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Fang YG, Zhu C, Shen L, Wang H, Fang WH. Synergistic Effects of Unconventional Hydrogen Bonds and π-Stacking Interaction and Their Excited-State Dependence: The Origin of Unusual Photophysical Properties of Aromatic Thioketones in Acetonitrile and Hydrocarbons. J Am Chem Soc 2024; 146:28845-28855. [PMID: 39390821 DOI: 10.1021/jacs.4c08578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/12/2024]
Abstract
It has been established experimentally that aromatic thioketones possess several inherently unique photophysical properties, some of which are highly sensitive even to common hydrocarbon solvents. However, the deeper reasons and the underlying mechanisms remain unclear up to date. In this study, the multistate complete active space second-order perturbation theory (MS-CASPT2) has been utilized to investigate the five lowest-lying electronic states (S0, T1, S1, T2, and S2) of 4H-1-benzopyran-4-thione (BPT) in acetonitrile and hydrocarbons. The results show that the S1, T1, and T2 states of BPT are close in energy so that the T2-state-mediated S1 → T2 → T1 and T1 → T2 → S1 transitions could occur in tens of picoseconds, which exhibits little dependence on the formation of the BPT-solvent complexes and on the bulk-solvent effect. This explains why thermally activated delayed fluorescence from the S1 state has been observed for many aromatic thioketones in both inert media and hydrocarbons. Meanwhile, our calculations show that the intracomplex noncovalent interactions could be automatically adjusted by the redistribution of π-electrons in the flexible aromatic rings. This allows the S2 → S1 internal conversion to occur efficiently in the vicinity of the two-state conical intersection, which results in the remarkable changes in the S2-state lifetimes and fluorescence quantum yields of many aromatic thioketones from inert media to hydrocarbon solvents. The aforementioned inherent photophysical properties could be qualitatively understood by a simple model of frontier molecular orbitals. This model could be used to understand photophysical properties of other aromatic compounds (such as aldehydes, ketones, amines, and carboxylic acids) in different solvents.
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Affiliation(s)
- Ye-Guang Fang
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University, Beijing 100875, PR China
| | - Chongqin Zhu
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University, Beijing 100875, PR China
| | - Lin Shen
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University, Beijing 100875, PR China
| | - Haobin Wang
- Department of Chemistry, University of Colorado Denver, Denver, Colorado 80204, United States
| | - Wei-Hai Fang
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University, Beijing 100875, PR China
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2
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Zhang Z, Sheetz EG, Pink M, Yamamoto N, Flood AH. Cone Angles Quantify and Predict the Affinity and Reactivity of Anion Complexes between Trifluoroborates and Rigid Macrocycles. Angew Chem Int Ed Engl 2024; 63:e202409070. [PMID: 38969622 DOI: 10.1002/anie.202409070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2024] [Revised: 07/04/2024] [Accepted: 07/05/2024] [Indexed: 07/07/2024]
Abstract
Steric manipulation is a known concept in molecular recognition but there is currently no linear free energy relationship correlating sterics to the stability of receptor-anion complexes nor to the reactivity of the bound anion. By analogy to Tolman cone angles in cation coordination chemistry, we explore how to define and correlate cone angles of organo-trifluoroborates (R-BF3 -) to the affinities observed for cyanostar-anion binding. We extend the analogy to a rare investigation of the anion's reactivity and how it changes upon binding. The substituent on the anion is used to define the cone angle, θ. A series of 10 anions were studied including versions with ethynyl, ethylene, and ethyl substituents to tune steric bulk across the sp, sp2 and sp3 hybridized α-carbons bearing 0, 1 and 2 hydrogen atoms. A linear relationship between affinity and cone angle is observed for anions bearing substituents larger than the -BF3 - headgroup. This correlation predicted affinities of two new anions to within ±5 %. We explored how complexation affects the reactivity of fluoride exchange. The yield of fluoride transfer from R-BF3 - to Lewis acid triphenylborane is correlated with cone angle. We predict that other rigid macrocycles, like commercially available bambusuril, could follow these trends.
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Affiliation(s)
- Zhao Zhang
- Department of Chemistry, Indiana University Address, 800 East Kirkwood Avenue, Bloomington, Indiana, 47405, United States
| | - Edward G Sheetz
- Department of Chemistry, Indiana University Address, 800 East Kirkwood Avenue, Bloomington, Indiana, 47405, United States
| | - Maren Pink
- Department of Chemistry, Indiana University Address, 800 East Kirkwood Avenue, Bloomington, Indiana, 47405, United States
| | - Nobuyuki Yamamoto
- Department of Chemistry, Indiana University Address, 800 East Kirkwood Avenue, Bloomington, Indiana, 47405, United States
| | - Amar H Flood
- Department of Chemistry, Indiana University Address, 800 East Kirkwood Avenue, Bloomington, Indiana, 47405, United States
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3
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Fosnacht KG, Pluth MD. Activity-Based Fluorescent Probes for Hydrogen Sulfide and Related Reactive Sulfur Species. Chem Rev 2024; 124:4124-4257. [PMID: 38512066 PMCID: PMC11141071 DOI: 10.1021/acs.chemrev.3c00683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/22/2024]
Abstract
Hydrogen sulfide (H2S) is not only a well-established toxic gas but also an important small molecule bioregulator in all kingdoms of life. In contemporary biology, H2S is often classified as a "gasotransmitter," meaning that it is an endogenously produced membrane permeable gas that carries out essential cellular processes. Fluorescent probes for H2S and related reactive sulfur species (RSS) detection provide an important cornerstone for investigating the multifaceted roles of these important small molecules in complex biological systems. A now common approach to develop such tools is to develop "activity-based probes" that couple a specific H2S-mediated chemical reaction to a fluorescent output. This Review covers the different types of such probes and also highlights the chemical mechanisms by which each probe type is activated by specific RSS. Common examples include reduction of oxidized nitrogen motifs, disulfide exchange, electrophilic reactions, metal precipitation, and metal coordination. In addition, we also outline complementary activity-based probes for imaging reductant-labile and sulfane sulfur species, including persulfides and polysulfides. For probes highlighted in this Review, we focus on small molecule systems with demonstrated compatibility in cellular systems or related applications. Building from breadth of reported activity-based strategies and application, we also highlight key unmet challenges and future opportunities for advancing activity-based probes for H2S and related RSS.
