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Yang T, Chen S, Qiu L, Guo Q, Wang Z, Jiang Y, Bai H, Bi Y, Chang G. Effect of High Dietary Iron on Fat Deposition and Gut Microbiota in Chickens. Animals (Basel) 2024; 14:2254. [PMID: 39123780 PMCID: PMC11310990 DOI: 10.3390/ani14152254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2024] [Revised: 07/30/2024] [Accepted: 08/02/2024] [Indexed: 08/12/2024] Open
Abstract
To meet the demand of consumers for chicken products, poultry breeders have made improvements to chickens. However, this has led to a new problem in the modern poultry industry, namely excessive fat deposition. This study aims to understand the effects of dietary iron supplementation on fat deposition and gut microbiota in chickens. In this study, we investigated the effects of iron on the growth performance, fat deposition, and gut microbiota of silky fowl black-bone chickens. A total of 75 7-week-old silky fowl black-bone chickens were randomly divided into three groups (five replicates per group, five chickens per replicate) and fed them for 28 days using a growing diet (control group), a growing diet + 10% tallow (high-fat diet group, HFD group), and a growing diet + 10% tallow + 500 mg/kg iron (HFDFe500 group), respectively. We detected the effects of iron on the growth performance, fat deposition, and gut microbiota of silky fowl black-bone chickens using the growth performance index test, oil red O staining, and HE staining, and found that the high-fat diet significantly increased liver and serum fat deposition and liver injury, while the addition of iron to the diet could reduce the fat deposition caused by the high-fat diet and alleviate liver injury. In addition, 16S rDNA sequencing was used to compare the relative abundance of gut microbiota in the cecal contents in different feeding groups. The results showed that the high-fat diet could induce gut microbiota imbalance in chickens, while the high-iron diet reversed the gut microbiota imbalance. PICRUSt functional prediction analysis showed that dietary iron supplementation affected amino acid metabolism, energy metabolism, cofactors, and vitamin metabolism pathways. In addition, correlation analysis showed that TG was significantly associated with Firmicutes and Actinobacteriota (p < 0.05). Overall, these results revealed high dietary iron (500 mg/kg) could reduce fat deposition and affect the gut microbiota of silky fowl black-bone chickens, suggesting that iron may regulate fat deposition by influencing the gut microbiota of chickens and provides a potential avenue that prevents excessive fat deposition in chickens by adding iron to the diet.
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Affiliation(s)
- Ting Yang
- College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China
- Key Laboratory for Animal Genetics & Molecular Breeding of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
| | - Shihao Chen
- College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China
- Key Laboratory for Animal Genetics & Molecular Breeding of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
| | - Lingling Qiu
- College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China
- Key Laboratory for Animal Genetics & Molecular Breeding of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
| | - Qixin Guo
- College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China
- Key Laboratory for Animal Genetics & Molecular Breeding of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
| | - Zhixiu Wang
- College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China
- Key Laboratory for Animal Genetics & Molecular Breeding of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
| | - Yong Jiang
- College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China
- Key Laboratory for Animal Genetics & Molecular Breeding of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
| | - Hao Bai
- Institutes of Agricultural Science and Technology Development, Yangzhou University, Yangzhou 225009, China
- Joint International Research Laboratory of Agriculture and Agri-Product Safety of Ministry of Education of China, Yangzhou University, Yangzhou 225009, China
| | - Yulin Bi
- College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China
- Key Laboratory for Animal Genetics & Molecular Breeding of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
| | - Guobin Chang
- College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China
- Key Laboratory for Animal Genetics & Molecular Breeding of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
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Xin X, Li P, Zhao X, Yu Y, Wang W, Jin G, Wang J, Sun L, Zhang D, Zhang F, Yu S, Su T. Temperature-dependent jumonji demethylase modulates flowering time by targeting H3K36me2/3 in Brassica rapa. Nat Commun 2024; 15:5470. [PMID: 38937441 PMCID: PMC11211497 DOI: 10.1038/s41467-024-49721-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2023] [Accepted: 06/12/2024] [Indexed: 06/29/2024] Open
Abstract
Global warming has a severe impact on the flowering time and yield of crops. Histone modifications have been well-documented for their roles in enabling plant plasticity in ambient temperature. However, the factor modulating histone modifications and their involvement in habitat adaptation have remained elusive. In this study, through genome-wide pattern analysis and quantitative-trait-locus (QTL) mapping, we reveal that BrJMJ18 is a candidate gene for a QTL regulating thermotolerance in thermotolerant B. rapa subsp. chinensis var. parachinensis (or Caixin, abbreviated to Par). BrJMJ18 encodes an H3K36me2/3 Jumonji demethylase that remodels H3K36 methylation across the genome. We demonstrate that the BrJMJ18 allele from Par (BrJMJ18Par) influences flowering time and plant growth in a temperature-dependent manner via characterizing overexpression and CRISPR/Cas9 mutant plants. We further show that overexpression of BrJMJ18Par can modulate the expression of BrFLC3, one of the five BrFLC orthologs. Furthermore, ChIP-seq and transcriptome data reveal that BrJMJ18Par can regulate chlorophyll biosynthesis under high temperatures. We also demonstrate that three amino acid mutations may account for function differences in BrJMJ18 between subspecies. Based on these findings, we propose a working model in which an H3K36me2/3 demethylase, while not affecting agronomic traits under normal conditions, can enhance resilience under heat stress in Brassica rapa.
