as NO, cyanide (CN(-)), and histamine to the ferric heme iron center in the NO-storage and -transport protein Nitrophorin 2 (NP2) from the salivary glands of the blood-sucking insect Rhodnius prolixus. Conventional Mössbauer spectroscopy shows a diamagnetic ground state of the NP2-NO complex and Type I and II electronic ground states of the NP2-CN(-) and NP2-histamine complex, respectively. The change in the vibrational signature of the protein upon ligand binding has been monitored by Nuclear Inelastic Scattering (NIS), also called Nuclear Resonant Vibrational Spectroscopy (NRVS). The NIS data thus obtained have also been calculated by quantum mechanical (QM) density functional theory (DFT) coupled with molecular mechanics (MM) methods. The calculations presented here show that the heme ruffling in NP2 is a consequence of the interaction with the protein matrix. Structure optimizations of the heme and its ligands with DFT retain the characteristic saddling and ruffling only if the protein matrix is taken into account. Furthermore, simulations of the NIS data by QM/MM calculations suggest that the pH dependence of the binding of NO, but not of CN(-) and histamine, might be a consequence of the protonation state of the heme carboxyls.
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Affiliation(s)
- Beate Moeser
- Technische Universität Kaiserslautern, Fachbereich Physik, Erwin-Schrödinger-Str. 56, D-67663 Kaiserslautern, Germany
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Kyndt JA, Fitch JC, Berry RE, Stewart MC, Whitley K, Meyer TE, Walker FA, Cusanovich MA. Tyrosine triad at the interface between the Rieske iron-sulfur protein, cytochrome c1 and cytochrome c2 in the bc1 complex of Rhodobacter capsulatus. Biochim Biophys Acta 2012; 1817:811-8. [PMID: 22306765 DOI: 10.1016/j.bbabio.2012.01.013] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2011] [Revised: 01/20/2012] [Accepted: 01/20/2012] [Indexed: 11/25/2022]
Abstract
A triad of tyrosine residues (Y152-154) in the cytochrome c(1) subunit (C1) of the Rhodobacter capsulatus cytochrome bc(1) complex (BC1) is ideally positioned to interact with cytochrome c(2) (C2). Mutational analysis of these three tyrosines showed that, of the three, Y154 is the most important, since its mutation to alanine resulted in significantly reduced levels, destabilization, and inactivation of BC1. A second-site revertant of this mutant that regained photosynthetic capacity was found to have acquired two further mutations-A181T and A200V. The Y152Q mutation did not change the spectral or electrochemical properties of C1, and showed wild-type enzymatic C2 reduction rates, indicating that this mutation did not introduce major structural changes in C1 nor affect overall activity. Mutations Y153Q and Y153A, on the other hand, clearly affect the redox properties of C1 (e.g. by lowering the midpoint potential as much as 117 mV in Y153Q) and the activity by 90% and 50%, respectively. A more conservative Y153F mutant on the other hand, behaves similarly to wild-type. This underscores the importance of an aromatic residue at position Y153, presumably to maintain close packing with P184, which modeling indicates is likely to stabilize the sixth heme ligand conformation.
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Affiliation(s)
- John A Kyndt
- Department of Chemistry and Biochemistry, University of Arizona, Tucson, AZ 85721, USA.
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Yatsunyk LA, Ann Walker F. Synthesis and characterization of the iron(III) complexes of tetra-(β,β'-tetramethylene)tetraphenylporphyrin, (TC6TPP)FeCl and (TC6TPP)FeONO2. J PORPHYR PHTHALOCYA 2012. [DOI: 10.1142/s1088424605000289] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The synthesis, NMR and EPR spectroscopic investigation as well as two crystal structures of ( TC 6 TPP ) FeX , where X - = chloride and nitrate are reported. The crystal structure of ( TC 6 TPP ) FeCl reveals an almost equal mixture of saddled and ruffled distortion of the porphyrin as judged by the coefficients of the lowest-frequency vibrational modes (calculated from Normal-Coordinate Structural Decomposition), while ( TC 6 TPP ) FeONO 2 is mainly saddled and more distorted overall. This difference in core structure indicates high conformational flexibility of the TC 6 TPP porphyrin ligand. Overall, both ( TC 6 TPP ) FeX structures have smaller deviation from planarity as compared to five coordinate ( OMTPP ) FeCl and ( OETPP ) FeCl . Therefore, the nature and number of peripheral substituents as well as the axial ligand(s) control geometry and conformation of the porphyrins and fine-tune their spectroscopic properties. EPR data (4.2 K) indicate a predominantly high-spin ( S = 5/2, 97.3%) ground state for ( TC 6 TPP ) FeCl and less pure high-spin state ( S = 5/2, 80%) for ( TC 6 TPP ) FeONO 2. The NMR results support an ideally saddled structure or rapid switching between saddled and ruffled conformations of ( TC 6 TPP ) FeX in solution. The flexibility of the porphyrin core was addressed by using dynamic NMR spectroscopy. The following kinetic parameters for ring inversion were obtained: Δ H ‡ = 24(1) kJ . mol −1, Δ S ‡ = −37(3) J . mol −1. K −1 and Δ H ‡ = 36(1) kJ . mol −1, Δ S ‡ = 20(4) J . mol −1. K −1 for ( TC 6 TPP ) FeCl and ( TC 6 TPP ) FeONO 2, respectively. This results in low free energies of activation, Δ G 298‡ = 35(2) and 30(2) kJ.mol−1, respectively, indicating extremely high flexibility of the porphyrin core in solution (kex298 > 4.2 × 106 and 3.8 × 107 s−1).
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Affiliation(s)
- Liliya A. Yatsunyk
- Department of Chemistry, University of Arizona, Tucson, AZ 85721-0041, USA
| | - F. Ann Walker
- Department of Chemistry, University of Arizona, Tucson, AZ 85721-0041, USA
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Fritz BG, Hu X, Brailey JL, Berry RE, Walker FA, Montfort WR. Oxidation and loss of heme in soluble guanylyl cyclase from Manduca sexta. Biochemistry 2011; 50:5813-5. [PMID: 21639146 DOI: 10.1021/bi200794c] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Oxidation and loss of heme in soluble guanylyl/guanylate cyclase (sGC), the nitric oxide receptor, is thought to be a major contributor to cardiovascular disease and is the target of compounds BAY 58-2667 and HMR1766. Using spectroelectrochemical titration, we found a truncated sGC to be highly stable in the ferrous state (234 mV) and to bind ferrous heme tightly even in the presence of NO, despite the NO-induced release of the proximal histidine. In contrast, oxidized sGC readily loses ferric heme to myoglobin (0.47 ± 0.02 h(-1)). Peroxynitrite, the presumed cellular oxidant, readily oxidizes sGC in 5 mM glutathione.
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Affiliation(s)
- Bradley G Fritz
- Department of Chemistry and Biochemistry, University of Arizona, Tucson, Arizona 85721, United States
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16
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Korendovych IV, Senes A, Kim YH, Lear JD, Fry HC, Therien MJ, Blasie JK, Walker FA, Degrado WF. De novo design and molecular assembly of a transmembrane diporphyrin-binding protein complex. J Am Chem Soc 2011; 132:15516-8. [PMID: 20945900 DOI: 10.1021/ja107487b] [Citation(s) in RCA: 101] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
The de novo design of membrane proteins remains difficult despite recent advances in understanding the factors that drive membrane protein folding and association. We have designed a membrane protein PRIME (PoRphyrins In MEmbrane) that positions two non-natural iron diphenylporphyrins (Fe(III)DPP's) sufficiently close to provide a multicentered pathway for transmembrane electron transfer. Computational methods previously used for the design of multiporphyrin water-soluble helical proteins were extended to this membrane target. Four helices were arranged in a D(2)-symmetrical bundle to bind two Fe(II/III) diphenylporphyrins in a bis-His geometry further stabilized by second-shell hydrogen bonds. UV-vis absorbance, CD spectroscopy, analytical ultracentrifugation, redox potentiometry, and EPR demonstrate that PRIME binds the cofactor with high affinity and specificity in the expected geometry.
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Affiliation(s)
- Ivan V Korendovych
- Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
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17
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Yang F, Shokhireva TK, Walker FA. Linear correlation between 1H and 13C chemical shifts of ferriheme proteins and model ferrihemes. Inorg Chem 2011; 50:1176-83. [PMID: 21244013 DOI: 10.1021/ic1020274] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The (1)H{(13)C} HMQC experiment at natural-abundance (13)C provides a very useful way of determining not only (1)H but also (13)C chemical shifts of most heme substituents, without isotopic labeling of the hemin. This is true both in model low-spin ferriheme complexes and in low-spin ferriheme proteins, even when the proton resonances are buried in the protein diamagnetic region, because the carbon shifts are much larger than the proton shifts. In addition, in many cases, the protohemin methyl cross peaks are fairly linearly related to each other, with the slope of the correlation, δ(C)/δ(H), being approximately -2.0 for most low-spin ferriheme proteins. The reasons why this should be the case, and when it is not, are discussed.
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Affiliation(s)
- Fei Yang
- Department of Chemistry and Biochemistry, The University of Arizona, P.O. Box 210041, Tucson, Arizona 85721-0041, United States
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18
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Hocking RK, DeBeer George S, Gross Z, Walker FA, Hodgson KO, Hedman B, Solomon EI. Fe L- and K-edge XAS of low-spin ferric corrole: bonding and reactivity relative to low-spin ferric porphyrin. Inorg Chem 2010; 48:1678-88. [PMID: 19149467 DOI: 10.1021/ic802248t] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Corrole is a tetrapyrrolic macrocycle that has one carbon atom less than a porphyrin. The ring contraction reduces the symmetry from D(4h) to C(2v), changes the electronic structure of the heterocycle, and leads to a smaller central cavity with three protons rather than the two of a porphyrin. The differences between ferric corroles and porphyrins lead to a number of differences in reactivity including increased axial ligand lability and a tendency to form 5-coordinate complexes. The electronic structure origin of these differences has been difficult to study experimentally as the dominant porphyrin/corrole pi --> pi* transitions obscure the electronic transitions of the metal. Recently, we have developed a methodology that allows for the interpretation of the multiplet structure of Fe L-edges in terms of differential orbital covalency (i.e., the differences in mixing of the metal d orbitals with the ligand valence orbitals) using a valence bond configuration interaction model. Herein, we apply this methodology, combined with a ligand field analysis of the Fe K pre-edge to a low-spin ferric corrole, and compare it to a low-spin ferric porphyrin. The experimental results combined with DFT calculations show that the contracted corrole is both a stronger sigma donor and a very anisotropic pi donor. These differences decrease the bonding interactions with axial ligands and contribute to the increased axial ligand lability and reactivity of ferric corroles relative to ferric porphyrins.
