1
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Narwal P, Lorz N, Minaei M, Jannin S, Kouřil K, Gossert A, Meier B. Bullet-DNP Enables NMR Spectroscopy of Pyruvate and Amino Acids at Nanomolar to Low Micromolar Concentrations. Anal Chem 2024; 96:14734-14740. [PMID: 39227032 PMCID: PMC11411493 DOI: 10.1021/acs.analchem.4c00618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/05/2024]
Abstract
Hyperpolarized pyruvate is a widely used marker to track metabolism in vivo and a benchmark molecule for hyperpolarization methods. Here, we show how a combination of improved bullet-DNP instrumentation, an optimized sample preparation and a further sensitivity increase via a 13C-1H polarization transfer after dissolution enable the observation of pyruvate at a concentration of 250 nM immediately after dissolution. At this concentration, the experiment employs a total mass of pyruvate of only 20 ng or 180 pmol. If the concentration is increased to 45 μM, pyruvate may be detected 1 min after dissolution with a signal-to-noise ratio exceeding 50. The procedure can be extended to observe a mixture of amino acids at low micromolar concentrations.
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Affiliation(s)
- Pooja Narwal
- Institute of Biological Interfaces 4, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen 76344, Germany
| | - Nils Lorz
- Department of Biology, ETH Zurich, Zürich 8093, Switzerland
| | - Masoud Minaei
- Institute of Biological Interfaces 4, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen 76344, Germany
| | - Sami Jannin
- CRMN UMR-5082, CNRS, ENS Lyon, Universite Claude Bernard Lyon 1, Villeurbanne 69100, France
| | - Karel Kouřil
- Institute of Biological Interfaces 4, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen 76344, Germany
| | - Alvar Gossert
- Department of Biology, ETH Zurich, Zürich 8093, Switzerland
| | - Benno Meier
- Institute of Biological Interfaces 4, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen 76344, Germany
- Institute of Physical Chemistry, Karlsruhe Institute of Technology, Karlsruhe 76131, Germany
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2
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Li S, Bhattacharya S, Chou CY, Chu M, Chou SC, Tonelli M, Goger M, Yang H, Palmer AG, Cavagnero S. LC-Photo-CIDNP hyperpolarization of biomolecules bearing a quasi-isolated spin pair: Magnetic-Field dependence via a rapid-shuttling device. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2024; 359:107616. [PMID: 38271744 PMCID: PMC10922348 DOI: 10.1016/j.jmr.2023.107616] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2023] [Revised: 12/27/2023] [Accepted: 12/28/2023] [Indexed: 01/27/2024]
Abstract
Liquid-state low-concentration photochemically induced dynamic nuclear polarization (LC-photo-CIDNP) is an emerging technology tailored to enhance the sensitivity of NMR spectroscopy via LED- or laser-mediated optical irradiation. LC-photo-CIDNP is particularly useful to detect solvent-exposed aromatic residues (Trp, Tyr), either in isolation or within polypeptides and proteins. This study investigates the magnetic-field dependence of the LC-photo-CIDNP of Trp-α-13C-β,β,2,4,5,6,7-d7, a Trp isotopolog bearing a quasi-isolated 1Hα-13Cαspin pair (QISP). We employed a new rapid-shuttling side-illumination field-cycling device that enables ultra-fast (90-120 ms) vertical movements of NMR samples within the bore of a superconducting magnet. Thus, LC-photo-CIDNP hyperpolarization occurs at low field, while hyperpolarized signals are detected at high field (700 MHz). Resonance lineshapes were excellent, and the effect of several fields (1.18-7.08 T range) on hyperpolarization efficiency could be readily explored. Remarkably, unprecedented LC-photo-CIDNP enhancements ε ≅ 1,200 were obtained at 50 MHz (1.18 T), suggesting exciting avenues to hypersensitive LED-enhanced NMR in liquids at low field.