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Affiliation(s)
- Xiaoyun Xin
- State Key Laboratory of Vegetable Biobreeding, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China
- National Engineering Research Center for Vegetables, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China
- Beijing Key Laboratory of Vegetable Germplasms Improvement, Beijing, China
- Key Laboratory of Biology and Genetics Improvement of Horticultural Crops (North China), Beijing, China
| | - Peirong Li
- State Key Laboratory of Vegetable Biobreeding, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China
- National Engineering Research Center for Vegetables, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China
- Beijing Key Laboratory of Vegetable Germplasms Improvement, Beijing, China
- Key Laboratory of Biology and Genetics Improvement of Horticultural Crops (North China), Beijing, China
| | - Xiuyun Zhao
- State Key Laboratory of Vegetable Biobreeding, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China
- National Engineering Research Center for Vegetables, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China
- Beijing Key Laboratory of Vegetable Germplasms Improvement, Beijing, China
- Key Laboratory of Biology and Genetics Improvement of Horticultural Crops (North China), Beijing, China
| | - Yangjun Yu
- State Key Laboratory of Vegetable Biobreeding, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China
- National Engineering Research Center for Vegetables, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China
- Beijing Key Laboratory of Vegetable Germplasms Improvement, Beijing, China
- Key Laboratory of Biology and Genetics Improvement of Horticultural Crops (North China), Beijing, China
| | - Weihong Wang
- State Key Laboratory of Vegetable Biobreeding, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China
- National Engineering Research Center for Vegetables, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China
- Beijing Key Laboratory of Vegetable Germplasms Improvement, Beijing, China
- Key Laboratory of Biology and Genetics Improvement of Horticultural Crops (North China), Beijing, China
| | - Guihua Jin
- State Key Laboratory of Vegetable Biobreeding, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China
- National Engineering Research Center for Vegetables, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China
| | - Jiao Wang
- State Key Laboratory of Vegetable Biobreeding, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China
- National Engineering Research Center for Vegetables, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China
| | - Liling Sun
- State Key Laboratory of Vegetable Biobreeding, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China
- National Engineering Research Center for Vegetables, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China
| | - Deshuang Zhang
- State Key Laboratory of Vegetable Biobreeding, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China
- National Engineering Research Center for Vegetables, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China
- Beijing Key Laboratory of Vegetable Germplasms Improvement, Beijing, China
- Key Laboratory of Biology and Genetics Improvement of Horticultural Crops (North China), Beijing, China
| | - Fenglan Zhang
- State Key Laboratory of Vegetable Biobreeding, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China.
- National Engineering Research Center for Vegetables, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China.
- Beijing Key Laboratory of Vegetable Germplasms Improvement, Beijing, China.
- Key Laboratory of Biology and Genetics Improvement of Horticultural Crops (North China), Beijing, China.
| | - Shuancang Yu
- State Key Laboratory of Vegetable Biobreeding, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China.
- National Engineering Research Center for Vegetables, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China.
- Beijing Key Laboratory of Vegetable Germplasms Improvement, Beijing, China.
- Key Laboratory of Biology and Genetics Improvement of Horticultural Crops (North China), Beijing, China.
| | - Tongbing Su
- State Key Laboratory of Vegetable Biobreeding, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China.
- National Engineering Research Center for Vegetables, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing, China.
- Beijing Key Laboratory of Vegetable Germplasms Improvement, Beijing, China.
- Key Laboratory of Biology and Genetics Improvement of Horticultural Crops (North China), Beijing, China.
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Bai H, Shi L, Guo Q, Jiang Y, Li X, Geng D, Wang C, Bi Y, Wang Z, Chen G, Xue F, Chang G. Metagenomic insights into the relationship between gut microbiota and residual feed intake of small-sized meat ducks. Front Microbiol 2023; 13:1075610. [PMID: 36741899 PMCID: PMC9889972 DOI: 10.3389/fmicb.2022.1075610] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Accepted: 12/23/2022] [Indexed: 01/19/2023] Open
Abstract
Introduction The objective of this study was to determine the regulatory effects of gut microbiota on the feed efficiency (FE) of small-sized meat ducks by evaluating correlations between gut microbiota and residual feed intake (RFI). Methods A total of 500 21-day-old healthy male ducks with similar initial body weights (645 ± 15.0 g) were raised contemporaneously in the same experimental facility until slaughter at 56 days of age. In total, nine low-RFI (LR) and nine high-RFI (HR) birds were selected for further gut microbiota composition and functional analyses based on the production performance, and the RFI was calculated from 22 to 56 days of age. Results Growth performance results indicated a significantly lower RFI, feed conversion ratio, feed intake, and average daily feed intake in the LR ducks (P < 0.05). Taxonomy results of gut microbiota showed the identification of 19 kinds of phyla and more than 250 kinds of genera in all samples. No significant discrepancies in cecal bacterial α-diversity were discovered between the LR and HR groups, which indicated that the microbial modulatory effects on RFI may be attributed to the bacterial composition, rather than the species diversity. Differential analysis of bacterial communities between the LR and HR groups showed a significant increment of Firmicutes and a significant decline of Bacteroidetes in the LR group (P < 0.05). Specifically, genera of Erysipelatoclostridium, Parasutterella, Fournierella, and Lactococcus significantly proliferated, while Bacteroides significantly decreased in the LR group (P < 0.05). Furthermore, correlation analysis showed that the RFI was significantly correlated with carbohydrate metabolism-related bacteria including Bacteroides, Alistipes, Bifidobacterium, Ruminiclostridium_9, Sellimonas, Oscillibacter, Escherichia-Shigella, Lactococcus, and Streptococcus. Conclusion In conclusion, the communities related to carbohydrate metabolism had positive regulatory effects on the FE of small-sized meat ducks, promoting it by improving the relative abundance and utilization of these communities. The present study provides valuable insight into the dynamics of gut microbiota underlying the variations in the FE of small-sized meat ducks.
