1
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Hao BC, Zheng YY, Li ZH, Zheng CJ, Wang CY, Chen M. Targeted isolation of prenylated indole alkaloids from the marine-derived fungus Penicillium janthinellum HK1‑6 using molecular networking. Nat Prod Res 2024; 38:2252-2257. [PMID: 36718098 DOI: 10.1080/14786419.2023.2171401] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2022] [Revised: 12/28/2022] [Accepted: 01/13/2023] [Indexed: 02/01/2023]
Abstract
Four prenylated indole alkaloids (1-4) were targeted isolated from the mangrove rhizosphere soil-derived fungus Penicillium janthinellum HK1-6 by using molecular networking strategies. Among them, the planar structure and relative configuration of notoamide X (1) were elucidated by detailed analysis of the spectroscopic data especially the NOESY spectrum for the first time and its absolute configuration was determined by ECD spectrum. Furthermore, curated molecular networks of MS/MS data were generated with GNPS which allowed highlighting six prenylated indole alkaloids (5, 6, 8, 9, 11, 12) that had not previously been identified in this fungus and two (7, 10) that had never been observed in any fungus. The MS/MS fragmentation pathway of these prenylated indole alkaloids was summarized.
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Affiliation(s)
- Bao-Cong Hao
- Marine Science & Technology Institute, College of Environmental Science & Engineering, Yangzhou University, Yangzhou City, Jiangsu Province, People's Republic of China
| | - Yao-Yao Zheng
- Marine Science & Technology Institute, College of Environmental Science & Engineering, Yangzhou University, Yangzhou City, Jiangsu Province, People's Republic of China
- Key Laboratory of Marine Drugs, the Ministry of Education of China, School of Medicine and Pharmacy, Ocean University of China, Qingdao, People's Republic of China
| | - Zhong-Hui Li
- Marine Science & Technology Institute, College of Environmental Science & Engineering, Yangzhou University, Yangzhou City, Jiangsu Province, People's Republic of China
- Key Laboratory of Marine Drugs, the Ministry of Education of China, School of Medicine and Pharmacy, Ocean University of China, Qingdao, People's Republic of China
| | - Cai-Juan Zheng
- Key Laboratory of Tropical Medicinal Plant Chemistry of Hainan Province, College of Chemistry and Chemical Engineering, Hainan Normal University, Haikou, China
| | - Chang-Yun Wang
- Key Laboratory of Marine Drugs, the Ministry of Education of China, School of Medicine and Pharmacy, Ocean University of China, Qingdao, People's Republic of China
- Laboratory for Marine Drugs and Bioproducts, Qingdao National Laboratory for Marine Science and Technology, Qingdao, People's Republic of China
| | - Min Chen
- Marine Science & Technology Institute, College of Environmental Science & Engineering, Yangzhou University, Yangzhou City, Jiangsu Province, People's Republic of China
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2
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Nickles GR, Oestereicher B, Keller NP, Drott M. Mining for a new class of fungal natural products: the evolution, diversity, and distribution of isocyanide synthase biosynthetic gene clusters. Nucleic Acids Res 2023; 51:7220-7235. [PMID: 37427794 PMCID: PMC10415135 DOI: 10.1093/nar/gkad573] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Revised: 06/16/2023] [Accepted: 07/06/2023] [Indexed: 07/11/2023] Open
Abstract
The products of non-canonical isocyanide synthase (ICS) biosynthetic gene clusters (BGCs) mediate pathogenesis, microbial competition, and metal-homeostasis through metal-associated chemistry. We sought to enable research into this class of compounds by characterizing the biosynthetic potential and evolutionary history of these BGCs across the Fungal Kingdom. We amalgamated a pipeline of tools to predict BGCs based on shared promoter motifs and located 3800 ICS BGCs in 3300 genomes, making ICS BGCs the fifth largest class of specialized metabolites compared to canonical classes found by antiSMASH. ICS BGCs are not evenly distributed across fungi, with evidence of gene-family expansions in several Ascomycete families. We show that the ICS dit1/2 gene cluster family (GCF), which was prior only studied in yeast, is present in ∼30% of all Ascomycetes. The dit variety ICS exhibits greater similarity to bacterial ICS than other fungal ICS, suggesting a potential convergence of the ICS backbone domain. The evolutionary origins of the dit GCF in Ascomycota are ancient and these genes are diversifying in some lineages. Our results create a roadmap for future research into ICS BGCs. We developed a website (https://isocyanides.fungi.wisc.edu/) that facilitates the exploration and downloading of all identified fungal ICS BGCs and GCFs.
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Affiliation(s)
- Grant R Nickles
- Department of Medical Microbiology and Immunology, University of Wisconsin—Madison, Madison, WI 53706, USA
| | | | - Nancy P Keller
- Department of Medical Microbiology and Immunology, University of Wisconsin—Madison, Madison, WI 53706, USA
- Department of Plant Pathology, University of Wisconsin—Madison, Madison, WI 53706, USA
| | - Milton T Drott
- USDA-ARS Cereal Disease Lab (CDL), St. Paul, MN 55108, USA
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3
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Nicoletti R, Andolfi A, Becchimanzi A, Salvatore MM. Anti-Insect Properties of Penicillium Secondary Metabolites. Microorganisms 2023; 11:1302. [PMID: 37317276 DOI: 10.3390/microorganisms11051302] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Revised: 05/13/2023] [Accepted: 05/14/2023] [Indexed: 06/16/2023] Open
Abstract
In connection with their widespread occurrence in diverse environments and ecosystems, fungi in the genus Penicillium are commonly found in association with insects. In addition to some cases possibly implying a mutualistic relationship, this symbiotic interaction has mainly been investigated to verify the entomopathogenic potential in light of its possible exploitation in ecofriendly strategies for pest control. This perspective relies on the assumption that entomopathogenicity is often mediated by fungal products and that Penicillium species are renowned producers of bioactive secondary metabolites. Indeed, a remarkable number of new compounds have been identified and characterized from these fungi in past decades, the properties and possible applications of which in insect pest management are reviewed in this paper.
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Affiliation(s)
- Rosario Nicoletti
- Council for Agricultural Research and Economics, Research Center for Olive, Fruit and Citrus Crops, 81100 Caserta, Italy
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy
| | - Anna Andolfi
- Department of Chemical Sciences, University of Naples Federico II, 80126 Naples, Italy
- BAT Center-Interuniversity Center for Studies on Bioinspired Agro-Environmental Technology, University of Naples Federico II, 80055 Portici, Italy
| | - Andrea Becchimanzi
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy
- BAT Center-Interuniversity Center for Studies on Bioinspired Agro-Environmental Technology, University of Naples Federico II, 80055 Portici, Italy
| | - Maria Michela Salvatore
- Department of Chemical Sciences, University of Naples Federico II, 80126 Naples, Italy
- Institute for Sustainable Plant Protection, National Research Council, 80055 Portici, Italy
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4
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Nickles GR, Oestereicher B, Keller NP, Drott MT. Mining for a New Class of Fungal Natural Products: The Evolution, Diversity, and Distribution of Isocyanide Synthase Biosynthetic Gene Clusters. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.04.17.537281. [PMID: 37131656 PMCID: PMC10153163 DOI: 10.1101/2023.04.17.537281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
The products of non-canonical isocyanide synthase (ICS) biosynthetic gene clusters (BGCs) have notable bioactivities that mediate pathogenesis, microbial competition, and metal-homeostasis through metal-associated chemistry. We sought to enable research into this class of compounds by characterizing the biosynthetic potential and evolutionary history of these BGCs across the Fungal Kingdom. We developed the first genome-mining pipeline to identify ICS BGCs, locating 3,800 ICS BGCs in 3,300 genomes. Genes in these clusters share promoter motifs and are maintained in contiguous groupings by natural selection. ICS BGCs are not evenly distributed across fungi, with evidence of gene-family expansions in several Ascomycete families. We show that the ICS dit1 / 2 gene cluster family (GCF), which was thought to only exist in yeast, is present in ∼30% of all Ascomycetes, including many filamentous fungi. The evolutionary history of the dit GCF is marked by deep divergences and phylogenetic incompatibilities that raise questions about convergent evolution and suggest selection or horizontal gene transfers have shaped the evolution of this cluster in some yeast and dimorphic fungi. Our results create a roadmap for future research into ICS BGCs. We developed a website ( www.isocyanides.fungi.wisc.edu ) that facilitates the exploration, filtering, and downloading of all identified fungal ICS BGCs and GCFs.