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Affiliation(s)
- Rosalie K Hocking
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
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19
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Swails JM, Meng Y, Walker FA, Marti MA, Estrin DA, Roitberg AE. pH-dependent mechanism of nitric oxide release in nitrophorins 2 and 4. J Phys Chem B 2009; 113:1192-201. [PMID: 19159340 DOI: 10.1021/jp806906x] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Nitrophorins are NO carrier proteins that transport and release NO through a pH-dependent conformational change. They bind NO tightly in a low pH environment and release it in a higher pH environment. Experimental evidence shows that the increase in the NO dissociation equilibrium constant, K(d), is due mainly to an increase in the NO release rate. Structural and kinetic data strongly suggest that NPs control NO escape by modulating its migration from the active site to the solvent through a pH-dependent conformational change. NP2 and NP4 are two representative proteins of the family displaying a 39% overall sequence identity, and interestingly, NP2 releases NO slower than NP4. The proposal that NPs' NO release relies mainly on the NO escape rate makes NPs a very peculiar case among typical heme proteins. The connection between the pH-dependent conformational change and ligand release mechanism is not fully understood and the structural basis for the pH induced structural transition and the different NO release patterns in NPs are unresolved, yet interesting issues. In this work, we have used state of the art molecular dynamics simulations to study the NO escape process in NP2 and NP4 in both the low and high pH states. Our results show that both NPs modulate NO release by switching between a "closed" conformation in a low pH environment and an "open" conformation at higher pH. In both proteins, the change is caused by the differential protonation of a common residue Asp30 in NP4 and Asp29 in NP2, and the NO escape route is conserved. Finally, our results show that, in NP2, the conformational change to the "open" conformation is smaller than that for NP4 which results in a higher barrier for NO release.
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Affiliation(s)
- Jason M Swails
- Department of Chemistry, University of Florida, Gainesville, Florida 32611-8435, USA
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Berry RE, Shokhirev MN, Ho AYW, Yang F, Shokhireva TK, Zhang H, Weichsel A, Montfort WR, Walker FA. Effect of mutation of carboxyl side-chain amino acids near the heme on the midpoint potentials and ligand binding constants of nitrophorin 2 and its NO, histamine, and imidazole complexes. J Am Chem Soc 2009; 131:2313-27. [PMID: 19175316 PMCID: PMC2647857 DOI: 10.1021/ja808105d] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Nitrophorins (NPs) are a group of NO-carrying heme proteins found in the saliva of a blood-sucking insect from tropical Central and South America, Rhodnius prolixus, the "kissing bug". NO is kept stable for long periods of time by binding it as an axial ligand to a ferriheme center. The fact that the nitrophorins are stabilized as Fe(III)-NO proteins is a unique property because most heme proteins are readily autoreduced by excess NO and bind NO to the Fe(II) heme irreversibly (K(d)s in the picomolar range). In contrast, the nitrophorins, as Fe(III) heme centers, have K(d)s in the micromolar to nanomolar range and thus allow NO to dissociate upon dilution following injection into the tissues of the victim. This NO can cause vasodilation and thereby allow more blood to be transported to the site of the wound. We prepared 13 site-directed mutants of three major nitrophorins, NP2, NP1, and NP4, to investigate the stabilization of the ferric-NO heme center and preservation of reversible binding that facilitates these proteins' NO storage, transport, and release functions. Of the mutations in which Glu and/or Asp were replaced by Ala, most of these carboxyls show a significant role stabilizing Fe(III)-NO over Fe(II)-NO, with buried E53 of NP2 or E55 of NP1 and NP4 being the most important and partially buried D29 of NP2 or D30 of NP4 being second in importance. The pK(a)s of the carboxyl groups studied vary significantly but all are largely deprotonated at pH 7.5 except E124.
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Affiliation(s)
- Robert E. Berry
- Contribution from the Department of Chemistry and Biochemistry, The University of Arizona, PO Box 210041, Tucson, AZ 85721-0041
| | - Maxim N. Shokhirev
- Contribution from the Department of Chemistry and Biochemistry, The University of Arizona, PO Box 210041, Tucson, AZ 85721-0041
| | - Arthur Y. W. Ho
- Contribution from the Department of Chemistry and Biochemistry, The University of Arizona, PO Box 210041, Tucson, AZ 85721-0041
| | - Fei Yang
- Contribution from the Department of Chemistry and Biochemistry, The University of Arizona, PO Box 210041, Tucson, AZ 85721-0041
| | - Tatiana K. Shokhireva
- Contribution from the Department of Chemistry and Biochemistry, The University of Arizona, PO Box 210041, Tucson, AZ 85721-0041
| | - Hongjun Zhang
- Contribution from the Department of Chemistry and Biochemistry, The University of Arizona, PO Box 210041, Tucson, AZ 85721-0041
| | - Andrzej Weichsel
- Contribution from the Department of Chemistry and Biochemistry, The University of Arizona, PO Box 210041, Tucson, AZ 85721-0041
| | - William R. Montfort
- Contribution from the Department of Chemistry and Biochemistry, The University of Arizona, PO Box 210041, Tucson, AZ 85721-0041
| | - F. Ann Walker
- Contribution from the Department of Chemistry and Biochemistry, The University of Arizona, PO Box 210041, Tucson, AZ 85721-0041
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Murataliev MB, Guzov VM, Walker FA, Feyereisen R. P450 reductase and cytochrome b5 interactions with cytochrome P450: effects on house fly CYP6A1 catalysis. Insect Biochem Mol Biol 2008; 38:1008-15. [PMID: 18930820 PMCID: PMC2652843 DOI: 10.1016/j.ibmb.2008.08.007] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2008] [Revised: 08/31/2008] [Accepted: 08/31/2008] [Indexed: 05/11/2023]
Abstract
The interactions of protein components of the xenobiotic-metabolizing cytochrome P450 system, CYP6A1, P450 reductase, and cytochrome b5 from the house fly (Musca domestica) have been characterized. CYP6A1 activity is determined by the concentration of the CYP6A1-P450 reductase complex, regardless of which protein is present in excess. Both holo- and apo-b5 stimulated CYP6A1 heptachlor epoxidase and steroid hydroxylase activities and influenced the regioselectivity of testosterone hydroxylation. The conversion of CYP6A1 to its P420 form was decreased by the addition of apo-b5. The effects of cytochrome b5 may involve allosteric modification of the P450 enzyme that modify the conformation of the active site. The overall stoichiometry of the P450 reaction was substrate-dependent. High uncoupling of CYP6A1 was observed with generation of hydrogen peroxide, in excess over the concomitant testosterone hydroxylation or heptachlor epoxidation. Inclusion of cytochrome b5 in the reconstituted system improved efficiency of oxygen consumption and electron utilization from NADPH, or coupling of the P450 reaction. Depending on the reconstitution conditions, coupling efficiency varied from 8 to 25% for heptachlor epoxidation, and from 11 to 70% for testosterone hydroxylation. Because CYP6A1 is a P450 involved in insecticide resistance, this suggests that xenobiotic metabolism by constitutively overexpressed P450s may be linked to significant oxidative stress in the cell that may carry a fitness cost.
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Affiliation(s)
- Marat B. Murataliev
- Department of Entomology, University of Arizona, Tucson, AZ 85721
- Department of Chemistry, University of Arizona, Tucson, AZ 85721
| | - Victor M. Guzov
- Department of Entomology, University of Arizona, Tucson, AZ 85721
| | - F. Ann Walker
- Department of Chemistry, University of Arizona, Tucson, AZ 85721
| | - René Feyereisen
- Department of Entomology, University of Arizona, Tucson, AZ 85721
- UMR INRA- CNRS- Université de Nice Sophia Antipolis, 06903 Sophia Antipolis, France
- corresponding author: E-mail address: (R.Feyereisen)
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Shokhireva TK, Shokhirev NV, Berry RE, Zhang H, Walker FA. Assignment of the ferriheme resonances of high- and low-spin forms of the symmetrical hemin-reconstituted nitrophorins 1-4 by 1H and 13C NMR spectroscopy: the dynamics of heme ruffling deformations. J Biol Inorg Chem 2008; 13:941-59. [PMID: 18458965 DOI: 10.1007/s00775-008-0381-8] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2008] [Accepted: 04/13/2008] [Indexed: 10/22/2022]
Abstract
The four major nitrophorins (NPs) of the adult blood-sucking insect Rhodnius prolixus have been reconstituted with the "symmetrical hemin" 2,4-dimethyldeuterohemin, and their NMR spectra have been investigated as the high-spin (S=5/2) aqua and low-spin (S=1/2) N-methylimidazole (NMeIm) and cyanide complexes. The NMeIm complexes allow assignment of the high-spin hemin resonances by saturation transfer difference spectroscopy. The cyanide complexes were investigated as paramagnetic analogues of the NO complexes. It is shown that the hemin ring is highly distorted from planarity, much more so for NP2 than for NP1 and NP4 (with ruffling being the major distortion mode), for both high- and low-spin forms. For the cyanide complexes, the conformation of the distorted ring changes on the NMR timescale to yield chemical exchange (exchange spectroscopy, EXSY) cross peaks for NP1sym(CN), NP3sym(CN) and NP4sym(CN) but not for NP2sym(CN). These changes in nonplanar conformation are visualized as a "rolling" of the ruffled macrocycle ridges through some number of degrees, the lowest-energy ruffling mode. This probably occurs in response to slow protein dynamics that cause the I120 and L132 side chains in the distal heme pocket to move in opposite directions (up and away vs. down and toward the hemin ring). This in turn changes the out-of-plane displacements of the 2M and 3M of the symmetrical hemin on the NMR timescale. Two other types of dynamics, i.e., changes in heme seating and NMeIm rotation, are also observed. The highly distorted heme and the dynamics it causes are unique to the NPs and a few other heme proteins with highly distorted macrocycles.