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Affiliation(s)
- Kaylin G. Fosnacht
- Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon, 97403-1253, United States
| | - Michael D. Pluth
- Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon, 97403-1253, United States
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4
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Lv W, Xu Y, Yang T, Wang L, Huang J, Huang H, Feng G. Unveiling the underappreciated: The bonding features of C-H⋯S-S interactions observed from rotational spectroscopy. J Chem Phys 2024; 160:134302. [PMID: 38557843 DOI: 10.1063/5.0200788] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Accepted: 03/18/2024] [Indexed: 04/04/2024] Open
Abstract
The C-H⋯S-S interactions are fundamentally important to understand the stability of biomacromolecules and their binding with small molecules, but they are still underappreciated. Herein, we characterized the C-H⋯S-S interactions in model molecular complexes. The rotational spectra of the complexes of diethyl disulfide with CH2CH2 and CH2CHF were measured and analyzed. All the detected structures are mainly stabilized by a C-H⋯S-S hydrogen bond, providing stabilization energies of 2.3-7.2 kJ mol-1. Incidental C-H⋯π or C-H⋯F interactions enhance the stabilization of the complexes. London dispersion, which accounts for 54%-68% of the total attractions, is the main driving force of stabilization. The provided bonding features of C-H⋯S-S are crucial for understanding the stabilizing role of this type of interaction in diverse processes such as supramolecular recognition, protein stability, and enzyme activity.
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Affiliation(s)
- Wenqi Lv
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 401331, China
| | - Yugao Xu
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 401331, China
| | - Tingting Yang
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 401331, China
| | - Liuting Wang
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 401331, China
| | - Jinxi Huang
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 401331, China
| | - Haiying Huang
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 401331, China
| | - Gang Feng
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 401331, China
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5
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Fargher HA, Delmau LH, Bryantsev VS, Haley MM, Johnson DW, Moyer BA. Disrupting the Hofmeister bias in salt liquid-liquid extraction with an arylethynyl bisurea anion receptor. Chem Sci 2024; 15:5311-5318. [PMID: 38577371 PMCID: PMC10988605 DOI: 10.1039/d3sc05922g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Accepted: 03/04/2024] [Indexed: 04/06/2024] Open
Abstract
Host-mediated liquid-liquid extraction is a convenient method for the separation of inorganic salts. However, selective extraction of an anion, regardless of its hydrophilicity or lipophilicity as qualitatively described by its place in the Hofmeister series, remains challenging. Herein we report the complete disruption of the Hofmeister-based ordering of anions in host-mediated extraction by a rigidified tweezer-type receptor possessing remarkably strong anion-binding affinity under the conditions examined. Experiments introduce a convenient new method for determination of anion binding using phosphorus inductively coupled plasma mass spectrometry (ICP-MS) to measure extraction of tetra-n-butylphosphonium (TBP+) salts from water into nitrobenzene, specifically examining the disrupting effect of the added arylethynyl bisurea anion receptor. In the absence of the receptor, the salt partitioning follows the expected Hofmeister-type ordering favoring the larger, less hydrated anions; the analysis yields the value -24 kJ mol-1 for the standard Gibbs energy of partitioning of TBP+ cation from water into nitrobenzene at 25 °C. Selectivity is markedly changed by the addition of receptor to the nitrobenzene and is concentration dependent, giving rise to three selectivity regimes. We then used SXLSQI liquid-liquid equilibrium analysis software developed at Oak Ridge National Laboratory to fit host-mediated extraction equilibria for TBP+ salts of Cl-, Br-, I-, and NO3- to the distribution data. While the reverse-Hofmeister 1 : 1 binding of the anions by the receptor effectively cancels the Hofmeister selectivity of the TBPX partitioning into nitrobenzene, formation of unexpected 2 : 1 receptor : anion complexes favoring Cl- and Br- dominates the selectivity at elevated receptor concentrations, producing the unusual order Br- > Cl- > NO3- > I- in anion distribution wherein a middle member of the series is selected and the most lipophilic anion is disfavored. Density functional theory calculations confirmed the likelihood of forming 2 : 1 complexes, where Cl- and Br- are encapsulated by two receptors adopting energetically competitive single or double helix structures. The calculations explain the rare non-Hofmeister preference for Br-. This example shows that anion receptors can be used to control the selectivity and efficiency of salt extraction regardless of the position of the anion in the Hofmeister series.
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Affiliation(s)
- Hazel A Fargher
- Department of Chemistry and Biochemistry, Materials Science Institute, University of Oregon Eugene OR 97403-1253 USA
| | - Lætitia H Delmau
- Radioisotope Science and Technology Division, Oak Ridge National Laboratory Oak Ridge TN 37831-6384 USA
| | | | - Michael M Haley
- Department of Chemistry and Biochemistry, Materials Science Institute, University of Oregon Eugene OR 97403-1253 USA
| | - Darren W Johnson
- Department of Chemistry and Biochemistry, Materials Science Institute, University of Oregon Eugene OR 97403-1253 USA
| | - Bruce A Moyer
- Chemical Sciences Division, Oak Ridge National Laboratory Oak Ridge TN 37831-6119 USA
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6
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Davis AG, Zakharov LN, Pluth MD. Reversible Hydrosulfide (HS -) Binding Using Exclusively C-H Hydrogen-Bonding Interactions in Imidazolium Hosts. Inorg Chem 2024; 63:3057-3062. [PMID: 38286007 DOI: 10.1021/acs.inorgchem.3c03922] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2024]
Abstract
H2S is a physiologically important signaling molecule with complex roles in biology and exists primarily as HS- at physiological pH. Despite this anionic character, few investigations have focused on the molecular recognition and reversible binding of this important biological anion. Using a series of imidazole and imidazolium host molecules, we investigate the role of preorganization and charge on HS- binding. Using a macrocyclic bis-imidazolium receptor, we demonstrate the unexpected 2:1 host-guest binding of HS-, which was characterized both in solution and by X-ray crystallography. To the best of our knowledge, this is the first example of this binding stoichiometry for HS- binding. Moreover, the short C-H···S distances of 2.53, 2.54, 2.76, and 2.79 Å are well within the sum of the van der Waals radii of the interacting atoms, which is consistent with strong C-H···S interactions.
