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Bravo M, Simón J, González-Recio I, Martinez-Cruz LA, Goikoetxea-Usandizaga N, Martínez-Chantar ML. Magnesium and Liver Metabolism Through the Lifespan. Adv Nutr 2023; 14:739-751. [PMID: 37207838 PMCID: PMC10334155 DOI: 10.1016/j.advnut.2023.05.009] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Revised: 04/24/2023] [Accepted: 05/11/2023] [Indexed: 05/21/2023] Open
Abstract
Within the organism, the liver is the main organ responsible for metabolic homeostasis and xenobiotic transformation. To maintain an adequate liver weight-to-bodyweight ratio, this organ has an extraordinary regenerative capacity and is able to respond to an acute insult or partial hepatectomy. Maintenance of hepatic homeostasis is crucial for the proper functioning of the liver, and in this context, adequate nutrition with macro- and micronutrient intake is mandatory. Among all known macro-minerals, magnesium has a key role in energy metabolism and in metabolic and signaling pathways that maintain liver function and physiology throughout its life span. In the present review, the cation is reported as a potential key molecule during embryogenesis, liver regeneration, and aging. The exact role of the cation during liver formation and regeneration is not fully understood due to its unclear role in the activation and inhibition of those processes, and further research in a developmental context is needed. As individuals age, they may develop hypomagnesemia, a condition that aggravates the characteristic alterations. Additionally, risk of developing liver pathologies increases with age, and hypomagnesemia may be a contributing factor. Therefore, magnesium loss must be prevented by adequate intake of magnesium-rich foods such as seeds, nuts, spinach, or rice to prevent age-related hepatic alterations and contribute to the maintenance of hepatic homeostasis. Since magnesium-rich sources include a variety of foods, a varied and balanced diet can meet both macronutrient and micronutrient needs.
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Affiliation(s)
- Miren Bravo
- Liver Disease Laboratory, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Derio (Bizkaia), Spain
| | - Jorge Simón
- Liver Disease Laboratory, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Derio (Bizkaia), Spain; Center for Biomedical Research in Liver and Digestive Diseases Network (CIBERehd), Bizkaia, Spain
| | - Irene González-Recio
- Liver Disease Laboratory, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Derio (Bizkaia), Spain
| | - Luis Alfonso Martinez-Cruz
- Liver Disease Laboratory, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Derio (Bizkaia), Spain
| | - Naroa Goikoetxea-Usandizaga
- Liver Disease Laboratory, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Derio (Bizkaia), Spain; Center for Biomedical Research in Liver and Digestive Diseases Network (CIBERehd), Bizkaia, Spain.
| | - María Luz Martínez-Chantar
- Liver Disease Laboratory, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Derio (Bizkaia), Spain; Center for Biomedical Research in Liver and Digestive Diseases Network (CIBERehd), Bizkaia, Spain.
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2
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Singh D, Tomar S, Singh S, Chaudhary G, Singh AP, Gupta R. A fluorescent pH switch probe for the ‘turn-on’ dual-channel discriminative detection of magnesium and zinc ions. J Photochem Photobiol A Chem 2023. [DOI: 10.1016/j.jphotochem.2022.114334] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
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3
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Klier PEZ, Gest AMM, Martin JG, Roo R, Navarro MX, Lesiak L, Deal PE, Dadina N, Tyson J, Schepartz A, Miller EW. Bioorthogonal, Fluorogenic Targeting of Voltage-Sensitive Fluorophores for Visualizing Membrane Potential Dynamics in Cellular Organelles. J Am Chem Soc 2022; 144:12138-12146. [PMID: 35776693 DOI: 10.1021/jacs.2c02664] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Electrical potential differences across lipid bilayers play foundational roles in cellular physiology. Plasma membrane voltage is the most widely studied; however, the bilayers of organelles like mitochondria, lysosomes, nuclei, and the endoplasmic reticulum (ER) also provide opportunities for ionic compartmentalization and the generation of transmembrane potentials. Unlike plasma membranes, organellar bilayers, cloistered within the cell, remain recalcitrant to traditional approaches like patch-clamp electrophysiology. To address the challenge of monitoring changes in organelle membrane potential, we describe the design, synthesis, and application of the LUnAR RhoVR (Ligation Unquenched for Activation and Redistribution Rhodamine-based Voltage Reporter) for optically monitoring membrane potential changes in the ER of living cells. We pair a tetrazine-quenched RhoVR for voltage sensing with a transcyclooctene (TCO)-conjugated ceramide (Cer-TCO) for targeting to the ER. Bright fluorescence is observed only at the coincidence of the LUnAR RhoVR and TCO in the ER, minimizing non-specific, off-target fluorescence. We show that the product of the LUnAR RhoVR and Cer-TCO is voltage-sensitive and that the LUnAR RhoVR can be targeted to an intact ER in living cells. Using the LUnAR RhoVR, we use two-color, ER-localized, fast voltage imaging coupled with cytosolic Ca2+ imaging to validate the electroneutrality of Ca2+ release from internal stores. Finally, we use the LUnAR RhoVR to directly visualize functional coupling between the plasma-ER membranes in patch clamped cell lines, providing the first direct evidence of the sign of the ER potential response to plasma membrane potential changes. We envision that the LUnAR RhoVR, along with other existing organelle-targeting TCO probes, could be applied widely for exploring organelle physiology.
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Affiliation(s)
- Pavel E Z Klier
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Anneliese M M Gest
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Julia G Martin
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Ryan Roo
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Marisol X Navarro
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Lauren Lesiak
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Parker E Deal
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Neville Dadina
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Jonathan Tyson
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Alanna Schepartz
- Department of Chemistry, University of California, Berkeley, California 94720, United States.,Department of Molecular & Cell Biology, University of California, Berkeley, California 94720, United States
| | - Evan W Miller
- Department of Chemistry, University of California, Berkeley, California 94720, United States.,Department of Molecular & Cell Biology, University of California, Berkeley, California 94720, United States.,Helen Wills Neuroscience Institute, University of California, Berkeley, California 94720, United States
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4
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Bachollet SPJT, Pietrancosta N, Mallet JM, Dumat B. Fluorogenic and genetic targeting of a red-emitting molecular calcium indicator. Chem Commun (Camb) 2022; 58:6594-6597. [PMID: 35593406 DOI: 10.1039/d2cc01792j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We introduce a strategy for the fluorogenic and genetic targeting of a calcium indicator by combining a protein fluorogen with the BAPTA sensing group. The resulting dual-input probe acts like a fluorescent AND logic gate with a Ca2+-sensitive red emission that is activated only upon reaction with HaloTag with a 25-fold intensity enhancement and can be used for wash-free calcium imaging in HeLa cells. The modular all-molecular design relying on a well-established self-labeling protein tag opens future possibilities for tuning the photophysical properties or targeting different analytes.