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Affiliation(s)
- Hao Bai
- Joint International Research Laboratory of Agriculture and Agri-Product Safety, The Ministry of Education of China, Yangzhou University, Yangzhou, China
| | - Lei Shi
- College of Animal Science and Technology, Hebei Agricultural University, Baoding, China
| | - Qixin Guo
- Joint International Research Laboratory of Agriculture and Agri-Product Safety, The Ministry of Education of China, Yangzhou University, Yangzhou, China
| | - Yong Jiang
- Joint International Research Laboratory of Agriculture and Agri-Product Safety, The Ministry of Education of China, Yangzhou University, Yangzhou, China
| | - Xiaofan Li
- Joint International Research Laboratory of Agriculture and Agri-Product Safety, The Ministry of Education of China, Yangzhou University, Yangzhou, China
| | - Dandan Geng
- Joint International Research Laboratory of Agriculture and Agri-Product Safety, The Ministry of Education of China, Yangzhou University, Yangzhou, China
| | - Chenxiao Wang
- Joint International Research Laboratory of Agriculture and Agri-Product Safety, The Ministry of Education of China, Yangzhou University, Yangzhou, China
| | - Yulin Bi
- Joint International Research Laboratory of Agriculture and Agri-Product Safety, The Ministry of Education of China, Yangzhou University, Yangzhou, China
| | - Zhixiu Wang
- Joint International Research Laboratory of Agriculture and Agri-Product Safety, The Ministry of Education of China, Yangzhou University, Yangzhou, China
| | - Guohong Chen
- Joint International Research Laboratory of Agriculture and Agri-Product Safety, The Ministry of Education of China, Yangzhou University, Yangzhou, China
| | - Fuguang Xue
- Nanchang Key Laboratory of Animal Health and Safety Production, Jiangxi Agricultural University, Nanchang, China,*Correspondence: Fuguang Xue ✉
| | - Guobin Chang
- Joint International Research Laboratory of Agriculture and Agri-Product Safety, The Ministry of Education of China, Yangzhou University, Yangzhou, China,Guobin Chang ✉
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Liang X, Wang R, Luo H, Liao Y, Chen X, Xiao X, Li L. The interplay between the gut microbiota and metabolism during the third trimester of pregnancy. Front Microbiol 2022; 13:1059227. [PMID: 36569048 PMCID: PMC9768424 DOI: 10.3389/fmicb.2022.1059227] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2022] [Accepted: 11/18/2022] [Indexed: 12/12/2022] Open
Abstract
The gut microbiota undergoes dynamic changes during pregnancy. The gut microbial and metabolic networks observed in pregnant women have not been systematically analyzed. The primary purpose of this study was to explore the alterations in the gut microbiota and metabolism during late pregnancy and investigate the associations between the gut microbiota and metabolism. A total of thirty healthy pregnant women were followed from 30 to 32 weeks of gestation to full term. Fecal samples were collected for microbiome analysis and untargeted metabolomic analysis. The characteristics of the gut microbiota were evaluated by 16S ribosomal RNA gene sequencing of the V3-V4 regions. The plasma samples were used for untargeted metabolomic analysis with liquid chromatography-tandem mass spectrometry. The interplay between the gut microbiota and metabolism was analyzed further by bioinformatics approaches. We found that the relative abundances of Sellimonas and Megamonas were higher at full term, whereas that of Proteobacteria was lower. The correlation network of the gut microbiota tended to exhibit weaker connections from 32 weeks of gestation to the antepartum timepoint. Changes in the gut microbiota during late pregnancy were correlated with the absorbance and metabolism of microbiota-associated metabolites, such as fatty acids and free amino acids, thereby generating a unique metabolic system for the growth of the fetus. Decreasing the concentration of specific metabolites in plasma and increasing the levels of palmitic acid and 20-hydroxyarachidonic acid may enhance the transformation of a proinflammatory immune state as pregnancy progresses.