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Affiliation(s)
- Amanda G Davis
- Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, Institute of Molecular Biology, 1253 University of Oregon. Eugene, Oregon 97403, United States
| | - Lev N Zakharov
- Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, Institute of Molecular Biology, 1253 University of Oregon. Eugene, Oregon 97403, United States
| | - Michael D Pluth
- Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, Institute of Molecular Biology, 1253 University of Oregon. Eugene, Oregon 97403, United States
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7
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Du T, Shen B, Dai J, Zhang M, Chen X, Yu P, Liu Y. Controlled and Regioselective Ring-Opening Polymerization for Poly(disulfide)s by Anion-Binding Catalysis. J Am Chem Soc 2023; 145:27788-27799. [PMID: 37987648 DOI: 10.1021/jacs.3c10708] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2023]
Abstract
Poly(disulfide)s are an emerging class of sulfur-containing polymers with applications in medicine, energy, and functional materials. However, the constituent dynamic covalent S-S bond is highly reactive in the presence of the sulfide (RS-) anion, imposing a persistent challenge to control the polymerization. Here, we report an anion-binding approach to arrest the high reactivity of the RS- chain end to control the synthesis of linear poly(disulfide)s, realizing a rapid, living ring-opening polymerization of 1,2-dithiolanes with narrow dispersity and high regioselectivity (Mw/Mn ∼ 1.1, Ps ∼ 0.85). Mechanistic studies support the formation of a thiourea-base-sulfide ternary complex as the catalytically active species during the chain propagation. Theoretical analyses reveal a synergistic catalytic model where the catalyst preorganizes the protonated base and anionic chain end to establish spatial confinement over the bound monomer, effecting the observed regioselectivity. The catalytic system is amenable to monomers with various functional groups, and semicrystalline polymers are also obtained from lipoic acid derivatives by enhancing the regioselectivity.
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Affiliation(s)
- Tianyi Du
- Beijing National Laboratory for Molecular Sciences, Center for Soft Matter Science and Engineering, Key Laboratory of Polymer Chemistry and Physics of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Boming Shen
- Department of Chemistry and Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, Shenzhen 518055, China
| | - Jieyu Dai
- Beijing National Laboratory for Molecular Sciences, Center for Soft Matter Science and Engineering, Key Laboratory of Polymer Chemistry and Physics of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Miaomiao Zhang
- Beijing National Laboratory for Molecular Sciences, Center for Soft Matter Science and Engineering, Key Laboratory of Polymer Chemistry and Physics of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Xingjian Chen
- Beijing National Laboratory for Molecular Sciences, Center for Soft Matter Science and Engineering, Key Laboratory of Polymer Chemistry and Physics of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Peiyuan Yu
- Department of Chemistry and Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, Shenzhen 518055, China
| | - Yun Liu
- Beijing National Laboratory for Molecular Sciences, Center for Soft Matter Science and Engineering, Key Laboratory of Polymer Chemistry and Physics of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
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8
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Chvojka M, Madea D, Valkenier H, Šindelář V. Tuning CH Hydrogen Bond-Based Receptors toward Picomolar Anion Affinity via the Inductive Effect of Distant Substituents. Angew Chem Int Ed Engl 2023:e202318261. [PMID: 38063265 DOI: 10.1002/anie.202318261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Indexed: 12/23/2023]
Abstract
Inspired by nature, artificial hydrogen bond-based anion receptors have been developed to achieve high anion selectivity; however, their binding affinity is usually low. The potency of these receptors is usually increased by the introduction of aryl substituents, which withdraw electrons from their binding site through the resonance effect. Here, we show that the polarization of the C(sp3 )-H binding site of bambusuril receptors, and thus their potency to bind anions, can be modulated by the inductive effect. The presence of electron-withdrawing groups on benzyl substituents of bambusurils significantly increases their binding affinities to halides, resulting in the strongest iodide receptor reported to date with an association constant greater than 1013 M-1 in acetonitrile. A Hammett plot showed that while the bambusuril affinity toward halides linearly increases with the electron-withdrawing power of their substituents, their binding selectivity remains essentially unchanged.
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Affiliation(s)
- Matúš Chvojka
- Department of Chemistry, Faculty of Science, Masaryk University, 625 00, Brno, Czech Republic
- RECETOX, Faculty of Science, Masaryk University, 625 00, Brno, Czech Republic
- Engineering of Molecular NanoSystems, École polytechnique de Bruxelles, Université libre de Bruxelles, Avenue F.D. Roosevelt 50, CP165/64, 1050, Brussels, Belgium
| | - Dominik Madea
- Department of Chemistry, Faculty of Science, Masaryk University, 625 00, Brno, Czech Republic
- RECETOX, Faculty of Science, Masaryk University, 625 00, Brno, Czech Republic
| | - Hennie Valkenier
- Engineering of Molecular NanoSystems, École polytechnique de Bruxelles, Université libre de Bruxelles, Avenue F.D. Roosevelt 50, CP165/64, 1050, Brussels, Belgium
| | - Vladimír Šindelář
- Department of Chemistry, Faculty of Science, Masaryk University, 625 00, Brno, Czech Republic
- RECETOX, Faculty of Science, Masaryk University, 625 00, Brno, Czech Republic
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9
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Kuhl GM, Banning DH, Fargher HA, Davis WA, Howell MM, Zakharov LN, Pluth MD, Johnson DW. Benchmarking the placement of hydrosulfide in the Hofmeister series using a bambus[6]uril-based ChemFET sensor. Chem Sci 2023; 14:10273-10279. [PMID: 37772108 PMCID: PMC10530170 DOI: 10.1039/d3sc03616b] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Accepted: 09/02/2023] [Indexed: 09/30/2023] Open
Abstract
Hydrosulfide (HS-) is the conjugate base of gasotransmitter hydrogen sulfide (H2S) and is a physiologically-relevant small molecule of great interest in the anion sensing community. However, selective sensing and molecular recognition of HS- in water remains difficult because, in addition to the diffuse charge and high solvation energy of anions, HS- is highly nucleophilic and readily oxidizes into other reactive sulfur species. Moreover, the direct placement of HS- in the Hofmeister series remains unclear. Supramolecular host-guest interactions provide a promising platform on which to recognize and bind hydrosulfide, and characterizing the placement of HS- in the Hofmeister series would facilitate the future design of selective receptors for this challenging anion. Few examples of supramolecular HS- binding have been reported, but the Sindelar group reported HS- binding in water using bambus[6]uril macrocycles in 2018. We used this HS- binding platform as a starting point to develop a chemically-sensitive field effect transistor (ChemFET) to facilitate assigning HS- to a specific place in the Hofmeister series. Specifically, we prepared dodeca-n-butyl bambus[6]uril and incorporated it into a ChemFET as the HS- receptor motif. The resultant device provided an amperometric response to HS-, and we used this device to measure the response of other anions, including SO42-, F-, Cl-, Br-, NO3-, ClO4-, and I-. Using this response data, we were able to experimentally determine that HS- lies between Cl- and Br- in the Hofmeister series, which matches recent theoretical computational work that predicted a similar placement. Taken together, these results highlight the potential of using molecular recognition coupled with ChemFET architectures to develop new approaches for direct and reversible HS- detection and measurement in water and further advance our understanding of different recognition approaches for this challenging anion.
