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Chansoria P, Rizzo R, Rütsche D, Liu H, Delrot P, Zenobi-Wong M. Light from Afield: Fast, High-Resolution, and Layer-Free Deep Vat 3D Printing. Chem Rev 2024; 124:8787-8822. [PMID: 38967405 PMCID: PMC11273351 DOI: 10.1021/acs.chemrev.4c00134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Revised: 05/23/2024] [Accepted: 05/24/2024] [Indexed: 07/06/2024]
Abstract
Harnessing light for cross-linking of photoresponsive materials has revolutionized the field of 3D printing. A wide variety of techniques leveraging broad-spectrum light shaping have been introduced as a way to achieve fast and high-resolution printing, with applications ranging from simple prototypes to biomimetic engineered tissues for regenerative medicine. Conventional light-based printing techniques use cross-linking of material in a layer-by-layer fashion to produce complex parts. Only recently, new techniques have emerged which deploy multidirection, tomographic, light-sheet or filamented light-based image projections deep into the volume of resin-filled vat for photoinitiation and cross-linking. These Deep Vat printing (DVP) approaches alleviate the need for layer-wise printing and enable unprecedented fabrication speeds (within a few seconds) with high resolution (>10 μm). Here, we elucidate the physics and chemistry of these processes, their commonalities and differences, as well as their emerging applications in biomedical and non-biomedical fields. Importantly, we highlight their limitations, and future scope of research that will improve the scalability and applicability of these DVP techniques in a wide variety of engineering and regenerative medicine applications.
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Affiliation(s)
- Parth Chansoria
- Department
of Health Sciences and Technology, ETH Zürich, Zürich 8093, Switzerland
| | - Riccardo Rizzo
- John
A. Paulson School of Engineering and Applied Sciences, Harvard University, Boston, Massachusetts 02134, United States
- Wyss
Institute for Biologically Inspired Engineering, Harvard University, Boston, Massachusetts 02215, United States
| | - Dominic Rütsche
- Department
of Bioengineering, Stanford University, Stanford, California 94305, United States
- Basic
Science & Engineering (BASE) Initiative, Stanford University School of Medicine, Stanford, California 94305, United States
| | - Hao Liu
- Department
of Health Sciences and Technology, ETH Zürich, Zürich 8093, Switzerland
| | - Paul Delrot
- Readily3D
SA, EPFL Innovation Park, Lausanne 1015, Switzerland
| | - Marcy Zenobi-Wong
- Department
of Health Sciences and Technology, ETH Zürich, Zürich 8093, Switzerland
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2
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Gharios R, Francis RM, DeForest CA. Chemical and Biological Engineering Strategies to Make and Modify Next-Generation Hydrogel Biomaterials. MATTER 2023; 6:4195-4244. [PMID: 38313360 PMCID: PMC10836217 DOI: 10.1016/j.matt.2023.10.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2024]
Abstract
There is a growing interest in the development of technologies to probe and direct in vitro cellular function for fundamental organoid and stem cell biology, functional tissue and metabolic engineering, and biotherapeutic formulation. Recapitulating many critical aspects of the native cellular niche, hydrogel biomaterials have proven to be a defining platform technology in this space, catapulting biological investigation from traditional two-dimensional (2D) culture into the 3D world. Seeking to better emulate the dynamic heterogeneity characteristic of all living tissues, global efforts over the last several years have centered around upgrading hydrogel design from relatively simple and static architectures into stimuli-responsive and spatiotemporally evolvable niches. Towards this end, advances from traditionally disparate fields including bioorthogonal click chemistry, chemoenzymatic synthesis, and DNA nanotechnology have been co-opted and integrated to construct 4D-tunable systems that undergo preprogrammed functional changes in response to user-defined inputs. In this Review, we highlight how advances in synthetic, semisynthetic, and bio-based chemistries have played a critical role in the triggered creation and customization of next-generation hydrogel biomaterials. We also chart how these advances stand to energize the translational pipeline of hydrogels from bench to market and close with an outlook on outstanding opportunities and challenges that lay ahead.
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Affiliation(s)
- Ryan Gharios
- Department of Chemical Engineering, University of Washington, Seattle WA 98105, USA
| | - Ryan M. Francis
- Department of Chemical Engineering, University of Washington, Seattle WA 98105, USA
| | - Cole A. DeForest
- Department of Chemical Engineering, University of Washington, Seattle WA 98105, USA
- Department of Bioengineering, University of Washington, Seattle WA 98105, USA
- Department of Chemistry, University of Washington, Seattle WA 98105, USA
- Institute of Stem Cell & Regenerative Medicine, University of Washington, Seattle WA 98109, USA
- Molecular Engineering & Sciences Institute, University of Washington, Seattle WA 98105, USA
- Institute for Protein Design, University of Washington, Seattle WA 98105, USA
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3
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Adrion DM, Karunaratne WV, Lopez SA. Multiconfigurational photodynamics simulations reveal the mechanism of photodecarbonylations of cyclopropenones in explicit aqueous environments. Chem Sci 2023; 14:13205-13218. [PMID: 38023495 PMCID: PMC10664470 DOI: 10.1039/d3sc03805j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Accepted: 11/02/2023] [Indexed: 12/01/2023] Open
Abstract
Gas-evolving photochemical reactions use light and mild conditions to access strained organic compounds irreversibly. Cyclopropenones are a class of light-responsive molecules used in bioorthogonal photoclick reactions; their excited-state decarbonylation reaction mechanisms are misunderstood due to their ultrafast (<100 femtosecond) lifetimes. We have combined multiconfigurational quantum mechanical (QM) calculations and non-adiabatic molecular dynamics (NAMD) simulations to uncover the excited-state mechanism of cyclopropenone and a photoprotected cyclooctyne-(COT)-precursor in gaseous and explicit aqueous environments. We explore the role of H-bonding with fully quantum mechanical explicitly solvated NAMD simulations for the decarbonylation reaction. The cyclopropenones pass through asynchronous conical intersections and have dynamically concerted photodecarbonylation mechanisms. The COT-precursor has a higher quantum yield of 55% than cyclopropenone (28%) because these trajectories prefer to break a σCC bond to avoid the strained trans-cyclooctene geometries. Our solvated simulations show an increased quantum yield (58%) for the systems studied here.
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Affiliation(s)
- Daniel M Adrion
- Department of Chemistry and Chemical Biology, Northeastern University Boston Massachusetts 02115 USA
| | - Waruni V Karunaratne
- Department of Chemistry and Chemical Biology, Northeastern University Boston Massachusetts 02115 USA
| | - Steven A Lopez
- Department of Chemistry and Chemical Biology, Northeastern University Boston Massachusetts 02115 USA
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4
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Aly AA, Hassan AA, Mostafa SM, Mohamed AH, Osman EM, Nayl AA. Heterocycles from cyclopropenones. RSC Adv 2022; 12:18615-18645. [PMID: 35873324 PMCID: PMC9229296 DOI: 10.1039/d2ra03011j] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Accepted: 06/02/2022] [Indexed: 11/21/2022] Open
Abstract
Great attention has been paid to cyclopropenones as they are present in many natural sources. Various synthesized cyclopropenone derivatives also show a wide range of biological activities. The cyclopropenone derivatives undergo a variety of reactions such as ring-opening reactions, isomerization reactions, C-C coupling reactions, C-H activation, cycloaddition reactions, thermal and photo-irradiation reactions, and acid-base-catalyzed reactions under the influence of various chemical reagents (electrophiles, nucleophiles, radicals, and organometallics) and external forces (heat and light). Many previous reviews have dealt with the chemistry and reactions of cyclopropenones. However and to the best of our knowledge, the utility of cyclopropenones in the synthesis of heterocycles has not been reported before. Therefore, it would be interesting to shed light on this new topic. The present review article provides, for the first time, a comprehensive compilation of synthetic methods for the synthesis of various heterocyclic ring systems, as a significant family in the field of organic chemistry.
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Affiliation(s)
- Ashraf A Aly
- Chemistry Department, Faculty of Science, Minia University El-Minia 61519 Egypt
| | - Alaa A Hassan
- Chemistry Department, Faculty of Science, Minia University El-Minia 61519 Egypt
| | - Sara M Mostafa
- Chemistry Department, Faculty of Science, Minia University El-Minia 61519 Egypt
| | - Asmaa H Mohamed
- Chemistry Department, Faculty of Science, Minia University El-Minia 61519 Egypt
| | - Esraa M Osman
- Chemistry Department, Faculty of Science, Minia University El-Minia 61519 Egypt
| | - AbdElAziz A Nayl
- Department of Chemistry, College of Science, Jouf University P. O. Box 2014 Sakaka Aljouf Saudi Arabia
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5
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Photoaffinity labeling and bioorthogonal ligation: Two critical tools for designing "Fish Hooks" to scout for target proteins. Bioorg Med Chem 2022; 62:116721. [PMID: 35358862 DOI: 10.1016/j.bmc.2022.116721] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Revised: 03/14/2022] [Accepted: 03/17/2022] [Indexed: 11/21/2022]
Abstract
Small molecules remain an important category of therapeutic agents. Their binding to different proteins can lead to both desired and undesired biological effects. Identification of the proteins that a drug binds to has become an important step in drug development because it can lead to safer and more effective drugs. Parent bioactive molecules can be converted to appropriate probes that allow for visualization and identification of their target proteins. Typically, these probes are designed and synthesized utilizing some or all of five major tools; a photoactivatable group, a reporter tag, a linker, an affinity tag, and a bioorthogonal handle. This review covers two of the most challenging tools, photoactivation and bioorthogonal ligation. We provide a historical and theoretical background along with synthetic routes to prepare them. In addition, the review provides comparative analyses of the available tools that can assist decision making when designing such probes. A survey of most recent literature reports is included as well to identify recent trends in the field.