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Affiliation(s)
- Xinyuan Liang
- Department of Obstetrics, The Second Clinical Medical College, Jinan University (Shenzhen People’s Hospital), Shenzhen, China,The First Affiliated Hospital, Jinan University, Guangzhou, China
| | - Rongning Wang
- Department of Obstetrics, The Second Clinical Medical College, Jinan University (Shenzhen People’s Hospital), Shenzhen, China
| | - Huijuan Luo
- Department of Obstetrics and Gynecology, The First Affiliated Hospital, Jinan University, Guangzhou, China
| | - Yihong Liao
- Department of Obstetrics, The Second Clinical Medical College, Jinan University (Shenzhen People’s Hospital), Shenzhen, China
| | - Xiaowen Chen
- Department of Obstetrics, The Second Clinical Medical College, Jinan University (Shenzhen People’s Hospital), Shenzhen, China
| | - Xiaomin Xiao
- Department of Obstetrics and Gynecology, The First Affiliated Hospital, Jinan University, Guangzhou, China,*Correspondence: Xiaomin Xiao,
| | - Liping Li
- Department of Obstetrics, The Second Clinical Medical College, Jinan University (Shenzhen People’s Hospital), Shenzhen, China,Liping Li,
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The suitability of using spectrophotometry to determine the concentration and purity of DNA extracted from processed food matrices. J Food Compost Anal 2022. [DOI: 10.1016/j.jfca.2022.104689] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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6
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Rapid and visual detection of viable Staphylococcus aureus in pork and pork products by PMA and saltatory rolling circle amplification. Eur Food Res Technol 2022. [DOI: 10.1007/s00217-022-03990-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Du Y, Chen F, Bu G, Zhang L. Distribution and degradation of DNA from non-genetically and genetically modified soybean (Roundup Ready): Impact of soybean protein concentrate and soybean protein isolate preparation. Food Chem 2021; 335:127582. [PMID: 32739806 DOI: 10.1016/j.foodchem.2020.127582] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2019] [Revised: 07/08/2020] [Accepted: 07/12/2020] [Indexed: 01/04/2023]
Abstract
To improve genetically modified product labelling legislation and promote the development of genetically modified foods, the mass variations of genomic DNA and length distributions of DNA fragments in non-genetically and genetically modified soybean (Roundup Ready) and the variations in transgenic contents during soybean protein concentrate (SPC) and soybean protein isolate (SPI) preparation were monitored. The material masses throughout the process conformed to the law of mass conservation, and amounts of DNA recovered decreased with SPC and SPI preparation. The successive steps of ethanol extraction led to a decrease in the size distribution of the recovered DNA. For the LECTIN and CP4 EPSPS targets investigated, longer fragments (>800 bp) were more affected than smaller fragments (<200 bp), and both targets degraded slowly upon degradation into small fragments. DNA distribution and degradation thereby affected GMO quantification. After preparation procedures, the transgenic contents of SPC and SPI products were higher than that of raw soybean.
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Affiliation(s)
- Yan Du
- College of Food Science and Technology, Henan University of Technology, Zhengzhou, 450001 Henan, China.
| | - Fusheng Chen
- College of Food Science and Technology, Henan University of Technology, Zhengzhou, 450001 Henan, China.
| | - Guanhao Bu
- College of Food Science and Technology, Henan University of Technology, Zhengzhou, 450001 Henan, China
| | - Lifen Zhang
- College of Food Science and Technology, Henan University of Technology, Zhengzhou, 450001 Henan, China
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Sun DD, Sun JW, Huang LY, Chen N, Wang QW. Effects of cadmium stress on DNA methylation in soybean. BIOTECHNOL BIOTEC EQ 2021. [DOI: 10.1080/13102818.2021.1980107] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022] Open
Affiliation(s)
- Dan-Dan Sun
- Provincial Key Laboratory of Molecular Genetics and Genetic Breeding, College of Science and Technology, Harbin Normal University, Harbin, Heilongjiang, PR China
| | | | - Li-Yuan Huang
- Provincial Key Laboratory of Molecular Genetics and Genetic Breeding, College of Science and Technology, Harbin Normal University, Harbin, Heilongjiang, PR China
| | - Nan Chen
- Provincial Key Laboratory of Molecular Genetics and Genetic Breeding, College of Science and Technology, Harbin Normal University, Harbin, Heilongjiang, PR China
| | - Quan-Wei Wang
- Provincial Key Laboratory of Molecular Genetics and Genetic Breeding, College of Science and Technology, Harbin Normal University, Harbin, Heilongjiang, PR China
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Ashrafi-Dehkordi E, Mazloomi SM, Hemmati F. A comparison of DNA extraction methods and PCR-based detection of GMO in textured soy protein. J Verbrauch Lebensm 2020. [DOI: 10.1007/s00003-020-01300-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Ying S, Kong X, Cai Z, Man Z, Xin Y, Liu D. Interactions and microbial variations in a biotrickling filter treating low concentrations of hydrogen sulfide and ammonia. CHEMOSPHERE 2020; 255:126931. [PMID: 32402879 DOI: 10.1016/j.chemosphere.2020.126931] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2019] [Revised: 03/18/2020] [Accepted: 04/27/2020] [Indexed: 06/11/2023]
Abstract
A lab-scale biotrickling filter (BTF) packed with porcelain Rasching ring and ceramsite was applied for co-treating of low concentrations of hydrogen sulfide (H2S) and ammonia (NH3), as major pollutants typically found in e.g., intensive livestock production facilities. In this study, the outlet gas concentrations of H2S and NH3 were used for indicators if the treated gas reached odor-free condition. Overall, excellent removal efficiencies were obtained for both H2S and NH3 in the BTF during Stage I (H2S alone) and Stage II (H2S and NH3). Specifically, the H2S outlet concentration was below the detection limit (∼3.6 ppbv) and the NH3 outlet concentration was less than 0.4 ppmv when the inlet concentrations of H2S and NH3 were around 1.8 ppmv and 35.3 ppmv, respectively. In this case, the running empty bed residence time was 10.2 s. During Stage II, the outlet H2S concentration was decreased significantly when the inlet NH3 concentration was increased, likely due to the influence by pH. Meanwhile, the outlet nitrous oxide (N2O) concentration was kept low (<2% NH3) during the experiment, suggesting a proper operation of the BTF. After the inlet gas shifted from H2S alone at Stage I to H2S and NH3 at Stage II, the main sulfur-oxidizing bacteria (SOB) species in the BTF switched from Acidithiobacillus to Thiobacillus.