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Affiliation(s)
- Sylvestre P J T Bachollet
- Laboratoire des Biomolécules, LBM, Département de Chimie, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France.
| | - Nicolas Pietrancosta
- Laboratoire des Biomolécules, LBM, Département de Chimie, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France. .,Neuroscience Paris Seine - Institut de Biologie Paris Seine (NPS - IBPS) INSERM, CNRS, Sorbonne Université, Paris, France
| | - Jean-Maurice Mallet
- Laboratoire des Biomolécules, LBM, Département de Chimie, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France.
| | - Blaise Dumat
- Laboratoire des Biomolécules, LBM, Département de Chimie, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France.
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5
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Dou WT, Han HH, Sedgwick AC, Zhu GB, Zang Y, Yang XR, Yoon J, James TD, Li J, He XP. Fluorescent probes for the detection of disease-associated biomarkers. Sci Bull (Beijing) 2022; 67:853-878. [PMID: 36546238 DOI: 10.1016/j.scib.2022.01.014] [Citation(s) in RCA: 57] [Impact Index Per Article: 28.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 12/30/2021] [Accepted: 01/04/2022] [Indexed: 01/10/2023]
Abstract
Fluorescent probes have emerged as indispensable chemical tools to the field of chemical biology and medicine. The ability to detect intracellular species and monitor physiological processes has not only advanced our knowledge in biology but has provided new approaches towards disease diagnosis. In this review, we detail the design criteria and strategies for some recently reported fluorescent probes that can detect a wide range of biologically important species in cells and in vivo. In doing so, we highlight the importance of each biological species and their role in biological systems and for disease progression. We then discuss the current problems and challenges of existing technologies and provide our perspective on the future directions of the research area. Overall, we hope this review will provide inspiration for researchers and prove as useful guide for the development of the next generation of fluorescent probes.
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Affiliation(s)
- Wei-Tao Dou
- Key Laboratory for Advanced Materials and Joint International Research Laboratory of Precision Chemistry and Molecular Engineering, Feringa Nobel Prize Scientist Joint Research Center, Frontiers Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, China
| | - Hai-Hao Han
- Key Laboratory for Advanced Materials and Joint International Research Laboratory of Precision Chemistry and Molecular Engineering, Feringa Nobel Prize Scientist Joint Research Center, Frontiers Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, China
| | - Adam C Sedgwick
- Department of Chemistry, The University of Texas at Austin, Austin, TX 78712-1224, USA
| | - Guo-Biao Zhu
- Key Laboratory for Advanced Materials and Joint International Research Laboratory of Precision Chemistry and Molecular Engineering, Feringa Nobel Prize Scientist Joint Research Center, Frontiers Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, China
| | - Yi Zang
- National Center for Drug Screening, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai 201203, China
| | - Xin-Rong Yang
- Department of Liver Surgery & Transplantation, Liver Cancer Institute, Zhongshan Hospital, Fudan University, Key Laboratory of Carcinogenesis and Cancer Invasion, Ministry of Education, Shanghai 200032, China.
| | - Juyoung Yoon
- Department of Chemistry and Nanoscience, Ewha Womans University, Seoul 03760, Republic of Korea.
| | - Tony D James
- Department of Chemistry, University of Bath, Bath BA2 7AY, UK; School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang 453007, China.
| | - Jia Li
- National Center for Drug Screening, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai 201203, China.
| | - Xiao-Peng He
- Key Laboratory for Advanced Materials and Joint International Research Laboratory of Precision Chemistry and Molecular Engineering, Feringa Nobel Prize Scientist Joint Research Center, Frontiers Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, China.
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6
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Meng Q, Wu M, Shang Z, Zhang Z, Zhang R. Responsive gadolinium(III) complex-based small molecule magnetic resonance imaging probes: Design, mechanism and application. Coord Chem Rev 2022. [DOI: 10.1016/j.ccr.2021.214398] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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7
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Li L, Ding Y, Zhang C, Xian H, Chen S, Dai G, Wang X, Ye C. Ratiometric Fluorescence Detection of Mg 2+ Based on Regulating Crown-Ether Modified Annihilators for Triplet–Triplet Annihilation Upconversion. J Phys Chem B 2022; 126:3276-3282. [DOI: 10.1021/acs.jpcb.2c00928] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Lin Li
- School of Materials Science and Engineering, Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou, 215009, P. R. China
| | - Yilei Ding
- School of Materials Science and Engineering, Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou, 215009, P. R. China
| | - Chun Zhang
- School of Materials Science and Engineering, Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou, 215009, P. R. China
| | - Haiyu Xian
- School of Materials Science and Engineering, Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou, 215009, P. R. China
| | - Shuoran Chen
- School of Materials Science and Engineering, Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou, 215009, P. R. China
| | - Guoliang Dai
- School of Chemistry and Life Sciences, Suzhou University of Science and Technology, Suzhou, 215009, P.R. China
| | - Xiaomei Wang
- School of Materials Science and Engineering, Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou, 215009, P. R. China
| | - Changqing Ye
- School of Materials Science and Engineering, Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou, 215009, P. R. China
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8
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Kowada T, Mizukami S. Fluorescent Probes for the Quantification of Labile Metal Ions in Living Cells. J SYN ORG CHEM JPN 2021. [DOI: 10.5059/yukigoseikyokaishi.79.1020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
| | - Shin Mizukami
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University
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9
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10
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Graziotto ME, Adair LD, Kaur A, Vérité P, Ball SR, Sunde M, Jacquemin D, New EJ. Versatile naphthalimide tetrazines for fluorogenic bioorthogonal labelling. RSC Chem Biol 2021; 2:1491-1498. [PMID: 34704054 PMCID: PMC8496007 DOI: 10.1039/d1cb00128k] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2021] [Accepted: 06/24/2021] [Indexed: 12/21/2022] Open
Abstract
Fluorescent probes for biological imaging have revealed much about the functions of biomolecules in health and disease. Fluorogenic probes, which are fluorescent only upon a bioorthogonal reaction with a specific partner, are particularly advantageous as they ensure that fluorescent signals observed in biological imaging arise solely from the intended target. In this work, we report the first series of naphthalimide tetrazines for bioorthogonal fluorogenic labelling. We establish that all of these compounds can be used for imaging through photophysical, analytical and biological studies. The best candidate was Np6mTz, where the tetrazine ring is appended to the naphthalimide at its 6-position via a phenyl linker in a meta configuration. Taking our synthetic scaffold, we generated two targeted variants, LysoNpTz and MitoNpTz, which successfully localized within the lysosomes and mitochondria respectively, without the requirement of genetic modification. In addition, the naphthalimide tetrazine system was used for the no-wash imaging of insulin amyloid fibrils in vitro, providing a new method that can monitor their growth kinetics and morphology. Since our synthetic approach is simple and modular, these new naphthalimide tetrazines provide a novel scaffold for a range of bioorthogonal tetrazine-based imaging agents for selective staining and sensing of biomolecules.