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Lehr M, Neumann T, Näther C, McConnell AJ. M-CPOnes: transition metal complexes with cyclopropenone-based ligands for light-triggered carbon monoxide release. Dalton Trans 2022; 51:6936-6943. [PMID: 35448899 DOI: 10.1039/d2dt00835a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new class of CO-releasing molecules, M-CPOnes, was prepared combining cyclopropenone-based ligands for CO release with the modular scaffold of transition metal complexes. In proof-of-concept studies, M-CPOnes based on ZnII, FeII and CoII are stable in the dark but undergo light-triggered CO release with the cyclopropenone substituents and metal ions enabling tuning of the photophysical properties. Furthermore, the choice of metal allows the use of different spectroscopic methods to monitor photodecarbonylation from fluorescence spectroscopy to UV/vis spectroscopy and paramagnetic NMR spectroscopy. The modularity of M-CPOnes from the metal ion to the cyclopropenone substitution and potential for further functionalisation of the ligand make M-CPOnes appealing for tailored functionality in applications.
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Affiliation(s)
- Marc Lehr
- Otto Diels Institute of Organic Chemistry, Christian-Albrechts-Universität zu Kiel, Otto-Hahn-Platz 4, Kiel 24098, Germany.
| | - Tjorge Neumann
- Otto Diels Institute of Organic Chemistry, Christian-Albrechts-Universität zu Kiel, Otto-Hahn-Platz 4, Kiel 24098, Germany.
| | - Christian Näther
- Institute of Inorganic Chemistry, Christian-Albrechts-Universität zu Kiel, Max-Eyth-Straße 2, Kiel 24118, Germany
| | - Anna J McConnell
- Otto Diels Institute of Organic Chemistry, Christian-Albrechts-Universität zu Kiel, Otto-Hahn-Platz 4, Kiel 24098, Germany.
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7
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Shenje L, Qu Y, Popik V, Ullrich S. Femtosecond photodecarbonylation of photo-ODIBO studied by stimulated Raman spectroscopy and density functional theory. Phys Chem Chem Phys 2021; 23:25637-25648. [PMID: 34783336 DOI: 10.1039/d1cp03512f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Photo-oxa-dibenzocyclooctyne (Photo-ODIBO) undergoes photodecarbonylation under UV excitation to its bright S2 state, forming a highly reactive cyclooctyne, ODIBO. Following 321 nm excitation with sub-50 fs actinic pulses, the excited state evolution and cyclopropenone bond cleavage with CO release were characterized using femtosecond stimulated Raman spectroscopy and time-dependent density functional theory Raman calculations. Analysis of the photo-ODIBO S2 CO Raman band revealed multi-exponential intensity, peak splitting and frequency-shift dynamics. This suggests a stepwise cleavage of the two C-C bonds in the cyclopropenone structure that is completed within <300 fs after excitation. Evidence of intramolecular vibrational relaxation on the S2 state, concurrent with photodecarbonylation, with dynamics matching previous electronic transient absorption spectroscopy, was also observed. This confirms an excited state, as opposed to ground state, photodecarbonylation mechanism resulting in a vibronically excited photoproduct, ODIBO.
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Affiliation(s)
- Learnmore Shenje
- Department of Physics and Astronomy, University of Georgia, Athens, Georgia 30602, USA.
| | - Yingqi Qu
- Department of Physics and Astronomy, University of Georgia, Athens, Georgia 30602, USA.
| | - Vladimir Popik
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Susanne Ullrich
- Department of Physics and Astronomy, University of Georgia, Athens, Georgia 30602, USA.
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8
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Zhu C, Kou T, Kadi AA, Li J, Zhang Y. Molecular platforms based on biocompatible photoreactions for photomodulation of biological targets. Org Biomol Chem 2021; 19:9358-9368. [PMID: 34632469 DOI: 10.1039/d1ob01613j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Photoirradiation provides a convenient and biocompatible approach for spatiotemporal modulation of biological systems with photoresponsive components. The construction of molecular platforms with a photoresponse to be integrated into biomolecules for photomodulation has been of great research interest in optochemical biology. In this review, we summarize typical molecular platforms that are integratable with biomolecules for photomodulation purposes. We categorize these molecular platforms according to their excitation light source, namely ultraviolet (UV), visible (Vis) or near-infrared (NIR) light. The protype chemistry of these molecular platforms is introduced along with an overview of their most recent applications for spatiotemporal regulation of biomolecular function in living cells or mice models. Challenges and the outlook are also presented. We hope this review paper will contribute to further progress in the development of molecular platforms and their biomedical use.
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Affiliation(s)
- Chenghong Zhu
- State Key Laboratory of Analytical Chemistry for Life Sciences, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing 210023, China.
| | - Tianzhang Kou
- State Key Laboratory of Analytical Chemistry for Life Sciences, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing 210023, China.
| | - Adnan A Kadi
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P. O. Box 2457, Riyadh 11451, Kingdom of Saudi Arabia.
| | - Jinbo Li
- State Key Laboratory of Analytical Chemistry for Life Sciences, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing 210023, China.
| | - Yan Zhang
- State Key Laboratory of Analytical Chemistry for Life Sciences, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing 210023, China.
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9
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Wang C, Zhang H, Zhang T, Zou X, Wang H, Rosenberger J, Vannam R, Trout WS, Grimm JB, Lavis LD, Thorpe C, Jia X, Li Z, Fox JM. Enabling In Vivo Photocatalytic Activation of Rapid Bioorthogonal Chemistry by Repurposing Silicon-Rhodamine Fluorophores as Cytocompatible Far-Red Photocatalysts. J Am Chem Soc 2021; 143:10793-10803. [PMID: 34250803 PMCID: PMC8765119 DOI: 10.1021/jacs.1c05547] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Chromophores that absorb in the tissue-penetrant far-red/near-infrared window have long served as photocatalysts to generate singlet oxygen for photodynamic therapy. However, the cytotoxicity and side reactions associated with singlet oxygen sensitization have posed a problem for using long-wavelength photocatalysis to initiate other types of chemical reactions in biological environments. Herein, silicon-Rhodamine compounds (SiRs) are described as photocatalysts for inducing rapid bioorthogonal chemistry using 660 nm light through the oxidation of a dihydrotetrazine to a tetrazine in the presence of trans-cyclooctene dienophiles. SiRs have been commonly used as fluorophores for bioimaging but have not been applied to catalyze chemical reactions. A series of SiR derivatives were evaluated, and the Janelia Fluor-SiR dyes were found to be especially effective in catalyzing photooxidation (typically 3%). A dihydrotetrazine/tetrazine pair is described that displays high stability in both oxidation states. A protein that was site-selectively modified by trans-cyclooctene was quantitatively conjugated upon exposure to 660 nm light and a dihydrotetrazine. By contrast, a previously described methylene blue catalyst was found to rapidly degrade the protein. SiR-red light photocatalysis was used to cross-link hyaluronic acid derivatives functionalized by dihydrotetrazine and trans-cyclooctenes, enabling 3D culture of human prostate cancer cells. Photoinducible hydrogel formation could also be carried out in live mice through subcutaneous injection of a Cy7-labeled hydrogel precursor solution, followed by brief irradiation to produce a stable hydrogel. This cytocompatible method for using red light photocatalysis to activate bioorthogonal chemistry is anticipated to find broad applications where spatiotemporal control is needed in biological environments.
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Affiliation(s)
- Chuanqi Wang
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA
| | - He Zhang
- Department of Materials Science and Engineering, University of Delaware, Newark, Delaware 19716, USA
| | - Tao Zhang
- Department of Radiology and Biomedical Research Imaging Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA
| | - Xiaoyu Zou
- Department of Materials Science and Engineering, University of Delaware, Newark, Delaware 19716, USA
| | - Hui Wang
- Department of Radiology and Biomedical Research Imaging Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA
| | - Julia Rosenberger
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA
| | - Raghu Vannam
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA
| | - William S. Trout
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA
| | - Jonathan B. Grimm
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn Virginia, 20147, USA
| | - Luke D. Lavis
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn Virginia, 20147, USA
| | - Colin Thorpe
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA
| | - Xinqiao Jia
- Department of Materials Science and Engineering, University of Delaware, Newark, Delaware 19716, USA
- Delaware Biotechnology Institute, Newark, Delaware 19711, USA
| | - Zibo Li
- Department of Radiology and Biomedical Research Imaging Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA
| | - Joseph M. Fox
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA
- Department of Materials Science and Engineering, University of Delaware, Newark, Delaware 19716, USA
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Abstract
The merging of click chemistry with discrete photochemical processes has led to the creation of a new class of click reactions, collectively known as photoclick chemistry. These light-triggered click reactions allow the synthesis of diverse organic structures in a rapid and precise manner under mild conditions. Because light offers unparalleled spatiotemporal control over the generation of the reactive intermediates, photoclick chemistry has become an indispensable tool for a wide range of spatially addressable applications including surface functionalization, polymer conjugation and cross-linking, and biomolecular labeling in the native cellular environment. Over the past decade, a growing number of photoclick reactions have been developed, especially those based on the 1,3-dipolar cycloadditions and Diels-Alder reactions owing to their excellent reaction kinetics, selectivity, and biocompatibility. This review summarizes the recent advances in the development of photoclick reactions and their applications in chemical biology and materials science. A particular emphasis is placed on the historical contexts and mechanistic insights into each of the selected reactions. The in-depth discussion presented here should stimulate further development of the field, including the design of new photoactivation modalities, the continuous expansion of λ-orthogonal tandem photoclick chemistry, and the innovative use of these unique tools in bioconjugation and nanomaterial synthesis.