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Affiliation(s)
- Grant R. Nickles
- Department of Medical Microbiology and Immunology, University of Wisconsin—Madison, Madison, WI 53706, USA
| | | | - Nancy P. Keller
- Department of Medical Microbiology and Immunology, University of Wisconsin—Madison, Madison, WI 53706, USA
- Department of Plant Pathology, University of Wisconsin—Madison, Madison, WI 53706, USA
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5
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Wu J, Wang F, He LM, Zhou SY, Wang SB, Jia J, Hong K, Cai YS. Aculeaquamide A, cytotoxic paraherquamide from the marine fungus Aspergillus aculeatinus WHUF0198. Nat Prod Res 2021; 36:4388-4393. [PMID: 34720007 DOI: 10.1080/14786419.2021.1998047] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
A new paraherquamide named aculeaquamide A (1) was isolated from an EtOAc extract of Aspergillus aculeatinus WHF0198 culture media together with five known compounds. The structures of the isolated compounds were elucidated by analysis of NMR and MS data, and the absolute configurations of compound 1 was confirmed by CD spectroscopic methods. All isolated compounds were evaluated for their cytotoxicity against three human cancer cell lines, Bel-7402, A549, and HCT-116. Compounds 1 and 2 showed cytotoxicity against Bel-7402 with IC50 values of 3.3 and 1.9 μM, respectively.
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Affiliation(s)
- Jun Wu
- School of Pharmaceutical Sciences, Wuhan University, Wuhan, P. R. China
| | - Fuqian Wang
- Department of Pharmacy, Wuhan No.1 Hospital, Wuhan, P. R. China
| | - Li-Ming He
- School of Pharmaceutical Sciences, Wuhan University, Wuhan, P. R. China
| | - Si-Yuan Zhou
- School of Pharmaceutical Sciences, Wuhan University, Wuhan, P. R. China
| | - Shou-Bao Wang
- Beijing Key Laboratory of Drug Targets Identification and Drug Screening, Institute of Materia Medica, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, P. R. China
| | - Jia Jia
- Department of Pathogen Biology & Jiangsu Key Laboratory of Pathogen Biology & Helicobacter pylori Research Centre, Nanjing Medical University, Nanjing, P. R. China
| | - Kui Hong
- School of Pharmaceutical Sciences, Wuhan University, Wuhan, P. R. China
| | - You-Sheng Cai
- School of Pharmaceutical Sciences, Wuhan University, Wuhan, P. R. China
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6
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Recent advances in biocatalysis of nitrogen-containing heterocycles. Biotechnol Adv 2021; 54:107813. [PMID: 34450199 DOI: 10.1016/j.biotechadv.2021.107813] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 07/27/2021] [Accepted: 08/08/2021] [Indexed: 12/20/2022]
Abstract
Nitrogen-containing heterocycles (N-heterocycles) are ubiquitous in both organisms and pharmaceutical products. Biocatalysts are providing green approaches for synthesizing various N-heterocycles under mild reaction conditions. This review summarizes the recent advances in the biocatalysis of N-heterocycles through the discovery and engineering of natural N-heterocycle synthetic pathway, and the design of artificial synthetic routes, with an emphasis on biocatalysts applied in retrosynthetic design for preparing complex N-heterocycles. Furthermore, this review discusses the future prospects and challenges of biocatalysts involved in the synthesis of N-heterocycles.
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7
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Fraley AE, Sherman DH. Enzyme evolution in fungal indole alkaloid biosynthesis. FEBS J 2020; 287:1381-1402. [PMID: 32118354 PMCID: PMC7317620 DOI: 10.1111/febs.15270] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2019] [Revised: 11/24/2019] [Accepted: 02/27/2020] [Indexed: 12/28/2022]
Abstract
The class of fungal indole alkaloids containing the bicyclo[2.2.2]diazaoctane ring is comprised of diverse molecules that display a range of biological activities. While much interest has been garnered due to their therapeutic potential, this class of molecules also displays unique chemical functionality, making them intriguing synthetic targets. Many elegant and intricate total syntheses have been developed to generate these alkaloids, but the selectivity required to produce them in high yield presents great barriers. Alternatively, if we can understand the molecular mechanisms behind how fungi make these complex molecules, we can leverage the power of nature to perform these chemical transformations. Here, we describe the various studies regarding the evolutionary development of enzymes involved in fungal indole alkaloid biosynthesis.