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Affiliation(s)
- Shihao Ying
- Institute of Agricultural Bio-Environmental Engineering, College of Biosystems Engineering and Food Science, Zhejiang University, China
| | - Xianwang Kong
- Institute of Agricultural Bio-Environmental Engineering, College of Biosystems Engineering and Food Science, Zhejiang University, China
| | - Zhen Cai
- Institute of Agricultural Bio-Environmental Engineering, College of Biosystems Engineering and Food Science, Zhejiang University, China
| | - Zun Man
- Institute of Agricultural Bio-Environmental Engineering, College of Biosystems Engineering and Food Science, Zhejiang University, China
| | - Yicong Xin
- Institute of Agricultural Bio-Environmental Engineering, College of Biosystems Engineering and Food Science, Zhejiang University, China
| | - Dezhao Liu
- Institute of Agricultural Bio-Environmental Engineering, College of Biosystems Engineering and Food Science, Zhejiang University, China.
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Cao X, Xia Z, Yan W, He S, Xu X, Wei Z, Ye Y, Zheng H. Colorimetric biosensing of nopaline synthase terminator using Fe 3O 4@Au and hemin-functionalized reduced graphene oxide. Anal Biochem 2020; 602:113798. [PMID: 32505706 DOI: 10.1016/j.ab.2020.113798] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2020] [Revised: 05/23/2020] [Accepted: 05/25/2020] [Indexed: 12/16/2022]
Abstract
In this paper, we present a simple and label-free colorimetric biosensor for detection of the nopaline synthase (NOS) terminator in genetically modified (GM) plants. The "signal on" colorimetric biosensor was developed using a nanocomposite consisted of gold nanoparticles doped magnetic Fe3O4 nanoparticles (Fe3O4@Au NP), capture probe DNA (cDNA), and hemin-functionalized reduced graphene oxide nanosheets (H-GN). The nanocomposite was successfully prepared by means of Au-S bonds and the strong π interactions between cDNA and H-GN. The sensing approach is based on the excellent peroxidase-mimicking activity of H-GN and its different electrostatic interactions with single-stranded DNA (ssDNA) and double-stranded DNA (dsDNA). In presence of the target NOS, the cDNA in the nanocomposite will hybridize with its complementary sequence, and form dsDNA structure. Due to the weak π interactions between dsDNA and H-GN, a portion of H-GN will be released from the surface of Fe3O4@Au NPs and transferred into solution. After magnetic separation was performed, the supernatant was incubated with 3,3',5,5'-tetramethylbenzidine (TMB) in the presence of H2O2. The released H-GN can catalyze the oxidation reaction of TMB and turn the colorless solution blue. This "signal-on" colorimetric biosensor shows a broad linear range of 0.5-100 nM for the target NOS, with a 0.19 nM detection limit. The application of the biosensor for determination of NOS segments in samples of GM and non-GM tomatoes shows that it can discriminate between GM and non-GM plants. The reliability of the method for samples of NOS-spiked GM tomato suggests satisfactory recoveries in the range of 93.6%-94.2%.
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Affiliation(s)
- Xiaodong Cao
- School of Food Science and Biological Engineering, Hefei University of Technology, Hefei, 230009, China
| | - Zihao Xia
- School of Food Science and Biological Engineering, Hefei University of Technology, Hefei, 230009, China
| | - Wuwen Yan
- School of Food Science and Biological Engineering, Hefei University of Technology, Hefei, 230009, China
| | - Shudong He
- School of Food Science and Biological Engineering, Hefei University of Technology, Hefei, 230009, China
| | - Xuan Xu
- College of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing, 211816, China
| | - Zhaojun Wei
- School of Food Science and Biological Engineering, Hefei University of Technology, Hefei, 230009, China
| | - Yongkang Ye
- School of Food Science and Biological Engineering, Hefei University of Technology, Hefei, 230009, China.