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Affiliation(s)
- Marcus E Graziotto
- The University of Sydney, School of Chemistry NSW 2006 Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney NSW 2006 Australia
| | - Liam D Adair
- The University of Sydney, School of Chemistry NSW 2006 Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney NSW 2006 Australia
| | - Amandeep Kaur
- The University of Sydney, School of Medical Sciences, Faculty of Medicine and Health NSW 2006 Australia
- The University of Sydney Nano Institute (Sydney Nano), The University of Sydney NSW 2006 Australia
| | | | - Sarah R Ball
- The University of Sydney, School of Medical Sciences, Faculty of Medicine and Health NSW 2006 Australia
| | - Margaret Sunde
- The University of Sydney, School of Medical Sciences, Faculty of Medicine and Health NSW 2006 Australia
- The University of Sydney Nano Institute (Sydney Nano), The University of Sydney NSW 2006 Australia
| | | | - Elizabeth J New
- The University of Sydney, School of Chemistry NSW 2006 Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney NSW 2006 Australia
- The University of Sydney Nano Institute (Sydney Nano), The University of Sydney NSW 2006 Australia
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11
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Hiruta Y, Shindo Y, Oka K, Citterio D. Small Molecule-based Alkaline-earth Metal Ion Fluorescent Probes for Imaging Intracellular and Intercellular Multiple Signals. CHEM LETT 2021. [DOI: 10.1246/cl.200917] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Yuki Hiruta
- Department of Applied Chemistry, Faculty of Science and Technology, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama, Kanagawa 223-8522, Japan
| | - Yutaka Shindo
- Department of Biosciences and Informatics, Faculty of Science and Technology, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama, Kanagawa 223-8522, Japan
| | - Kotaro Oka
- Department of Biosciences and Informatics, Faculty of Science and Technology, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama, Kanagawa 223-8522, Japan
| | - Daniel Citterio
- Department of Applied Chemistry, Faculty of Science and Technology, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama, Kanagawa 223-8522, Japan
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12
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Fiorentini D, Cappadone C, Farruggia G, Prata C. Magnesium: Biochemistry, Nutrition, Detection, and Social Impact of Diseases Linked to Its Deficiency. Nutrients 2021; 13:1136. [PMID: 33808247 PMCID: PMC8065437 DOI: 10.3390/nu13041136] [Citation(s) in RCA: 107] [Impact Index Per Article: 35.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Revised: 03/23/2021] [Accepted: 03/26/2021] [Indexed: 12/11/2022] Open
Abstract
Magnesium plays an important role in many physiological functions. Habitually low intakes of magnesium and in general the deficiency of this micronutrient induce changes in biochemical pathways that can increase the risk of illness and, in particular, chronic degenerative diseases. The assessment of magnesium status is consequently of great importance, however, its evaluation is difficult. The measurement of serum magnesium concentration is the most commonly used and readily available method for assessing magnesium status, even if serum levels have no reliable correlation with total body magnesium levels or concentrations in specific tissues. Therefore, this review offers an overview of recent insights into magnesium from multiple perspectives. Starting from a biochemical point of view, it aims at highlighting the risk due to insufficient uptake (frequently due to the low content of magnesium in the modern western diet), at suggesting strategies to reach the recommended dietary reference values, and at focusing on the importance of detecting physiological or pathological levels of magnesium in various body districts, in order to counteract the social impact of diseases linked to magnesium deficiency.
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Affiliation(s)
| | | | - Giovanna Farruggia
- Department of Pharmacy and Biotechnology, Alma Mater Studiorum—University of Bologna, 40126 Bologna, Italy; (D.F.); (C.C.); (C.P.)
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13
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14
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Pinto‐Pacheco B, Carbery WP, Khan S, Turner DB, Buccella D. Fluorescence Quenching Effects of Tetrazines and Their Diels–Alder Products: Mechanistic Insight Toward Fluorogenic Efficiency. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202008757] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Brismar Pinto‐Pacheco
- Department of Chemistry New York University 100 Washington Square East New York NY 10003 USA
| | - William P. Carbery
- Department of Chemistry New York University 100 Washington Square East New York NY 10003 USA
| | - Sameer Khan
- Department of Chemistry New York University 100 Washington Square East New York NY 10003 USA
| | - Daniel B. Turner
- Department of Chemistry New York University 100 Washington Square East New York NY 10003 USA
- Current address: Micron School of Materials Science and Engineering Boise State University Boise ID 83725 USA
| | - Daniela Buccella
- Department of Chemistry New York University 100 Washington Square East New York NY 10003 USA
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15
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Pinto-Pacheco B, Carbery WP, Khan S, Turner DB, Buccella D. Fluorescence Quenching Effects of Tetrazines and Their Diels-Alder Products: Mechanistic Insight Toward Fluorogenic Efficiency. Angew Chem Int Ed Engl 2020; 59:22140-22149. [PMID: 33245600 DOI: 10.1002/anie.202008757] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2020] [Revised: 06/22/2020] [Indexed: 12/22/2022]
Abstract
Inverse electron demand Diels-Alder reactions between s-tetrazines and strained dienophiles have numerous applications in fluorescent labeling of biomolecules. Herein, we investigate the effect of the dienophile on the fluorescence enhancement obtained upon reaction with a tetrazine-quenched fluorophore and study the possible mechanisms of fluorescence quenching by both the tetrazine and its reaction products. The dihydropyridazine obtained from reaction with a strained cyclooctene shows a residual fluorescence quenching effect, greater than that exerted by the pyridazine arising from reaction with the analogous alkyne. Linear and ultrabroadband two-dimensional electronic spectroscopy experiments reveal that resonance energy transfer is the mechanism responsible for the fluorescence quenching effect of tetrazines, whereas a mechanism involving more intimate electronic coupling, likely photoinduced electron transfer, is responsible for the quenching effect of the dihydropyridazine. These studies uncover parameters that can be tuned to maximize fluorogenic efficiency in bioconjugation reactions and reveal that strained alkynes are better reaction partners for achieving maximum contrast ratio.
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Affiliation(s)
- Brismar Pinto-Pacheco
- Department of Chemistry, New York University, 100 Washington Square East, New York, NY, 10003, USA
| | - William P Carbery
- Department of Chemistry, New York University, 100 Washington Square East, New York, NY, 10003, USA
| | - Sameer Khan
- Department of Chemistry, New York University, 100 Washington Square East, New York, NY, 10003, USA
| | - Daniel B Turner
- Department of Chemistry, New York University, 100 Washington Square East, New York, NY, 10003, USA.,Current address: Micron School of Materials Science and Engineering, Boise State University, Boise, ID, 83725, USA
| | - Daniela Buccella
- Department of Chemistry, New York University, 100 Washington Square East, New York, NY, 10003, USA
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16
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Macias‐Contreras M, Zhu L. The Collective Power of Genetically Encoded Protein/Peptide Tags and Bioorthogonal Chemistry in Biological Fluorescence Imaging. CHEMPHOTOCHEM 2020. [DOI: 10.1002/cptc.202000215] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Miguel Macias‐Contreras
- Department of Chemistry and Biochemistry Florida State University 95 Chieftan Way Tallahassee FL 32306-4390 USA
| | - Lei Zhu
- Department of Chemistry and Biochemistry Florida State University 95 Chieftan Way Tallahassee FL 32306-4390 USA
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17
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Kowada T, Watanabe T, Amagai Y, Liu R, Yamada M, Takahashi H, Matsui T, Inaba K, Mizukami S. Quantitative Imaging of Labile Zn 2+ in the Golgi Apparatus Using a Localizable Small-Molecule Fluorescent Probe. Cell Chem Biol 2020; 27:1521-1531.e8. [PMID: 32997976 DOI: 10.1016/j.chembiol.2020.09.003] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2020] [Revised: 06/16/2020] [Accepted: 09/08/2020] [Indexed: 12/15/2022]
Abstract
Fluorescent Zn2+ probes used for the quantitative analysis of labile Zn2+ concentration ([Zn2+]) in target organelles are crucial for understanding the role of Zn2+ in biological processes. Although several fluorescent Zn2+ probes have been developed to date, there is still a lack of consensus concerning the [Zn2+] in intracellular organelles. In this study, we describe the development of ZnDA-1H, a small-molecule fluorescent probe for Zn2+, which exhibits less pH sensitivity, high Zn2+ selectivity, and large fluorescence enhancement upon binding to Zn2+. Through protein labeling technology, ZnDA-1H was precisely targeted in various intracellular organelles, such as the nucleus, mitochondria, endoplasmic reticulum, and Golgi apparatus. ZnDA-1H exhibited a reversible fluorescence response toward labile Zn2+ in these organelles in live cells. Using this probe, the [Zn2+] in the Golgi apparatus was estimated to be 25 ± 1 nM, suggesting that labile Zn2+ plays a physiological role in the secretory pathway.