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Chen CKJ, Shokhireva TK, Berry RE, Zhang H, Walker FA. The effect of mutation of F87 on the properties of CYP102A1-CYP4C7 chimeras: altered regiospecificity and substrate selectivity. J Biol Inorg Chem 2008; 13:813-24. [PMID: 18392864 DOI: 10.1007/s00775-008-0368-5] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2007] [Accepted: 03/20/2008] [Indexed: 11/25/2022]
Abstract
CYP102A1 is a highly active water-soluble bacterial monooxygenase that contains both substrate-binding heme and diflavin reductase subunits, all in a single polypeptide that has been called a "self-sufficient enzyme." Several years ago we developed a procedure called "scanning chimeragenesis," where we focused on residues 73-82 of CYP102A1, which contact approximately 40% of the substrates palmitoleic acid and N-palmitoylglycine [Murataliev et al. (2004) Biochemistry 43:1771-1780]. These residues were replaced with the homologous residues of CYP4C7. In the current work, that study has been expanded to include residue 87. Phenylalanine 87 of wild-type CYP102A1 was replaced with the homologous residue of CYP4C7, leucine, as well as with alanine. The full-sized chimeric proteins C(73-78, F87L), C(73-78, F87A), C(75-80, F87L), C(75-80, F87A), C(78-82, F87L) and C(78-82, F87A) have been purified and characterized. Wild-type CYP102A1 is most active toward fatty acids (both lauric and palmitic acids produce omega-1, omega-2, and omega-3 hydroxylated fatty acids), but it also catalyzes the oxidation of farnesol to three products (2, 3- and 10,11-epoxyfarnesols and 9-hydroxyfarnesol). All of the F87-mutant chimeric proteins show dramatic decreases in activities with the natural CYP102A1 substrates. In contrast, C(78-82, F87A) and C(78-82, F87L) have markedly increased activities with farnesol, with the latter showing a 5.7-fold increase in catalytic activity as compared to wild-type CYP102A1. C(78-82, F87L) produces 10,11-epoxyfarnesol as the single primary metabolite. The results show that chimeragenesis involving only the second half of SRS-1 plus F87 is sufficient to change the substrate selectivity of CYP102A1 from fatty acids to farnesol and to produce a single primary product.
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Shokhireva TK, Berry RE, Zhang H, Shokhirev NV, Walker FA. Assignment of Ferriheme Resonances for High- and Low-Spin Forms of Nitrophorin 3 by H and C NMR Spectroscopy and Comparison to Nitrophorin 2: Heme Pocket Structural Similarities and Differences. Inorganica Chim Acta 2008; 361:925-940. [PMID: 19262680 PMCID: PMC2390817 DOI: 10.1016/j.ica.2007.05.044] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Nitrophorin 3 (NP3) is the only one of the four major NO-binding heme proteins found in the saliva of the blood-sucking insect Rhodnius prolixus (also called the Kissing Bug) for which it has not been possible to obtain crystals of diffraction quality for structure determination by X-ray crystallography. Thus we have used NMR spectroscopy, mainly of the hyperfine-shifted ferriheme substituent resonances, to learn about the similarities and differences in the heme pocket and the iron active site of NP3 as compared to NP2, which has previously been well-characterized by both X-ray crystallography and NMR spectroscopy. Only one residue in the heme pocket differs between the two, F27 of NP2 is Y27 for NP3; in both cases this residue is expected to interact strongly with the 2-vinyl side chain of the B heme rotational isomer or the 4-vinyl of the A heme rotational isomer. Both the high-spin (S = 5/2) aquo complex, NP3-H(2)O, and the low-spin (S = 1/2) N-methylimidazole (NMeIm) complex of NP3 have been studied. It is found that the chemical shifts of the protons of both forms are similar to those of the corresponding NP2 complexes, but with minor differences that indicate a slightly different angle for the proximal histidine (H57) ligand plane. The B heme rotational isomer is preferred by both NP3 and NP2 in both spin states, but to a greater extent when phenylalanine is present at position 27 (A:B = 1:8 for NP2, 1:6 for NP3-Y27F, 1:4 for NP3, and 1:3 for NP2-F27Y). Careful analysis of the 5Me and 8Me shifts of the A and B isomers of the two high-spin nitrophorins leads to the conclusion that the heme environment for the two isomers differs in some way that cannot be explained at the present time. The kinetics of deprotonation of the high-spin complexes of NP2 and NP3 are very different, with NP2 giving well-resolved high-spin aquo and "low-spin" hydroxo proton NMR spectra until close to the end of the titration, while NP3 exhibits broadened (1)H NMR spectra indicative of an intermediate rate of exchange on the NMR timescale between the two forms throughout the titration. The heme methyl shifts of NP2-OH are similar in magnitude and spread to those of NP2-CN, while those of metmyoglobin-hydroxo complexes are much larger in magnitude but not spread. It is concluded that the hydroxo complex of NP2 is likely S = 1/2 with a mixed (d(XY))(2)(d(XZ),d(YZ))(3)/(d(xy))(1)(d(xz),d(yz))(4) electron configuration, while those of met-Mb-OH are likely S = 1/2,3/2 mixed spin systems.
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Affiliation(s)
- Tatiana Kh Shokhireva
- Contribution from the Department of Chemistry, The University of Arizona, Tucson, AZ 85721-0041
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Knipp M, Yang F, Berry RE, Zhang H, Shokhirev MN, Walker FA. Spectroscopic and functional characterization of nitrophorin 7 from the blood-feeding insect Rhodnius prolixus reveals an important role of its isoform-specific N-terminus for proper protein function. Biochemistry 2007; 46:13254-68. [PMID: 17958381 PMCID: PMC2529253 DOI: 10.1021/bi7014986] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Nitrophorins (NPs) are a class of NO-transporting and histamine-sequestering heme b proteins that occur in the saliva of the bloodsucking insect Rhodnius prolixus. A detailed study of the newly described member, NP7, is presented herein. NO association constants for NP7 [KIII(eq)(NO)] reveal a drastic change when the pH is varied from 5.5 (reflecting the insect's saliva) to slightly above plasma pH (7.5) (>10(9) M-1 --> 4.0 x 10(6) M-1); thus, the protein promotes the storage of NO in the insect's saliva and its release inside the victim's tissues. In contrast to the other nitrophorins, NP1-4, histamine sequestering cannot be accomplished in vivo due to the low binding constant [KIII(eq)(histamine)] of 10(5) M-1 compared to the histamine concentration of 1-10 x 10(-9) M in the blood. A major part of this study deals with the N-terminus, 1Leu-Pro-Gly-Glu-Cys5 of NP7, which is not found in NP1-4. Since NP7 has not been isolated from the insects but was recognized in a cDNA library instead, the N-terminal site of signal peptidase cleavage upon protein secretion was predicted by the program SIGNALP [Andersen, J. F., Gudderra, N. P., Francischetti, I. M. B., Valenzuela, J. G., and Ribeiro, J. M. C. (2004) Biochemistry 43, 6987-6994]. In marked contrast to wild-type NP7, NP7(Delta1-3) exhibits a very high NO affinity at pH 7.5 [KIII(eq)(NO) approximately 10(9) M-1], suggesting that the release of NO in the plasma cannot efficiently be accomplished by the truncated form. Comparison of the reduction potentials of both constructs by spectroelectrochemistry revealed an average increase of +85 mV for various distal ligands bound to the heme iron when the 1Leu-Pro-Gly3 peptide was removed. However, 1H NMR and EPR spectroscopy show that the electronic properties of the FeIII cofactor are similar in both wild-type NP7 and NP7(Delta1-3). Further, thermal denaturation that revealed a higher stability of wild-type NP7 compared to NP7(Delta1-3), in combination with a homology model based on the NP2 crystal structure (rmsd = 0.39 A), suggests that interaction of the 1Leu-Pro-Gly3 peptide with the A-B and/or G-H loops is key for proper protein function.
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Affiliation(s)
- Markus Knipp
- Department of Chemistry, The University of Arizona, 1306 East University Boulevard, Tucson, Arizona 85721-0041, USA.
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Abstract
The 1H NMR spectra of a series of mono- and dinuclear pyridine complexes [FeL1(R1/R2)(py)2] and [Fe2L2(R1/R2)(py)4] have been investigated in a mixed toluene-d8/pyridine-d5 solution. The equatorial tetradentade Schiff base like ligands L1(R1/R2) and L2(R1/R2) with a N2O22- coordination sphere for each metal center have been obtained by condensation of a substituted malonodialdehyde (R1/R2 are Me/COOEt, Me/COMe, or OEt/COOEt) with o-phenylenediamine (L1(R1/R2)) or 1,2,4,5-tetraaminobenzene (L2(R1/R2)). The 1H NMR resonances were assigned by comparison of differently substituted complexes in combination with a line-width comparison. The 1H NMR shifts from 188 to 358 K show a strong influence of the spin state of the iron center. The behavior of the pure high-spin iron(II) complexes is close to ideal Curie behavior. Analysis of the resonance shifts of the spin-transition complexes can be used for determining the high-spin mole fraction of the complex in solution at different temperatures. Magnetic susceptibility measurements in solution using the Evans method were made for all six complexes. Significant differences between the spin-transition behavior of the complexes in solution of those in the solid state were found. However, the plots of microeff as a function of temperature obtained using the Evans method and those obtained by interpretation of the NMR shifts were virtually identical. The isotropic shifts of protons in the complexes proved to be suitable tools for following a spin transition in solution. Comparison of the microeff plots of the mono- and dinuclear complexes in solution reveals slight differences between the steepness of the curves that may be attributable to cooperative interactions between the metal centers in the case of the dinuclear complexes.
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Affiliation(s)
- Birgit Weber
- Department of Chemistry and Biochemistry, Ludwig Maximilian University Munich, Butenandtstrasse 5-13 (Haus D), München, Germany.