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Affiliation(s)
- Siyu Li
- Dept. of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, United States
| | | | - Ching-Yu Chou
- Field Cycling Technology LTD., New Taipei City 23444, Taiwan, ROC
| | - Minglee Chu
- Institute of Physics, Academia Sinica, Nankang, Taipei 115, Taiwan, ROC
| | - Shu-Cheng Chou
- Field Cycling Technology LTD., New Taipei City 23444, Taiwan, ROC
| | - Marco Tonelli
- Dept. of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, United States
| | - Michael Goger
- New York Structural Biology Center, New York, NY 10027, United States
| | - Hanming Yang
- Dept. of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, United States
| | - Arthur G Palmer
- New York Structural Biology Center, New York, NY 10027, United States; Dept. of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, United States
| | - Silvia Cavagnero
- Dept. of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, United States.
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3
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Bernarding J, Bruns C, Prediger I, Mützel M, Plaumann M. Detection of sub-nmol amounts of the antiviral drug favipiravir in 19F MRI using photo-chemically induced dynamic nuclear polarization. Sci Rep 2024; 14:1527. [PMID: 38233411 PMCID: PMC10794400 DOI: 10.1038/s41598-024-51454-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Accepted: 01/05/2024] [Indexed: 01/19/2024] Open
Abstract
In biological tissues, 19F magnetic resonance (MR) enables the non-invasive, background-free detection of 19F-containing biomarkers. However, the signal-to-noise ratio (SNR) is usually low because biomarkers are typically present at low concentrations. Measurements at low magnetic fields further reduce the SNR. In a proof-of-principal study we applied LED-based photo-chemically induced dynamic nuclear polarization (photo-CIDNP) to amplify the 19F signal at 0.6 T. For the first time, 19F MR imaging (MRI) and spectroscopy (MRS) of a fully biocompatible model system containing the antiviral drug favipiravir has been successfully performed. This fluorinated drug has been used to treat Ebola and COVID-19. Since the partially cyclic reaction scheme for photo-CIDNP allows for multiple data acquisitions, averaging further improved the SNR. The mean signal gain factor for 19F has been estimated to be in the order of 103. An in-plane resolution of 0.39 × 0.39 mm2 enabled the analysis of spatially varying degrees of hyperpolarization. The minimal detectable amount of favipiravir per voxel was estimated to about 500 pmol. The results show that 19F photo-CIDNP is a promising method for the non-invasive detection of suitable 19F-containing drugs and other compounds with very low levels of the substance.
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Affiliation(s)
- J Bernarding
- Institute of Biometry and Medical Informatics, Otto-von-Guericke University Magdeburg, Leipziger Strasse 44, 39120, Magdeburg, Germany.
| | - C Bruns
- Institute of Biometry and Medical Informatics, Otto-von-Guericke University Magdeburg, Leipziger Strasse 44, 39120, Magdeburg, Germany
| | - I Prediger
- Institute of Biometry and Medical Informatics, Otto-von-Guericke University Magdeburg, Leipziger Strasse 44, 39120, Magdeburg, Germany
| | - M Mützel
- Pure Devices GmbH, 97222, Rimpar, Germany
| | - M Plaumann
- Institute of Biometry and Medical Informatics, Otto-von-Guericke University Magdeburg, Leipziger Strasse 44, 39120, Magdeburg, Germany
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4
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Kuhn LT, Weber S, Bargon J, Parella T, Pérez-Trujillo M. Hyperpolarization-Enhanced NMR Spectroscopy of Unaltered Biofluids Using Photo-CIDNP. Anal Chem 2024; 96:102-109. [PMID: 38109875 PMCID: PMC10782414 DOI: 10.1021/acs.analchem.3c03215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 11/28/2023] [Accepted: 11/29/2023] [Indexed: 12/20/2023]
Abstract
The direct and unambiguous detection and identification of individual metabolite molecules present in complex biological mixtures constitute a major challenge in (bio)analytical research. In this context, nuclear magnetic resonance (NMR) spectroscopy has proven to be particularly powerful owing to its ability to provide both qualitative and quantitative atomic-level information on multiple analytes simultaneously in a noninvasive manner. Nevertheless, NMR suffers from a low inherent sensitivity and, moreover, lacks selectivity regarding the number of individual analytes to be studied in a mixture of a myriad of structurally and chemically very different molecules, e.g., metabolites in a biofluid. Here, we describe a method that circumvents these shortcomings via performing selective, photochemically induced dynamic nuclear polarization (photo-CIDNP) enhanced NMR spectroscopy on unmodified complex biological mixtures, i.e., human urine and serum, which yields a single, background-free one-dimensional NMR spectrum. In doing this, we demonstrate that photo-CIDNP experiments on unmodified complex mixtures of biological origin are feasible, can be performed straightforwardly in the native aqueous medium at physiological metabolite concentrations, and act as a spectral filter, facilitating the analysis of NMR spectra of complex biofluids. Due to its noninvasive nature, the method is fully compatible with state-of-the-art metabolomic protocols providing direct spectroscopic information on a small, carefully selected subset of clinically relevant metabolites. We anticipate that this approach, which, in addition, can be combined with existing high-throughput/high-sensitivity NMR methodology, holds great promise for further in-depth studies and development for use in metabolomics and many other areas of analytical research.