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Affiliation(s)
- Toshiyuki Kowada
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, Miyagi 980-8577, Japan; Department of Molecular and Chemical Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi 980-8577, Japan; Department of Chemistry, Graduate School of Science, Tohoku University, Sendai, Miyagi 980-8578, Japan
| | - Tomomi Watanabe
- Department of Molecular and Chemical Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi 980-8577, Japan
| | - Yuta Amagai
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, Miyagi 980-8577, Japan
| | - Rong Liu
- Department of Molecular and Chemical Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi 980-8577, Japan
| | - Momo Yamada
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai, Miyagi 980-8578, Japan
| | - Hiroto Takahashi
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, Miyagi 980-8577, Japan
| | - Toshitaka Matsui
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, Miyagi 980-8577, Japan; Department of Molecular and Chemical Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi 980-8577, Japan; Department of Chemistry, Graduate School of Science, Tohoku University, Sendai, Miyagi 980-8578, Japan
| | - Kenji Inaba
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, Miyagi 980-8577, Japan; Department of Molecular and Chemical Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi 980-8577, Japan; Department of Chemistry, Graduate School of Science, Tohoku University, Sendai, Miyagi 980-8578, Japan
| | - Shin Mizukami
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, Miyagi 980-8577, Japan; Department of Molecular and Chemical Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi 980-8577, Japan; Department of Chemistry, Graduate School of Science, Tohoku University, Sendai, Miyagi 980-8578, Japan.
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18
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Straková K, López-Andarias J, Jiménez-Rojo N, Chambers JE, Marciniak SJ, Riezman H, Sakai N, Matile S. HaloFlippers: A General Tool for the Fluorescence Imaging of Precisely Localized Membrane Tension Changes in Living Cells. ACS CENTRAL SCIENCE 2020; 6:1376-1385. [PMID: 32875078 PMCID: PMC7453570 DOI: 10.1021/acscentsci.0c00666] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2020] [Indexed: 05/03/2023]
Abstract
Tools to image membrane tension in response to mechanical stimuli are badly needed in mechanobiology. We have recently introduced mechanosensitive flipper probes to report quantitatively global membrane tension changes in fluorescence lifetime imaging microscopy (FLIM) images of living cells. However, to address specific questions on physical forces in biology, the probes need to be localized precisely in the membrane of interest (MOI). Herein we present a general strategy to image the tension of the MOI by tagging our newly introduced HaloFlippers to self-labeling HaloTags fused to proteins in this membrane. The critical challenge in the construction of operational HaloFlippers is the tether linking the flipper and the HaloTag: It must be neither too taut nor too loose, be hydrophilic but lipophilic enough to passively diffuse across membranes to reach the HaloTags, and allow partitioning of flippers into the MOI after the reaction. HaloFlippers with the best tether show localized and selective fluorescence after reacting with HaloTags that are close enough to the MOI but remain nonemissive if the MOI cannot be reached. Their fluorescence lifetime in FLIM images varies depending on the nature of the MOI and responds to myriocin-mediated sphingomyelin depletion as well as to osmotic stress. The response to changes in such precisely localized membrane tension follows the validated principles, thus confirming intact mechanosensitivity. Examples covered include HaloTags in the Golgi apparatus, peroxisomes, endolysosomes, and the ER, all thus becoming accessible to the selective fluorescence imaging of membrane tension.
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Affiliation(s)
- Karolína Straková
- School
of Chemistry and Biochemistry and National Centre of Competence in
Research (NCCR) Chemical Biology, University
of Geneva, Geneva 1211, Switzerland
| | - Javier López-Andarias
- School
of Chemistry and Biochemistry and National Centre of Competence in
Research (NCCR) Chemical Biology, University
of Geneva, Geneva 1211, Switzerland
- (J.L.-A.)
| | - Noemi Jiménez-Rojo
- School
of Chemistry and Biochemistry and National Centre of Competence in
Research (NCCR) Chemical Biology, University
of Geneva, Geneva 1211, Switzerland
| | - Joseph E. Chambers
- Cambridge
Institute for Medical Research, University
of Cambridge, Cambridge CB2 0XY, United Kingdom
| | - Stefan J. Marciniak
- Cambridge
Institute for Medical Research, University
of Cambridge, Cambridge CB2 0XY, United Kingdom
| | - Howard Riezman
- School
of Chemistry and Biochemistry and National Centre of Competence in
Research (NCCR) Chemical Biology, University
of Geneva, Geneva 1211, Switzerland
| | - Naomi Sakai
- School
of Chemistry and Biochemistry and National Centre of Competence in
Research (NCCR) Chemical Biology, University
of Geneva, Geneva 1211, Switzerland
| | - Stefan Matile
- School
of Chemistry and Biochemistry and National Centre of Competence in
Research (NCCR) Chemical Biology, University
of Geneva, Geneva 1211, Switzerland
- (S.M.)
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19
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Lazarou TS, Buccella D. Advances in imaging of understudied ions in signaling: A focus on magnesium. Curr Opin Chem Biol 2020; 57:27-33. [PMID: 32408221 PMCID: PMC7483230 DOI: 10.1016/j.cbpa.2020.04.002] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Accepted: 04/01/2020] [Indexed: 12/21/2022]
Abstract
The study of metal ions in the context of cell signaling has historically focused mainly on Ca2+, the second messenger par excellence. But recent studies support an emerging paradigm in which other metals, including magnesium and d-block metals, play a role in signal transduction as well. Armed with the right indicators, fluorescence microscopy offers a unique combination of spatial and temporal resolution perfectly suited to reveal metal transients in real time, while also helping identify possible sources of ion mobilization and molecular targets. With a focus on Mg2+, we highlight recent advancements in the development of molecular indicators and imaging strategies for the study of metal ions in signaling. We discuss remaining conceptual and technical challenges in the field, and we illustrate through the case of Mg2+ how the study of nontraditional ions in signaling is inspiring technological developments applicable more broadly to the study of metals in biology.