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Affiliation(s)
- Amy E. Fraley
- Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, United States
- Department of Medicinal Chemistry, University of Michigan, Ann Arbor, MI 48109, United States
| | - David H. Sherman
- Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, United States
- Department of Medicinal Chemistry, University of Michigan, Ann Arbor, MI 48109, United States
- Department of Chemistry, University of Michigan, Ann Arbor, MI 48109, United States
- Department of Microbiology and Immunology, University of Michigan, Ann Arbor, MI 48109, United States
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8
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Houbraken J, Kocsubé S, Visagie C, Yilmaz N, Wang XC, Meijer M, Kraak B, Hubka V, Bensch K, Samson R, Frisvad J. Classification of Aspergillus, Penicillium, Talaromyces and related genera ( Eurotiales): An overview of families, genera, subgenera, sections, series and species. Stud Mycol 2020; 95:5-169. [PMID: 32855739 PMCID: PMC7426331 DOI: 10.1016/j.simyco.2020.05.002] [Citation(s) in RCA: 264] [Impact Index Per Article: 66.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
The Eurotiales is a relatively large order of Ascomycetes with members frequently having positive and negative impact on human activities. Species within this order gain attention from various research fields such as food, indoor and medical mycology and biotechnology. In this article we give an overview of families and genera present in the Eurotiales and introduce an updated subgeneric, sectional and series classification for Aspergillus and Penicillium. Finally, a comprehensive list of accepted species in the Eurotiales is given. The classification of the Eurotiales at family and genus level is traditionally based on phenotypic characters, and this classification has since been challenged using sequence-based approaches. Here, we re-evaluated the relationships between families and genera of the Eurotiales using a nine-gene sequence dataset. Based on this analysis, the new family Penicillaginaceae is introduced and four known families are accepted: Aspergillaceae, Elaphomycetaceae, Thermoascaceae and Trichocomaceae. The Eurotiales includes 28 genera: 15 genera are accommodated in the Aspergillaceae (Aspergillago, Aspergillus, Evansstolkia, Hamigera, Leiothecium, Monascus, Penicilliopsis, Penicillium, Phialomyces, Pseudohamigera, Pseudopenicillium, Sclerocleista, Warcupiella, Xerochrysium and Xeromyces), eight in the Trichocomaceae (Acidotalaromyces, Ascospirella, Dendrosphaera, Rasamsonia, Sagenomella, Talaromyces, Thermomyces, Trichocoma), two in the Thermoascaceae (Paecilomyces, Thermoascus) and one in the Penicillaginaceae (Penicillago). The classification of the Elaphomycetaceae was not part of this study, but according to literature two genera are present in this family (Elaphomyces and Pseudotulostoma). The use of an infrageneric classification system has a long tradition in Aspergillus and Penicillium. Most recent taxonomic studies focused on the sectional level, resulting in a well-established sectional classification in these genera. In contrast, a series classification in Aspergillus and Penicillium is often outdated or lacking, but is still relevant, e.g., the allocation of a species to a series can be highly predictive in what functional characters the species might have and might be useful when using a phenotype-based identification. The majority of the series in Aspergillus and Penicillium are invalidly described and here we introduce a new series classification. Using a phylogenetic approach, often supported by phenotypic, physiologic and/or extrolite data, Aspergillus is subdivided in six subgenera, 27 sections (five new) and 75 series (73 new, one new combination), and Penicillium in two subgenera, 32 sections (seven new) and 89 series (57 new, six new combinations). Correct identification of species belonging to the Eurotiales is difficult, but crucial, as the species name is the linking pin to information. Lists of accepted species are a helpful aid for researchers to obtain a correct identification using the current taxonomic schemes. In the most recent list from 2014, 339 Aspergillus, 354 Penicillium and 88 Talaromyces species were accepted. These numbers increased significantly, and the current list includes 446 Aspergillus (32 % increase), 483 Penicillium (36 % increase) and 171 Talaromyces (94 % increase) species, showing the large diversity and high interest in these genera. We expanded this list with all genera and species belonging to the Eurotiales (except those belonging to Elaphomycetaceae). The list includes 1 187 species, distributed over 27 genera, and contains MycoBank numbers, collection numbers of type and ex-type cultures, subgenus, section and series classification data, information on the mode of reproduction, and GenBank accession numbers of ITS, beta-tubulin (BenA), calmodulin (CaM) and RNA polymerase II second largest subunit (RPB2) gene sequences.
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Key Words
- Acidotalaromyces Houbraken, Frisvad & Samson
- Acidotalaromyces lignorum (Stolk) Houbraken, Frisvad & Samson
- Ascospirella Houbraken, Frisvad & Samson
- Ascospirella lutea (Zukal) Houbraken, Frisvad & Samson
- Aspergillus chaetosartoryae Hubka, Kocsubé & Houbraken
- Classification
- Evansstolkia Houbraken, Frisvad & Samson
- Evansstolkia leycettana (H.C. Evans & Stolk) Houbraken, Frisvad & Samson
- Hamigera brevicompacta (H.Z. Kong) Houbraken, Frisvad & Samson
- Infrageneric classification
- New combinations, series
- New combinations, species
- New genera
- New names
- New sections
- New series
- New taxa
- Nomenclature
- Paecilomyces lagunculariae (C. Ram) Houbraken, Frisvad & Samson
- Penicillaginaceae Houbraken, Frisvad & Samson
- Penicillago kabunica (Baghd.) Houbraken, Frisvad & Samson
- Penicillago mirabilis (Beliakova & Milko) Houbraken, Frisvad & Samson
- Penicillago moldavica (Milko & Beliakova) Houbraken, Frisvad & Samson
- Phialomyces arenicola (Chalab.) Houbraken, Frisvad & Samson
- Phialomyces humicoloides (Bills & Heredia) Houbraken, Frisvad & Samson
- Phylogeny
- Polythetic classes
- Pseudohamigera Houbraken, Frisvad & Samson
- Pseudohamigera striata (Raper & Fennell) Houbraken, Frisvad & Samson
- Talaromyces resinae (Z.T. Qi & H.Z. Kong) Houbraken & X.C. Wang
- Talaromyces striatoconidius Houbraken, Frisvad & Samson
- Taxonomic novelties: New family
- Thermoascus verrucosus (Samson & Tansey) Houbraken, Frisvad & Samson
- Thermoascus yaguchii Houbraken, Frisvad & Samson
- in Aspergillus: sect. Bispori S.W. Peterson, Varga, Frisvad, Samson ex Houbraken
- in Aspergillus: ser. Acidohumorum Houbraken & Frisvad
- in Aspergillus: ser. Inflati (Stolk & Samson) Houbraken & Frisvad
- in Penicillium: sect. Alfrediorum Houbraken & Frisvad
- in Penicillium: ser. Adametziorum Houbraken & Frisvad
- in Penicillium: ser. Alutacea (Pitt) Houbraken & Frisvad
- sect. Crypta Houbraken & Frisvad
- sect. Eremophila Houbraken & Frisvad
- sect. Formosana Houbraken & Frisvad
- sect. Griseola Houbraken & Frisvad
- sect. Inusitata Houbraken & Frisvad
- sect. Lasseniorum Houbraken & Frisvad
- sect. Polypaecilum Houbraken & Frisvad
- sect. Raperorum S.W. Peterson, Varga, Frisvad, Samson ex Houbraken
- sect. Silvatici S.W. Peterson, Varga, Frisvad, Samson ex Houbraken
- sect. Vargarum Houbraken & Frisvad
- ser. Alliacei Houbraken & Frisvad
- ser. Ambigui Houbraken & Frisvad
- ser. Angustiporcata Houbraken & Frisvad