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Affiliation(s)
- Gangam Srikanth Kumar
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260-3000, United States
| | - Qing Lin
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260-3000, United States
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Porte K, Riomet M, Figliola C, Audisio D, Taran F. Click and Bio-Orthogonal Reactions with Mesoionic Compounds. Chem Rev 2021; 121:6718-6743. [PMID: 33238101 DOI: 10.1021/acs.chemrev.0c00806] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Click and bio-orthogonal reactions are dominated by cycloaddition reactions in general and 1,3-dipolar cycloadditions in particular. Among the dipoles routinely used for click chemistry, azides, nitrones, isonitriles, and nitrile oxides are the most popular. This review is focused on the emerging click chemistry that uses mesoionic compounds as dipole partners. Mesoionics are a very old family of molecules, but their use as reactants for click and bio-orthogonal chemistry is quite recent. The facility to derivatize these dipoles and to tune their reactivity toward cycloaddition reactions makes mesoionics an attractive opportunity for future click chemistry development. In addition, some compounds from this family are able to undergo click-and-release reactions, finding interesting applications in cells, as well as in animals. This review covers the synthetic access to main mesoionics, their reaction with dipolarophiles, and recent applications in chemical biology and heterocycle synthesis.
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Affiliation(s)
- Karine Porte
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
| | - Margaux Riomet
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
| | - Carlotta Figliola
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
| | - Davide Audisio
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
| | - Frédéric Taran
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM, 91191 Gif-sur-Yvette, France
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12
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Heiss TK, Dorn RS, Prescher JA. Bioorthogonal Reactions of Triarylphosphines and Related Analogues. Chem Rev 2021; 121:6802-6849. [PMID: 34101453 PMCID: PMC10064493 DOI: 10.1021/acs.chemrev.1c00014] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Bioorthogonal phosphines were introduced in the context of the Staudinger ligation over 20 years ago. Since that time, phosphine probes have been used in myriad applications to tag azide-functionalized biomolecules. The Staudinger ligation also paved the way for the development of other phosphorus-based chemistries, many of which are widely employed in biological experiments. Several reviews have highlighted early achievements in the design and application of bioorthogonal phosphines. This review summarizes more recent advances in the field. We discuss innovations in classic Staudinger-like transformations that have enabled new biological pursuits. We also highlight relative newcomers to the bioorthogonal stage, including the cyclopropenone-phosphine ligation and the phospha-Michael reaction. The review concludes with chemoselective reactions involving phosphite and phosphonite ligations. For each transformation, we describe the overall mechanism and scope. We also showcase efforts to fine-tune the reagents for specific functions. We further describe recent applications of the chemistries in biological settings. Collectively, these examples underscore the versatility and breadth of bioorthogonal phosphine reagents.
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13
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Shenje L, Thompson W, Ren Z, Lin N, Popik V, Ullrich S. Ultrafast transient absorption spectroscopy of the photodecarbonylation of photo-oxadibenzocyclooctyne (photo-ODIBO). J Chem Phys 2021; 154:074302. [PMID: 33607886 DOI: 10.1063/5.0041161] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Abstract
The ultrafast dynamics of photo-OxaDiBenzocycloOctyne (photo-ODIBO) photo-dissociation was studied using femtosecond transient absorption spectroscopy. Steady-state UV-Vis, time-dependent density functional theory, and 350 nm and 321 nm transient absorption studies are reported. Photo-ODIBO excitation with 321 nm and 350 nm light-induced photodecarbonylation of the cyclopropenone functional group results in the formation of ODIBO. The presence of the photoproduct was confirmed by the results of steady-state photolysis experiments and the observation of absorption signatures of ODIBO in the photo-ODIBO transient absorption spectra. Analysis of the latter revealed the underlying photochemical mechanisms and associated time constants, following excitation of the samples. The dynamics show a multi-exponential decay process, following the dissociation of photo-ODIBO into an excited state of the photoproduct ODIBO within <294 fs after 321 nm excitation. 350 nm excitation, on the other hand, is shown to produce ground state ODIBO via an intermediate species. Additional transient absorption measurements were performed directly on the photoproduct ODIBO to help distinguish spectral signatures associated with these processes.
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Affiliation(s)
- Learnmore Shenje
- Department of Physics and Astronomy, University of Georgia, Athens, Georgia 30605, USA
| | - William Thompson
- Department of Physics and Astronomy, University of Georgia, Athens, Georgia 30605, USA
| | - Zichun Ren
- Department of Chemistry, University of Georgia, Athens, Georgia 30605, USA
| | - Nannan Lin
- Department of Chemistry, University of Georgia, Athens, Georgia 30605, USA
| | - Vladimir Popik
- Department of Chemistry, University of Georgia, Athens, Georgia 30605, USA
| | - Susanne Ullrich
- Department of Physics and Astronomy, University of Georgia, Athens, Georgia 30605, USA
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14
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Wang ZX, Hu L, Gao YF, Kong FY, Li HY, Zhu J, Fang HL, Wang W. Aggregation-Induced Emission Behavior of Dual-NIR-Emissive Zinc-Doped Carbon Nanosheets for Ratiometric Anthrax Biomarker Detection. ACS APPLIED BIO MATERIALS 2020; 3:9031-9042. [DOI: 10.1021/acsabm.0c01260] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Zhong-Xia Wang
- School of Chemistry and Chemical Engineering, Yancheng Institute of Technology, Yancheng 224051, P.R. China
| | - Lei Hu
- School of Chemistry and Chemical Engineering, Yancheng Institute of Technology, Yancheng 224051, P.R. China
| | - Yuan-Fei Gao
- School of Chemistry and Chemical Engineering, Yancheng Institute of Technology, Yancheng 224051, P.R. China
| | - Fen-Ying Kong
- School of Chemistry and Chemical Engineering, Yancheng Institute of Technology, Yancheng 224051, P.R. China
| | - Heng-Ye Li
- School of Chemistry and Chemical Engineering, Yancheng Institute of Technology, Yancheng 224051, P.R. China
| | - Jing Zhu
- School of Chemistry and Chemical Engineering, Yancheng Institute of Technology, Yancheng 224051, P.R. China
| | - Hai-Lin Fang
- School of Chemistry and Chemical Engineering, Yancheng Institute of Technology, Yancheng 224051, P.R. China
| | - Wei Wang
- School of Chemistry and Chemical Engineering, Yancheng Institute of Technology, Yancheng 224051, P.R. China
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15
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Escorihuela J, Looijen WJE, Wang X, Aquino AJA, Lischka H, Zuilhof H. Cycloaddition of Strained Cyclic Alkenes and Ortho-Quinones: A Distortion/Interaction Analysis. J Org Chem 2020; 85:13557-13566. [PMID: 33105075 PMCID: PMC7656516 DOI: 10.1021/acs.joc.0c01674] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
![]()
The
chemistry of strained unsaturated cyclic compounds has experienced
remarkable growth in recent years via the development of metal–free
click reactions. Among these reactions, the cycloaddition of cyclopropenes
and their analogues to ortho-quinones has been established
as a highly promising click reaction. The present work investigates
the mechanism involved in the cycloaddition of strained dienes to ortho-quinones and structural factors that would influence
this reaction. For this purpose, we use B97D density functional theory
calculations throughout, and for relevant cases, we use spin component–scaled
MP2 calculations and single–point domain-based local pair natural
orbital coupled cluster (DLPNO-CCSD(T)) calculations. The outcomes
are analyzed in detail using the distortion/interaction model, and
suggestions for future experimental work are made.