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Berry RE, Shokhireva TK, Filippov I, Shokhirev MN, Zhang H, Walker FA. Effect of the N-terminus on heme cavity structure, ligand equilibrium, rate constants, and reduction potentials of nitrophorin 2 from Rhodnius prolixus. Biochemistry 2007; 46:6830-43. [PMID: 17506528 PMCID: PMC2518688 DOI: 10.1021/bi7002263] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The D1A mutant of recombinant NP2 has been prepared and shown to have the expression-initiation methionine-0 cleaved during expression in E. coli, as is the case for recombinant NP4, where Ala is the first amino acid for the recombinant protein as well as for the mature native protein. The heme substituent 1H NMR chemical shifts of NP2-D1A and those of its imidazole, N-methylimidazole, and cyanide complexes are rather different from those of NP2-M0D1. This difference is likely due to the much smaller size of the N-terminal amino acid (A) of NP2-D1A, which allows the formation of the closed loop form of this protein, as it does for NP4 (Weichsel, A., Andersen, J. F., Roberts, S. A., and Montfort, W. R. (2000) Nature Struct. Biol. 7, 551-554). The ratio of the two hemin rotational isomers A and B is different for the two proteins, and the rate at which the A:B ratio reaches equilibrium is strikingly different (NP2-M0D1 t1/2 for heme rotation approximately 2 h, NP2-D1A t1/2 approximately 43 h). This difference is consistent with the high stability of the closed loop form of the NP2-D1A protein and infrequent opening of the loops that could allow heme to at least partially exit the binding pocket in order to rotate about its alpha,gamma-meso axis. Consistent with this, the rates of histamine binding and release to/from NP2-D1A are significantly slower than those for NP2-M0D1 at pH 7.5. This work suggests that care must be taken in interpreting data obtained from proteins that carry the expression-initiation M0.
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Affiliation(s)
- Robert E Berry
- Department of Chemistry, The University of Arizona, P.O. Box 210041, Tucson, Arizona 85721-0041, USA
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Yatsunyk LA, Dawson A, Carducci MD, Nichol GS, Walker FA. Models of the cytochromes: crystal structures and EPR spectral characterization of low-spin bis-imidazole complexes of (OETPP)Fe(III) having intermediate ligand plane dihedral angles. Inorg Chem 2007; 45:5417-28. [PMID: 16813405 DOI: 10.1021/ic060283h] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The preparation, EPR spectra, and crystal structures of octaethyltetraphenylporphyrinatoiron(III) having two imidazole, N-benzylimidazole, and N-methylimidazole axial ligands are reported, [(OETPP)Fe(HIm)2]Cl, [(OETPP)Fe(N-BzIm)2]Cl, and [(OETPP)Fe(N-MeIm)2]Cl. Despite large variation in axial ligand size, the unit cell parameters for all complexes are very similar; each structure has the same basic motif, with large voids formed by the extended porphyrin framework (filled by ordered or disordered axial ligands and disordered solvent), which allows differently sized ligands to fit within the same cell dimensions. Each porphyrin core adopts a saddled conformation with absolute value(deltaC(beta)) = 1.13-1.15 A. The dihedral angles between axial ligand planes, delta phi, are far from being either ideal parallel or perpendicular: 30.1 degrees, 57.2 degrees for [(OETPP)Fe(HIm)2]Cl (molecules 1 and 2), 56.8 degrees for [(OETPP)Fe(N-BzIm)(2)]Cl, and 16.0 degrees, 44.6 degrees, 59.6 degrees, and 88.1 degrees for [(OETPP)Fe(N-MeIm)2]Cl, which has disordered axial ligands. Among the complexes of this study, an axial ligand delta phi of 56.8 degrees is found to be the largest "parallel" angle (as defined by the observation of a normal rhombic or Type II EPR signal (N-BzIm, g = 3.08, 2.19, 1.31)), while 57.2 degrees is found to be the smallest "perpendicular" delta phi (as defined by the observation of a "large gmax" or Type I EPR signal (HIm, gmax = 3.24)). From the results of this study, it is clear that the size of the largest g for Types I and II complexes varies continuously, with no break between the two. While the switch in EPR signal type, from Type II to Type I, appears to be very sharp in this study, this may be somewhat artificial based upon limited numbers of examples and the required saddle distortion of the (OETPP)Fe(III) complexes. However, in comparison to several proteins with dihedral angles near 60 degrees and Type II EPR spectra, we may conclude that the switch in EPR signal type occurs near 57 degrees +/- 3-5 degrees.
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Affiliation(s)
- Liliya A Yatsunyk
- Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041, USA
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Knipp M, Zhang H, Berry RE, Walker FA. Overexpression in Escherichia coli and functional reconstitution of the liposome binding ferriheme protein nitrophorin 7 from the bloodsucking bug Rhodnius prolixus. Protein Expr Purif 2007; 54:183-91. [PMID: 17428677 PMCID: PMC2094717 DOI: 10.1016/j.pep.2007.02.017] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2007] [Revised: 02/23/2007] [Accepted: 02/24/2007] [Indexed: 11/21/2022]
Abstract
A number of ferriheme proteins, termed nitrophorins (NPs), occur in the saliva of the bloodsucking insect Rhodnius prolixus ('kissing bug'), which is a vector for Chagas' disease. Nitrophorins bind the heme b cofactor in the beta-barrel of their lipocalin fold, which is further anchored through a proximal histidine-Fe(III) bond. The distal Fe(III) coordination site then binds nitric oxide (NO) for delivery into a host's tissues during blood feeding, where, upon NO release, the distal Fe(III) site acts as a histamine trap to delay the victim's immune response. Previously, four nitrophorins from R. prolixus, NP1 to NP4, have been extensively characterized. Recently, another nitrophorin, NP7, was discovered in a cDNA library derived from the same insect. Among the R. prolixus nitrophorins, NP7 was found to be unique in its ability to bind to negatively charged cell surfaces. However, the yield of functional recombinant NP7 was rather low when the established protocol for NP1-4 was followed. Here, we report on a novel expression and reconstitution method for NP7 that yields sufficient amounts of pure protein for extensive characterization (28-fold increase). This method may prove useful for the reconstitution of other proteins with a lipocalin fold.
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Affiliation(s)
- Markus Knipp
- Department of Chemistry, University of Arizona, 1306 East University Boulevard, Tucson, AZ 85721-0041, USA
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Shokhireva TK, Weichsel A, Smith KM, Berry RE, Shokhirev NV, Balfour CA, Zhang H, Montfort WR, Walker FA. Assignment of the ferriheme resonances of the low-spin complexes of nitrophorins 1 and 4 by (1)H and (13)C NMR spectroscopy: comparison to structural data obtained from X-ray crystallography. Inorg Chem 2007; 46:2041-56. [PMID: 17290983 PMCID: PMC2587420 DOI: 10.1021/ic061408l] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
In this work we report the assignment of the majority of the ferriheme resonances of low-spin nitrophorins (NP) 1 and 4 and compare them to those of NP2, published previously. It is found that the structure of the ferriheme complexes of NP1 and NP4, in terms of the orientation of the ligand(s), can be determined with good accuracy by NMR techniques in the low-spin forms and that angle plots proposed previously (Shokhirev, N. V.; Walker, F. A. J. Biol. Inorg. Chem. 1998, 3, 581-594) describe the angle of the effective nodal plane of the axial ligands in solution. The effective nodal plane of low-spin NP1, NP4, and NP2 complexes is in all cases of imidazole and histamine complexes quite similar to the average of the His-59 or -57 and the exogenous ligand angles seen in the X-ray crystal structures. For the cyanide complexes of the nitrophorins, however, the effective nodal plane of the axial ligand does not coincide with the actual histidine-imidazole plane orientation. This appears to be a result of the contribution of an additional source of asymmetry, the orientation of one of the zero-ruffling lines of the heme. Probably this effect exists for the imidazole and histamine complexes as well, but because the effect of asymmetry that occurs from planar exogenous axial ligands is much larger than the effect of heme ruffling the effect of the zero-ruffling line can only be detected for the cyanide complexes, where the only ligand plane is that of the proximal histidine. The three-dimensional structures of the three NP-CN complexes, including that of NP2-CN reported herein, confirm the high degree of ruffling of these complexes. There is an equilibrium between the two heme orientations (A and B) that depends on the heme cavity shape and changes somewhat with exogenous axial ligand. The A:B ratio can be much more accurately measured by NMR spectroscopy than by X-ray crystallography.
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Affiliation(s)
- Tatiana Kh Shokhireva
- Department of Chemistry and Biochemistry, The University of Arizona, Tucson, Arizona 85721, USA
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Hocking RK, Wasinger EC, Yan YL, Degroot FMF, Walker FA, Hodgson KO, Hedman B, Solomon EI. Fe L-edge X-ray absorption spectroscopy of low-spin heme relative to non-heme Fe complexes: delocalization of Fe d-electrons into the porphyrin ligand. J Am Chem Soc 2007; 129:113-25. [PMID: 17199290 PMCID: PMC2890250 DOI: 10.1021/ja065627h] [Citation(s) in RCA: 114] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Hemes (iron porphyrins) are involved in a range of functions in biology, including electron transfer, small-molecule binding and transport, and O2 activation. The delocalization of the Fe d-electrons into the porphyrin ring and its effect on the redox chemistry and reactivity of these systems has been difficult to study by optical spectroscopies due to the dominant porphyrin pi-->pi(*) transitions, which obscure the metal center. Recently, we have developed a methodology that allows for the interpretation of the multiplet structure of Fe L-edges in terms of differential orbital covalency (i.e., differences in mixing of the d-orbitals with ligand orbitals) using a valence bond configuration interaction (VBCI) model. Applied to low-spin heme systems, this methodology allows experimental determination of the delocalization of the Fe d-electrons into the porphyrin (P) ring in terms of both P-->Fe sigma and pi-donation and Fe-->P pi back-bonding. We find that pi-donation to Fe(III) is much larger than pi back-bonding from Fe(II), indicating that a hole superexchange pathway dominates electron transfer. The implications of the results are also discussed in terms of the differences between heme and non-heme oxygen activation chemistry.