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Affiliation(s)
- Lars T. Kuhn
- Institut
für Physikalische Chemie, Albert-Ludwigs-Universität
Freiburg, Albertstr. 21, 79104 Freiburg i. Br., Germany
| | - Stefan Weber
- Institut
für Physikalische Chemie, Albert-Ludwigs-Universität
Freiburg, Albertstr. 21, 79104 Freiburg i. Br., Germany
| | - Joachim Bargon
- Institut
für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Wegelerstr. 12, 53115 Bonn, Germany
| | - Teodor Parella
- Servei
de Ressonància Magnètica Nuclear, Facultat de Ciències
i Biosciències, Universitat Autònoma
de Barcelona, 08193 Cerdanyola del Vallès, Catalonia, Spain
| | - Míriam Pérez-Trujillo
- Servei
de Ressonància Magnètica Nuclear, Facultat de Ciències
i Biosciències, Universitat Autònoma
de Barcelona, 08193 Cerdanyola del Vallès, Catalonia, Spain
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5
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Stadler GR, Segawa TF, Bütikofer M, Decker V, Loss S, Czarniecki B, Torres F, Riek R. Fragment Screening and Fast Micromolar Detection on a Benchtop NMR Spectrometer Boosted by Photoinduced Hyperpolarization. Angew Chem Int Ed Engl 2023; 62:e202308692. [PMID: 37524651 DOI: 10.1002/anie.202308692] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Revised: 07/28/2023] [Accepted: 07/31/2023] [Indexed: 08/02/2023]
Abstract
Fragment-based drug design is a well-established strategy for rational drug design, with nuclear magnetic resonance (NMR) on high-field spectrometers as the method of reference for screening and hit validation. However, high-field NMR spectrometers are not only expensive, but require specialized maintenance, dedicated space, and depend on liquid helium cooling which became critical over the recurring global helium shortages. We propose an alternative to high-field NMR screening by applying the recently developed approach of fragment screening by photoinduced hyperpolarized NMR on a cryogen-free 80 MHz benchtop NMR spectrometer yielding signal enhancements of up to three orders in magnitude. It is demonstrated that it is possible to discover new hits and kick-off drug design using a benchtop NMR spectrometer at low micromolar concentrations of both protein and ligand. The approach presented performs at higher speed than state-of-the-art high-field NMR approaches while exhibiting a limit of detection in the nanomolar range. Photoinduced hyperpolarization is known to be inexpensive and simple to be implemented, which aligns greatly with the philosophy of benchtop NMR spectrometers. These findings open the way for the use of benchtop NMR in near-physiological conditions for drug design and further life science applications.