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Affiliation(s)
- Jorge Escorihuela
- Departament de Quı́mica Orgànica, Universitat de València, Av. Vicent Andrés Estellés s/n, 46100 Burjassot, Valencia, Spain
| | - Wilhelmus J E Looijen
- Laboratory of Organic Chemistry, Wageningen University, Stippeneng 4, 6708 WE Wageningen, The Netherlands
| | - Xiao Wang
- School of Pharmaceutical Sciences and Technology, Tianjin University, Tianjin 300072, China
| | - Adelia J A Aquino
- School of Pharmaceutical Sciences and Technology, Tianjin University, Tianjin 300072, China.,Institute for Soil Research, University of Natural Resources and Life Sciences, Peter-Jordan-Strasse 82, A-1190 Vienna, Austria.,Department of Mechanical Engineering, Texas Tech University, Lubbock, Texas 79409, United States
| | - Hans Lischka
- School of Pharmaceutical Sciences and Technology, Tianjin University, Tianjin 300072, China.,Institute for Theoretical Chemistry, University of Vienna, Waehringerstrasse 17, A-1090 Vienna, Austria.,Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409-1061, United States
| | - Han Zuilhof
- Laboratory of Organic Chemistry, Wageningen University, Stippeneng 4, 6708 WE Wageningen, The Netherlands.,School of Pharmaceutical Sciences and Technology, Tianjin University, Tianjin 300072, China.,Department of Chemical and Materials Engineering, Faculty of Engineering, King Abdulaziz University, 21589 Jeddah, Saudi Arabia
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16
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Song H, Wu D, Mazunin D, Liu SM, Sato Y, Broguiere N, Zenobi‐Wong M, Bode JW. Post‐Assembly Photomasking of Potassium Acyltrifluoroborates (KATs) for Two‐Photon 3D Patterning of PEG‐Hydrogels. Helv Chim Acta 2020. [DOI: 10.1002/hlca.202000172] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Haewon Song
- Laboratorium für Organische Chemie Department of Chemistry and Applied Biosciences, ETH Zürich CH-8093 Zürich Switzerland
| | - Dino Wu
- Laboratorium für Organische Chemie Department of Chemistry and Applied Biosciences, ETH Zürich CH-8093 Zürich Switzerland
| | - Dimitry Mazunin
- Laboratorium für Organische Chemie Department of Chemistry and Applied Biosciences, ETH Zürich CH-8093 Zürich Switzerland
| | - Sizhou M. Liu
- Laboratorium für Organische Chemie Department of Chemistry and Applied Biosciences, ETH Zürich CH-8093 Zürich Switzerland
| | - Yoshikatsu Sato
- Institute of Transformative Bio-Molecules Nagoya University Nagoya Aichi 464-8601 Japan
| | - Nicolas Broguiere
- Tissue Engineering and Biofabrication Laboratory Department of Health Sciences & Technology, ETH Zürich CH-8093 Zürich Switzerland
| | - Marcy Zenobi‐Wong
- Tissue Engineering and Biofabrication Laboratory Department of Health Sciences & Technology, ETH Zürich CH-8093 Zürich Switzerland
| | - Jeffrey W. Bode
- Laboratorium für Organische Chemie Department of Chemistry and Applied Biosciences, ETH Zürich CH-8093 Zürich Switzerland
- Institute of Transformative Bio-Molecules Nagoya University Nagoya Aichi 464-8601 Japan
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17
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Cui L, Vivona S, Smith BR, Kothapalli SR, Liu J, Ma X, Chen Z, Taylor M, Kierstead PH, Fréchet JM, Gambhir SS, Rao J. Reduction Triggered In Situ Polymerization in Living Mice. J Am Chem Soc 2020; 142:15575-15584. [PMID: 32804495 PMCID: PMC8171073 DOI: 10.1021/jacs.0c07594] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
"Smart" biomaterials that are responsive to physiological or biochemical stimuli have found many biomedical applications for tissue engineering, therapeutics, and molecular imaging. In this work, we describe in situ polymerization of activatable biorthogonal small molecules in response to a reducing environment change in vivo. We designed a carbohydrate linker- and cyanobenzothiazole-cysteine condensation reaction-based small molecule scaffold that can undergo rapid condensation reaction upon physiochemical changes (such as a reducing environment) to form polymers (pseudopolysaccharide). The fluorescent and photoacoustic properties of a fluorophore-tagged condensation scaffold before and after the transformation have been examined with a dual-modality optical imaging method. These results confirmed the in situ polymerization of this probe after both local and systemic administration in living mice.
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Affiliation(s)
- Lina Cui
- Department of Medicinal Chemistry, University of Florida, Gainesville, FL, USA
- UF Health Cancer Center, University of Florida, Gainesville, FL, USA
- Molecular Imaging Program at Stanford, Bio-X Program, Department of Radiology, School of medicine, Stanford University, Stanford, CA, USA
- Department of Chemistry, Stanford University, CA, USA
| | - Sandro Vivona
- Department of Molecular and Cellular Physiology, Stanford University, CA, USA
- Department of Structural Biology, Stanford University, Stanford, CA, USA
- Department of Photon Science, Stanford University, Stanford, CA, USA
| | - Bryan Ronain Smith
- Molecular Imaging Program at Stanford, Bio-X Program, Department of Radiology, School of medicine, Stanford University, Stanford, CA, USA
| | - Sri R. Kothapalli
- Molecular Imaging Program at Stanford, Bio-X Program, Department of Radiology, School of medicine, Stanford University, Stanford, CA, USA
| | - Jun Liu
- Department of Medicinal Chemistry, University of Florida, Gainesville, FL, USA
- UF Health Cancer Center, University of Florida, Gainesville, FL, USA
| | - Xiaowei Ma
- Department of Medicinal Chemistry, University of Florida, Gainesville, FL, USA
- UF Health Cancer Center, University of Florida, Gainesville, FL, USA
| | - Zixin Chen
- Department of Medicinal Chemistry, University of Florida, Gainesville, FL, USA
- UF Health Cancer Center, University of Florida, Gainesville, FL, USA
- Department of Chemistry, Stanford University, CA, USA
| | - Madelynn Taylor
- Molecular Imaging Program at Stanford, Bio-X Program, Department of Radiology, School of medicine, Stanford University, Stanford, CA, USA
| | | | | | - Sanjiv S. Gambhir
- Molecular Imaging Program at Stanford, Bio-X Program, Department of Radiology, School of medicine, Stanford University, Stanford, CA, USA
- Department of Bioengineering, Stanford University, CA, USA
- Department of Materials Science and Engineering, Stanford University, Stanford, CA, USA
| | - Jianghong Rao
- Molecular Imaging Program at Stanford, Bio-X Program, Department of Radiology, School of medicine, Stanford University, Stanford, CA, USA
- Department of Chemistry, Stanford University, CA, USA
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18
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Jiang T, Laughlin ST. Enzyme- or light-triggered cyclopropenes for bioorthogonal ligation. Methods Enzymol 2020; 641:1-34. [PMID: 32713519 DOI: 10.1016/bs.mie.2020.04.034] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Abstract
Since first reported at the beginning of the 21st century, bioorthogonal reactions have become powerful tools for investigating biological systems. Here, we review several classic and current bioorthogonal reactions, including the Staudinger-Bertozzi ligation, strain-promoted azide-alkyne cycloaddition (SPAAC), 1,3-dipolar cycloaddition, and tetrazine-alkene ligation. We discuss the capabilities and limitations of the subset of current bioorthogonal reactions that can be "turned on" by exposure to light or an enzyme. Finally, we focus on our recently developed turn-on cyclopropenes, which can be activated for reaction with tetrazines by exposure to light or enzymes, like nitroreductase, depending on the modular reaction caging group appended to the cyclopropene. We discuss the caged cyclopropene's molecular design and synthesis, and we discuss experiments to evaluate and verify reactivity both in vitro and in vivo.
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Affiliation(s)
- Ting Jiang
- Department of Chemistry, Stony Brook University, Stony Brook, NY, United States
| | - Scott T Laughlin
- Department of Chemistry, Stony Brook University, Stony Brook, NY, United States; Institute of Chemical Biology and Drug Discovery, Stony Brook University, Stony Brook, NY, United States.
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19
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Lee M, Rizzo R, Surman F, Zenobi-Wong M. Guiding Lights: Tissue Bioprinting Using Photoactivated Materials. Chem Rev 2020; 120:10950-11027. [DOI: 10.1021/acs.chemrev.0c00077] [Citation(s) in RCA: 63] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Mihyun Lee
- Tissue Engineering + Biofabrication HPL J22, ETH Zürich, Otto-Stern-Weg 7, 8093 Zürich, Switzerland
| | - Riccardo Rizzo
- Tissue Engineering + Biofabrication HPL J22, ETH Zürich, Otto-Stern-Weg 7, 8093 Zürich, Switzerland
| | - František Surman
- Tissue Engineering + Biofabrication HPL J22, ETH Zürich, Otto-Stern-Weg 7, 8093 Zürich, Switzerland
| | - Marcy Zenobi-Wong
- Tissue Engineering + Biofabrication HPL J22, ETH Zürich, Otto-Stern-Weg 7, 8093 Zürich, Switzerland
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20
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Boase NRB. Shining a Light on Bioorthogonal Photochemistry for Polymer Science. Macromol Rapid Commun 2020; 41:e2000305. [DOI: 10.1002/marc.202000305] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Revised: 06/29/2020] [Indexed: 01/05/2023]
Affiliation(s)
- Nathan R. B. Boase
- Centre for Materials Science Queensland University of Technology 2 George Street Brisbane QLD 4000 Australia
- School of Chemistry and Physics Queensland University of Technology 2 George Street Brisbane QLD 4000 Australia
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21
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Truong VX. Break Up to Make Up: Utilization of Photocleavable Groups in Biolabeling of Hydrogel Scaffolds. CHEMPHOTOCHEM 2020. [DOI: 10.1002/cptc.202000072] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Vinh X. Truong
- School of Chemistry and PhysicsQueensland University of Technology 2 George St. QLD 4000 Brisbane Australia
- Centre for Materials ScienceQueensland University of Technology 2 George Street Brisbane QLD 4000 Australia
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22
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Lu H, Yu TY, Xu PF, Wei H. Selective Decarbonylation via Transition-Metal-Catalyzed Carbon–Carbon Bond Cleavage. Chem Rev 2020; 121:365-411. [DOI: 10.1021/acs.chemrev.0c00153] [Citation(s) in RCA: 106] [Impact Index Per Article: 26.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Hong Lu
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi’an 710069, China
| | - Tian-Yang Yu
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi’an 710069, China
| | - Peng-Fei Xu
- State Key Laboratory of Applied Organic Chemistry, College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, China
| | - Hao Wei
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi’an 710069, China
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23
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Jiang L, Ding H, Xu M, Hu X, Li S, Zhang M, Zhang Q, Wang Q, Lu S, Tian Y, Bi H. UV-Vis-NIR Full-Range Responsive Carbon Dots with Large Multiphoton Absorption Cross Sections and Deep-Red Fluorescence at Nucleoli and In Vivo. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2020; 16:e2000680. [PMID: 32285624 DOI: 10.1002/smll.202000680] [Citation(s) in RCA: 90] [Impact Index Per Article: 22.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Revised: 03/08/2020] [Accepted: 03/10/2020] [Indexed: 05/14/2023]
Abstract
Carbon dots (CDs), with excellent optical property and cytocompatibility, are an ideal class of nanomaterials applied in the field of biomedicine. However, the weak response of CDs in the near-infrared (NIR) region impedes their practical applications. Here, UV-vis-NIR full-range responsive fluorine and nitrogen doped CDs (N-CDs-F) are designed and synthesized that own a favorable donor-π-acceptor (D-π-A) configuration and exhibit excellent two-photon (λex = 1060 nm), three-photon (λex = 1600 nm), and four-photon (λex = 2000 nm) excitation upconversion fluorescence. D-π-A-conjugated CDs prepared by solvothermal synthesis under the assistance of ammonia fluoride are reported and are endowed with larger multiphoton absorption (MPA) cross sections (3PA: 9.55 × 10-80 cm6 s2 photon-2 , 4PA: 6.32 × 10-80 cm8 s3 photon-3 ) than conventional organic compounds. Furthermore, the N-CDs-F show bright deep-red to NIR fluorescence both in vitro and in vivo, and can even stain the nucleoli of tumor cells. A plausible mechanism is proposed on the basis of the strong inter-dot and intra-dot hydrogen bonds through NH···F that can facilitate the expanding of conjugated sp2 domains, and thus not only result in lower highest occupied molecular orbital-lowest unoccupied molecular orbital energy level but also larger MPA cross sections than those of undoped CDs.