| | - Haisong Zheng
- Technology Center of Hefei Customs, Hefei, 230032, China
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Yuan N, Zhang Y, Xu H, Zhou Z, Lu X, Chen T, Yang Q, Tan J, Zhang W. Development of the Saltatory Rolling Circle Amplification Assay for Rapid and Visual Detection of Alicyclobacillus acidoterrestris in Apple Juice. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2020; 68:4538-4545. [PMID: 32208687 DOI: 10.1021/acs.jafc.0c00061] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
A novel nucleic acid isothermal amplification method based on saltatory rolling circle amplification (SRCA) for rapid and visual detection of Alicyclobacillus acidoterrestris in apple juice was established. Fourteen A. acidoterrestris strains and 44 non-A. acidoterrestris strains were used to confirm the specificity. The sensitivity of SRCA was 4.5 × 101 CFU/mL by observing the white precipitate with the naked eye, while it was 4.5 × 100 CFU/mL by fluorescence visualization. The detection limit of SRCA in artificially inoculated apple juice was 7.1 × 101 and 7.1 × 100 CFU/mL via visualization of the white precipitate and fluorescence, respectively. Compared with the traditional PCR method, SRCA exhibited at least a 100-fold higher sensitivity and 100-fold lower detection limit. Seventy samples were investigated for A. acidoterrestris contamination, and the results showed 100% sensitivity, 97.01% specificity, and 97.14% accuracy compared with those by the conventional microbiological cultivation method. Overall, this method is a potentially useful tool for visual and rapid detection of A. acidoterrestris.
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Affiliation(s)
- Ning Yuan
- College of Science and Technology, Hebei Agricultural University, Cangzhou 061100, Hebei, China
| | - Yunzhe Zhang
- College of Food Science and Technology, Hebei Agricultural University, Baoding 071001, Hebei, China
| | - Hui Xu
- College of Science and Technology, Hebei Agricultural University, Cangzhou 061100, Hebei, China
| | - Zhijun Zhou
- Teaching experiment center, Hebei Agricultural University, Baoding 071001, Hebei, China
| | - Xin Lu
- College of Science and Technology, Hebei Agricultural University, Cangzhou 061100, Hebei, China
| | - Tingting Chen
- College of Food Science and Technology, Hebei Agricultural University, Baoding 071001, Hebei, China
| | - Qian Yang
- College of Science and Technology, Hebei Agricultural University, Cangzhou 061100, Hebei, China
| | - Jianxin Tan
- College of Food Science and Technology, Hebei Agricultural University, Baoding 071001, Hebei, China
| | - Wei Zhang
- College of Science and Technology, Hebei Agricultural University, Cangzhou 061100, Hebei, China
- College of Food Science and Technology, Hebei Agricultural University, Baoding 071001, Hebei, China
- College of Life Sciences, Hebei Agricultural University, Baoding 071001, Hebei, China
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13
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A Modified SDS – Based Method Applied for Extraction of High-Quality DNA from Raw Corn and Roasted Soybean. MACEDONIAN VETERINARY REVIEW 2020. [DOI: 10.2478/macvetrev-2020-0017] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Abstract
The probability of contamination of non-transgenic varieties with genetically modified (GM) products increase as a result of global expansion of areas sown with transgenic crops. DNA-based methods as accurate, efficient and reliable methods are preferable for detection of GM material in raw or highly processed foods. Isolation of high quality DNA with a suitable and efficient DNA extraction protocol is crucial for getting precise results in DNA amplification. In this study, we performed modifications of previously known Sodium dodecyl sulfate (SDS)-based DNA extraction method regarding the incubation period, DNA pellet washing and addition of organic solvent extraction, to improve DNA quality and to reduce costs. Raw corn kernels and roasted soybean seed were used as samples. DNA was extracted following three protocols, modifications of Edwards protocol. The type of detergent used in raw corn sample did not cause significant effects on extracted DNA yield and purity, while in roasted soybean samples the 2% (w/v) SDS lysis buffer gave the highest DNA yield. The additional incubation step raised the DNA yield from raw corn for 121%, while the purest DNA from soybean sample was obtained using organic solvent extraction. Electrophoretic determination of DNA integrity showed varying degree of DNA smearing from roasted soybean. Contrary, all extraction protocols used on raw corn kernels produced a high molecular weight DNA. Thus, our in-house DNA extraction protocol is as efficient but more cost effective compared to commercial kits and can be used for raw corn, while the protocol for roasted soybean needs further improvement.