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Affiliation(s)
- Tomas S Lazarou
- Department of Chemistry, New York University, New York, NY, 10003, USA
| | - Daniela Buccella
- Department of Chemistry, New York University, New York, NY, 10003, USA.
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20
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Erdoğan M, Daştan A. Design, synthesis, and characterization of a new class of efficient dihydropyridazine-dibenzosuberenone derived fluorescent dyes and investigation of their some photophysical properties. Tetrahedron 2020. [DOI: 10.1016/j.tet.2020.131271] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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21
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Macias-Contreras M, He H, Little KN, Lee JP, Campbell RP, Royzen M, Zhu L. SNAP/CLIP-Tags and Strain-Promoted Azide–Alkyne Cycloaddition (SPAAC)/Inverse Electron Demand Diels–Alder (IEDDA) for Intracellular Orthogonal/Bioorthogonal Labeling. Bioconjug Chem 2020; 31:1370-1381. [DOI: 10.1021/acs.bioconjchem.0c00107] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Miguel Macias-Contreras
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306-4390, United States
| | - Huan He
- Translational Science Laboratory, College of Medicine, Florida State University, Tallahassee, Florida 32306-4300, United States
- Institute of Molecular Biophysics, Florida State University, Tallahassee, Florida 32306-4380, United States
| | - Kevin N. Little
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306-4390, United States
| | - Justin P. Lee
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306-4390, United States
| | - Ryan P. Campbell
- Institute of Molecular Biophysics, Florida State University, Tallahassee, Florida 32306-4380, United States
| | - Maksim Royzen
- Department of Chemistry, University at Albany, 1400 Washington Avenue, Albany, New York 12222, United States
| | - Lei Zhu
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306-4390, United States
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22
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Zastrow ML, Huang Z, Lippard SJ. HaloTag-Based Hybrid Targetable and Ratiometric Sensors for Intracellular Zinc. ACS Chem Biol 2020; 15:396-406. [PMID: 31917534 DOI: 10.1021/acschembio.9b00872] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
We report a new series of small molecule-protein hybrid zinc sensors that combine genetic targetability with the spectroscopic profile of synthetic fluorophores. We functionalized the zinc sensor ZinPyr-1 (ZP1) with a chloroalkane linker (ZP1-12Cl) that reacts specifically with the engineered protein HaloTag. The resulting construct, ZP1-HaloTag, binds zinc ions with a threefold fluorescence enhancement. Through exploitation of the protein synthesis machinery of live cells, the HaloTag protein component was expressed, and the ZP1-HaloTag hybrid was assembled upon bath application of ZP1-12Cl. After fusion of HaloTag with targeting peptides or proteins, the resulting hybrid sensor could be directed to specific subcellular locales, including the nucleus, mitochondrial outer membrane, and endoplasmic reticulum. Furthermore, HaloTag was linked with the red fluorescent protein mCherry, permitting formation of a two-fluorophore system that provides not only targetable but also ratiometric sensing of cellular zinc. This system reversibly detects both exogenous and endogenous mobile Zn2+ in response to reactive nitrogen species in live HeLa cells. HaloTag-based hybrid zinc sensors offer new opportunities for visualizing and quantifying biological mobile zinc at discrete subcellular compartments.
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Affiliation(s)
- Melissa L Zastrow
- Department of Chemistry , Massachusetts Institute of Technology , Cambridge , Massachusetts 02139 , United States
| | - Zhen Huang
- Department of Chemistry , Massachusetts Institute of Technology , Cambridge , Massachusetts 02139 , United States
| | - Stephen J Lippard
- Department of Chemistry , Massachusetts Institute of Technology , Cambridge , Massachusetts 02139 , United States
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23
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Murata O, Shindo Y, Ikeda Y, Iwasawa N, Citterio D, Oka K, Hiruta Y. Near-Infrared Fluorescent Probes for Imaging of Intracellular Mg 2+ and Application to Multi-Color Imaging of Mg 2+, ATP, and Mitochondrial Membrane Potential. Anal Chem 2019; 92:966-974. [PMID: 31724392 DOI: 10.1021/acs.analchem.9b03872] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
The magnesium ion (Mg2+) is an essential cation to maintain proper cellular activities. To visualize the dynamics and functions of Mg2+, there is a great need for the development of Mg2+-selective fluorescent probes. However, conventional Mg2+ fluorescent probes are falling behind in low selectivity and poor fluorescence color variation. In this report, to make available a distinct color window for multi-color imaging, we designed and synthesized highly Mg2+-selective and near-infrared (NIR) fluorescent probes, the KMG-500 series consisting of a charged β-diketone as a selective binding site for Mg2+ and a Si-rhodamine residue as the NIR fluorophore, which showed photoinduced electron transfer (PeT)-type OFF-ON response to the concentration of Mg2+. Two types of KMG-500 series probes, tetramethyl substituted Si-rhodamine KMG-501 and tetraethyl substituted Si-rhodamine KMG-502, were synthesized for the evaluation of cell permeability. For intracellular application, the membrane-permeable acetoxymethyl derivative KMG-501 (KMG-501AM) was synthesized and allowed to stably stain cultured rat hippocampal neurons during imaging of intracellular Mg2+. On the other hand, KMG-502 was cell membrane permeable without AM modification, preventing the probe from staying inside cells during imaging. KMG-501 distributed mainly in the cytoplasm and partially localized in lysosomes and mitochondria in cultured rat hippocampal neurons. Mg2+ increase in response to the FCCP uncoupler inducing depolarization of the mitochondrial inner membrane potential was detected in the KMG-501 stained neurons. For the first time, KMG-501 succeeded in imaging intracellular Mg2+ dynamics with NIR fluorescence. Moreover, it allows one to simultaneously visualize changes in Mg2+ and ATP concentration and also mitochondrial inner membrane potential and their interactions. This probe is expected to be a strong tool for multi-color imaging of intracellular Mg2+.