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Affiliation(s)
- Lei Jiang
- School of Chemistry and Chemical Engineering, Anhui University, 111 Jiulong Road, Hefei, 230601, China
- Anhui Key Laboratory of Modern Biomanufacturing, Anhui University, 111 Jiulong Road, Hefei, 230601, China
| | - Haizhen Ding
- School of Chemistry and Chemical Engineering, Anhui University, 111 Jiulong Road, Hefei, 230601, China
- Anhui Key Laboratory of Modern Biomanufacturing, Anhui University, 111 Jiulong Road, Hefei, 230601, China
| | - Mingsheng Xu
- School of Chemistry and Chemical Engineering, Anhui University, 111 Jiulong Road, Hefei, 230601, China
- Anhui Key Laboratory of Modern Biomanufacturing, Anhui University, 111 Jiulong Road, Hefei, 230601, China
| | - Xiaolong Hu
- School of Chemistry and Chemical Engineering, Anhui University, 111 Jiulong Road, Hefei, 230601, China
- Anhui Key Laboratory of Modern Biomanufacturing, Anhui University, 111 Jiulong Road, Hefei, 230601, China
| | - Shengli Li
- School of Chemistry and Chemical Engineering, Anhui University, 111 Jiulong Road, Hefei, 230601, China
| | - Mingzhu Zhang
- School of Chemistry and Chemical Engineering, Anhui University, 111 Jiulong Road, Hefei, 230601, China
| | - Qiong Zhang
- School of Chemistry and Chemical Engineering, Anhui University, 111 Jiulong Road, Hefei, 230601, China
| | - Qiyang Wang
- School of Chemistry and Chemical Engineering, Anhui University, 111 Jiulong Road, Hefei, 230601, China
| | - Siyu Lu
- College of Chemistry, Zhengzhou University, 100 Kexue Road, Zhengzhou, 450001, China
| | - Yupeng Tian
- School of Chemistry and Chemical Engineering, Anhui University, 111 Jiulong Road, Hefei, 230601, China
| | - Hong Bi
- School of Chemistry and Chemical Engineering, Anhui University, 111 Jiulong Road, Hefei, 230601, China
- Anhui Key Laboratory of Modern Biomanufacturing, Anhui University, 111 Jiulong Road, Hefei, 230601, China
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24
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Li J, Kong H, Zhu C, Zhang Y. Photo-controllable bioorthogonal chemistry for spatiotemporal control of bio-targets in living systems. Chem Sci 2020; 11:3390-3396. [PMID: 34109018 PMCID: PMC8152734 DOI: 10.1039/c9sc06540g] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2019] [Accepted: 03/07/2020] [Indexed: 12/27/2022] Open
Abstract
The establishment of bioorthogonal chemistry is one of the most significant advances in chemical biology using exogenous chemistry to perturb and study biological processes. Photo-modulation of biological systems has realized temporal and spatial control on biomacromolecules in living systems. The combination of photo-modulation and bioorthogonal chemistry is therefore emerging as a new direction to develop new chemical biological tools with spatiotemporal resolution. This minireview will focus on recent development of bioorthogonal chemistry subject to spatiotemporal control through photo-irradiation. Different strategies to realize photo-control on bioorthogonal bond-forming reactions and biological applications of photo-controllable bioorthogonal reactions will be summarized to give a perspective on how the innovations on photo-chemistry can contribute to the development of optochemical biology. Future trends to develop more optochemical tools based on novel photochemistry will also be discussed to envision the development of chemistry-oriented optochemical biology.
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Affiliation(s)
- Jinbo Li
- State Key Laboratory of Analytical Chemistry for Life Sciences, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University Nanjing 210023 China
| | - Hao Kong
- State Key Laboratory of Analytical Chemistry for Life Sciences, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University Nanjing 210023 China
| | - Chenghong Zhu
- State Key Laboratory of Analytical Chemistry for Life Sciences, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University Nanjing 210023 China
| | - Yan Zhang
- State Key Laboratory of Analytical Chemistry for Life Sciences, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University Nanjing 210023 China
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25
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Gao J, Xiong Q, Wu X, Deng J, Zhang X, Zhao X, Deng P, Yu Z. Direct ring-strain loading for visible-light accelerated bioorthogonal ligation via diarylsydnone-dibenzo[b,f ][1,4,5]thiadiazepine photo-click reactions. Commun Chem 2020; 3:29. [PMID: 36703431 PMCID: PMC9814081 DOI: 10.1038/s42004-020-0273-6] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2019] [Accepted: 02/07/2020] [Indexed: 01/29/2023] Open
Abstract
Ultra-fast and selective covalent-bond forming reactions with spatiotemporal controllability are foundational for developing a bioorthogonal approach with high manipulability. However, it is challenging to exploit a reporter functional group to achieve these requirements simultaneously. Here, 11H-Dibenzo[c,f][1,2]diazepine and a set of heterocyclic analogues are investigated for both their photo-switching natures and their ability to serve as dipolarophiles in photo-click reactions with diarylsydnone. Sulfur-containing dibenzothiadiazepine (DBTD) is discovered to be an excellent chemical reporter in cycloaddition with visible-light excitation for in-situ ring-strain loading via its (Z) → (E) photo-isomerization. The bioorthogonal utility of the DBTD tag in spatiotemporally controlled ligation for protein modifications on live cells is also demonstrated.
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Affiliation(s)
- Jingshuo Gao
- grid.13291.380000 0001 0807 1581Key Laboratory of Green Chemistry and Technology, Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, 610064 Chengdu, China
| | - Qin Xiong
- grid.13291.380000 0001 0807 1581Key Laboratory of Green Chemistry and Technology, Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, 610064 Chengdu, China
| | - Xueting Wu
- grid.13291.380000 0001 0807 1581Key Laboratory of Green Chemistry and Technology, Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, 610064 Chengdu, China
| | - Jiajie Deng
- grid.13291.380000 0001 0807 1581Key Laboratory of Green Chemistry and Technology, Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, 610064 Chengdu, China
| | - Xiaocui Zhang
- grid.13291.380000 0001 0807 1581Key Laboratory of Green Chemistry and Technology, Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, 610064 Chengdu, China
| | - Xiaohu Zhao
- grid.13291.380000 0001 0807 1581Key Laboratory of Green Chemistry and Technology, Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, 610064 Chengdu, China
| | - Pengchi Deng
- grid.13291.380000 0001 0807 1581Analytical and Testing Center, Sichuan University, 29 Wangjiang Road, 610064 Chengdu, China
| | - Zhipeng Yu
- grid.13291.380000 0001 0807 1581Key Laboratory of Green Chemistry and Technology, Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, 610064 Chengdu, China
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26
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Jiang S, Wu X, Liu H, Deng J, Zhang X, Yao Z, Zheng Y, Li B, Yu Z. Ring‐Strain‐Promoted Ultrafast Diaryltetrazole–Alkyne Photoclick Reactions Triggered by Visible Light. CHEMPHOTOCHEM 2020. [DOI: 10.1002/cptc.201900290] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Shichao Jiang
- Key Laboratory of Green Chemistry and Technology of Ministry of EducationSichuan University 29 Wangjiang Road Chengdu 610064 China
| | - Xueting Wu
- Key Laboratory of Green Chemistry and Technology of Ministry of EducationSichuan University 29 Wangjiang Road Chengdu 610064 China
| | - Hui Liu
- Key Laboratory of Green Chemistry and Technology of Ministry of EducationSichuan University 29 Wangjiang Road Chengdu 610064 China
| | - Jiajie Deng
- Key Laboratory of Green Chemistry and Technology of Ministry of EducationSichuan University 29 Wangjiang Road Chengdu 610064 China
| | - Xiaocui Zhang
- Key Laboratory of Green Chemistry and Technology of Ministry of EducationSichuan University 29 Wangjiang Road Chengdu 610064 China
| | - Zhuojun Yao
- Key Laboratory of Green Chemistry and Technology of Ministry of EducationSichuan University 29 Wangjiang Road Chengdu 610064 China
| | - Yuanqin Zheng
- Key Laboratory of Green Chemistry and Technology of Ministry of EducationSichuan University 29 Wangjiang Road Chengdu 610064 China
| | - Bo Li
- Key Laboratory of Green Chemistry and Technology of Ministry of EducationSichuan University 29 Wangjiang Road Chengdu 610064 China
| | - Zhipeng Yu
- Key Laboratory of Green Chemistry and Technology of Ministry of EducationSichuan University 29 Wangjiang Road Chengdu 610064 China
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27
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Chen Z, Chen M, Cheng Y, Kowada T, Xie J, Zheng X, Rao J. Exploring the Condensation Reaction between Aromatic Nitriles and Amino Thiols To Optimize In Situ Nanoparticle Formation for the Imaging of Proteases and Glycosidases in Cells. Angew Chem Int Ed Engl 2020; 59:3272-3279. [PMID: 31828913 DOI: 10.1002/anie.201913314] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Indexed: 12/31/2022]
Abstract
The condensation reaction between 6-hydroxy-2-cyanobenzothiazole (CBT) and cysteine has been shown for various applications such as site-specific protein labelling and in vivo cancer imaging. This report further expands the substrate scope of this reaction by varying the substituents on aromatic nitriles and amino thiols and testing their reactivity and ability to form nanoparticles for cell imaging. The structure-activity relationship study leads to the identification of the minimum structural requirement for the macrocyclization and assembly process in forming nanoparticles. One of the scaffolds made of 2-pyrimidinecarbonitrile and cysteine joined by a benzyl linker was applied to design fluorescent probes for imaging caspase-3/7 and β-galactosidase activity in live cells. These results demonstrate the generality of this system for imaging hydrolytic enzymes.