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Affiliation(s)
- Rosalie K Hocking
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
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Shokhireva TK, Smith KM, Berry RE, Shokhirev NV, Balfour CA, Zhang H, Walker FA. Assignment of the ferriheme resonances of the high-spin forms of nitrophorins 1 and 4 by 1H NMR spectroscopy: comparison to structural data obtained from X-ray crystallography. Inorg Chem 2007; 46:170-8. [PMID: 17198425 PMCID: PMC2518634 DOI: 10.1021/ic061407t] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
In this work, we report the assignment of the majority of the ferriheme resonances of high-spin nitrophorins (NPs) 1 and 4 and compare them to those of NP2, published previously. It is found that the structures of the ferriheme complexes of NP1 and NP4, in terms of the orientation of the histidine imidazole ligand, can be described with good accuracy by NMR techniques and that the angle plot proposed previously for the high-spin form of the NPs (Shokhireva, T. Kh.; Shokhirev, N. V.; Walker, F. A. Biochemistry 2003, 42, 679-693) describes the angle of the effective nodal plane of the axial histidine imidazole in solution. There is an equilibrium between the two heme orientations (A and B), which depends on the heme cavity shape, which can be altered by mutation of amino acids with side chains (phenyl vs tyrosyl) near the potential position where a heme vinyl group would be in one of the isomers. The A:B ratio can be much more accurately measured by NMR spectroscopy than by X-ray crystallography.
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Nardis S, Paolesse R, Licoccia S, Fronczek FR, Vicente MGH, Shokhireva TK, Cai S, Walker FA. NMR and structural investigations of a nonplanar iron corrolate: modified patterns of spin delocalization and coupling in a slightly saddled chloroiron(III) corrolate radical. Inorg Chem 2006; 44:7030-46. [PMID: 16180865 DOI: 10.1021/ic0504846] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
An undecasubstituted chloroiron corrolate, octamethyltriphenylcorrolatoiron chloride, (OMTPCorr)FeCl, has been synthesized and studied by X-ray crystallography and (1)H and (13)C NMR spectroscopy. It is found that, although the structure is slightly saddled, the average methyl out-of-plane distance is only 0.63 Angstroms, while it is much greater for the dodecasubstituted porphyrinate analogue (OMTPP)FeCl (1.19 Angstroms) (Cheng, R.-J.; Chen, P.-Y.; Gau, P.-R.; Chen, C.-C.; Peng, S.-M. J. Am. Chem. Soc. 1997, 119, 2563-2569). In addition, the distance of iron from the mean plane of the four macrocycle nitrogens is also smaller for (OMTPCorr)FeCl (0.387 Angstroms) than for (OMTPP)FeCl (0.46 Angstroms). The (1)H and (13)C NMR spectra of (OMTPCorr)FeCl, as well as the chloroiron complexes of triphenylcorrolate, (TPCorr)FeCl; 7,13-dimethyl-2,3,8,12,17,18-hexaethylcorrolate, (DMHECorr)FeCl; 7,8,12,13-tetramethyl-2,3,17,18-tetraethylcorrolate, (TMTECorr)FeCl; and the phenyliron complex of 7,13-dimethyl-2,3,8,12,17,18-hexaethylcorrolate, (DMHECorr)FePh, have been assigned, and the spin densities at the carbons that are part of the aromatic ring of the corrole macrocycle have been divided into the part due to spin delocalization by corrole --> Fe pi donation and the part due to the unpaired electron present on the corrole ring. It is found that although the spin density at the beta-pyrrole positions is fairly similar to that of (TPCorr)FeCl, the meso-phenyl-carbon shift differences delta(m) - delta(p) are opposite in sign of those of (TPCorr)FeCl. This finding suggests that the radical electron is ferromagnetically coupled to the unpaired electrons on iron, rather than antiferromagnetically coupled, as in all of the other chloroiron corrolates. The solution magnetic moment was measured for (OMTPCorr)FeCl and found to be mu(eff) = 4.7 +/- 0.5 micro(B), consistent with S = 2 and ferromagnetic coupling. From this study, two conclusions may be reached about iron corrolates: (1) the spin states of chloroiron corrolates are extremely sensitive to the out-of-plane distance of iron, and (2) pyrrole-H or -C shifts are not useful in delineating the spin state and electron configuration of (anion)iron corrolates.
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Affiliation(s)
- Sara Nardis
- Dipartimento di Scienze e Tecnologie Chimiche, Università di Roma Tor Vergata, Italy
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Cai S, Shokhireva TK, Lichtenberger DL, Walker FA. NMR and EPR studies of chloroiron(III) tetraphenyl-chlorin and its complexes with imidazoles and pyridines of widely differing basicities. Inorg Chem 2006; 45:3519-31. [PMID: 16634582 PMCID: PMC2504473 DOI: 10.1021/ic0515352] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The NMR and EPR spectra of two bisimidazole and three bispyridine complexes of tetraphenylchlorinatoiron(III), [(TPC)Fe(L)2]+ (L = Im-d4, 2-MeHIm, 4-Me2NPy, Py, and 4-CNPy), have been investigated. The full resonance assignments of the [(TPC)Fe(L)2]+ complexes of this study have been made from correlation spectroscopy (COSY) and nuclear Overhauser enhancement spectroscopy (NOESY) experiments and Amsterdam density functional (ADF) calculations. Unlike the [(OEC)Fe(L)2]+ complexes reported previously (Cai, S.; Lichtenberger, D. L.; Walker, F. A. Inorg. Chem. 2005, 44, 1890-1903), the NMR data for the [(TPC)Fe(L)2]+ complexes of this study indicate that the ground state is S = 1/2 for each bisligand complex, whereas a higher spin state was present at NMR temperatures for the Py and 4-CNPy complexes of (OEC)Fe(III). The pyrrole-8,17 and pyrroline-H of all [TPCFe(L)2]+ show large magnitude chemical shifts (hence indicating large spin density on the adjacent carbons that are part of the pi system), while pyrrole-12,13-CH2 and -7,18-CH2 protons show much smaller chemical shifts, as predicted by the spin densities obtained from ADF calculations. The magnitude of the chemical shifts decreases with decreasing donor ability of the substituted pyridine ligands, with the nonhindered imidazole ligand having slightly larger magnitude chemical shifts than the most basic pyridine, even though its basicity is significantly lower (4-Me2NPyH+ pKa = 9.7, H2Im+ pKa = 6.65 (adjusted for the statistical factor of 2 protons)). The temperature dependence of the chemical shifts of all but the 4-Me2NPy bisligand complexes studied over the temperature range of the NMR investigations shows that they have mixed (dxy)2(dxz,dyz)3/(dxzdyz)4(dxy)1 electron configurations that cannot be resolved by temperature-dependent fitting of the proton chemical shifts, with an S = 3/2 excited state in each case that in most cases lies at more than kT at room temperature above the ground state. The observed pattern of chemical shifts of the 4-CNPy complex and analysis of the temperature dependence indicate that it has a pure (dxzdyz)4(dxy)1 ground state and that it is ruffled, because ruffling mixes the a(2u)(pi)-like orbital of the chlorin into the singly occupied molecular orbital (SOMO). This mixing accounts for the negative chemical shift of the pyrroline-H (-6.5 ppm at -40 degrees C) and thus the negative spin density at the pyrroline-alpha-carbons, but the mixing is not to the same extent as observed for [(TPC)Fe(t-BuNC)2]+, whose pyrroline-H chemical shift is -36 ppm at 25 degrees C (Simonneaux, G.; Kobeissi, M. J. Chem. Soc., Dalton Trans. 2001, 1587-1592). Peak assignments for high-spin (TPC)FeCl have been made by saturation transfer techniques that depend on chemical exchange between this complex and its bis-4-Me2NPy adduct.
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Affiliation(s)
- Sheng Cai
- Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041, USA
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Teschner T, Yatsunyk L, Schünemann V, Paulsen H, Winkler H, Hu C, Scheidt WR, Walker FA, Trautwein AX. Models of the membrane-bound cytochromes: mössbauer spectra of crystalline low-spin ferriheme complexes having axial ligand plane dihedral angles ranging from 0 degree to 90 degrees. J Am Chem Soc 2006; 128:1379-89. [PMID: 16433558 PMCID: PMC1525297 DOI: 10.1021/ja056343k] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Crystalline samples of four low-spin Fe(III) octaalkyltetraphenylporphyrinate and two low-spin Fe(III) tetramesitylporphyrinate complexes, all of which are models of the bis-histidine-coordinated cytochromes of mitochondrial complexes II, III, and IV and chloroplast complex b(6)f, and whose molecular structures and EPR spectra have been reported previously, have been investigated in detail by Mössbauer spectroscopy. The six complexes and the dihedral angles between axial ligand planes of each are [(TMP)Fe(1-MeIm)(2)]ClO(4) (0 degree), paral-[(OMTPP)Fe(1-MeIm)(2)]Cl (19.5 degrees), paral-[(TMP)Fe(5-MeHIm)(2)]ClO(4) (26 degrees, 30 degrees for two molecules in the unit cell whose EPR spectra overlap), [(OETPP)Fe(4-Me(2)NPy)(2)]Cl (70 degrees), perp-[(OETPP)Fe(1-MeIm)(2)]Cl (73 degrees), and perp-[(OMTPP)Fe(1-MeIm)(2)]Cl (90 degrees). Of these, the first three have been shown to exhibit normal rhombic EPR spectra, each with three clearly resolved g-values, while the last three have been shown to exhibit "large g(max)" EPR spectra at 4.2 K. It is found that the hyperfine coupling constants of the complexes are consistent with those reported previously for low-spin ferriheme systems, with the largest-magnitude hyperfine coupling constant, A(zz), being considerably smaller for the "parallel" complexes (400-540 kG) than for the strictly perpendicular complex (902 kG), A(xx) being negative for all six complexes, and A(zz) and A(xx) being of similar magnitude for the "parallel" complexes (for example, for [(TMP)Fe(1-MeIm)(2)]Cl, A(zz) = 400 kG, A(xx) = -400 kG). In all cases, A(yy) is small but difficult to estimate with accuracy. With results for six structurally characterized model systems, we find for the first time qualitative correlations of g(zz), A(zz), and DeltaE(Q) with axial ligand plane dihedral angle Deltavarphi.