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Affiliation(s)
- Osamu Murata
- Department of Applied Chemistry , Keio University , 3-14-1 Hiyoshi, Kohoku-ku , Yokohama , Kanagawa , Japan
| | - Yutaka Shindo
- Department of Biosciences and Informatics , Keio University , 3-14-1 Hiyoshi, Kohoku-ku , Yokohama , Kanagawa , Japan
| | - Yuma Ikeda
- Department of Applied Chemistry , Keio University , 3-14-1 Hiyoshi, Kohoku-ku , Yokohama , Kanagawa , Japan
| | - Naoko Iwasawa
- Department of Applied Chemistry , Keio University , 3-14-1 Hiyoshi, Kohoku-ku , Yokohama , Kanagawa , Japan
| | - Daniel Citterio
- Department of Applied Chemistry , Keio University , 3-14-1 Hiyoshi, Kohoku-ku , Yokohama , Kanagawa , Japan
| | - Kotaro Oka
- Department of Biosciences and Informatics , Keio University , 3-14-1 Hiyoshi, Kohoku-ku , Yokohama , Kanagawa , Japan.,Graduate Institute of Medicine, College of Medicine , Kaohsiung Medical University , Kaohsiung , Taiwan.,Waseda Research Institute for Science and Engineering , 2-2 Wakamatsucho , Shinjuku , Tokyo , Japan
| | - Yuki Hiruta
- Department of Applied Chemistry , Keio University , 3-14-1 Hiyoshi, Kohoku-ku , Yokohama , Kanagawa , Japan
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24
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Carbery WP, Pinto-Pacheco B, Buccella D, Turner DB. Resolving the Fluorescence Quenching Mechanism of an Oxazine Dye Using Ultrabroadband Two-Dimensional Electronic Spectroscopy. J Phys Chem A 2019; 123:5072-5080. [DOI: 10.1021/acs.jpca.9b03632] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- William P. Carbery
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, United States
| | - Brismar Pinto-Pacheco
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, United States
| | - Daniela Buccella
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, United States
| | - Daniel B. Turner
- Department of Chemistry, New York University, 100 Washington Square East, New York, New York 10003, United States
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25
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Treadwell R, de Moliner F, Subiros-Funosas R, Hurd T, Knox K, Vendrell M. A fluorescent activatable probe for imaging intracellular Mg 2+ . Org Biomol Chem 2019; 16:239-244. [PMID: 29256562 PMCID: PMC5789582 DOI: 10.1039/c7ob02965a] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
An BODIPY probe for detection and imaging of Mg2+ without interference from Ca2+ is described.
An activatable BODIPY probe for in vitro detection and fluorescence cell imaging of free Mg2+ without interference from Ca2+ is described. Fluorescence amplification of the probe is observed upon detection of physiological concentrations of Mg2+ due to reduced rotation of the fluorophore and effective chelation by a quinolizine-based core.
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Affiliation(s)
- Ryan Treadwell
- Medical Research Council Centre for Inflammation Research, The University of Edinburgh, EH16 4TJ Edinburgh, UK.
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26
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Lin Q, Buccella D. Highly Selective, Red Emitting BODIPY-Based Fluorescent Indicators for Intracellular Mg 2+ Imaging. J Mater Chem B 2018; 6:7247-7256. [PMID: 30740225 PMCID: PMC6366848 DOI: 10.1039/c8tb01599f] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Most fluorescent indicators for Mg2+ suffer from poor selectivity against other divalent cations, especially Ca2+, thus do not provide reliable information on cellular Mg2+ concentrations in processes in which such metals are involved. We report a new set of highly selective fluorescent indicators based on alkoxystyryl-functionalized BODIPY fluorophores decorated with a 4-oxo-4H-quinolizine-3-carboxylic acid metal binding moiety. The new sensors, MagQ1 and MagQ2, display absorption and emission maxima above 600 nm, with a 29-fold fluorescence enhancement and good quantum yields (Φ > 0.3) upon coordination of Mg2+ in aqueous buffer. Fluorescence response to Mg2+ is not affected by the presence of competing divalent cations typically present in the cellular milieu, and displays minimal pH dependence in the physiologically relevant range. The choice of alkoxy groups decorating the styryl BODIPY core does not influence the basic photophysical and metal binding properties of the compounds, but has a marked effect on their intracellular retention and thus in their applicability for detection of cellular Mg2+ by fluorescence imaging. In particular, we demonstrate the utility of a triethyleneglycol (TEG) functionalization tactic that endows MagQ2 with superior cellular retention in live cells by reducing active extrusion through organic anion transporters, which are thought to cause fast leakage of typical anionic dyes. With enhanced retention and excellent photophysical properties, MagQ2 can be applied in the detection of cellular Mg2+ influx without interference of high concentrations of Ca2+ akin to those involved in signaling.
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Affiliation(s)
- Qitian Lin
- Department of Chemistry New York University, NY 10003, USA
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27
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Stauffer W, Sheng H, Lim HN. EzColocalization: An ImageJ plugin for visualizing and measuring colocalization in cells and organisms. Sci Rep 2018; 8:15764. [PMID: 30361629 PMCID: PMC6202351 DOI: 10.1038/s41598-018-33592-8] [Citation(s) in RCA: 163] [Impact Index Per Article: 27.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2018] [Accepted: 10/01/2018] [Indexed: 02/07/2023] Open
Abstract
Insight into the function and regulation of biological molecules can often be obtained by determining which cell structures and other molecules they localize with (i.e. colocalization). Here we describe an open source plugin for ImageJ called EzColocalization to visualize and measure colocalization in microscopy images. EzColocalization is designed to be easy to use and customize for researchers with minimal experience in quantitative microscopy and computer programming. Features of EzColocalization include: (i) tools to select individual cells and organisms from images; (ii) filters to select specific types of cells and organisms based on physical parameters and signal intensity; (iii) heat maps and scatterplots to visualize the localization patterns of reporters; (iv) multiple metrics to measure colocalization for two or three reporters; (v) metric matrices to systematically measure colocalization at multiple combinations of signal intensity thresholds; and (vi) data tables that provide detailed information on each cell in a sample. These features make EzColocalization well-suited for experiments with low reporter signal, complex patterns of localization, and heterogeneous populations of cells and organisms.
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Affiliation(s)
- Weston Stauffer
- Department of Integrative Biology, University of California Berkeley, Berkeley, CA, USA
| | - Huanjie Sheng
- Department of Integrative Biology, University of California Berkeley, Berkeley, CA, USA
| | - Han N Lim
- Department of Integrative Biology, University of California Berkeley, Berkeley, CA, USA.
- Atomwise Inc., San Francisco, CA, USA.
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28
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Gautier A, Tebo AG. Fluorogenic Protein‐Based Strategies for Detection, Actuation, and Sensing. Bioessays 2018; 40:e1800118. [DOI: 10.1002/bies.201800118] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Revised: 08/01/2018] [Indexed: 01/02/2023]
Affiliation(s)
- Arnaud Gautier
- PASTEUR, Département de Chimie, École Normale SupérieurePSL University, Sorbonne Université, CNRS75005 ParisFrance
| | - Alison G. Tebo
- PASTEUR, Département de Chimie, École Normale SupérieurePSL University, Sorbonne Université, CNRS75005 ParisFrance
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29
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Jiménez-Sánchez A, Lei EK, Kelley SO. A Multifunctional Chemical Probe for the Measurement of Local Micropolarity and Microviscosity in Mitochondria. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201802796] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Arturo Jiménez-Sánchez
- Department of Biochemistry; Faculty of Medicine; University of Toronto; Toronto Ontario M5S 1A8 Canada
| | - Eric K. Lei
- Department of Biochemistry; Faculty of Medicine; University of Toronto; Toronto Ontario M5S 1A8 Canada
| | - Shana O. Kelley
- Department of Biochemistry; Faculty of Medicine; University of Toronto; Toronto Ontario M5S 1A8 Canada
- Department of Pharmaceutical Sciences; Leslie Dan Faculty of Pharmacy; Institute for Biomedical and Biomaterials Engineering; Departments of Biochemistry and Chemistry; University of Toronto; Toronto Ontario M5S 1A8 Canada
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30
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Jiménez-Sánchez A, Lei EK, Kelley SO. A Multifunctional Chemical Probe for the Measurement of Local Micropolarity and Microviscosity in Mitochondria. Angew Chem Int Ed Engl 2018; 57:8891-8895. [PMID: 29808513 DOI: 10.1002/anie.201802796] [Citation(s) in RCA: 106] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2018] [Revised: 05/06/2018] [Indexed: 12/13/2022]
Abstract
The measurement of physicochemical parameters in living cells can provide information on individual cellular organelles, helping us to understand subcellular function in health and disease. While organelle-specific chemical probes have allowed qualitative evaluation of microenvironmental variations, the simultaneous quantification of mitochondrial local microviscosity (ηm ) and micropolarity (ϵm ), along with concurrent structural variations, has remained an unmet need. Herein, we describe a new multifunctional mitochondrial probe (MMP) for simultaneous monitoring of ηm and ϵm by fluorescence lifetime and emission intensity recordings, respectively. The MMP enables highly precise measurements of ηm and ϵm in the presence of a variety of agents perturbing cellular function, and the observed changes can also be correlated with alterations in mitochondrial network morphology and motility. This strategy represents a promising tool for the analysis of subtle changes in organellar structure.