- ser. Arxiorum Houbraken & Frisvad
- ser. Atramentosa Houbraken & Frisvad
- ser. Aurantiobrunnei Houbraken & Frisvad
- ser. Avenacei Houbraken & Frisvad
- ser. Bertholletiarum Houbraken & Frisvad
- ser. Biplani Houbraken & Frisvad
- ser. Brevicompacta Houbraken & Frisvad
- ser. Brevipedes Houbraken & Frisvad
- ser. Brunneouniseriati Houbraken & Frisvad
- ser. Buchwaldiorum Houbraken & Frisvad
- ser. Calidousti Houbraken & Frisvad
- ser. Canini Houbraken & Frisvad
- ser. Carbonarii Houbraken & Frisvad
- ser. Cavernicolarum Houbraken & Frisvad
- ser. Cervini Houbraken & Frisvad
- ser. Chevalierorum Houbraken & Frisvad
- ser. Cinnamopurpurea Houbraken & Frisvad
- ser. Circumdati Houbraken & Frisvad
- ser. Clavigera Houbraken & Frisvad
- ser. Conjuncti Houbraken & Frisvad
- ser. Copticolarum Houbraken & Frisvad
- ser. Coremiiformes Houbraken & Frisvad
- ser. Corylophila Houbraken & Frisvad
- ser. Costaricensia Houbraken & Frisvad
- ser. Cremei Houbraken & Frisvad
- ser. Crustacea (Pitt) Houbraken & Frisvad
- ser. Dalearum Houbraken & Frisvad
- ser. Deflecti Houbraken & Frisvad
- ser. Egyptiaci Houbraken & Frisvad
- ser. Erubescentia (Pitt) Houbraken & Frisvad
- ser. Estinogena Houbraken & Frisvad
- ser. Euglauca Houbraken & Frisvad
- ser. Fennelliarum Houbraken & Frisvad
- ser. Flavi Houbraken & Frisvad
- ser. Flavipedes Houbraken & Frisvad
- ser. Fortuita Houbraken & Frisvad
- ser. Fumigati Houbraken & Frisvad
- ser. Funiculosi Houbraken & Frisvad
- ser. Gallaica Houbraken & Frisvad
- ser. Georgiensia Houbraken & Frisvad
- ser. Goetziorum Houbraken & Frisvad
- ser. Gracilenta Houbraken & Frisvad
- ser. Halophilici Houbraken & Frisvad
- ser. Herqueorum Houbraken & Frisvad
- ser. Heteromorphi Houbraken & Frisvad
- ser. Hoeksiorum Houbraken & Frisvad
- ser. Homomorphi Houbraken & Frisvad
- ser. Idahoensia Houbraken & Frisvad
- ser. Implicati Houbraken & Frisvad
- ser. Improvisa Houbraken & Frisvad
- ser. Indica Houbraken & Frisvad
- ser. Japonici Houbraken & Frisvad
- ser. Jiangxiensia Houbraken & Frisvad
- ser. Kalimarum Houbraken & Frisvad
- ser. Kiamaensia Houbraken & Frisvad
- ser. Kitamyces Houbraken & Frisvad
- ser. Lapidosa (Pitt) Houbraken & Frisvad
- ser. Leporum Houbraken & Frisvad
- ser. Leucocarpi Houbraken & Frisvad
- ser. Livida Houbraken & Frisvad
- ser. Longicatenata Houbraken & Frisvad
- ser. Macrosclerotiorum Houbraken & Frisvad
- ser. Monodiorum Houbraken & Frisvad
- ser. Multicolores Houbraken & Frisvad
- ser. Neoglabri Houbraken & Frisvad
- ser. Neonivei Houbraken & Frisvad
- ser. Nidulantes Houbraken & Frisvad
- ser. Nigri Houbraken & Frisvad
- ser. Nivei Houbraken & Frisvad
- ser. Nodula Houbraken & Frisvad
- ser. Nomiarum Houbraken & Frisvad
- ser. Noonimiarum Houbraken & Frisvad
- ser. Ochraceorosei Houbraken & Frisvad
- ser. Olivimuriarum Houbraken & Frisvad
- ser. Osmophila Houbraken & Frisvad
- ser. Paradoxa Houbraken & Frisvad
- ser. Paxillorum Houbraken & Frisvad
- ser. Penicillioides Houbraken & Frisvad
- ser. Phoenicea Houbraken & Frisvad
- ser. Pinetorum (Pitt) Houbraken & Frisvad
- ser. Polypaecilum Houbraken & Frisvad
- ser. Pulvini Houbraken & Frisvad
- ser. Quercetorum Houbraken & Frisvad
- ser. Raistrickiorum Houbraken & Frisvad
- ser. Ramigena Houbraken & Frisvad
- ser. Restricti Houbraken & Frisvad
- ser. Robsamsonia Houbraken & Frisvad
- ser. Rolfsiorum Houbraken & Frisvad
- ser. Roseopurpurea Houbraken & Frisvad
- ser. Rubri Houbraken & Frisvad
- ser. Salinarum Houbraken & Frisvad
- ser. Samsoniorum Houbraken & Frisvad
- ser. Saturniformia Houbraken & Frisvad
- ser. Scabrosa Houbraken & Frisvad
- ser. Sclerotigena Houbraken & Frisvad
- ser. Sclerotiorum Houbraken & Frisvad
- ser. Sheariorum Houbraken & Frisvad
- ser. Simplicissima Houbraken & Frisvad
- ser. Soppiorum Houbraken & Frisvad
- ser. Sparsi Houbraken & Frisvad
- ser. Spathulati Houbraken & Frisvad
- ser. Spelaei Houbraken & Frisvad
- ser. Speluncei Houbraken & Frisvad
- ser. Spinulosa Houbraken & Frisvad
- ser. Stellati Houbraken & Frisvad
- ser. Steyniorum Houbraken & Frisvad
- ser. Sublectatica Houbraken & Frisvad
- ser. Sumatraensia Houbraken & Frisvad
- ser. Tamarindosolorum Houbraken & Frisvad
- ser. Teporium Houbraken & Frisvad
- ser. Terrei Houbraken & Frisvad
- ser. Thermomutati Houbraken & Frisvad
- ser. Thiersiorum Houbraken & Frisvad
- ser. Thomiorum Houbraken & Frisvad
- ser. Unguium Houbraken & Frisvad
- ser. Unilaterales Houbraken & Frisvad
- ser. Usti Houbraken & Frisvad
- ser. Verhageniorum Houbraken & Frisvad
- ser. Versicolores Houbraken & Frisvad
- ser. Virgata Houbraken & Frisvad
- ser. Viridinutantes Houbraken & Frisvad
- ser. Vitricolarum Houbraken & Frisvad
- ser. Wentiorum Houbraken & Frisvad
- ser. Westlingiorum Houbraken & Frisvad
- ser. Whitfieldiorum Houbraken & Frisvad
- ser. Xerophili Houbraken & Frisvad
- series Tularensia (Pitt) Houbraken & Frisvad
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Affiliation(s)
- J. Houbraken
- Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands
| | - S. Kocsubé
- Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary
| | - C.M. Visagie
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P. Bag X20, Hatfield, Pretoria, 0028, South Africa
| | - N. Yilmaz
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P. Bag X20, Hatfield, Pretoria, 0028, South Africa
| | - X.-C. Wang
- Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, No. 3, 1st Beichen West Road, Chaoyang District, Beijing, 100101, China
| | - M. Meijer
- Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands
| | - B. Kraak
- Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands
| | - V. Hubka
- Department of Botany, Charles University in Prague, Prague, Czech Republic
| | - K. Bensch
- Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands
| | - R.A. Samson
- Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands
| | - J.C. Frisvad
- Department of Biotechnology and Biomedicine Technical University of Denmark, Søltofts Plads, B. 221, Kongens Lyngby, DK 2800, Denmark
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9
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Fraley AE, Caddell Haatveit K, Ye Y, Kelly SP, Newmister SA, Yu F, Williams RM, Smith JL, Houk KN, Sherman DH. Molecular Basis for Spirocycle Formation in the Paraherquamide Biosynthetic Pathway. J Am Chem Soc 2020; 142:2244-2252. [PMID: 31904957 DOI: 10.1021/jacs.9b09070] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The paraherquamides are potent anthelmintic natural products with complex heptacyclic scaffolds. One key feature of these molecules is the spiro-oxindole moiety that lends a strained three-dimensional architecture to these structures. The flavin monooxygenase PhqK was found to catalyze spirocycle formation through two parallel pathways in the biosynthesis of paraherquamides A and G. Two new paraherquamides (K and L) were isolated from a ΔphqK strain of Penicillium simplicissimum, and subsequent enzymatic reactions with these compounds generated two additional metabolites, paraherquamides M and N. Crystal structures of PhqK in complex with various substrates provided a foundation for mechanistic analyses and computational studies. While it is evident that PhqK can react with various substrates, reaction kinetics and molecular dynamics simulations indicated that the dioxepin-containing paraherquamide L is the favored substrate. Through this effort, we have elucidated a key step in the biosynthesis of the paraherquamides and provided a rationale for the selective spirocyclization of these powerful anthelmintic agents.