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Affiliation(s)
- Grace M Kuhl
- Department of Chemistry & Biochemistry, Materials Science Institute, University of Oregon 97403-1253 Eugene OR USA https://www.dwjlab.com/
| | - Douglas H Banning
- Department of Chemistry & Biochemistry, Materials Science Institute, University of Oregon 97403-1253 Eugene OR USA https://www.dwjlab.com/
| | - Hazel A Fargher
- Department of Chemistry & Biochemistry, Materials Science Institute, University of Oregon 97403-1253 Eugene OR USA https://www.dwjlab.com/
| | - Willow A Davis
- Department of Chemistry & Biochemistry, Materials Science Institute, University of Oregon 97403-1253 Eugene OR USA https://www.dwjlab.com/
| | - Madeline M Howell
- Department of Chemistry & Biochemistry, Materials Science Institute, University of Oregon 97403-1253 Eugene OR USA https://www.dwjlab.com/
| | - Lev N Zakharov
- Department of Chemistry & Biochemistry, Materials Science Institute, University of Oregon 97403-1253 Eugene OR USA https://www.dwjlab.com/
| | - Michael D Pluth
- Department of Chemistry & Biochemistry, Materials Science Institute, University of Oregon 97403-1253 Eugene OR USA https://www.dwjlab.com/
| | - Darren W Johnson
- Department of Chemistry & Biochemistry, Materials Science Institute, University of Oregon 97403-1253 Eugene OR USA https://www.dwjlab.com/
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10
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Li J, Wang C, Mo Y. Selectivity Rule of Cryptands for Anions: Molecular Rigidity and Bonding Site. Chemistry 2023; 29:e202203558. [PMID: 36538660 DOI: 10.1002/chem.202203558] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 12/15/2022] [Accepted: 12/20/2022] [Indexed: 12/24/2022]
Abstract
Cryptands utilize inside CH or NH groups as hydrogen bond (H-bond) donors to capture anions such as halides. In this work, the nature and selectivity of confined hydrogen bonds inside cryptands were computationally analyzed with the energy decomposition scheme based on the block-localized wavefunction method (BLW-ED), aiming at an elucidation of governing factors in the binding between cryptands and anions. It was revealed that the intrinsic strengths of inward hydrogen bonds are dominated by the electrostatic attraction, while the anion preferences (selectivity) of inner CH and NH hydrogen bonds are governed by the Pauli exchange repulsion and electrostatic interaction, respectively. Typical conformers of cages are classified into two groups, including the C3(h) -symmetrical conformers, in which all halide anions are located near the centroids of cages, and the "semi-open" conformers, which exhibit shifted bonding sites for different halide anions. Accordingly, the difference in governing factors of selectivity is attributed to either the rigidity of cages or the binding site of anions for these two groups. In details, the C3 conformers of NH cryptands can be enlarged more remarkably than the C3(h) -symmetrical conformers of CH cryptands as the size of anion (ionic radius) increases, resulting in the relaxation of the Pauli repulsion and a dramatic reduction in electrostatic attraction, which eventually rules the selectivity of NH cryptands for halide anions. By contrary, the CH cryptands are more rigid and cannot effectively reduce the Pauli repulsion, which subsequently governs the anion preference. Unlike C3 conformers whose rigidity determines the selectivity, semi-open conformers exhibit different binding sites for different anions. From F- to I- , the bonding site shifts toward the outside end of the pocket inside the semi-open NH cryptand, leading to the significant reduction of the electrostatic interaction that dominates the anion preference. Differently, binding sites are much less affected by the size of anion inside the semi-open CH cryptand, in which the Pauli exchange repulsion remains the key factor for the selectivity of inner hydrogen bonds.
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Affiliation(s)
- Jiayao Li
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry & Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China
| | - Changwei Wang
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry & Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China
| | - Yirong Mo
- Department of Nanoscience, Joint School of Nanoscience & Nanoengineering, University of North Carolina at Greensboro, Greensboro, NC, 27401, USA
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11
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Shin D, Jung Y. Molecular electrostatic potential as a general and versatile indicator for electronic substituent effects: statistical analysis and applications. Phys Chem Chem Phys 2022; 24:25740-25752. [PMID: 36155687 DOI: 10.1039/d2cp03244a] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
It is necessary to quantitatively determine substituent effects to accurately elucidate reaction mechanisms in the field of organic chemistry. This paper reports that the molecular electrostatic potential (MESP) can be used as a general and versatile measure for the substituent effects in various chemical reactions by performing extensive density functional theory (DFT) calculations for more than 400 molecules, followed by statistical analyses. We observed a robust and linear correlation between the electrostatic potential and the substituent parameters for various cases of reactive systems, regardless of the DFT functionals, basis sets, and solvation models used. In addition, we statistically analysed the normality of the residuals from the linear regression to demonstrate that strong linear relationships hold universally, which indicates that the electrostatic potential can serve as a physically meaningful quantity for the predictive estimation of substituent effects. In contrast, conventionally used methods based on the charge deviation in the aromatic carbons, as computed using various charge analysis methods, (e.g., Hirshfeld charge analysis) do not demonstrate the statistical normality. Furthermore, we illustrate that MESP can be extensively adopted to strengthen the validity of the linear free energy relationships (LFERs) under various chemical conditions. The results revealed that the MESP shift derived by a functional group on a mono-substituted benzene ring is a strong predictor for the substituent effects on the electronic behaviours in chemical reactions; thus, it can serve as an alternative to other empirical parameters such as the Hammett or Swain-Lupton parameters, or the charge shift.