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Affiliation(s)
- Gabriela R Stadler
- ETH Zürich, Swiss Federal Institute of Technology, Institute for Molecular Physical Science, Vladimir-Prelog-Weg 2, 8093, Zürich, Switzerland
| | - Takuya F Segawa
- ETH Zürich, Swiss Federal Institute of Technology, Laboratory of Physical Chemistry, Vladimir-Prelog-Weg 2, 8093, Zürich, Switzerland
| | - Matthias Bütikofer
- ETH Zürich, Swiss Federal Institute of Technology, Institute for Molecular Physical Science, Vladimir-Prelog-Weg 2, 8093, Zürich, Switzerland
| | - Venita Decker
- Bruker BioSpin GmbH, Rudolf-Plank-Strasse 23, 76275, Ettlingen, Germany
| | - Sandra Loss
- Bruker Switzerland AG, Industriestrasse 26, 8117, Fällanden, Switzerland
| | - Barbara Czarniecki
- Bruker Switzerland AG, Industriestrasse 26, 8117, Fällanden, Switzerland
| | - Felix Torres
- ETH Zürich, Swiss Federal Institute of Technology, Institute for Molecular Physical Science, Vladimir-Prelog-Weg 2, 8093, Zürich, Switzerland
- NexMR GmbH, Wiesenstrasse 10 A, 8952, Schlieren, Switzerland
| | - Roland Riek
- ETH Zürich, Swiss Federal Institute of Technology, Institute for Molecular Physical Science, Vladimir-Prelog-Weg 2, 8093, Zürich, Switzerland
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6
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Eills J, Budker D, Cavagnero S, Chekmenev EY, Elliott SJ, Jannin S, Lesage A, Matysik J, Meersmann T, Prisner T, Reimer JA, Yang H, Koptyug IV. Spin Hyperpolarization in Modern Magnetic Resonance. Chem Rev 2023; 123:1417-1551. [PMID: 36701528 PMCID: PMC9951229 DOI: 10.1021/acs.chemrev.2c00534] [Citation(s) in RCA: 64] [Impact Index Per Article: 64.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2022] [Indexed: 01/27/2023]
Abstract
Magnetic resonance techniques are successfully utilized in a broad range of scientific disciplines and in various practical applications, with medical magnetic resonance imaging being the most widely known example. Currently, both fundamental and applied magnetic resonance are enjoying a major boost owing to the rapidly developing field of spin hyperpolarization. Hyperpolarization techniques are able to enhance signal intensities in magnetic resonance by several orders of magnitude, and thus to largely overcome its major disadvantage of relatively low sensitivity. This provides new impetus for existing applications of magnetic resonance and opens the gates to exciting new possibilities. In this review, we provide a unified picture of the many methods and techniques that fall under the umbrella term "hyperpolarization" but are currently seldom perceived as integral parts of the same field. Specifically, before delving into the individual techniques, we provide a detailed analysis of the underlying principles of spin hyperpolarization. We attempt to uncover and classify the origins of hyperpolarization, to establish its sources and the specific mechanisms that enable the flow of polarization from a source to the target spins. We then give a more detailed analysis of individual hyperpolarization techniques: the mechanisms by which they work, fundamental and technical requirements, characteristic applications, unresolved issues, and possible future directions. We are seeing a continuous growth of activity in the field of spin hyperpolarization, and we expect the field to flourish as new and improved hyperpolarization techniques are implemented. Some key areas for development are in prolonging polarization lifetimes, making hyperpolarization techniques more generally applicable to chemical/biological systems, reducing the technical and equipment requirements, and creating more efficient excitation and detection schemes. We hope this review will facilitate the sharing of knowledge between subfields within the broad topic of hyperpolarization, to help overcome existing challenges in magnetic resonance and enable novel applications.