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Affiliation(s)
| | - Kersti Caddell Haatveit
- Department of Chemistry and Biochemistry , University of California , Los Angeles , California 90095 , United States
| | | | | | | | | | - Robert M Williams
- Department of Chemistry , Colorado State University , Fort Collins , Colorado 80523 , United States.,University of Colorado Cancer Center , Aurora , Colorado 80045 , United States
| | | | - K N Houk
- Department of Chemistry and Biochemistry , University of California , Los Angeles , California 90095 , United States
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10
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Zheng YY, Shen NX, Liang ZY, Shen L, Chen M, Wang CY. Paraherquamide J, a new prenylated indole alkaloid from the marine-derived fungus Penicillium janthinellum HK1-6. Nat Prod Res 2019; 34:378-384. [PMID: 30623670 DOI: 10.1080/14786419.2018.1534105] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
A new prenylated indole alkaloid, named paraherquamide J (1), together with four known compounds (2-5), were isolated from the mangrove rhizosphere soil-derived fungus Penicillium janthinellum HK1-6. The planar structure and relative configuration of 1 were determined by detailed analysis of the spectroscopic data especially the NOESY spectrum. The absolute configuration of 1 was determined by ECD spectra. Compound 2 was first isolated as a natural product and named as paraherquamide K. All isolated metabolites were evaluated for their antibacterial, topoisomerase I (topo I) inhibitory activities and lethality towards brine shrimp Artemia salina.
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Affiliation(s)
- Yao-Yao Zheng
- Key Laboratory of Marine Drugs, the Ministry of Education of China, School of Medicine and Pharmacy, Ocean University of China, Qingdao, People's Republic of China.,Marine Science & Technology Institute, College of Environmental Science & Engineering, Yangzhou University, Yangzhou City, Jiangsu Province, People's Republic of China
| | - Nan-Xing Shen
- Marine Science & Technology Institute, College of Environmental Science & Engineering, Yangzhou University, Yangzhou City, Jiangsu Province, People's Republic of China
| | - Zhao-Yang Liang
- Key Laboratory of Marine Drugs, the Ministry of Education of China, School of Medicine and Pharmacy, Ocean University of China, Qingdao, People's Republic of China.,Marine Science & Technology Institute, College of Environmental Science & Engineering, Yangzhou University, Yangzhou City, Jiangsu Province, People's Republic of China
| | - Li Shen
- Institute of Translational Medicine, Medical College, Yangzhou University, Yangzhou City, Jiangsu Province, People's Republic of China.,Jiangsu Key laboratory of integrated traditional Chinese and Western Medicine for prevention and treatment of Senile Diseases, Yangzhou University, Yangzhou City, Jiangsu Province, People's Republic of China
| | - Min Chen
- Marine Science & Technology Institute, College of Environmental Science & Engineering, Yangzhou University, Yangzhou City, Jiangsu Province, People's Republic of China
| | - Chang-Yun Wang
- Key Laboratory of Marine Drugs, the Ministry of Education of China, School of Medicine and Pharmacy, Ocean University of China, Qingdao, People's Republic of China.,Laboratory for Marine Drugs and Bioproducts, Qingdao National Laboratory for Marine Science and Technology, Qingdao, People's Republic of China
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11
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Rizvi SAH, Ling S, Tian F, Liu J, Zeng X. Interference mechanism of Sophora alopecuroides L. alkaloids extract on host finding and selection of the Asian citrus psyllid Diaphorina citri Kuwayama (Hemiptera: Psyllidae). ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2019; 26:1548-1557. [PMID: 30430450 DOI: 10.1007/s11356-018-3733-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2018] [Accepted: 11/09/2018] [Indexed: 06/09/2023]
Abstract
Manipulating insect behavior through the deployment of semiochemicals offers a promising opportunity for protecting crops in a sustainable manner. Therefore, there is still a significant opportunity for the development of natural crop protectants as eco-friendly tools in pest management. In this context, the aim of the current investigation is to find a novel prophylactic against the Asian citrus psyllid (ACP) and to gain a better understanding of the host-finding and selection ability of the ACP towards Murraya paniculata seedlings treated with Sophora alopecuroides alkaloids extract (SAAE). Our results indicate that foliar application of SAAE influences the psyllid host-finding and selection process. The behavioral assay with M. paniculata seedlings treated with 15 and 30 mg/mL of SAAE, with masked visual cues, revealed that only 6.6 and 10.4% psyllids were able to locate the host in the vials. The results also indicate that citrus psyllids mainly rely on both visual and olfaction in host-finding and selection. In choice settling experiments, psyllids settled almost completely on control seedlings rather than on seedlings treated with SAAE at a concentration of 30 mg/mL. Chemical analyses of the alkaloids extract revealed the presence of sophocarpine (33.90%), sophoridine (6.23%), anagyrine (2.77%), matrine (2.38%), lupanine (1.68%) aphylline (0.89%), and sophoramine (0.75%). In further behavioral bioassays with the dominant alkaloids sophocarpine and sophoridine, the alkaloids repelled ACP at higher concentrations of 50 and 70 mg/mL as compared to SAAE. Furthermore, the 50 mg/mL (1:1, v/v) combination of sophocarpine and sophoridine displayed a synergistic effect and showed the maximum behavioral effect as compared to the individual alkaloid. Based on our results, SAAE makes M. paniculata seedlings unattractive to the psyllids, and therefore, alkaloids could be used in reducing the colonization of citrus plants, subsequently curtailing HLB infection.
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Affiliation(s)
- Syed Arif Hussain Rizvi
- Guangdong Engineering Research Center for Insect Behavior Regulation, College of Agriculture, South China Agricultural University, Guangzhou, 510642, China
| | - Siquan Ling
- Guangdong Engineering Research Center for Insect Behavior Regulation, College of Agriculture, South China Agricultural University, Guangzhou, 510642, China
| | - Fajun Tian
- Guangdong Engineering Research Center for Insect Behavior Regulation, College of Agriculture, South China Agricultural University, Guangzhou, 510642, China
| | - Jiali Liu
- Guangdong Engineering Research Center for Insect Behavior Regulation, College of Agriculture, South China Agricultural University, Guangzhou, 510642, China
| | - Xinnian Zeng
- Guangdong Engineering Research Center for Insect Behavior Regulation, College of Agriculture, South China Agricultural University, Guangzhou, 510642, China.