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14
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He Z, Su Y, Li S, Long P, Zhang P, Chen Z. Development and Evaluation of Isothermal Amplification Methods for Rapid Detection of Lethal Amanita Species. Front Microbiol 2019; 10:1523. [PMID: 31338080 PMCID: PMC6626908 DOI: 10.3389/fmicb.2019.01523] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2019] [Accepted: 06/18/2019] [Indexed: 12/04/2022] Open
Abstract
In the present work, loop-mediated isothermal amplification (LAMP) and hyperbranched rolling circle amplification (HRCA) methods were developed to detect and distinguish different lethal Amanita species. Specific LAMP primers and HRCA padlock probes for species-specific identification and a set of universal LAMP primers for lethal Amanita species were designed and tested. The results indicated that the LAMP-based assay was able to discriminate introclade lethal Amanita species but was not able to discriminate intraclade species perfectly, while the HRCA-based assay could discriminate whether introclade or intraclade species. The universal LAMP primers were positive for 10 lethal species of Amanita section Phalloideae and negative for 16 species of Amanita outside section Phalloideae. The detection limits of LMAP and HRCA were 10 and 1 pg of genomic DNA per reaction, respectively. In conclusion, the two methods could be rapid, specific, sensitive and low-cost tools for the identification of lethal Amanita species.
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Affiliation(s)
- Zhengmi He
- College of Life Sciences, Hunan Normal University, Changsha, China
| | - Yuting Su
- College of Life Sciences, Hunan Normal University, Changsha, China
| | - Sainan Li
- College of Life Sciences, Hunan Normal University, Changsha, China
| | - Pan Long
- College of Life Sciences, Hunan Normal University, Changsha, China
| | - Ping Zhang
- College of Life Sciences, Hunan Normal University, Changsha, China
| | - Zuohong Chen
- College of Life Sciences, Hunan Normal University, Changsha, China
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Xia Y, Chen F, Du Y, Liu C, Bu G, Xin Y, Liu B. A modified SDS-based DNA extraction method from raw soybean. Biosci Rep 2019; 39:BSR20182271. [PMID: 30647109 PMCID: PMC6361772 DOI: 10.1042/bsr20182271] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2018] [Revised: 01/11/2019] [Accepted: 01/14/2019] [Indexed: 11/26/2022] Open
Abstract
Soybean is the most important genetically modified (GM) oilseed worldwide. Regulations relating to the approval of biotech soybean varieties and product labeling demand accurate and reliable detection techniques to screen for GM soya. High-quality extracted DNA is essential for DNA-based monitoring methods. Thus, four widely used protocols (SDS, CTAB, DP305, and DNeasy Plant Mini Kit) were compared in the present study to explore the most efficient DNA extraction method for raw soya matrix. The SDS-based method showed the highest applicability. Then crucial factors influencing DNA yield and purity, such as SDS lysis buffer component concentrations and organic compounds used to isolate DNA, were further investigated to improve the DNA obtained from raw soybean seeds, which accounts for the innovation of this work. As a result, lysis buffer (2% SDS (w/v), 150 mM NaCl, 50 mM Tris/HCl, 50 mM EDTA, pH 8.0) and organic reagents including chloroform/isoamyl alcohol (24:1, v/v) (C: I), isopropanol, and ethanol corresponding to the extraction and first and second precipitation procedures, respectively, were used in the optimized SDS method. The optimized method was verified by extracting approximately 2020-2444 ng DNA/mg soybean with A260/280 ratios of 1.862-1.954 from five biotech and non-biotech soybean varieties. Only 0.5 mg of soya was required to obtain enough DNA for PCR amplification using the optimized SDS-based method. These results indicate that the screening protocol in the present study achieves the highest suitability and efficiency for DNA isolation from raw soya seed flour.
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Affiliation(s)
- Yimiao Xia
- College of Food Science and Technology, Henan University of Technology, Zhengzhou 450001, Henan, China
| | - Fusheng Chen
- College of Food Science and Technology, Henan University of Technology, Zhengzhou 450001, Henan, China
| | - Yan Du
- College of Food Science and Technology, Henan University of Technology, Zhengzhou 450001, Henan, China
| | - Chen Liu
- College of Food Science and Technology, Henan University of Technology, Zhengzhou 450001, Henan, China
| | - Guanhao Bu
- College of Food Science and Technology, Henan University of Technology, Zhengzhou 450001, Henan, China
| | - Ying Xin
- College of Food Science and Technology, Henan University of Technology, Zhengzhou 450001, Henan, China
| | - Boye Liu
- College of Food Science and Technology, Henan University of Technology, Zhengzhou 450001, Henan, China
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Hosseini MS, Eslami G, Hajimohammadi B, Fallahzadeh H, Derakhshan Z, Conti GO, Ferrante M. WITHDRAWN: Monitoring the prevalence of genetically modified (GM) maize in Iran food products. Food Chem Toxicol 2018:S0278-6915(18)30010-3. [PMID: 29337228 DOI: 10.1016/j.fct.2018.01.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2018] [Accepted: 01/08/2018] [Indexed: 11/18/2022]
Abstract
This article has been withdrawn at the request of the author(s) and/or editor. The Publisher apologizes for any inconvenience this may cause. The full Elsevier Policy on Article Withdrawal can be found at https://www.elsevier.com/about/our-business/policies/article-withdrawal.