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Affiliation(s)
- James Eills
- Institute
for Bioengineering of Catalonia, Barcelona
Institute of Science and Technology, 08028Barcelona, Spain
| | - Dmitry Budker
- Johannes
Gutenberg-Universität Mainz, 55128Mainz, Germany
- Helmholtz-Institut,
GSI Helmholtzzentrum für Schwerionenforschung, 55128Mainz, Germany
- Department
of Physics, UC Berkeley, Berkeley, California94720, United States
| | - Silvia Cavagnero
- Department
of Chemistry, University of Wisconsin, Madison, Madison, Wisconsin53706, United States
| | - Eduard Y. Chekmenev
- Department
of Chemistry, Integrative Biosciences (IBio), Karmanos Cancer Institute
(KCI), Wayne State University, Detroit, Michigan48202, United States
- Russian
Academy of Sciences, Moscow119991, Russia
| | - Stuart J. Elliott
- Molecular
Sciences Research Hub, Imperial College
London, LondonW12 0BZ, United Kingdom
| | - Sami Jannin
- Centre
de RMN à Hauts Champs de Lyon, Université
de Lyon, CNRS, ENS Lyon, Université Lyon 1, 69100Villeurbanne, France
| | - Anne Lesage
- Centre
de RMN à Hauts Champs de Lyon, Université
de Lyon, CNRS, ENS Lyon, Université Lyon 1, 69100Villeurbanne, France
| | - Jörg Matysik
- Institut
für Analytische Chemie, Universität
Leipzig, Linnéstr. 3, 04103Leipzig, Germany
| | - Thomas Meersmann
- Sir
Peter Mansfield Imaging Centre, University Park, School of Medicine, University of Nottingham, NottinghamNG7 2RD, United Kingdom
| | - Thomas Prisner
- Institute
of Physical and Theoretical Chemistry and Center of Biomolecular Magnetic
Resonance, Goethe University Frankfurt, , 60438Frankfurt
am Main, Germany
| | - Jeffrey A. Reimer
- Department
of Chemical and Biomolecular Engineering, UC Berkeley, and Materials Science Division, Lawrence Berkeley National
Laboratory, Berkeley, California94720, United States
| | - Hanming Yang
- Department
of Chemistry, University of Wisconsin, Madison, Madison, Wisconsin53706, United States
| | - Igor V. Koptyug
- International Tomography Center, Siberian
Branch of the Russian Academy
of Sciences, 630090Novosibirsk, Russia
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7
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Li S, Yang H, Hofstetter H, Tonelli M, Cavagnero S. Magnetic-Field Dependence of LC-Photo-CIDNP in the Presence of Target Molecules Carrying a Quasi-Isolated Spin Pair. APPLIED MAGNETIC RESONANCE 2023; 54:59-75. [PMID: 37483563 PMCID: PMC10358788 DOI: 10.1007/s00723-022-01506-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Revised: 09/04/2022] [Accepted: 09/30/2022] [Indexed: 07/25/2023]
Abstract
NMR spectroscopy is well known for its superb resolution, especially at high applied magnetic field. However, the sensitivity of this technique is very low. Liquid-state low-concentration photo-chemically-induced dynamic nuclear polarization (LC-photo-CIDNP) is a promising emerging methodology capable of enhancing NMR sensitivity in solution. LC-photo-CIDNP works well on solvent-exposed Trp and Tyr residues, either in isolation or within proteins. This study explores the magnetic-field dependence of the LC-photo-CIDNP experienced by two tryptophan isotopologs in solution upon in situ LED-mediated optical irradiation. Out of the two uniformly 13C,15N-labeled Trp (Trp-U-13C,15N) and Trp-α-13C-β,β,2,4,5,6,7-d7 species employed here, only the latter bears a quasi-isolated 1Hα-13Cα spin pair. Computer simulations of the predicted polarization due to geminate recombination of both species display a roughly bell-shaped field dependence. However, while Trp-U-13C,15N is predicted to show a maximum at ca. 500 MHz (11.7 T) and a fairly weak field dependence, Trp-α-13C-β,β,2,4,5,6,7-d7 is expected to display a much sharper field dependence accompanied by a dramatic polarization increase at lower field (ca. 200 MHz, 4.7 T). Experimental LC-photo-CIDNP studies on both Trp isotopologs at 1μM concentration, performed at selected fields, are consistent with the theoretical predictions. In summary, this study highlights the prominent field-dependence of LC-photo-CIDNP enhancements (ε ) experienced by Trp isotopologs bearing a quasi-isolated spin pair.
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Affiliation(s)
- Siyu Li
- Department of Chemistry, University of Wisconsin - Madison, 1101 University Ave., Madison, Wisconsin, 53706, USA
| | - Hanming Yang
- Department of Chemistry, University of Wisconsin - Madison, 1101 University Ave., Madison, Wisconsin, 53706, USA
| | - Heike Hofstetter
- Department of Chemistry, University of Wisconsin - Madison, 1101 University Ave., Madison, Wisconsin, 53706, USA
| | - Marco Tonelli
- Department of Biochemistry, University of Wisconsin-Madison, 433 Babcock Drive, Madison, Wisconsin, 53706, USA
| | - Silvia Cavagnero
- Department of Chemistry, University of Wisconsin - Madison, 1101 University Ave., Madison, Wisconsin, 53706, USA
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