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12
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Degenkolb T, Vilcinskas A. Metabolites from nematophagous fungi and nematicidal natural products from fungi as alternatives for biological control. Part II: metabolites from nematophagous basidiomycetes and non-nematophagous fungi. Appl Microbiol Biotechnol 2016; 100:3813-24. [PMID: 26728016 PMCID: PMC4824808 DOI: 10.1007/s00253-015-7234-5] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2015] [Revised: 11/29/2015] [Accepted: 12/02/2015] [Indexed: 11/05/2022]
Abstract
In this second section of a two-part mini-review article, we introduce 101 further nematicidal and non-nematicidal secondary metabolites biosynthesized by nematophagous basidiomycetes or non-nematophagous ascomycetes and basidiomycetes. Several of these compounds have promising nematicidal activity and deserve further and more detailed analysis. Thermolides A and B, omphalotins, ophiobolins, bursaphelocides A and B, illinitone A, pseudohalonectrins A and B, dichomitin B, and caryopsomycins A–C are excellent candidates or lead compounds for the development of biocontrol strategies for phytopathogenic nematodes. Paraherquamides, clonostachydiol, and nafuredins offer promising leads for the development of formulations against the intestinal nematodes of ruminants.
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Affiliation(s)
- Thomas Degenkolb
- Institute for Insect Biotechnology, Justus-Liebig-University of Giessen, Heinrich-Buff-Ring 26-32, D-35392, Giessen, Germany
| | - Andreas Vilcinskas
- Institute for Insect Biotechnology, Justus-Liebig-University of Giessen, Heinrich-Buff-Ring 26-32, D-35392, Giessen, Germany. .,Department of Bioresources, Fraunhofer Institute for Molecular Biology and Applied Ecology, Winchester Strasse 2, D-35394, Giessen, Germany.
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13
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Kwon J, Seo YH, Lee JE, Seo EK, Li S, Guo Y, Hong SB, Park SY, Lee D. Spiroindole Alkaloids and Spiroditerpenoids from Aspergillus duricaulis and Their Potential Neuroprotective Effects. JOURNAL OF NATURAL PRODUCTS 2015; 78:2572-2579. [PMID: 26517152 DOI: 10.1021/acs.jnatprod.5b00508] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Six new spiroindole alkaloids (1-6) and two new spiroditerpenoids (7 and 8) were isolated from an EtOAc extract of Aspergillus duricaulis culture media together with five known compounds. The structures of the isolated compounds were elucidated by analysis of NMR and MS data, and the absolute configurations of compounds 1-8 were confirmed by CD spectroscopic methods. All isolated compounds were evaluated for their inhibition of beta-amyloid (Aβ) aggregate-induced toxicity in PC12 cells and Aβ aggregation. Compounds 8-11 efficiently protected PC12 cells against Aβ aggregate-induced toxicity, but only compound 9 inhibited Aβ aggregation. On the other hand, compounds 4 and 5 exhibited moderate inhibitory effects on Aβ aggregation, but did not protect the cells from Aβ aggregate-induced toxicity. Preincubating Aβ monomers with compounds 4 and 5 rescued PC12 cells against Aβ aggregate-induced toxicity by reducing neurotoxic Aβ aggregates. Compound 9 inhibited both Aβ aggregate-induced toxicity and Aβ aggregation.
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Affiliation(s)
- Jaeyoung Kwon
- Department of Biosystems and Biotechnology, College of Life Sciences and Biotechnology, Korea University , Seoul 02841, Republic of Korea
| | - Young Hye Seo
- Department of Biosystems and Biotechnology, College of Life Sciences and Biotechnology, Korea University , Seoul 02841, Republic of Korea
| | - Jae-Eun Lee
- Laboratory of Pharmacognosy, College of Pharmacy, Dankook University , Cheonan 31116, Republic of Korea
| | - Eun-Kyoung Seo
- College of Pharmacy, Ewha Womans University , Seoul 03760, Republic of Korea
| | - Shen Li
- Tianjin Key Laboratory of Molecular Drug Research, College of Pharmacy, Nankai University , Tianjin 300071, People's Republic of China
| | - Yuanqiang Guo
- Tianjin Key Laboratory of Molecular Drug Research, College of Pharmacy, Nankai University , Tianjin 300071, People's Republic of China
| | - Seung-Beom Hong
- Korean Agricultural Culture Collection, National Academy of Agricultural Science , Wanju 55365, Republic of Korea
| | - So-Young Park
- Laboratory of Pharmacognosy, College of Pharmacy, Dankook University , Cheonan 31116, Republic of Korea
| | - Dongho Lee
- Department of Biosystems and Biotechnology, College of Life Sciences and Biotechnology, Korea University , Seoul 02841, Republic of Korea
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14
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Monari M, Montroni E, Nitti A, Lombardo M, Trombini C, Quintavalla A. Highly stereoselective [4+2] and [3+2] spiroannulations of 2-(2-oxoindolin-3-ylidene)acetic esters catalyzed by bifunctional thioureas. Chemistry 2015; 21:11038-49. [PMID: 26032428 DOI: 10.1002/chem.201500676] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2015] [Indexed: 11/11/2022]
Abstract
A new Michael-Michael cascade reaction between 2-(2-oxoindolin-3-ylidene)acetic esters 1 and nitroenoates 2, catalyzed by bifunctional thioureas, is investigated. The combination of the two Michael reactions results in a novel and facile [4+2] or [3+2] spiroannulation process, which is characterized by the following features: 1) two carbon-carbon bonds and four stereocenters, including a quaternary spiro carbon, are formed under mild conditions; 2) an unprecedented and stereochemically defined substitution pattern on the spirocarbocyclic unit is obtained; 3) the double-bond configuration of the donor-acceptor nitroenoate 2 determines the absolute configuration of the spiro center, whereas the remaining stereocenters are formed under control of the catalyst. The effect on the final stereochemical outcome of structural variations of each starting material, catalyst, and experimental conditions is analyzed in detail. In particular, the use of specifically designed chiral nitroenoates enables diverse polyfunctional spirocyclohexane derivatives containing six consecutive stereogenic centers to be constructed. To our knowledge, this is the first asymmetric organocatalytic strategy enabling both five- and six-membered β-nitro spirocarbocyclic oxindoles.
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Affiliation(s)
- Magda Monari
- Alma Mater Studiorum, University of Bologna, Via Selmi 2, 40126 Bologna (Italy)
| | - Elisa Montroni
- Alma Mater Studiorum, University of Bologna, Via Selmi 2, 40126 Bologna (Italy)
| | - Andrea Nitti
- Alma Mater Studiorum, University of Bologna, Via Selmi 2, 40126 Bologna (Italy)
| | - Marco Lombardo
- Alma Mater Studiorum, University of Bologna, Via Selmi 2, 40126 Bologna (Italy)
| | - Claudio Trombini
- Alma Mater Studiorum, University of Bologna, Via Selmi 2, 40126 Bologna (Italy)
| | - Arianna Quintavalla
- Alma Mater Studiorum, University of Bologna, Via Selmi 2, 40126 Bologna (Italy).
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15
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Trost BM, Bringley DA, Zhang T, Cramer N. Rapid access to spirocyclic oxindole alkaloids: application of the asymmetric palladium-catalyzed [3 + 2] trimethylenemethane cycloaddition. J Am Chem Soc 2014; 135:16720-35. [PMID: 24083654 DOI: 10.1021/ja409013m] [Citation(s) in RCA: 95] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The marcfortines are complex secondary metabolites that show potent anthelmintic activity and are characterized by the presence of a bicyclo[2.2.2]diazaoctane fused to a spirooxindole. Herein, we report the synthesis of two members of this family. The synthesis of marcfortine B utilizes a carboxylative TMM cycloaddition to establish the spirocyclic core, followed by an intramolecular Michael addition and oxidative radical cyclization to access the strained bicyclic ring system. In addition, the first asymmetric synthesis of (−)-marcfortine C is described. The key step involves a cyano-substituted TMM cycloaddition, which proceeds in nearly quantitative yield with high diastereo- and enantioselectivity. The resulting chiral center was used to establish all remaining stereocenters in the natural product.