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Affiliation(s)
- Zixin Chen
- Departments of Radiology and Chemistry, Molecular Imaging Program at Stanford, Stanford University School of Medicine, Stanford, CA, 94305, USA
| | - Min Chen
- Departments of Radiology and Chemistry, Molecular Imaging Program at Stanford, Stanford University School of Medicine, Stanford, CA, 94305, USA
| | - Yunfeng Cheng
- Departments of Radiology and Chemistry, Molecular Imaging Program at Stanford, Stanford University School of Medicine, Stanford, CA, 94305, USA
| | - Toshiyuki Kowada
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai, Miyagi, 980-8577, Japan
| | - Jinghang Xie
- Departments of Radiology and Chemistry, Molecular Imaging Program at Stanford, Stanford University School of Medicine, Stanford, CA, 94305, USA
| | - Xianchuang Zheng
- Departments of Radiology and Chemistry, Molecular Imaging Program at Stanford, Stanford University School of Medicine, Stanford, CA, 94305, USA
| | - Jianghong Rao
- Departments of Radiology and Chemistry, Molecular Imaging Program at Stanford, Stanford University School of Medicine, Stanford, CA, 94305, USA
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28
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Chen Z, Chen M, Cheng Y, Kowada T, Xie J, Zheng X, Rao J. Exploring the Condensation Reaction between Aromatic Nitriles and Amino Thiols To Optimize In Situ Nanoparticle Formation for the Imaging of Proteases and Glycosidases in Cells. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201913314] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Zixin Chen
- Departments of Radiology and Chemistry Molecular Imaging Program at Stanford Stanford University School of Medicine Stanford CA 94305 USA
| | - Min Chen
- Departments of Radiology and Chemistry Molecular Imaging Program at Stanford Stanford University School of Medicine Stanford CA 94305 USA
| | - Yunfeng Cheng
- Departments of Radiology and Chemistry Molecular Imaging Program at Stanford Stanford University School of Medicine Stanford CA 94305 USA
| | - Toshiyuki Kowada
- Institute of Multidisciplinary Research for Advanced Materials Tohoku University 2-1-1 Katahira, Aoba-ku Sendai Miyagi 980-8577 Japan
| | - Jinghang Xie
- Departments of Radiology and Chemistry Molecular Imaging Program at Stanford Stanford University School of Medicine Stanford CA 94305 USA
| | - Xianchuang Zheng
- Departments of Radiology and Chemistry Molecular Imaging Program at Stanford Stanford University School of Medicine Stanford CA 94305 USA
| | - Jianghong Rao
- Departments of Radiology and Chemistry Molecular Imaging Program at Stanford Stanford University School of Medicine Stanford CA 94305 USA
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29
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Deng J, Wu X, Guo G, Zhao X, Yu Z. Photoisomerization-enhanced 1,3-dipolar cycloaddition of carbon-bridged octocyclic azobenzene with photo-released nitrile imine for peptide stapling and imaging in live cells. Org Biomol Chem 2020; 18:5602-5607. [DOI: 10.1039/d0ob01027h] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
A novel photo-click ligation reaction between nitrile imines and photo-switchable octocyclic azobenzenes was established to both tune the conformation of the NoxaB peptide and conjugate probes with enhanced efficacy in cell apoptosis.
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Affiliation(s)
- Jiajie Deng
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
- China
| | - Xueting Wu
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
- China
| | - Guiling Guo
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
- China
| | - Xiaohu Zhao
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
- China
| | - Zhipeng Yu
- Key Laboratory of Green Chemistry and Technology of Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
- China
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30
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Li Z, Kosuri S, Foster H, Cohen J, Jumeaux C, Stevens MM, Chapman R, Gormley AJ. A Dual Wavelength Polymerization and Bioconjugation Strategy for High Throughput Synthesis of Multivalent Ligands. J Am Chem Soc 2019; 141:19823-19830. [PMID: 31743014 DOI: 10.1021/jacs.9b09899] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Structure-function relationships for multivalent polymer scaffolds are highly complex due to the wide diversity of architectures offered by such macromolecules. Evaluation of this landscape has traditionally been accomplished case-by-case due to the experimental difficulty associated with making these complex conjugates. Here, we introduce a simple dual-wavelength, two-step polymerize and click approach for making combinatorial conjugate libraries. It proceeds by incorporation of a polymerization friendly cyclopropenone-masked dibenzocyclooctyne into the side chain of linear polymers or the α-chain end of star polymers. Polymerizations are performed under visible light using an oxygen tolerant porphyrin-catalyzed photoinduced electron/energy transfer-reversible addition-fragmentation chain-transfer (PET-RAFT) process, after which the deprotection and click reaction is triggered by UV light. Using this approach, we are able to precisely control the valency and position of ligands on a polymer scaffold in a manner conducive to high throughput synthesis.
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Affiliation(s)
- Zihao Li
- Centre for Advanced Macromolecular Design (CAMD) and the Australian Centre for Nanotechnology (ACN), School of Chemistry , University of New South Wales , Sydney 2052 , Australia
| | - Shashank Kosuri
- Department of Biomedical Engineering , Rutgers, The State University of New Jersey , Piscataway , New Jersey 08854 , United States
| | - Henry Foster
- Centre for Advanced Macromolecular Design (CAMD) and the Australian Centre for Nanotechnology (ACN), School of Chemistry , University of New South Wales , Sydney 2052 , Australia
| | - Jarrod Cohen
- New Jersey Center for Biomaterials , Rutgers, The State University of New Jersey , Piscataway , New Jersey 08854 , United States
| | - Coline Jumeaux
- Department of Materials, Department of Bioengineering, and the Institute for Biomedical Engineering , Imperial College London , London SW7 2AZ , United Kingdom.,Department of Medical Biochemistry and Biophysics , Karolinska Institutet , SE-17177 , Stockholm , Sweden
| | - Molly M Stevens
- Department of Materials, Department of Bioengineering, and the Institute for Biomedical Engineering , Imperial College London , London SW7 2AZ , United Kingdom.,Department of Medical Biochemistry and Biophysics , Karolinska Institutet , SE-17177 , Stockholm , Sweden
| | - Robert Chapman
- Centre for Advanced Macromolecular Design (CAMD) and the Australian Centre for Nanotechnology (ACN), School of Chemistry , University of New South Wales , Sydney 2052 , Australia
| | - Adam J Gormley
- Department of Biomedical Engineering , Rutgers, The State University of New Jersey , Piscataway , New Jersey 08854 , United States
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31
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Holland JP, Gut M, Klingler S, Fay R, Guillou A. Photochemical Reactions in the Synthesis of Protein-Drug Conjugates. Chemistry 2019; 26:33-48. [PMID: 31599057 DOI: 10.1002/chem.201904059] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Indexed: 12/15/2022]
Abstract
The ability to modify biologically active molecules such as antibodies with drug molecules, fluorophores or radionuclides is crucial in drug discovery and target identification. Classic chemistry used for protein functionalisation relies almost exclusively on thermochemically mediated reactions. Our recent experiments have begun to explore the use of photochemistry to effect rapid and efficient protein functionalisation. This article introduces some of the principles and objectives of using photochemically activated reagents for protein ligation. The concept of simultaneous photoradiosynthesis of radiolabelled antibodies for use in molecular imaging is introduced as a working example. Notably, the goal of producing functionalised proteins in the absence of pre-association (non-covalent ligand-protein binding) introduces requirements that are distinct from the more regular use of photoactive groups in photoaffinity labelling. With this in mind, the chemistry of thirteen different classes of photoactivatable reagents that react through the formation of intermediate carbenes, electrophiles, dienes, or radicals, is assessed.