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Walker FA. The heme environment of mouse neuroglobin: histidine imidazole plane orientations obtained from solution NMR and EPR spectroscopy as compared with X-ray crystallography. J Biol Inorg Chem 2006; 11:391-7. [PMID: 16586113 DOI: 10.1007/s00775-006-0095-8] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2006] [Accepted: 02/22/2006] [Indexed: 12/16/2022]
Abstract
The 1H NMR chemical shifts of the heme methyl groups of the ferriheme complex of metneuroglobin (Du et al. in J. Am. Chem. Soc. 125:8080-8081, 2003) predict orientations of the axial histidine ligands (Shokhirev and Walker in J. Biol. Inorg. Chem. 3:581-594, 1998) that are not consistent with the X-ray data (Vallone et al. in Proteins Struct. Funct. Bioinf. 56:85-94, 2004), and the EPR spectrum (Vinck et al. in J. Am. Chem. Soc. 126:4516-4517, 2004) is only marginally consistent with these data. The reasons for these inconsistencies appear to be rooted in the high degree of aqueous solution exposure of the heme group and the fact that there are no strong hydrogen-bond acceptors for the histidine imidazole N-H protons provided by the protein. Similar inconsistencies may exist for other water-soluble heme proteins, and 1H NMR spectroscopy provides a simple means to verify whether the solution structure of the heme center is the same as or different from that in the crystalline state.
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Affiliation(s)
- F Ann Walker
- Department of Chemistry, The University of Arizona, PO Box 210041, Tucson, AZ 85721-0041, USA.
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Walker FA, Licoccia S, Paolesse R. Iron corrolates: Unambiguous chloroiron(III) (corrolate)2− π-cation radicals. J Inorg Biochem 2006; 100:810-37. [PMID: 16519943 DOI: 10.1016/j.jinorgbio.2006.01.038] [Citation(s) in RCA: 75] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2005] [Revised: 01/09/2006] [Accepted: 01/09/2006] [Indexed: 10/24/2022]
Abstract
The structures, electron configurations, magnetic susceptibilities, spectroscopic properties, molecular orbital energies and spin density distributions, redox properties and reactivities of iron corrolates having chloride, phenyl, pyridine, NO and other ligands are reviewed. It is shown that with one very strong donor ligand such as phenyl anion the electron configuration of the metal is d(4)S=1 Fe(IV) coordinated to a (corrolate)(3-) anion, while with one weaker donor ligand such as chloride or other halide, the electron configuration is d(5)S=3/2 Fe(III) coordinated to a (corrolate)(2-.) pi-cation radical, with antiferromagnetic coupling between the metal and corrolate radical electron. Many of these complexes have been studied by electrochemical techniques and have rich redox reactivity, in most cases involving two 1-electron oxidations and two 1-electron reductions, and it is not possible to tell, from the shapes of cyclic voltammetric waves, whether the electron is added or removed from the metal or the macrocycle; often infrared, UV-Vis, or EPR spectroscopy can provide this information. (1)H and (13)C NMR spectroscopic methods are most useful in delineating the spin state and pattern of spin density distribution of the complexes listed above, as would also be expected to be the case for the recently-reported formal Fe(V)O corrolate, if this complex were stable enough for characterization by NMR spectroscopy. Iron, manganese and chromium corrolates can be oxidized by iodosylbenzene and other common oxidants used previously with metalloporphyrinates to effect efficient oxidation of substrates. Whether the "resting state" form of these complexes, most generally in the case of iron [FeCl(Corr)], actually has the electron configuration Fe(IV)(Corr)(3-) or Fe(III)(Corr)(2-.) is not relevant to the high-valent reactivity of the complex.
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Affiliation(s)
- F Ann Walker
- Department of Chemistry, University of Arizona, 1306 E. University Blvd., Tucson, AZ 85721-0041, USA.
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Jacobsen NE, Kövér KE, Murataliev MB, Feyereisen R, Walker FA. Structure and stereochemistry of products of hydroxylation of human steroid hormones by a housefly cytochrome P450 (CYP6A1). Magn Reson Chem 2006; 44:467-74. [PMID: 16408315 DOI: 10.1002/mrc.1767] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
The structure and stereochemistry of nine steroid metabolites isolated in quantities ranging from 0.15 to 1.8 mg were determined using a variety of NMR techniques, including heteronuclear multiple bond correlation (HMBC) using broadband adiabatic 13C pulses and phase-sensitive data presentation. Testosterone, androstenedione and progesterone were oxidized with housefly cytochrome P450 6A1 enzyme reconstituted in vitro with housefly NADPH cytochrome P450 reductase and cytochrome b5. NMR analysis in CD3OD using a modified HMBC sequence as well as 2D heteronuclear single quantum correlation (HSQC), COSY and nuclear Overhauser and exchange spectroscopy (NOESY), combined with a detailed analysis of J couplings showed that hydroxylation occurs exclusively on the beta-face of the steroids, at positions 2, 12, and 15.
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Affiliation(s)
- Neil E Jacobsen
- Department of Chemistry, University of Arizona, Tucson, AZ 85721, USA.
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Watson CT, Cai S, Shokhirev NV, Walker FA. NMR and EPR Studies of Low-Spin Fe(III) Complexes of meso-Tetra-(2,6-Disubstituted Phenyl)Porphyrinates Complexed to Imidazoles and Pyridines of Widely Differing Basicities. Inorg Chem 2005; 44:7468-84. [PMID: 16212373 DOI: 10.1021/ic0507316] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A series of bis-axially ligated complexes of iron(III) tetramesitylporphyrin, TMPFe(III), tetra-(2,6-dibromophenyl)porphyrin, (2,6-Br2)4TPPFe(III), tetra-(2,6-dichlorophenyl)porphyrin, (2,6-Cl2)4TPPFe(III), tetra-(2,6-difluorophenyl)porphyrin, (2,6-F2)4TPPFe(III), and tetra-(2,6-dimethoxyphenyl)porphyrin, (2,6-(OMe)2)4TPPFe(III), where the axial ligands are 1-methylimidazole, 2-methylimidazole, and a series of nine substituted pyridines ranging in basicity from 4-(dimethylamino)pyridine (pK(a)(PyH(+)) = 9.70) to 3- and 4-cyanopyridine (pKa(PyH+) = 1.45 and 1.1, respectively), have been prepared and characterized by EPR and 1H NMR spectroscopy. The EPR spectra, recorded at 4.2 K, show "large g(max)", rhombic, or axial signals, depending on the iron porphyrinate and axial ligand, with the g(max) value decreasing as the basicity of the pyridine decreases, thus indicating a change in electron configuration from (d(xy))2(d(xz),d(yz)3 to (d(xz),d(yz))4(d(xy))1 through each series at this low temperature. Over the temperature range of the NMR investigations (183-313 K), most of the high-basicity pyridine complexes of all five iron(III) porphyrinates exhibit simple Curie temperature dependence of their pyrrole-H paramagnetic shifts and beta-pyrrole spin densities, rho(C) approximately 0.015-0.017, that are indicative of the S = 1/2 (d(xy))(2)(d(xz),d(yz))(3) electron configuration, while the temperature dependences of the pyrrole-H resonances of the lower-basicity pyridine complexes (pK(a)(PyH(+)) < 6.00) show significant deviations from simple Curie behavior which could be fit to an expanded version of the Curie law using a temperature-dependent fitting program developed in this laboratory that includes consideration of a thermally accessible excited state. In most cases, the ground state of the lower-basicity pyridine complexes is an S = 1/2 state with a mixed (d(xy))2(d(xz),d(yz))3/(d(xz),d(yz))4(d(xy))1 electron configuration, indicating that these two are so close in energy that they cannot be separated by analysis of the NMR shifts; however, for the TMPFe(III) complexes with 3- and 4-CNPy, the ground states were found to be fairly pure (d(xz),d(yz))4(d(xy))1 electron configurations. In all but one case of the intermediate- to low-basicity pyridine complexes of the five iron(III) porphyrinates, the excited state is found to be S = 3/2, with a (d(xz),d(yz))3(d(xy))1(d(z)2)1 electron configuration, lying some 120-680 cm(-1) higher in energy, depending on the particular porphyrinate and axial ligand. Full analysis of the paramagnetic shifts to allow separation of the contact and pseudocontact contributions could be achieved only for the [TMPFe(L)2]+ series of complexes.
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Affiliation(s)
- C Todd Watson
- Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041, USA.
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Walker FA. Nitric oxide interaction with insect nitrophorins and thoughts on the electron configuration of the {FeNO}6 complex. J Inorg Biochem 2005; 99:216-36. [PMID: 15598503 DOI: 10.1016/j.jinorgbio.2004.10.009] [Citation(s) in RCA: 136] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2004] [Revised: 09/26/2004] [Accepted: 09/27/2004] [Indexed: 10/26/2022]
Abstract
The nitrophorins are NO-carrying heme proteins that are found in the saliva of two species of blood-sucking insects, the kissing bug (Rhodnius prolixus) and the bedbug (Cimex lectularius). In both insects the NO is bound to the ferric form of the protein, which gives rise to Kds in the micromolar to nanomolar range, and thus upon injection of the saliva into the tissues of the victim the NO can dissociate to cause vasodilation and inhibition of platelet aggregation. The structures of the proteins from each of these insects are unique, and each has a large component of beta-sheet structure, which is unusual for heme proteins. While the Rhodnius nitrophorins increase the effectiveness of their NO-heme proteins by also binding histamine, secreted by the victim in response to the bite, to the heme, the Cimex nitrophorin does not bind histamine but rather binds two molecules of NO reversibly, one to the heme and the other to the cysteine thiolate which serves as the heme ligand in the absence of NO. This requires homolytic cleavage of the Fe-S-Cys bond, which produces an EPR-active Fe(II)-NO complex having the {FeNO}7 electron configuration. For the Rhodnius nitrophorins, the heme of the {FeNO}6 stable NO complex could have the limiting electron configurations Fe(III)-NO+ or Fe(II)-NO+. While vibrational spectroscopy suggests the latter and Mossbauer spectroscopy cannot differentiate between a purely diamagnetic Fe(II) center and a strongly antiferromagnetically coupled Fe(III)-NO* center, the strong ruffling of the heme (with alternate meso-carbons shifted significantly above and below the mean plane of the porphyrin, and concomitant shifts of the beta-pyrrole carbons above and below the mean plane of the porphyrin ring, to produce a very nonplanar porphyrin macrocycle) may suggest at least an important contribution of the latter. The strong ruffling would help to stabilize the (dxz, dyz)4(dxy)1 electron configuration of low-spin Fe(III) (but not low-spin Fe(II)), and the dxy orbital does not have correct symmetry for overlap with the half-filled pi* orbital of NO. This Fe(III)-NO* electron configuration would facilitate reversible dissociation of NO.