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16
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17
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Baek J, Kang SY, Im C, Park YS. Asymmetric Synthesis of 3,4,6-Trisubstituted 2,5-Diketopiperazines by Using Dynamic Kinetic Resolution of α-Bromo Tertiary Acetamides. European J Org Chem 2014. [DOI: 10.1002/ejoc.201301936] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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18
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McCormack MP, Waters SP. Synthesis of functionalized indolizidines through Pauson-Khand cycloaddition of 2-allylpyrrolidines. J Org Chem 2013; 78:1176-83. [PMID: 23311620 DOI: 10.1021/jo302734w] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
A concise entry to functionalized indolizidine scaffolds through a domino 2-aza-Cope-[3 + 2] dipolar cycloaddition and Pauson-Khand [2 + 2 + 1] cyclization has been accomplished. The process was conducted under mild conditions to afford diverse indolizidine systems as single diastereomers in good overall yields.
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Affiliation(s)
- Michael P McCormack
- Department of Chemistry, The University of Vermont, 82 University Place, Burlington, Vermont 05405, USA
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19
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Yin B, Huang L, Zhang X, Ji F, Jiang H. Cu(II)-promoted transformations of α-thienylcarbinols into spirothienooxindoles: regioselective halogenation of dienyl sulfethers containing electron-rich aryl rings. J Org Chem 2012; 77:6365-70. [PMID: 22743129 DOI: 10.1021/jo301039y] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Under the promotion of Cu(II) salts, the α-thienylcarbinols with an N-phenyl carbonyl group at the other α-position are converted into three different ranges of spirothienooxindoles involving dearomatizing Friedel-Crafts reaction. In addition, the unprecedented regioselective CuX(2)-mediated C-H functionalization/halogenation of dienyl sulfether containing electron-rich aryl rings is presented.
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Affiliation(s)
- Biaolin Yin
- School of Chemistry and Chemical Engineering, South China University of Technology, Guangzhou, Guangdong, 510640, China.
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20
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Schuller JM, Zocher G, Liebhold M, Xie X, Stahl M, Li SM, Stehle T. Structure and catalytic mechanism of a cyclic dipeptide prenyltransferase with broad substrate promiscuity. J Mol Biol 2012; 422:87-99. [PMID: 22683356 DOI: 10.1016/j.jmb.2012.05.033] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2012] [Revised: 05/11/2012] [Accepted: 05/13/2012] [Indexed: 11/30/2022]
Abstract
Fungal indole prenyltransferases (PTs) typically act on specific substrates, and they are able to prenylate their target compounds with remarkably high regio- and stereoselectivity. Similar to several indole PTs characterized to date, the cyclic dipeptide N-prenyltransferase (CdpNPT) is able to prenylate a range of diverse substrates, thus exhibiting an unusually broad substrate promiscuity. To define the structural basis for this promiscuity, we have determined crystal structures of unliganded CdpNPT and of a ternary complex of CdpNPT bound to (S)-benzodiazepinedione and thiolodiphosphate. Analysis of the structures reveals a limited number of specific interactions with (S)-benzodiazepinedione, which projects into a largely hydrophobic surface. This surface can also accommodate other substrates, explaining the ability of the enzyme to prenylate a range of compounds. The location of the bound substrates suggests a likely reaction mechanism for the conversion of (S)-benzodiazepinedione. Structure-guided mutagenesis experiments confirm that, in addition to (S)-benzodiazepinedione, CdpNPT can also act on (R)-benzodiazepinedione and several cyclic dipeptides, albeit with relaxed specificity. Finally, nuclear magnetic resonance spectroscopy demonstrates that CdpNPT is a C-3 reverse PT that catalyzes the formation of C-3β prenylated indolines from diketopiperazines of tryptophan-containing cyclic dipeptides.
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Affiliation(s)
- Jan Michael Schuller
- Interfakultäres Institut für Biochemie, Universität Tübingen, Hoppe-Seyler-Str. 4, 72076 Tübingen, Germany
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21
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Finefield JM, Frisvad JC, Sherman DH, Williams RM. Fungal origins of the bicyclo[2.2.2]diazaoctane ring system of prenylated indole alkaloids. JOURNAL OF NATURAL PRODUCTS 2012; 75:812-33. [PMID: 22502590 PMCID: PMC3485739 DOI: 10.1021/np200954v] [Citation(s) in RCA: 110] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Over eight different families of natural products consisting of nearly 70 secondary metabolites that contain the bicyclo[2.2.2]diazaoctane ring system have been isolated from various Aspergillus, Penicillium, and Malbranchea species. Since 1968, these secondary metabolites have been the focus of numerous biogenetic, synthetic, taxonomic, and biological studies and, as such, have made a lasting impact across multiple scientific disciplines. This review covers the isolation, biosynthesis, and biological activity of these unique secondary metabolites containing the bridging bicyclo[2.2.2]diazaoctane ring system. Furthermore, the diverse fungal origin of these natural products is closely examined and, in many cases, updated to reflect the currently accepted fungal taxonomy.
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Affiliation(s)
- Jennifer M Finefield
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, USA
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22
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Dandia A, Bhati DS, Jain AK, Sharma GN. Ultrasound promoted clay catalyzed efficient and one pot synthesis of substituted oxindoles. ULTRASONICS SONOCHEMISTRY 2011; 18:1143-1147. [PMID: 21504851 DOI: 10.1016/j.ultsonch.2011.03.023] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2010] [Revised: 03/18/2011] [Accepted: 03/18/2011] [Indexed: 05/30/2023]
Abstract
A simple facile, one-pot synthesis of oxindoles in reasonable purity is reported via intramolecular Friedal-Craft cyclization. Clay KSF is an inexpensive, efficient and mild catalyst for the synthesis of substituted oxindoles by the reaction of chloroacetyl chloride and various anilines under the influence of ultrasonic irradiation under solvent-free conditions. The remarkable advantages of this method are the simple experimental procedures, short reaction times, high yields of products, suitability for a wide variety of substituents, and the green aspects through the avoidance of toxic catalyst and solvents.
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Affiliation(s)
- A Dandia
- Centre of Advanced Studies, Department of Chemistry, University of Rajasthan, Jaipur, India.