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Affiliation(s)
- Donghan Shin
- Seoul National University, 1, Gwanak-ro, Gwanak-gu, Seoul, Republic of Korea.
| | - YounJoon Jung
- Seoul National University, 1, Gwanak-ro, Gwanak-gu, Seoul, Republic of Korea.
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12
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Effect of para substituents on magnetic properties of azido-Cu(II) complexes with benzoate/azide coligands: A theoretical perspective. Polyhedron 2022. [DOI: 10.1016/j.poly.2022.115983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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13
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Hollstein S, Shyshov O, Hanževački M, Zhao J, Rudolf T, Jäger CM, von Delius M. Dynamic Covalent Self-Assembly of Chloride- and Ion-Pair-Templated Cryptates. Angew Chem Int Ed Engl 2022; 61:e202201831. [PMID: 35384202 PMCID: PMC9400851 DOI: 10.1002/anie.202201831] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2022] [Indexed: 12/17/2022]
Abstract
While supramolecular hosts capable of binding and transporting anions and ion pairs are now widely available, self-assembled architectures are still rare, even though they offer an inherent mechanism for the release of the guest ion(s). In this work, we report the dynamic covalent self-assembly of tripodal, urea-based anion cryptates that are held together by two orthoester bridgeheads. These hosts exhibit affinity for anions such as Cl- , Br- or I- in the moderate range that is typically advantageous for applications in membrane transport. In unprecedented experiments, we were able to dissociate the Cs⋅Cl ion pair by simultaneously assembling suitably sized orthoester hosts around the Cs+ and the Cl- ion.
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Affiliation(s)
- Selina Hollstein
- Institute of Organic ChemistryUlm UniversityAlbert-Einstein-Allee 1189081UlmGermany
| | - Oleksandr Shyshov
- Institute of Organic ChemistryUlm UniversityAlbert-Einstein-Allee 1189081UlmGermany
| | - Marko Hanževački
- Department of Chemical and Environmental EngineeringUniversity of Nottingham University ParkNottinghamNG7 2RDUK
| | - Jie Zhao
- Institute of Organic ChemistryUlm UniversityAlbert-Einstein-Allee 1189081UlmGermany
| | - Tamara Rudolf
- Institute of Organic ChemistryUlm UniversityAlbert-Einstein-Allee 1189081UlmGermany
| | - Christof M. Jäger
- Department of Chemical and Environmental EngineeringUniversity of Nottingham University ParkNottinghamNG7 2RDUK
| | - Max von Delius
- Institute of Organic ChemistryUlm UniversityAlbert-Einstein-Allee 1189081UlmGermany
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14
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Hollstein S, Shyshov O, Hanževački M, Zhao J, Rudolf T, Jäger CM, Delius M. Dynamisch kovalente Selbstassemblierung von Chlorid‐ und Ionenpaar‐templierten Kryptaten. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202201831] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Selina Hollstein
- Institut für Organische Chemie Universität Ulm Albert-Einstein-Allee 11 89081 Ulm Deutschland
| | - Oleksandr Shyshov
- Institut für Organische Chemie Universität Ulm Albert-Einstein-Allee 11 89081 Ulm Deutschland
| | - Marko Hanževački
- Department of Chemical and Environmental Engineering University of Nottingham University Park Nottingham NG7 2RD Großbritannien
| | - Jie Zhao
- Institut für Organische Chemie Universität Ulm Albert-Einstein-Allee 11 89081 Ulm Deutschland
| | - Tamara Rudolf
- Institut für Organische Chemie Universität Ulm Albert-Einstein-Allee 11 89081 Ulm Deutschland
| | - Christof M. Jäger
- Department of Chemical and Environmental Engineering University of Nottingham University Park Nottingham NG7 2RD Großbritannien
| | - Max Delius
- Institut für Organische Chemie Universität Ulm Albert-Einstein-Allee 11 89081 Ulm Deutschland
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15
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Liang L, Wang Y, Liu B, Gong J, Shi W, Liang S. Fluoropolymer-coated SiO2 nanoparticle-based nanofluids for oil recovery. Colloids Surf A Physicochem Eng Asp 2022. [DOI: 10.1016/j.colsurfa.2021.128242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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16
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Cysteine-Activated Small-Molecule H 2Se Donors Inspired by Synthetic H 2S Donors. J Am Chem Soc 2022; 144:3957-3967. [PMID: 35192764 DOI: 10.1021/jacs.1c12006] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The importance of selenium (Se) in biology and health has become increasingly clear. Hydrogen selenide (H2Se), the biologically available and active form of Se, is suggested to be an emerging nitric oxide (NO)-like signaling molecule. Nevertheless, the research on H2Se chemical biology has technique difficulties due to the lack of well-characterized and controllable H2Se donors under physiological conditions, as well as a robust assay for direct H2Se quantification. Motivated by these needs, here, we demonstrate that selenocyclopropenones and selenoamides are tunable donor motifs that release H2Se upon reaction with cysteine (Cys) at pH 7.4 and that structural modifications enable the rate of Cys-mediated H2Se release to be tuned. We monitored the reaction pathways for the H2Se release and confirmed H2Se generation qualitatively using different methods. We further developed a quantitative assay for direct H2Se trapping and quantitation in an aqueous solution, which should also be operative for investigating future H2Se donor motifs. In addition, we demonstrate that arylselenoamide has the capability of Cys-mediated H2Se release in cellular environments. Importantly, mechanistic investigations and density functional theory (DFT) calculations illustrate the plausible pathways of Cys-activated H2Se release from arylselenoamides in detail, which may help understand the mechanistic issues of the H2S release from pharmacologically important arylthioamides. We anticipate that the well-defined chemistries of Cys-activated H2Se donor motifs will be useful for studying Se biology and for development of new H2Se donors and bioconjugate techniques.