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Affiliation(s)
- F Ann Walker
- Department of Chemistry, University of Arizona, PO 210041, Tucson, AZ 85721-0041, USA.
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Yatsunyk LA, Shokhirev NV, Walker FA. Magnetic Resonance Spectroscopic Investigations of the Electronic Ground and Excited States in Strongly Nonplanar Iron(III) Dodecasubstituted Porphyrins. Inorg Chem 2005; 44:2848-66. [PMID: 15819574 DOI: 10.1021/ic049089q] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A series of axially ligated complexes of iron(III) octamethyltetraphenylporphyrin, (OMTPP)Fe(III), octaethyltetraphenylporphyrin, (OETPP)Fe(III), its perfluorinated phenyl analogue, (F(20)OETPP)Fe(III), and tetra-(beta,beta'-tetramethylene)tetraphenylporphyrin, (TC(6)TPP)Fe(III), have been prepared and characterized by (1)H NMR spectroscopy: chloride, perchlorate, bis-4-(dimethylamino)pyridine, bis-1-methylimidazole, and bis-cyanide. Complete spectral assignments have been made using 1D and 2D techniques. The temperature dependences of the proton resonances of the complexes show significant deviations from simple Curie behavior and evidence of ligand exchange, ligand rotation, and porphyrin ring inversion at ambient temperatures. At temperatures below the point where dynamics effects contribute, the temperature dependences of the proton chemical shifts of the complexes could be fit to an expanded version of the Curie law using a temperature-dependent fitting program developed in our laboratory that includes consideration of a thermally accessible excited state. The results show that, although the ground state differs for various axial ligand complexes and is usually fully consistent with that observed by EPR spectroscopy at 4.2 K, the excited state often has S = (3)/(2) (or S = (5)/(2) in the cases where the ground state has S = (3)/(2)). The EPR spectra (4.2 K) of bis-4-(dimethylamino)pyridine and bis-1-methylimidazole complexes show "large-g(max)" signals with g(max) = 3.20 and 3.12, respectively, and the latter also shows a normal rhombic EPR signal, indicating the presence of low-spin (LS) (d(xy))(2)(d(xz),d(yz))(3) ground states for both. The bis-cyanide complex also yields a large-g(max) EPR spectrum with g = 3.49 and other features that could suggest that some molecules have the (d(xz),d(yz))(4)(d(xy))(1) ground state. The EPR spectra of all five-coordinate chloride complexes have characteristic features of predominantly S = (5)/(2) ground-state systems with admixture of 1-10% of S = (3)/(2) character.
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Affiliation(s)
- Liliya A Yatsunyk
- Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041, USA
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Abstract
The dynamics of porphyrin ring inversion of a number of Fe(III) complexes of octamethyltetraphenylporphyrin, (OMTPP)Fe(III); octaethyltetraphenylporphyrin, (OETPP)Fe(III); octaethyltetra(perfluorophenyl)porphyrin, (F(20)OETPP)Fe(III); and tetra-beta,beta'-tetramethylenetetraphenyl-porphyrin, (TC(6)TPP)Fe(III), having either one (Cl(-), ClO(4-)) or two [4-(dimethylamino)pyridine, 4-Me(2)NPy; 1-methylimidazole, 1-MeIm; tert-butylisocyanide, t-BuNC; or cyanide, CN(-)] axial ligands have been characterized by 1D dynamic NMR (DNMR) and 2D (1)H NOESY/EXSY spectroscopies as a function of temperature. The activation parameters, Delta H++, Delta S++, and Delta G++(298), and the extrapolated rate constants at 298 K for three chloride, one perchlorate, and three bis-(4-Me(2)NPy) complexes as well as [FeOETPP(1-MeIm)(2)]Cl, [FeOETPP(t-BuNC)(2)]ClO(4), and Na[FeOETPP(CN)(2)] have been determined. The results indicate that there is a wide range of flexibility for the porphyrin core (k(ex)(298) = 10-10(7) s(-1)) that decreases in the order TC(6)TPP > OMTPP > F(20)OETPP > or = OETPP, which correlates with increasing porphyrin nonplanarity. To determine the effect of axial ligands, we calculated the free energy of activation, Delta G++(298) for OETPPFe(III) bis-ligated with 4-Me(2)NPy, 1-MeIm, or 4-CNPy (approximately 59 kJ mol(-1)), and for complexes with small cylindrical ligands (t-BuNC and CN(-)) (approximately 37 kJ mol(-1)). These data suggest that the Delta G++(298) for planar ligand rotation is roughly 20-25 kJ mol(-1).
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Affiliation(s)
- Liliya A Yatsunyk
- Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041, USA
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Astashkin AV, Raitsimring AM, Walker FA, Rensing C, McEvoy MM. Characterization of the copper(II) binding site in the pink copper binding protein CusF by electron paramagnetic resonance spectroscopy. J Biol Inorg Chem 2005; 10:221-30. [PMID: 15770503 DOI: 10.1007/s00775-005-0631-y] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2004] [Accepted: 02/01/2005] [Indexed: 10/25/2022]
Abstract
Electron paramagnetic resonance (EPR) spectroscopy has been used to structurally characterize the copper-binding site in CusF protein from Escherichia coli. The EPR spectra indicate a single type II copper center with parameters typical for nitrogen and oxygen ligands (A(parallel) approximately 200 G, g(parallel) approximately 2.186, g(perpendicular) approximately 2.051). The pulsed EPR data show that one of the ligands to Cu2+ is an imidazole ring of a histidine residue. The remote amino nitrogen of this imidazole ring is readily observed by electron spin-echo envelope modulation spectroscopy, while the imino nitrogen that is directly coordinated to the Cu2+ ion is observed by pulsed electron-nuclear double resonance (ENDOR). In addition, the ENDOR spectra reveal the presence of one more nitrogen ligand that was assigned to be a deprotonated peptide nitrogen. Apart from the two nitrogen ligands, it has been established that there are two nearby hydroxyl protons, although whether these belong to a single equatorial water ligand or two equatorial hydroxide ligands is not known.
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Cai S, Lichtenberger DL, Walker FA. NMR and EPR Studies of the Bis(pyridine) and Bis(tert-butyl isocyanide) Complexes of Iron(III) Octaethylchlorin. Inorg Chem 2005; 44:1890-903. [PMID: 15762715 DOI: 10.1021/ic0490876] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The NMR and EPR spectra of a series of pyridine complexes [(OEC)Fe(L)2]+ (L = 4-Me2NPy, Py, and 4-CNPy) have been investigated. The EPR spectra at 4.2 K suggest that, with a decrease of the donor strength of the axial ligands, the complexes change their ground state from (d(xy))2 (d(xz)d(yz))3 to (d(xz)d(yz))4 (d(xy))1. The NMR data from 303 to 183 K show that at any temperature within this range the chemical shifts of pyrrole-8,17-CH2 protons increase with a decrease in the donor strength of the axial ligands. The full peak assignments of the [(OEC)Fe(L)2]+ complexes of this study have been made from COSY and NOE difference experiments. The pyrrole-8,17-CH2 and pyrroline protons show large chemical shifts (hence indicating large pi spin density on the adjacent carbons which are part of the pi system), while pyrrole-12,13-CH2 and -7,18-CH2 protons show much smaller chemical shifts, as predicted by the spin densities obtained from molecular orbital calculations, both Hückel and DFT; the DFT calculations additionally show close energy spacing of the highest five filled orbitals (of the Fe(II) complex) and strong mixing of metal and chlorin character in these orbitals that is sensitive to the donor strength of the axial substituents. The pattern of chemical shifts of the pyrrole-CH2 protons of [(OEC)Fe(t-BuNC)2]+ looks somewhat like that of [(OEC)Fe(4-Me2NPy)2]+, while the chemical shifts of the meso-protons are qualitatively similar to those of [(OEP)Fe(t-BuNC)2]+. The temperature dependence of the chemical shifts of [(OEC)Fe(t-BuNC)2]+ shows that it has a mixed (d(xz)d(yz))4 (d(xy))1 and (d(xy))2 (d(xz),d(yz))3 electron configuration that cannot be resolved by temperature-dependent fitting of the proton chemical shifts, with a S = 5/2 excited state that lies somewhat more than 2kT at room temperature above the ground state; the observed pattern of chemical shifts is the approximate average of those expected for the two S = 1/2 electronic configurations, which involve the a-symmetry SOMO of a planar chlorin ring with the unpaired electron predominantly in the d(yz) orbital and the b-symmetry SOMO of a ruffled chlorin ring with the unpaired electron predominantly in the d(xy) orbital. A rapid interconversion between the two, with calculated vibrational frequency of 22 cm(-1), explains the observed pattern of chemical shifts, while a favoring of the ruffled conformation explains the negative chemical shift (and thus the negative spin density at the alpha-pyrroline ring carbons), of the pyrroline-H of [TPCFe(t-BuNC)2]CF3SO3 (Simonneaux, G.; Kobeissi, M. J. Chem. Soc., Dalton Trans. 2001, 1587-1592). Peak assignments for high-spin (OEC)FeCl have been made by saturation transfer techniques that depend on chemical exchange between this complex and its bis-4-Me2NPy adduct. The contact shifts of the pyrrole-CH2 and meso protons of the high-spin complex depend on both sigma and pi spin delocalization due to contributions from three of the occupied frontier orbitals of the chlorin ring.