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23
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Zhou YQ, Wang NX, Zhou SB, Huang Z, Cao L. [4 + 3] Cycloaddition of Aromatic α,β-Unsaturated Aldehydes and Ketones with Epoxides: One-Step Approach to Synthesize Seven-Membered Oxacycles Catalyzed by Lewis Acid. J Org Chem 2010; 76:669-72. [DOI: 10.1021/jo101669t] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yu-Qiang Zhou
- Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Beijing, China, 100190
| | - Nai-Xing Wang
- Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Beijing, China, 100190
| | - Shu-Bao Zhou
- Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Beijing, China, 100190
- College of Chemistry and Chemical Engineering, Xinjiang University, Urumqi, China, 830046
| | - Zhong Huang
- Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Beijing, China, 100190
| | - Linghua Cao
- College of Chemistry and Chemical Engineering, Xinjiang University, Urumqi, China, 830046
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24
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Aree T, Antia BS, Ekpa OD, Kittakoop P. Paraherquamide e. Acta Crystallogr Sect E Struct Rep Online 2010; 66:o2227. [PMID: 21588597 PMCID: PMC3008018 DOI: 10.1107/s1600536810030795] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2010] [Accepted: 08/02/2010] [Indexed: 11/10/2022]
Abstract
In the title compound, C(28)H(35)N(3)O(4), also known as 14-de-oxy-paraherquamide A,the two pyrrolidine rings adopt envelope conformations. The piperazine ring of the diaza-bicyclo-[2.2.2]octan-3-one unit adopts a boat conformation whereas the two piperidine rings are in distorted boat conformations. Intra-molecular C-H⋯O hydrogen bonds are observed. In the crystal, the mol-ecules are linked into chains along the b axis by inter-molecular N-H⋯O hydrogen bonds.
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25
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Bogle KM, Hirst DJ, Dixon DJ. An oxidative coupling for the synthesis of arylated quaternary stereocentres and its application in the total synthesis of powelline and buphanidrine. Tetrahedron 2010. [DOI: 10.1016/j.tet.2010.04.132] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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26
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Davis RA, Carroll AR, Andrews KT, Boyle GM, Tran TL, Healy PC, Kalaitzis JA, Shivas RG. Pestalactams A-C: novel caprolactams from the endophytic fungus Pestalotiopsis sp. Org Biomol Chem 2010; 8:1785-90. [PMID: 20449480 DOI: 10.1039/b924169h] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Chemical investigations of a fermentation culture from the endophytic fungus Pestalotiopsis sp. yielded three novel caprolactams, pestalactams A-C (). The structures of were determined by analysis of 1D and 2D-NMR, UV, IR, and MS data. The structure of pestalactam A was confirmed following single crystal X-ray diffraction analysis. Pestalactams A-C are the first C-7 alkylated caprolactam natural products to be reported. Pestalactams A () and B () were tested against two different strains of the malaria parasite Plasmodium falciparum (3D7 and Dd2), and the mammalian cell lines, MCF-7 and NFF, and showed modest in vitro activity in all assays.
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Affiliation(s)
- Rohan A Davis
- Eskitis Institute, Griffith University, Brisbane, QLD 4111, Australia.
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27
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Studies on Paraherquamide Biosynthesis: Synthesis of Deuterium-Labeled 7-Hydroxy-Pre-Paraherquamide, a Putative Precursor of Paraherquamides A, E & F. Tetrahedron 2009; 65:3246-3260. [PMID: 20161298 DOI: 10.1016/j.tet.2008.08.102] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The stereocontrolled, asymmetric synthesis of triply deuterium-labeled 7-hydroxy-pre-paraherquamide (27) was accomplished, employing a diastereoselective intramolecular S(N)2' cyclization strategy. The deuterium-labeled substrate was interrogated in a precursor incorporation experiment in the paraherquamide-producing organism Penicillium fellutanum. The isolated sample of paraherquamide A revealed incorporation of one of the two geminal deuterons of the CD(2)-group at C-12 exclusively. The lack of signals for the second deuteron of the CD(2)-group at C-12 and for the CH(2)D-group (C-22/C-23) suggests that this substrate suffered an unexpectedly selective catabolic degradation and metabolic re-incorporation of deuterium thus casting doubt on the proposed biosynthetic intermediacy of 27. Consideration of alternative biosynthetic pathways, including oxidation of the indole C-6 position prior to hydroxylation at C-7 or oxidative spiro-contraction of pre-paraherquamide prior to construction of the dioxepin is discussed. The synthesis of 27 also provides for a concise, asymmetric stereocontrolled synthesis of an advanced intermediate that will be potentially useful in the synthesis of paraherquamide E & F.
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28
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Developing Aspergillus as a host for heterologous expression. Biotechnol Adv 2009; 27:53-75. [DOI: 10.1016/j.biotechadv.2008.09.001] [Citation(s) in RCA: 204] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2008] [Revised: 09/04/2008] [Accepted: 09/07/2008] [Indexed: 12/11/2022]
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29
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Sommer K, Williams RM. Studies Towards Paraherquamides E & F and Related C-labeled Putative Biosynthetic Intermediates: Stereocontrolled Synthesis of the α-Alkyl-β-Methylproline Ring System. Tetrahedron 2008; 64:7106-7111. [PMID: 20336192 DOI: 10.1016/j.tet.2008.05.068] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
A substituted 2R-allyl-3S-methylproline ethyl ester suitable for elaboration to paraherquamides E, F and related (13)C-labelled putative biosynthesis intermediates have been prepared efficiently in six steps and 24% overall yield. The key steps are a 5-exo-trig cyclization of a zinc enolate on an unactivated alkene and a stereocontrolled alkylation of the enolate formed from 3S-methyl-pyrrolidine-1,2R-dicarboxylic acid 1-tert-butyl ester 2-ethyl ester.
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Affiliation(s)
- Konrad Sommer
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523
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30
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Davis RA, Longden J, Avery VM, Healy PC. The isolation, structure determination and cytotoxicity of the new fungal metabolite, trichodermamide C. Bioorg Med Chem Lett 2008; 18:2836-9. [DOI: 10.1016/j.bmcl.2008.03.090] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2008] [Revised: 03/27/2008] [Accepted: 03/31/2008] [Indexed: 11/16/2022]
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31
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Pichowicz M, Simpkins NS, Blake AJ, Wilson C. Studies towards complex bridged alkaloids: regio- and stereocontrolled enolate chemistry of 2,5-diketopiperazines. Tetrahedron 2008. [DOI: 10.1016/j.tet.2008.02.020] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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32
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Chrysogenamide A from an Endophytic Fungus Associated with Cistanche deserticola and Its Neuroprotective Effect on SH-SY5Y Cells. J Antibiot (Tokyo) 2008; 61:81-5. [DOI: 10.1038/ja.2008.114] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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33
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Bogle KM, Hirst DJ, Dixon DJ. An Organocatalytic Oxidative Coupling Strategy for the Direct Synthesis of Arylated Quaternary Stereogenic Centers. Org Lett 2007; 9:4901-4. [DOI: 10.1021/ol702277v] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Katherine M. Bogle
- School of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, UK, and GlaxoSmithKline, New Frontiers Science Park, Third Avenue, Harlow, Essex CM19 5AW, UK
| | - David J. Hirst
- School of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, UK, and GlaxoSmithKline, New Frontiers Science Park, Third Avenue, Harlow, Essex CM19 5AW, UK
| | - Darren J. Dixon
- School of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, UK, and GlaxoSmithKline, New Frontiers Science Park, Third Avenue, Harlow, Essex CM19 5AW, UK
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34
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Syntheses of spiro[cyclopropane-1,3′-oxindole]-2-carboxylic acid and cyclopropa[c]quinoline-7b-carboxylic acid and their derivatives. Tetrahedron 2007. [DOI: 10.1016/j.tet.2006.11.051] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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