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17
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Fargher HA, Sherbow TJ, Haley MM, Johnson DW, Pluth MD. C-H⋯S hydrogen bonding interactions. Chem Soc Rev 2022; 51:1454-1469. [PMID: 35103265 PMCID: PMC9088610 DOI: 10.1039/d1cs00838b] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
The short C-H⋯S contacts found in available structural data for both small molecules and larger biomolecular systems suggest that such contacts are an often overlooked yet important stabilizing interaction. Moreover, many of these short C-H⋯S contacts meet the definition of a hydrogen bonding interaction. Using available structural data from the Cambridge Structural Database (CSD), as well as selected examples from the literature in which important C-H⋯S contacts may have been overlooked, we highlight the generality of C-H⋯S hydrogen bonding as an important stabilizing interaction. To uncover and establish the generality of these interactions, we compare C-H⋯S contacts with other traditional hydrogen bond donors and acceptors as well as investigate how coordination number and metal bonding affect the preferred geometry of interactions in the solid state. This work establishes that the C-H⋯S bond meets the definition of a hydrogen bond and serves as a guide to identify C-H⋯S hydrogen bonds in diverse systems.
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Affiliation(s)
- Hazel A. Fargher
- Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon, 97403-1253, USA
| | - Tobias J. Sherbow
- Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon, 97403-1253, USA
| | - Michael M. Haley
- Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon, 97403-1253, USA
| | - Darren W. Johnson
- Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon, 97403-1253, USA
| | - Michael D. Pluth
- Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon, 97403-1253, USA
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18
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Macreadie LK, Gilchrist AM, McNaughton DA, Ryder WG, Fares M, Gale PA. Progress in anion receptor chemistry. Chem 2022. [DOI: 10.1016/j.chempr.2021.10.029] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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19
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Mondal D, Ahmad M, Panwaria P, Upadhyay A, Talukdar P. Anion Recognition through Multivalent C-H Hydrogen Bonds: Anion-Induced Foldamer Formation and Transport across Phospholipid Membranes. J Org Chem 2021; 87:10-17. [PMID: 34908424 DOI: 10.1021/acs.joc.1c01408] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A series of triazole-cyanostilbene receptors were designed and synthesized. The receptor binds with the anions through various CH···anion hydrogen bonding interactions, where strong binding was observed for SO42- anions followed by Cl-, Br-, NO3-, and I-, calculated from the 1H NMR titration experiment. The NOESY NMR experiment of the receptor confirmed the formation of anion-induced folded conformation. The CH···anion hydrogen bonding interaction-mediated anion recognition and foldamer formation were further confirmed from geometry optimization studies of the anion-bound complex. The receptor transports Cl- anions efficiently compared to SO42- anions across the lipid bilayer membrane via a mobile carrier mechanism.
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Affiliation(s)
- Debashis Mondal
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, Pune 411008, Maharashtra, India
| | - Manzoor Ahmad
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, Pune 411008, Maharashtra, India
| | - Prakash Panwaria
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, Pune 411008, Maharashtra, India
| | - Avisikta Upadhyay
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, Pune 411008, Maharashtra, India
| | - Pinaki Talukdar
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, Pune 411008, Maharashtra, India
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20
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Mitchell EJ, Beecroft AJ, Martin J, Thompson S, Marques I, Félix V, Beer PD. Hydrosulfide (HS - ) Recognition and Sensing in Water by Halogen Bonding Hosts. Angew Chem Int Ed Engl 2021; 60:24048-24053. [PMID: 34494708 PMCID: PMC8596634 DOI: 10.1002/anie.202110442] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Revised: 09/03/2021] [Indexed: 11/16/2022]
Abstract
Hydrogen sulfide (H2 S) plays a crucial signalling role in a variety of physiological systems, existing as the hydrosulfide anion (HS- ) at physiological pH. Combining the potency of halogen bonding (XB) for anion recognition in water with coumarin fluorophore incorporation in acyclic host structural design, the first XB receptors to bind and, more importantly, sense the hydrosulfide anion in pure water in a reversible chemosensing fashion are demonstrated. The XB receptors exhibit characteristic selective quenching of fluorescence upon binding to HS- . Computational DFT and molecular dynamics simulations in water corroborate the experimental anion binding observations, revealing the mode and nature of HS- recognition by the XB receptors.