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Affiliation(s)
- Jason P Holland
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland
| | - Melanie Gut
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland
| | - Simon Klingler
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland
| | - Rachael Fay
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland
| | - Amaury Guillou
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland
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32
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Aubert S, Bezagu M, Spivey AC, Arseniyadis S. Spatial and temporal control of chemical processes. Nat Rev Chem 2019. [DOI: 10.1038/s41570-019-0139-6] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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33
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Mayer SV, Murnauer A, Wrisberg M, Jokisch M, Lang K. Photo‐induced and Rapid Labeling of Tetrazine‐Bearing Proteins via Cyclopropenone‐Caged Bicyclononynes. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201908209] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Susanne V. Mayer
- Center for Integrated Protein Science Munich (CIPSM) Department of Chemistry, Group of Synthetic Biochemistry Technical University of Munich Institute for Advanced Study Lichtenbergstr. 4 85748 Garching Germany
| | - Anton Murnauer
- Center for Integrated Protein Science Munich (CIPSM) Department of Chemistry, Group of Synthetic Biochemistry Technical University of Munich Institute for Advanced Study Lichtenbergstr. 4 85748 Garching Germany
| | - Marie‐Kristin Wrisberg
- Center for Integrated Protein Science Munich (CIPSM) Department of Chemistry, Group of Synthetic Biochemistry Technical University of Munich Institute for Advanced Study Lichtenbergstr. 4 85748 Garching Germany
| | - Marie‐Lena Jokisch
- Center for Integrated Protein Science Munich (CIPSM) Department of Chemistry, Group of Synthetic Biochemistry Technical University of Munich Institute for Advanced Study Lichtenbergstr. 4 85748 Garching Germany
| | - Kathrin Lang
- Center for Integrated Protein Science Munich (CIPSM) Department of Chemistry, Group of Synthetic Biochemistry Technical University of Munich Institute for Advanced Study Lichtenbergstr. 4 85748 Garching Germany
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34
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Mayer SV, Murnauer A, von Wrisberg MK, Jokisch ML, Lang K. Photo-induced and Rapid Labeling of Tetrazine-Bearing Proteins via Cyclopropenone-Caged Bicyclononynes. Angew Chem Int Ed Engl 2019; 58:15876-15882. [PMID: 31476269 PMCID: PMC6856800 DOI: 10.1002/anie.201908209] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2019] [Revised: 08/21/2019] [Indexed: 12/22/2022]
Abstract
Inverse electron‐demand Diels–Alder cycloadditions (iEDDAC) between tetrazines and strained alkenes/alkynes have emerged as essential tools for studying and manipulating biomolecules. A light‐triggered version of iEDDAC (photo‐iEDDAC) is presented that confers spatio‐temporal control to bioorthogonal labeling in vitro and in cellulo. A cyclopropenone‐caged dibenzoannulated bicyclo[6.1.0]nonyne probe (photo‐DMBO) was designed that is unreactive towards tetrazines before light‐activation, but engages in iEDDAC after irradiation at 365 nm. Aminoacyl tRNA synthetase/tRNA pairs were discovered for efficient site‐specific incorporation of tetrazine‐containing amino acids into proteins in living cells. In situ light activation of photo‐DMBO conjugates allows labeling of tetrazine‐modified proteins in living E. coli. This allows proteins in living cells to be modified in a spatio‐temporally controlled manner and may be extended to photo‐induced and site‐specific protein labeling in animals.
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Affiliation(s)
- Susanne V Mayer
- Center for Integrated Protein Science Munich (CIPSM), Department of Chemistry, Group of Synthetic Biochemistry, Technical University of Munich, Institute for Advanced Study, Lichtenbergstr. 4, 85748, Garching, Germany
| | - Anton Murnauer
- Center for Integrated Protein Science Munich (CIPSM), Department of Chemistry, Group of Synthetic Biochemistry, Technical University of Munich, Institute for Advanced Study, Lichtenbergstr. 4, 85748, Garching, Germany
| | - Marie-Kristin von Wrisberg
- Center for Integrated Protein Science Munich (CIPSM), Department of Chemistry, Group of Synthetic Biochemistry, Technical University of Munich, Institute for Advanced Study, Lichtenbergstr. 4, 85748, Garching, Germany
| | - Marie-Lena Jokisch
- Center for Integrated Protein Science Munich (CIPSM), Department of Chemistry, Group of Synthetic Biochemistry, Technical University of Munich, Institute for Advanced Study, Lichtenbergstr. 4, 85748, Garching, Germany
| | - Kathrin Lang
- Center for Integrated Protein Science Munich (CIPSM), Department of Chemistry, Group of Synthetic Biochemistry, Technical University of Munich, Institute for Advanced Study, Lichtenbergstr. 4, 85748, Garching, Germany
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35
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McNelles SA, Pantaleo JL, Meichsner E, Adronov A. Strain-Promoted Azide-Alkyne Cycloaddition-Mediated Step-Growth Polymerization. Macromolecules 2019. [DOI: 10.1021/acs.macromol.9b01609] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Stuart A. McNelles
- Department of Chemistry & Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Julia L. Pantaleo
- Department of Chemistry & Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Eric Meichsner
- Department of Chemistry & Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
| | - Alex Adronov
- Department of Chemistry & Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1
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36
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Feng Z, Li D, Zhang M, Shao T, Shen Y, Tian X, Zhang Q, Li S, Wu J, Tian Y. Enhanced three-photon activity triggered by the AIE behaviour of a novel terpyridine-based Zn(ii) complex bearing a thiophene bridge. Chem Sci 2019; 10:7228-7232. [PMID: 31588291 PMCID: PMC6677111 DOI: 10.1039/c9sc01705d] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2019] [Accepted: 06/06/2019] [Indexed: 12/12/2022] Open
Abstract
Multiphoton bioimaging benefits from good penetration of tissue, low phototoxicity and high resolution. Hence, development of efficient multiphoton imaging agents is highly desirable but remains challenging. Herein, a novel terpyridine-based Zn(ii) complex bearing a thiophene bridge was designed rationally and fabricated. Thanks to its aggregation-induced emission (AIE), DZ1 emitted bright yellow-green fluorescence (λ em = 575 nm) under physiological conditions. The three-photon spectral changes of DZ1 when binding with RNA unambiguously reflected its RNA-specific targeting behaviour, resulting in twofold enhancement in three-photon action cross-sections located at the second near-infrared window (1700 nm).
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Affiliation(s)
- Zhihui Feng
- Institutes of Physics Science and Information Technology , College of Chemistry and Chemical Engineering , Key Laboratory of Functional Inorganic Materials Chemistry of Anhui Province , Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials , Anhui University , Hefei 230601 , People's Republic of China . ;
| | - Dandan Li
- Institutes of Physics Science and Information Technology , College of Chemistry and Chemical Engineering , Key Laboratory of Functional Inorganic Materials Chemistry of Anhui Province , Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials , Anhui University , Hefei 230601 , People's Republic of China . ;
| | - Mingzhu Zhang
- Institutes of Physics Science and Information Technology , College of Chemistry and Chemical Engineering , Key Laboratory of Functional Inorganic Materials Chemistry of Anhui Province , Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials , Anhui University , Hefei 230601 , People's Republic of China . ;
| | - Tao Shao
- Institutes of Physics Science and Information Technology , College of Chemistry and Chemical Engineering , Key Laboratory of Functional Inorganic Materials Chemistry of Anhui Province , Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials , Anhui University , Hefei 230601 , People's Republic of China . ;
| | - Yu Shen
- Institutes of Physics Science and Information Technology , College of Chemistry and Chemical Engineering , Key Laboratory of Functional Inorganic Materials Chemistry of Anhui Province , Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials , Anhui University , Hefei 230601 , People's Republic of China . ;
| | - Xiaohe Tian
- School of Life Science , Anhui University , Hefei 230601 , P. R. China
| | - Qiong Zhang
- Institutes of Physics Science and Information Technology , College of Chemistry and Chemical Engineering , Key Laboratory of Functional Inorganic Materials Chemistry of Anhui Province , Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials , Anhui University , Hefei 230601 , People's Republic of China . ;
| | - Shengli Li
- Institutes of Physics Science and Information Technology , College of Chemistry and Chemical Engineering , Key Laboratory of Functional Inorganic Materials Chemistry of Anhui Province , Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials , Anhui University , Hefei 230601 , People's Republic of China . ;
| | - Jieying Wu
- Institutes of Physics Science and Information Technology , College of Chemistry and Chemical Engineering , Key Laboratory of Functional Inorganic Materials Chemistry of Anhui Province , Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials , Anhui University , Hefei 230601 , People's Republic of China . ;
| | - Yupeng Tian
- Institutes of Physics Science and Information Technology , College of Chemistry and Chemical Engineering , Key Laboratory of Functional Inorganic Materials Chemistry of Anhui Province , Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials , Anhui University , Hefei 230601 , People's Republic of China . ;
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37
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Mishiro K, Kimura T, Furuyama T, Kunishima M. Phototriggered Active Alkyne Generation from Cyclopropenones with Visible Light-Responsive Photocatalysts. Org Lett 2019; 21:4101-4105. [DOI: 10.1021/acs.orglett.9b01280] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Kenji Mishiro
- Institute for Frontier Science Initiative, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
| | - Takeshi Kimura
- Faculty of Pharmaceutical Sciences, Institute of Medical, Pharmaceutical, and Health Sciences, Kanazawa University,
Kakuma-machi, Kanazawa 920-1192, Japan
| | - Taniyuki Furuyama
- Graduate School of Natural Science and Technology, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
- Japan Science and Technology Agency (JST)-PRESTO, 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan
| | - Munetaka Kunishima
- Faculty of Pharmaceutical Sciences, Institute of Medical, Pharmaceutical, and Health Sciences, Kanazawa University,
Kakuma-machi, Kanazawa 920-1192, Japan
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38
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Abstract
The bioorthogonal reaction toolbox contains approximately two-dozen unique chemistries that permit selective tagging and probing of biomolecules. Over the past two decades, significant effort has been devoted to optimizing and discovering bioorthogonal reagents that are faster, fluorogenic, and orthogonal to the already existing bioorthogonal repertoire. Conversely, efforts to explore bioorthogonal reagents whose reactivity can be controlled in space and/or time are limited. The "activatable" bioorthogonal reagents that do exist are often unimodal, meaning that their reagent's activation method cannot be easily modified to enable activation with red-shifted wavelengths, enzymes, or metabolic-byproducts and ions like H2O2 or Fe3+. Here, we summarize the available activatable bioorthogonal reagents with a focus on our recent addition: modular caged cyclopropenes. We designed caged cyclopropenes to be unreactive to their bioorthogonal partner until they are activated through the removal of the cage by light, an enzyme, or another reaction partner. To accomplish this, their structure includes a nitrogen atom at the cyclopropene C3 position that is decorated with the desired caging group through a carbamate linkage. This 3-N cyclopropene system can allow control of cyclopropene reactivity using a multitude of already available photo- and enzyme-caging groups. Additionally, this cyclopropene scaffold can enable metabolic-byproduct or ion activation of bioorthogonal reactions.