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Affiliation(s)
- Sheng Cai
- Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041, USA
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Cai S, Belikova E, Yatsunyk LA, Stolzenberg AM, Walker FA. Magnetic Resonance and Structural Investigations of (Monooxooctaethylchlorinato)iron(III) Chloride and Its Bis(imidazole) Complex. Inorg Chem 2005; 44:1882-9. [PMID: 15762714 DOI: 10.1021/ic049088y] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
(Monooxooctaethylchlorinato)iron(III) chloride, (oxo-OEC)FeCl, 1, has been investigated by X-ray crystallography and by 1H NMR spectroscopy. Its bis(imidazole-d4) complex has been studied by multidimensional 1H NMR and EPR spectroscopies, and the results are compared to those for the bis(Im-d4) complex of (octaethylchlorinato)iron(III) chloride, (OEC)FeCl, 2. EPR and NMR results show that both [(oxo-OEC)Fe(Im-d4)2]Cl and [(OEC)Fe(Im-d4)2]Cl are low-spin Fe(III) complexes with (d(xy))2 (d(xz),d(yz))3 electronic ground states, both at 4.2 K (EPR spectra) and at ambient temperatures utilized for solution NMR studies. The pattern of chemical shifts of the pyrrole-CH2 and meso protons are similar, with the 8,17-carbons having the largest and the 12,13-carbons having the smallest spin densities in each case, except that [(OEC)Fe(Im-d4)2]Cl has a slightly wider range of pyrrole-CH2 chemical shifts and more resonances are observed for [(oxo-OEC)Fe(Im-d4)2]Cl due to its lower symmetry. Full proton resonance assignments for both complexes have been made from COSY, NOESY, and NOE difference experiments.
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Affiliation(s)
- Sheng Cai
- Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041, USA
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Weichsel A, Maes EM, Andersen JF, Valenzuela JG, Shokhireva TK, Walker FA, Montfort WR. Heme-assisted S-nitrosation of a proximal thiolate in a nitric oxide transport protein. Proc Natl Acad Sci U S A 2005; 102:594-9. [PMID: 15637157 PMCID: PMC545542 DOI: 10.1073/pnas.0406549102] [Citation(s) in RCA: 132] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2004] [Accepted: 11/30/2004] [Indexed: 11/18/2022] Open
Abstract
Certain bloodsucking insects deliver nitric oxide (NO) while feeding, to induce vasodilation and inhibit blood coagulation. We have expressed, characterized, and determined the crystal structure of the Cimex lectularius (bedbug) nitrophorin, the protein responsible for NO storage and delivery, to understand how the insect successfully handles this reactive molecule. Surprisingly, NO binds not only to the ferric nitrophorin heme, but it can also be stored as an S-nitroso (SNO) conjugate of the proximal heme cysteine (Cys-60) when present at higher concentrations. EPR- and UV-visible spectroscopies, and a crystallographic structure determination to 1.75-A resolution, reveal SNO formation to proceed with reduction of the heme iron, yielding an Fe-NO complex. Stopped-flow kinetic measurements indicate that an ordered reaction mechanism takes place: initial NO binding occurs at the ferric heme and is followed by heme reduction, Cys-60 release from the heme iron, and SNO formation. Release of NO occurs through a reversal of these steps. These data provide, to our knowledge, the first view of reversible metal-assisted SNO formation in a protein and suggest a mechanism for its role in NO release from ferrous heme. This mechanism and Cimex nitrophorin structure are completely unlike those of the nitrophorins from Rhodnius prolixus, where NO protection is provided by a large conformational change that buries the heme nitrosyl complex, highlighting the remarkable evolution of proteins that assist insects in bloodfeeding.
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Affiliation(s)
- Andrzej Weichsel
- Department of Biochemistry and Molecular Biophysics, University of Arizona, Tucson, AZ 85721, USA
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Helvig C, Tijet N, Feyereisen R, Walker FA, Restifo LL. Drosophila melanogaster CYP6A8, an insect P450 that catalyzes lauric acid (ω-1)-hydroxylation. Biochem Biophys Res Commun 2004; 325:1495-502. [PMID: 15555597 DOI: 10.1016/j.bbrc.2004.10.194] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2004] [Indexed: 10/26/2022]
Abstract
Only a handful of P450 genes have been functionally characterized from the approximately 90 recently identified in the genome of Drosophila melanogaster. Cyp6a8 encodes a 506-amino acid protein with 53.6% amino acid identity with CYP6A2. CYP6A2 has been shown to catalyze the metabolism of several insecticides including aldrin and heptachlor. CYP6A8 is expressed at many developmental stages as well as in adult life. CYP6A8 was produced in Saccharomyces cerevisiae and enzymatically characterized after catalytic activity was reconstituted with D. melanogaster P450 reductase and NADPH. Although several saturated or non-saturated fatty acids were not metabolized by CYP6A8, lauric acid (C12:0), a short-chain unsaturated fatty acid, was oxidized by CYP6A8 to produce 11-hydroxylauric acid with an apparent V(max) of 25 nmol/min/nmol P450. This is the first report showing that a member of the CYP6 family catalyzes the hydroxylation of lauric acid. Our data open new prospects for the CYP6 P450 enzymes, which could be involved in important physiological functions through fatty acid metabolism.
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Affiliation(s)
- Christian Helvig
- Department of Chemistry, The University of Arizona, Tucson, AZ 85721, USA.
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Murataliev MB, Trinh LN, Moser LV, Bates RB, Feyereisen R, Walker FA. Chimeragenesis of the fatty acid binding site of cytochrome P450BM3. Replacement of residues 73-84 with the homologous residues from the insect cytochrome P450 CYP4C7. Biochemistry 2004; 43:1771-80. [PMID: 14967018 DOI: 10.1021/bi035674b] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A protein fragment of P450BM3 (residues 73-84) which participates in palmitoleate binding was subjected to scanning chimeragenesis. Amino acids 73-84, 73-78, 75-80, and 78-82 were replaced with the homologous fragments of the insect terpenoid hydroxylase CYP4C7. The four chimeric proteins, C(73-84), C(73-78), C(75-80), and C(78-82), were expressed, purified, and characterized. All the chimeric proteins contained all the cofactors and catalyzed monooxygenation of palmitate and of the sesquiterpene farnesol. Chimeragenesis altered substrate binding as shown by the changes in the amplitude of the palmitate-induced type I spectral shift. C(78-82) had monooxygenase activities close to those of P450BM3, while the rest of the chimeric proteins had monooxygenase activities that were inhibited relative to that of wild-type P450BM3. The extent of inhibition of the chimeric proteins varied depending on the substrate, and in the case of C(73-84), farnesol and palmitate oxidation was inhibited by 1 and 4 orders of magnitude, respectively. (1)H NMR spectroscopy and GC-MS were used to identify products of farnesol and palmitate oxidation. Wild-type P450BM3 and all chimeric proteins catalyzed oxidation of farnesol with formation of 9-hydroxyfarnesol and farnesol 10,11- and 2,3-epoxides. Three of the four chimeric proteins also formed a new compound, 5-hydroxyfarnesol, which was the major product in the case of C(73-78). In addition to hydroxylation of the C13-C15 atoms, the chimeric enzymes catalyze significant hydroxylation of the C10-C12 atoms of palmitate. In the case of C(78-82), the rates of formation of 11- and 12-hydroxypalmitates increased 7-fold compared to that of wild-type P450BM3 to 106 and 212 min(-)(1), respectively, while the rate of 10-hydroxypalmitate synthesis increased from zero to 106 min(-)(1). Thus, chimeragenesis of the region of residues 73-84 of the substrate binding site shifted the regiospecificity of substrate oxidation toward the center of the farnesol and palmitate molecules.
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Affiliation(s)
- Marat B Murataliev
- Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041, USA.
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Yatsunyk LA, Walker FA. NMR and EPR Spectroscopic and Structural Studies of Low-Spin, (dxz,dyz)4(dxy)1 Ground State Fe(III) Bis-tert-Butylisocyanide Complexes of Dodecasubstituted Porphyrins. Inorg Chem 2004; 43:4341-52. [PMID: 15236547 DOI: 10.1021/ic035242p] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The bis-(1,1-dimethylethylisocyanide) (tert-butylisocyanide) complexes of three iron porphyrinates (2,3,7,8,12,13,17,18-octaethyl-5,10,15,20-tetraphenylporphyrin, OETPP; 2,3,7,8,12,13,17,18-octamethyl-5,10,15,20-tetraphenylporphyrin, OMTPP; and 2,3,7,8,12,13,17,18-tetra-beta,beta'-tetramethylene-5,10,15,20-tetraphenylporphyrin, TC(6)TPP) have been prepared and studied by EPR and (1)H NMR spectroscopy. From EPR and NMR spectroscopic results it has been found that the ground states of the bis-(t-BuNC) complexes of OETPP, OMTPP, and TC(6)TPP are represented mainly (99.1-99.4%) as (d(xz,)d(yz))(4)(d(xy))(1) electron configurations, with an excited state lying 700 cm(-)(1) to higher energy for the OMTPP complex, and probably at lower and higher energies, respectively, for the OETPP and TC(6)TPP complexes. In the (1)H NMR spectra the (d(xz,)d(yz))(4)(d(xy))(1) electron configurations of all three complexes are indicated by the large and positive meso-phenyl-H shift differences, delta(m)-delta(o) and delta(m)-delta(p), and close to the diamagnetic shifts of groups (CH(3) or CH(2)) directly attached to the beta-carbons. However, in comparison to meso-only substituted porphyrinates such as [FeTPP(t-BuNC)(2)]ClO(4), the meso-phenyl shift differences are much smaller, especially for the OETPP complex. 2D NOESY spectra show that the flexibility of the porphyrin core decreases with increasing nonplanar distortion in the order TC(6)TPP > OMTPP > OETPP and in the same order the stability of the binding to t-BuNC ligands decreases. In addition, the structures of two crystalline forms of [FeOMTPP(t-BuNC)(2)]ClO(4) have been determined by X-ray crystallography. Both structures showed purely saddled porphyrin cores and somewhat off-axis binding of the isocyanide ligands. To our knowledge, this is the first example of a porphyrin complex with a purely saddled conformation that adopts the (d(xz,)d(yz))(4)(d(xy))(1) ground state. All structurally-characterized complexes of this electron configuration reported previously are ruffled. Therefore, we conclude that a ruffled geometry stabilizes the (d(xz,)d(yz))(4)(d(xy))(1) ground state, but is not necessary for its existence.
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Affiliation(s)
- Liliya A Yatsunyk
- Department of Chemistry, University of Arizona, Tucson, Arizona 85721-0041, USA
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