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Affiliation(s)
- Arturo Jiménez-Sánchez
- Department of Biochemistry, Faculty of Medicine, University of Toronto, Toronto, Ontario, M5S 1A8, Canada
| | - Eric K Lei
- Department of Biochemistry, Faculty of Medicine, University of Toronto, Toronto, Ontario, M5S 1A8, Canada
| | - Shana O Kelley
- Department of Biochemistry, Faculty of Medicine, University of Toronto, Toronto, Ontario, M5S 1A8, Canada.,Department of Pharmaceutical Sciences, Leslie Dan Faculty of Pharmacy, Institute for Biomedical and Biomaterials Engineering, Departments of Biochemistry and Chemistry, University of Toronto, Toronto, Ontario, M5S 1A8, Canada
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31
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Oliveira BL, Guo Z, Bernardes GJL. Inverse electron demand Diels-Alder reactions in chemical biology. Chem Soc Rev 2018; 46:4895-4950. [PMID: 28660957 DOI: 10.1039/c7cs00184c] [Citation(s) in RCA: 634] [Impact Index Per Article: 105.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
The emerging inverse electron demand Diels-Alder (IEDDA) reaction stands out from other bioorthogonal reactions by virtue of its unmatchable kinetics, excellent orthogonality and biocompatibility. With the recent discovery of novel dienophiles and optimal tetrazine coupling partners, attention has now been turned to the use of IEDDA approaches in basic biology, imaging and therapeutics. Here we review this bioorthogonal reaction and its promising applications for live cell and animal studies. We first discuss the key factors that contribute to the fast IEDDA kinetics and describe the most recent advances in the synthesis of tetrazine and dienophile coupling partners. Both coupling partners have been incorporated into proteins for tracking and imaging by use of fluorogenic tetrazines that become strongly fluorescent upon reaction. Selected notable examples of such applications are presented. The exceptional fast kinetics of this catalyst-free reaction, even using low concentrations of coupling partners, make it amenable for in vivo radiolabelling using pretargeting methodologies, which are also discussed. Finally, IEDDA reactions have recently found use in bioorthogonal decaging to activate proteins or drugs in gain-of-function strategies. We conclude by showing applications of the IEDDA reaction in the construction of biomaterials that are used for drug delivery and multimodal imaging, among others. The use and utility of the IEDDA reaction is interdisciplinary and promises to revolutionize chemical biology, radiochemistry and materials science.
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Affiliation(s)
- B L Oliveira
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK.
| | - Z Guo
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK.
| | - G J L Bernardes
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK. and Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Avenida Professor Egas Moniz, Lisboa, 1649-028, Portugal.
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32
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Wu D, O'Shea DF. Fluorogenic NIR-probes based on 1,2,4,5-tetrazine substituted BF 2-azadipyrromethenes. Chem Commun (Camb) 2018; 53:10804-10807. [PMID: 28920988 DOI: 10.1039/c7cc06545k] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
A series of 1,2,4,5-tetrazine integrated near infrared (NIR) fluorophores based on the BF2 azadipyrromethene (NIR-AZA) class has been synthesised and their ability to modulate emission from low to high in response to Diels-Alder cycloaditions has been assessed. Substituents on the tetrazine component of the probe (Cl, OMe, p-NO2C6H4O) were seen to strongly influence quantum yields, fluorescence enhancement factors, and rates of cycloadditions. Cycloadditions between tetrazine-NIR-AZA constructs and a strained alkyne substrate were seen to be highly efficient in organic or aqueous solutions and in gels with high fluorescence enhancements of up to 48-fold observed. Real-time demonstration of the cycloaddition mediated fluorogenic property was achieved by imaging the "turn-on" reaction within a continous flow micro-reactor. Preliminary evidence indicates that excited state quenching involves a photoinduced electron transfer.
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Affiliation(s)
- Dan Wu
- Department of Pharmaceutical and Medicinal Chemistry, Royal College of Surgeons in Ireland, 123 St. Stephen's Green, Dublin 2, Ireland.
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33
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Liu M, Yu X, Li M, Liao N, Bi A, Jiang Y, Liu S, Gong Z, Zeng W. Fluorescent probes for the detection of magnesium ions (Mg2+): from design to application. RSC Adv 2018; 8:12573-12587. [PMID: 35541260 PMCID: PMC9079720 DOI: 10.1039/c8ra00946e] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2018] [Accepted: 03/21/2018] [Indexed: 11/24/2022] Open
Abstract
Magnesium ions (Mg2+) play essential roles in various physiological and pathological processes, its abnormal homeostasis in cells is related to many diseases, such as diabetes, neuromuscular disorders, hypertension and other cardiovascular disorders. Investigation on the regulation of magnesium in cellular processes has attracted considerable interest in the past several decades. Among those reported strategies, fluorescent imaging technology has become a powerful and cost-effective tool for the real-time monitoring of magnesium distribution, uptake and trafficking, due to its superior features of high sensitivity and non-invasiveness, as well as excellent spatial and temporal fidelity. Herein, we critically summarize the progresses in the intracellular magnesium detection with fluorescent imaging probes. Our discussion focuses on the recent contributions concerning fluorescent imaging probes for mapping magnesium in biological processes. All the candidates are organized according to their acceptor structures. The sensing mechanisms of fluorescent probes are also highly taken into account. Challenges, trends and prospects of fluorescent imaging technology in magnesium detection are also set forth. Herein, progress in intracellular magnesium detection with fluorescent probes is critically summarized in this work.![]()
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Affiliation(s)
- Min Liu
- Department of Pharmacy
- Institute of Hospital Pharmacy
- Xiangya Hospital
- Central South University
- Changsha 410008
| | - Xia Yu
- Xiangya School of Pharmaceutical Sciences
- Central South University
- Changsha
- P. R. China
| | - Ming Li
- Changsha Stomatological Hospital
- Changsha 410000
- P. R. China
| | - Naixuan Liao
- Xiangya School of Pharmaceutical Sciences
- Central South University
- Changsha
- P. R. China
| | - Anyao Bi
- Xiangya School of Pharmaceutical Sciences
- Central South University
- Changsha
- P. R. China
| | - Yueping Jiang
- Department of Pharmacy
- Institute of Hospital Pharmacy
- Xiangya Hospital
- Central South University
- Changsha 410008
| | - Shao Liu
- Department of Pharmacy
- Institute of Hospital Pharmacy
- Xiangya Hospital
- Central South University
- Changsha 410008
| | - Zhicheng Gong
- Department of Pharmacy
- Institute of Hospital Pharmacy
- Xiangya Hospital
- Central South University
- Changsha 410008
| | - Wenbin Zeng
- Xiangya School of Pharmaceutical Sciences
- Central South University
- Changsha
- P. R. China
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Mboyi CD, Testa C, Reeb S, Genc S, Cattey H, Fleurat-Lessard P, Roger J, Hierso JC. Building Diversity in ortho-Substituted s-Aryltetrazines By Tuning N-Directed Palladium C–H Halogenation: Unsymmetrical Polyhalogenated and Biphenyl s-Aryltetrazines. ACS Catal 2017. [DOI: 10.1021/acscatal.7b03186] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | | | | | | | | | | | | | - Jean-Cyrille Hierso
- Institut Universitaire de France (IUF), 103 Boulevard Saint Michel, 75005 CEDEX Paris, France
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35
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Matsui Y, Funato Y, Imamura H, Miki H, Mizukami S, Kikuchi K. Visualization of long-term Mg 2+ dynamics in apoptotic cells using a novel targetable fluorescent probe. Chem Sci 2017; 8:8255-8264. [PMID: 29619172 PMCID: PMC5858021 DOI: 10.1039/c7sc03954a] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2017] [Accepted: 10/04/2017] [Indexed: 01/30/2023] Open
Abstract
Long-term Mg2+ imaging during apoptosis using a HaloTag-coupled Mg2+ probe demonstrated a Mg2+ concentration increase caused by dissociation of Mg2+ from ATP.