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Affiliation(s)
- Pratik Kumar
- Department of Chemistry, Stony Brook University, Stony Brook, NY, United States
| | - Scott T Laughlin
- Department of Chemistry, Stony Brook University, Stony Brook, NY, United States; Institute of Chemical Biology and Drug Discovery, Stony Brook University, Stony Brook, NY, United States.
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39
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Alabugin A. Near-IR Photochemistry for Biology: Exploiting the Optical Window of Tissue. Photochem Photobiol 2019; 95:722-732. [PMID: 30536737 DOI: 10.1111/php.13068] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Accepted: 12/02/2018] [Indexed: 01/04/2023]
Abstract
Photoactive molecules enable much of modern biology and biochemistry-a vast library of fluorescent chromophores is used to track and label cellular structures and macromolecules. However, photochemistry is better known to the synthetic or physical organic chemist as a "light switch" that turns on unusual excited-state reactivity, isomerization, or dynamic adjustment of structure. This review details a rapidly growing approach to biophotochemistry that uses low-energy near-IR wavelengths not only for imaging, but also for close spatial control over chemical switching events in biosystems. Emphasis is placed on topics of biomedical interest: release of gaseous biological messengers, uncaging of drugs, nano-therapeutics, and modification of biomaterials.
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Affiliation(s)
- Alexander Alabugin
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA
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40
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Li J, Kong H, Huang L, Cheng B, Qin K, Zheng M, Yan Z, Zhang Y. Visible Light-Initiated Bioorthogonal Photoclick Cycloaddition. J Am Chem Soc 2018; 140:14542-14546. [DOI: 10.1021/jacs.8b08175] [Citation(s) in RCA: 72] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Jinbo Li
- State Key Laboratory of Analytical Chemistry for Life Sciences, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Hao Kong
- State Key Laboratory of Analytical Chemistry for Life Sciences, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Lei Huang
- State Key Laboratory of Analytical Chemistry for Life Sciences, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Bo Cheng
- College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Ke Qin
- College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Mengmeng Zheng
- State Key Laboratory of Analytical Chemistry for Life Sciences, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Zheng Yan
- State Key Laboratory of Analytical Chemistry for Life Sciences, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Yan Zhang
- State Key Laboratory of Analytical Chemistry for Life Sciences, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
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41
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Abstract
The conjugation of biomolecules can impart materials with the bioactivity necessary to modulate specific cell behaviors. While the biological roles of particular polypeptide, oligonucleotide, and glycan structures have been extensively reviewed, along with the influence of attachment on material structure and function, the key role played by the conjugation strategy in determining activity is often overlooked. In this review, we focus on the chemistry of biomolecule conjugation and provide a comprehensive overview of the key strategies for achieving controlled biomaterial functionalization. No universal method exists to provide optimal attachment, and here we will discuss both the relative advantages and disadvantages of each technique. In doing so, we highlight the importance of carefully considering the impact and suitability of a particular technique during biomaterial design.
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Affiliation(s)
- Christopher D. Spicer
- Department
of Medical Biochemistry and Biophysics, Karolinska Institutet, Scheeles Väg 2, Stockholm, Sweden
| | - E. Thomas Pashuck
- NJ
Centre for Biomaterials, Rutgers University, 145 Bevier Road, Piscataway, New Jersey United States
| | - Molly M. Stevens
- Department
of Medical Biochemistry and Biophysics, Karolinska Institutet, Scheeles Väg 2, Stockholm, Sweden
- Department
of Materials, Department of Bioengineering, and Institute of Biomedical Engineering, Imperial College London, Exhibition Road, London, United Kingdom
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42
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Gahtory D, Sen R, Kuzmyn AR, Escorihuela J, Zuilhof H. Strain-Promoted Cycloaddition of Cyclopropenes with o-Quinones: A Rapid Click Reaction. Angew Chem Int Ed Engl 2018; 57:10118-10122. [PMID: 29542846 PMCID: PMC6099469 DOI: 10.1002/anie.201800937] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Indexed: 02/06/2023]
Abstract
Novel click reactions are of continued interest in fields as diverse as bio-conjugation, polymer science and surface chemistry. Qualification as a proper "click" reaction requires stringent criteria, including fast kinetics and high conversion, to be met. Herein, we report a novel strain-promoted cycloaddition between cyclopropenes and o-quinones in solution and on a surface. We demonstrate the "click character" of the reaction in solution and on surfaces for both monolayer and polymer brush functionalization.
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Affiliation(s)
- Digvijay Gahtory
- Laboratory of Organic ChemistryWageningen University and ResearchStippeneng 46708WEWageningenThe Netherlands
| | - Rickdeb Sen
- Laboratory of Organic ChemistryWageningen University and ResearchStippeneng 46708WEWageningenThe Netherlands
| | - Andriy R. Kuzmyn
- Laboratory of Organic ChemistryWageningen University and ResearchStippeneng 46708WEWageningenThe Netherlands
| | - Jorge Escorihuela
- Departamento de Química OrgánicaFacultad de QuímicaUniversidad de ValenciaAvda. Vicente Andrés Estellés s.n.46100-BurjassotValenciaSpain
| | - Han Zuilhof
- Laboratory of Organic ChemistryWageningen University and ResearchStippeneng 46708WEWageningenThe Netherlands
- School of Pharmaceutical Sciences and TechnologyTianjin University92 Weijin RoadTianjinP.R. China
- Department of Chemical and Materials EngineeringKing Abdulaziz UniversityJeddahSaudi Arabia
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43
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Zhang L, Zhang X, Yao Z, Jiang S, Deng J, Li B, Yu Z. Discovery of Fluorogenic Diarylsydnone-Alkene Photoligation: Conversion of ortho-Dual-Twisted Diarylsydnones into Planar Pyrazolines. J Am Chem Soc 2018; 140:7390-7394. [DOI: 10.1021/jacs.8b02493] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Linmeng Zhang
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu 610064, People’s Republic of China
| | - Xiaocui Zhang
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu 610064, People’s Republic of China
| | - Zhuojun Yao
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu 610064, People’s Republic of China
| | - Shichao Jiang
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu 610064, People’s Republic of China
| | - Jiajie Deng
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu 610064, People’s Republic of China
| | - Bo Li
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu 610064, People’s Republic of China
| | - Zhipeng Yu
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu 610064, People’s Republic of China
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44
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Gahtory D, Sen R, Kuzmyn AR, Escorihuela J, Zuilhof H. Strain-Promoted Cycloaddition of Cyclopropenes with o
-Quinones: A Rapid Click Reaction. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201800937] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Digvijay Gahtory
- Laboratory of Organic Chemistry; Wageningen University and Research; Stippeneng 4 6708 WE Wageningen The Netherlands
| | - Rickdeb Sen
- Laboratory of Organic Chemistry; Wageningen University and Research; Stippeneng 4 6708 WE Wageningen The Netherlands
| | - Andriy R. Kuzmyn
- Laboratory of Organic Chemistry; Wageningen University and Research; Stippeneng 4 6708 WE Wageningen The Netherlands
| | - Jorge Escorihuela
- Departamento de Química Orgánica; Facultad de Química; Universidad de Valencia; Avda. Vicente Andrés Estellés s.n. 46100-Burjassot Valencia Spain
| | - Han Zuilhof
- Laboratory of Organic Chemistry; Wageningen University and Research; Stippeneng 4 6708 WE Wageningen The Netherlands
- School of Pharmaceutical Sciences and Technology; Tianjin University; 92 Weijin Road Tianjin P.R. China
- Department of Chemical and Materials Engineering; King Abdulaziz University; Jeddah Saudi Arabia
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45
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Slanina T, Šebej P. Visible-light-activated photoCORMs: rational design of CO-releasing organic molecules absorbing in the tissue-transparent window. Photochem Photobiol Sci 2018; 17:692-710. [DOI: 10.1039/c8pp00096d] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Rational design of visible-light-activatable transition-metal-free CO-releasing molecules with an emphasis on mechanistic details of the CO release.
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Affiliation(s)
- Tomáš Slanina
- Institute for Organic Chemistry and Chemical Biology
- Goethe-University Frankfurt
- 60438 Frankfurt
- Germany
| | - Peter Šebej
- Research Centre for Toxic Compounds in the Environment
- Faculty of Science
- Masaryk University
- 625 00 Brno
- Czech Republic
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