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Affiliation(s)
- Edward J. Mitchell
- Department of ChemistryUniversity of OxfordChemistry Research LaboratoryMansfield RoadOxfordOX1 3TAUK
| | - Adam J. Beecroft
- Department of ChemistryUniversity of OxfordChemistry Research LaboratoryMansfield RoadOxfordOX1 3TAUK
| | - Jonathan Martin
- Radioactive Waste ManagementBuilding 329, Thomson Avenue, Harwell CampusDidcotOX11 0GDUK
| | - Sally Thompson
- Radioactive Waste ManagementBuilding 329, Thomson Avenue, Harwell CampusDidcotOX11 0GDUK
| | - Igor Marques
- CICECO—Aveiro Institute of MaterialsDepartment of ChemistryUniversity of Aveiro3810-193AveiroPortugal
| | - Vítor Félix
- CICECO—Aveiro Institute of MaterialsDepartment of ChemistryUniversity of Aveiro3810-193AveiroPortugal
| | - Paul D. Beer
- Department of ChemistryUniversity of OxfordChemistry Research LaboratoryMansfield RoadOxfordOX1 3TAUK
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21
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Mitchell EJ, Beecroft AJ, Martin J, Thompson S, Marques I, Félix V, Beer PD. Hydrosulfide (HS
−
) Recognition and Sensing in Water by Halogen Bonding Hosts. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202110442] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Edward J. Mitchell
- Department of Chemistry University of Oxford Chemistry Research Laboratory Mansfield Road Oxford OX1 3TA UK
| | - Adam J. Beecroft
- Department of Chemistry University of Oxford Chemistry Research Laboratory Mansfield Road Oxford OX1 3TA UK
| | - Jonathan Martin
- Radioactive Waste Management Building 329, Thomson Avenue, Harwell Campus Didcot OX11 0GD UK
| | - Sally Thompson
- Radioactive Waste Management Building 329, Thomson Avenue, Harwell Campus Didcot OX11 0GD UK
| | - Igor Marques
- CICECO—Aveiro Institute of Materials Department of Chemistry University of Aveiro 3810-193 Aveiro Portugal
| | - Vítor Félix
- CICECO—Aveiro Institute of Materials Department of Chemistry University of Aveiro 3810-193 Aveiro Portugal
| | - Paul D. Beer
- Department of Chemistry University of Oxford Chemistry Research Laboratory Mansfield Road Oxford OX1 3TA UK
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22
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Fargher HA, Nickels RA, de Faria TP, Haley MM, Pluth MD, Johnson DW. Deuterium equilibrium isotope effects in a supramolecular receptor for the hydrochalcogenide and halide anions. RSC Adv 2021; 11:26581-26585. [PMID: 35479978 PMCID: PMC9037421 DOI: 10.1039/d1ra05711a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2021] [Accepted: 07/27/2021] [Indexed: 11/29/2022] Open
Abstract
We highlight a convenient synthesis to selectively deuterate an aryl C-H hydrogen bond donor in an arylethynyl bisurea supramolecular anion receptor and use the Perrin method of competitive titrations to study the deuterium equilibrium isotope effects (DEIE) of anion binding for HS-, Cl-, and Br-. This work highlights the utility and also challenges in using this method to determine EIE with highly reactive and/or weakly binding anions.
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Affiliation(s)
- Hazel A Fargher
- Department of Chemistry & Biochemistry, Materials Science Institute, and Knight Campus for Accelerating Scientific Impact, University of Oregon Eugene OR 97403-1253 USA
| | - Russell A Nickels
- Department of Chemistry & Biochemistry, Materials Science Institute, and Knight Campus for Accelerating Scientific Impact, University of Oregon Eugene OR 97403-1253 USA
| | - Thaís P de Faria
- Department of Chemistry & Biochemistry, Materials Science Institute, and Knight Campus for Accelerating Scientific Impact, University of Oregon Eugene OR 97403-1253 USA
| | - Michael M Haley
- Department of Chemistry & Biochemistry, Materials Science Institute, and Knight Campus for Accelerating Scientific Impact, University of Oregon Eugene OR 97403-1253 USA
| | - Michael D Pluth
- Department of Chemistry & Biochemistry, Materials Science Institute, and Knight Campus for Accelerating Scientific Impact, University of Oregon Eugene OR 97403-1253 USA
| | - Darren W Johnson
- Department of Chemistry & Biochemistry, Materials Science Institute, and Knight Campus for Accelerating Scientific Impact, University of Oregon Eugene OR 97403-1253 USA
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23
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Chen LJ, Humphrey SJ, Zhu JL, Zhu FF, Wang XQ, Wang X, Wen J, Yang HB, Gale PA. A Two-Dimensional Metallacycle Cross-Linked Switchable Polymer for Fast and Highly Efficient Phosphorylated Peptide Enrichment. J Am Chem Soc 2021; 143:8295-8304. [PMID: 34042430 PMCID: PMC8193630 DOI: 10.1021/jacs.0c12904] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
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The selective and
efficient capture of phosphopeptides is critical
for comprehensive and in-depth phosphoproteome analysis. Here we report
a new switchable two-dimensional (2D) supramolecular polymer that
serves as an ideal platform for the enrichment of phosphopeptides.
A well-defined, positively charged metallacycle incorporated into
the polymer endows the resultant polymer with a high affinity for
phosphopeptides. Importantly, the stimuli-responsive nature of the
polymer facilitates switchable binding affinity of phosphopeptides,
thus resulting in an excellent performance in phosphopeptide enrichment
and separation from model proteins. The polymer has a high enrichment
capacity (165 mg/g) and detection sensitivity (2 fmol), high enrichment
recovery (88%), excellent specificity, and rapid enrichment and separation
properties. Additionally, we have demonstrated the capture of phosphopeptides
from the tryptic digest of real biosamples, thus illustrating the
potential of this polymeric material in phosphoproteomic studies.
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Affiliation(s)
- Li-Jun Chen
- School of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
| | - Sean J Humphrey
- School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW 2006, Australia
| | - Jun-Long Zhu
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, Chang-Kung Chuang Institute, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
| | - Fan-Fan Zhu
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, Chang-Kung Chuang Institute, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
| | - Xu-Qing Wang
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, Chang-Kung Chuang Institute, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
| | - Xiang Wang
- State Key Laboratory for Modification of Chemical Fibers and Polymer Materials & College of Materials Science and Engineering, Donghua University, Shanghai 201620, China
| | - Jin Wen
- State Key Laboratory for Modification of Chemical Fibers and Polymer Materials & College of Materials Science and Engineering, Donghua University, Shanghai 201620, China.,Institute of Theoretical Chemistry, Faculty of Vienna, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | - Hai-Bo Yang
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, Chang-Kung Chuang Institute, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
| | - Philip A Gale
- School of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia.,The University of Sydney Nano Institute (Sydney Nano), The University of Sydney, Sydney, NSW 2006, Australia
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24
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Levina EO, Khrenova MG, Tsirelson VG. The explicit role of electron exchange in the hydrogen bonded molecular complexes. J Comput Chem 2021; 42:870-882. [PMID: 33675552 DOI: 10.1002/jcc.26507] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2020] [Revised: 02/16/2021] [Accepted: 02/18/2021] [Indexed: 01/22/2023]
Abstract
We applied a set of advanced bonding descriptors to establish the hidden electron density features and binding energy characteristics of intermolecular DH∙∙∙A hydrogen bonds (OH∙∙∙O, NH∙∙∙O and SH∙∙∙O) in 150 isolated and solvated molecular complexes. The exchange-correlation and Pauli potentials as well as corresponding local one-electron forces allowed us to explicitly ascertain how electron exchange defines the bonding picture in the proximity of the H-bond critical point. The electron density features of DH∙∙∙A interaction are governed by alterations in the electron localization in the H-bond region displaying itself in the exchange hole. At that, they do not depend on the variations in the exchange hole mobility. The electrostatic interaction mainly defines the energy of H-bonds of different types, whereas the strengthening/weakening of H-bonds in complexes with varying substituents depends on the barrier height of the exchange potential near the bond critical point. Energy variations between H-bonds in isolated and solvated systems are also caused the electron exchange peculiarities as follows from the corresponding potential and the interacting quantum atom analyses complemented by electron delocalization index calculations. Our approach is based on the bonding descriptors associated with the characteristics of the observable electron density and can be recommended for in-depth studies of non-covalent bonding.