Mg2+ plays important roles in many physiological processes. However, the underlying molecular mechanisms, especially in the apoptotic pathway, remain unclear due to the diffusion of Mg2+ probes, which hinders long-term imaging in specific organelles. We developed an immobilized Mg2+ probe, MGH, which is covalently conjugated with the HaloTag protein in various organelles. HaloTag-coupled MGH enabled long-term imaging of intracellular local Mg2+ dynamics for 24 h. To exploit this remarkable property, MGH was applied to the investigation of intracellular Mg2+ dynamics during apoptosis. Time-lapse imaging revealed an increase in the Mg2+ concentration after apoptotic cell shrinkage. Combined imaging analyses of intracellular Mg2+ and ATP concentrations strongly suggested that this Mg2+ concentration increase was caused by the dissociation of Mg2+ from ATP, along with a decrease in the intracellular ATP concentration. Thus, this protein-coupled Mg2+ probe could be a new chemical tool to elucidate intracellular Mg2+ dynamics with high spatiotemporal resolution.
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Affiliation(s)
- Yusuke Matsui
- Department of Material and Life Science , Graduate School of Engineering , Osaka University , Suita , Osaka 565-0871 , Japan .
| | - Yosuke Funato
- Department of Cellular Regulation , Research Institute for Microbial Diseases , Osaka University , Suita , Osaka 565-0871 , Japan
| | - Hiromi Imamura
- Graduate School of Biostudies , Kyoto University , Kyoto 606-8501 , Japan
| | - Hiroaki Miki
- Department of Cellular Regulation , Research Institute for Microbial Diseases , Osaka University , Suita , Osaka 565-0871 , Japan
| | - Shin Mizukami
- Institute of Multidisciplinary Research for Advanced Materials , Tohoku University , Sendai , Miyagi 980-8577 , Japan .
| | - Kazuya Kikuchi
- Department of Material and Life Science , Graduate School of Engineering , Osaka University , Suita , Osaka 565-0871 , Japan . .,Immunology Frontier Research Center , Osaka University , Suita , Osaka 565-0871 , Japan
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36
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Png ZM, Zeng H, Ye Q, Xu J. Inverse-Electron-Demand Diels-Alder Reactions: Principles and Applications. Chem Asian J 2017; 12:2142-2159. [DOI: 10.1002/asia.201700442] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2017] [Revised: 05/06/2017] [Indexed: 01/12/2023]
Affiliation(s)
- Zhuang Mao Png
- Institute of Materials Research and Engineering; Agency for Science, Technology and Research (A*STAR); 2 Fusionopolis Way, Innovis, #08-03 Singapore 138634 Singapore
| | - Huining Zeng
- Institute of Materials Research and Engineering; Agency for Science, Technology and Research (A*STAR); 2 Fusionopolis Way, Innovis, #08-03 Singapore 138634 Singapore
| | - Qun Ye
- Institute of Materials Research and Engineering; Agency for Science, Technology and Research (A*STAR); 2 Fusionopolis Way, Innovis, #08-03 Singapore 138634 Singapore
| | - Jianwei Xu
- Institute of Materials Research and Engineering; Agency for Science, Technology and Research (A*STAR); 2 Fusionopolis Way, Innovis, #08-03 Singapore 138634 Singapore
- Department of Chemistry; National University of Singapore; 3 Science Drive 3 Singapore 117543 Singapore
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37
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Zhang G, Jacquemin D, Buccella D. Tuning the Spectroscopic Properties of Ratiometric Fluorescent Metal Indicators: Experimental and Computational Studies on Mag-fura-2 and Analogues. J Phys Chem B 2017; 121:696-705. [DOI: 10.1021/acs.jpcb.6b11045] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Guangqian Zhang
- Department
of Chemistry, New York University, New York, New York 10003, United States
| | - Denis Jacquemin
- Laboratoire
CEISAM, UMR CNRS 6230, Université de Nantes, 2 Rue de la
Houssinière, BP 92208, 44322 Nantes Cedex 3, France
- Institut Universitaire de France, 1 rue Descartes, F-75231 Paris Cedex 05, France
| | - Daniela Buccella
- Department
of Chemistry, New York University, New York, New York 10003, United States
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38
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Matsui Y, Sadhu KK, Mizukami S, Kikuchi K. Highly selective tridentate fluorescent probes for visualizing intracellular Mg2+ dynamics without interference from Ca2+ fluctuation. Chem Commun (Camb) 2017; 53:10644-10647. [DOI: 10.1039/c7cc06141b] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
Novel fluorescent probes based on a tridentate Mg2+-selective chelator enabled the detection of intracellular Mg2+ concentration change without any response to Ca2+.
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Affiliation(s)
- Yusuke Matsui
- Department of Material and Life Science
- Graduate School of Engineering
- Osaka University
- Suita
- Japan
| | - Kalyan K. Sadhu
- Department of Material and Life Science
- Graduate School of Engineering
- Osaka University
- Suita
- Japan
| | - Shin Mizukami
- Institute of Multidisciplinary Research for Advanced Materials
- Tohoku University
- Sendai
- Japan
| | - Kazuya Kikuchi
- Department of Material and Life Science
- Graduate School of Engineering
- Osaka University
- Suita
- Japan
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