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Affiliation(s)
- Elena O Levina
- Federal Research Centre "Fundamentals of Biotechnology" of the Russian Academy of Sciences, Moscow, Russia.,Moscow Institute of Physics and Technology, Dolgoprudny, Russia
| | - Maria G Khrenova
- Federal Research Centre "Fundamentals of Biotechnology" of the Russian Academy of Sciences, Moscow, Russia.,Moscow Institute of Physics and Technology, Dolgoprudny, Russia.,Lomonosov Moscow State University, Moscow, Russia
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25
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Johnson DW, Haley MM, Bard JP. Bumpy Roads Lead to Beautiful Places: The Twists and Turns in Developing a New Class of PN-Heterocycles. Synlett 2020. [DOI: 10.1055/s-0040-1707168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
The Haley and Johnson labs at the University of Oregon have been collaborating since 2006, combining skillsets in synthetic organic, physical organic, and supramolecular chemistries. This joint project has produced many examples of host molecules that bind anionic guests and give chemical, photophysical, and/or electrical responses. Many of these receptors utilize two-armed arylethynyl backbones that have a variety of hydrogen- or halogen-bonding functional groups appended. However, in attempts to produce a bisamide-containing host using a peptide-coupling protocol with P(OPh)3 present, we isolated something unexpected – a heterocycle containing neighboring P and N atoms. This ‘failed’ reaction turned into a surprisingly robust synthesis of phosphaquinolinones, an unusual class of PN-heterocycles. This Account article tells the rollercoaster story of these heterocycles in our lab. It will highlight our key works to this field, including a suite of fundamental studies of both the original PN-naphthalene moiety, as well as a variety of structural modifications to the arene backbone. It will also discuss the major step forward the project took when we developed a phosphaquinolinone-containing receptor molecule capable of binding HSO4
– selectively, reversibly, and with recyclability. With these findings, the project has gone from hospice care to making a full, robust recovery.1 Introduction2 Initial Discovery3 Setbacks Breathe New Life4 A New Dynamic Duo Develops Dozens of Derivatives5 Physicochemical Characterization5.1 Fluorescence5.2 Molecular Structures5.3 Solution Dimerization Studies6 Applying What We Have Learned6.1 Development of Supramolecular Host6.2 Use of PN Moiety as an Impressive Fluorophore7 Conclusions and Outlook
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26
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Marshall SR, Singh A, Wagner JN, Busschaert N. Enhancing the selectivity of optical sensors using synthetic transmembrane ion transporters. Chem Commun (Camb) 2020; 56:14455-14458. [PMID: 33146644 DOI: 10.1039/d0cc06437h] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Herein, we introduce a new method to optimize the properties of optical sensors, coined the transporter-liposome-fluorophore (TLF) approach. It is shown that this approach can greatly improve the selectivity of the sensor, increase the dynamic range and maintain the sensitivity of the original fluorophore.
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Affiliation(s)
- Sarah R Marshall
- Department of Chemistry, Tulane University, New Orleans, Louisiana 70118, USA.
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27
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Sherbow TJ, Zakharov LN, Johnson DW, Pluth MD. Hydrosulfide Oxidation at a Molybdenum Tetrasulfido Complex. Inorg Chem 2020; 59:15574-15578. [DOI: 10.1021/acs.inorgchem.0c02622] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Tobias J. Sherbow
- Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403-1253, United States
| | - Lev N. Zakharov
- Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403-1253, United States
| | - Darren W. Johnson
- Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403-1253, United States
| | - Michael D. Pluth
- Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403-1253, United States
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28
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Sherbow TJ, Fargher HA, Haley MM, Pluth MD, Johnson DW. Solvent-Dependent Linear Free-Energy Relationship in a Flexible Host-Guest System. J Org Chem 2020; 85:12367-12373. [PMID: 32916056 PMCID: PMC10778081 DOI: 10.1021/acs.joc.0c01616] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Supramolecular chemistry provides an effective strategy for the molecular recognition of diverse molecules. Significant efforts to design synthetic hosts have enabled the successful binding of many types of guests; however, less is known about how host-guest environments influence binding. Herein, we present a comprehensive study in which we measure the host-guest binding of a bis(arylethynyl phenylurea) host with a chloride guest in eight solvents spanning ET(30) values ranging from nonpolar (40.7 kcal mol-1) to polar (47.4 kcal mol-1). Polar solvents show significantly weaker binding in comparison to nonpolar solvents, and the bulk solvent polarity parameter, ET(30), shows a linear free-energy relationship with respect to the free energy of binding in the host-guest complex. These studies provide a better understanding of how host-guest binding in flexible receptors is governed by their environments and highlight the importance of host reorganization contributions in the free energy of binding. In addition, these studies highlight that preorganization may not be as important as previously thought for weak binding in which enthalpic contributions are smaller versus in polar solvents where solvent effects are magnified.
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Affiliation(s)
- Tobias J. Sherbow
- Department of Chemistry & Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, University of Oregon, Eugene, Oregon 97403-1253, United States
| | - Hazel A. Fargher
- Department of Chemistry & Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, University of Oregon, Eugene, Oregon 97403-1253, United States
| | - Michael M. Haley
- Department of Chemistry & Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, University of Oregon, Eugene, Oregon 97403-1253, United States
| | - Michael D. Pluth
- Department of Chemistry & Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403-1253, United States
| | - Darren W. Johnson
- Department of Chemistry & Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, University of Oregon, Eugene, Oregon 97403-1253, United States
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