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Affiliation(s)
- Motahreh Sadat Hosseini
- Department of Food Hygiene and Safety, Faculty of Health, Shahid Sadoughi University of Medical Sciences, Yazd, Iran; Student Research Committee, Shahid Sadoughi University of Medical Sciences, Yazd, Iran
| | - Gilda Eslami
- Research Center for Food Hygiene and Safety, Faculty of Health, Shahid Sadoughi University of Medical Sciences, Yazd, Iran; Department of Parasitology and Mycology, Faculty of Medicine, Shahid Sadoughi University of Medical Sciences, Yazd, Iran; Student Research Committee, Shahid Sadoughi University of Medical Sciences, Yazd, Iran
| | - Bahador Hajimohammadi
- Department of Food Hygiene and Safety, Faculty of Health, Shahid Sadoughi University of Medical Sciences, Yazd, Iran; Research Center for Food Hygiene and Safety, Faculty of Health, Shahid Sadoughi University of Medical Sciences, Yazd, Iran; Student Research Committee, Shahid Sadoughi University of Medical Sciences, Yazd, Iran
| | - Hossein Fallahzadeh
- Research Center of Prevention and Epidemiology of Non-communicable Disease, Shahid Sadoughi University of Medical Sciences, Yazd, Iran; Student Research Committee, Shahid Sadoughi University of Medical Sciences, Yazd, Iran
| | - Zahra Derakhshan
- Environmental Science and Technology Research Center, Department of Environmental Health Engineering, Shahid Sadoughi University of Medical Sciences, Yazd, Iran; Department of Environmental Health, School of Health, Larestan, University of Medical Sciences, Larestan, Iran; Student Research Committee, Shahid Sadoughi University of Medical Sciences, Yazd, Iran
| | - Gea Oliveri Conti
- Environmental and Food Hygiene Laboratories (LIAA) of Department of Medical Sciences, Surgical and Advanced Technologies "G.F. Ingrassia", Hygiene and Public Health, University of Catania, Italy; Student Research Committee, Shahid Sadoughi University of Medical Sciences, Yazd, Iran
| | - Margherita Ferrante
- Environmental and Food Hygiene Laboratories (LIAA) of Department of Medical Sciences, Surgical and Advanced Technologies "G.F. Ingrassia", Hygiene and Public Health, University of Catania, Italy; Student Research Committee, Shahid Sadoughi University of Medical Sciences, Yazd, Iran
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17
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Identification of Enzymes Involved in Sesterterpene Biosynthesis in Marine Fungi. Methods Enzymol 2018; 604:441-498. [DOI: 10.1016/bs.mie.2018.04.023] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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18
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Wang Z, Yang Q, Zhang Y, Meng Z, Ma X, Zhang W. Saltatory Rolling Circle Amplification (SRCA): a Novel Nucleic Acid Isothermal Amplification Technique Applied for Rapid Detection of Shigella Spp. in Vegetable Salad. FOOD ANAL METHOD 2017. [DOI: 10.1007/s12161-017-1021-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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19
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Establishment of a loop-mediated isothermal amplification (LAMP) detection method for genetically modified maize MON88017. Eur Food Res Technol 2016. [DOI: 10.1007/s00217-016-2678-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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20
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Turkec A, Kazan H, Baykut A, Lucas SJ. Evalution of DNA extraction methods in order to monitor genetically modified materials in soy foodstuffs and feeds commercialised in Turkey by multiplex real-time PCR. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2015; 95:386-92. [PMID: 24816675 DOI: 10.1002/jsfa.6731] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2014] [Revised: 04/22/2014] [Accepted: 05/06/2014] [Indexed: 06/03/2023]
Abstract
BACKGROUND Soybean is one of the most important biotech crops, widely used as an ingredient in both foodstuffs and feed. DNA extraction methods have been evaluated to detect the presence of genetically modified (GM) materials in soya-containing food and feed products commercialised in Turkey. RESULTS All extraction methods performed well for the majority of soya foods and feed products analysed. However, the most successful method varied between different products; the Foodproof, Genespin and the cetyltrimethylammonium bromide (CTAB) methods each produced the highest DNA yield and purity for different soya foodstuffs and feeds. Of the samples tested, 20% were positive for the presence of at least two GM elements (35S/NOS) while 11% contained an additional GM element (35S/NOS/FMV). Of the tested products, animal feeds showed a larger prevalence of GM material (50%) than the soya-containing foodstuffs (13%). CONCLUSION The best performing extraction methods proved to be the Foodproof, Genespin and CTAB methods for soya-containing food and feed products. The results obtained herein clearly demonstrate the presence of GM soybean in the Turkish market, and that the Foodproof GMO Screening Kit provides reliable screening of soy-containing food and feed products.
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Affiliation(s)
- Aydin Turkec
- Department of Plant and Animal Production, Vocational School of Mustafakemalpasa, University of Uludag, 16500, Bursa, Turkey
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21
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Wang X, Teng D, Guan Q, Tian F, Wang J. Detection of genetically modified crops using multiplex asymmetric polymerase chain reaction and asymmetric hyperbranched rolling circle amplification coupled with reverse dot blot. Food Chem 2014; 173:1022-9. [PMID: 25466120 DOI: 10.1016/j.foodchem.2014.10.126] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2014] [Revised: 08/14/2014] [Accepted: 10/22/2014] [Indexed: 02/04/2023]
Abstract
To meet the ever-increasing demand for detection of genetically modified crops (GMCs), low-cost, high-throughput and high-accuracy detection assays are needed. The new multiplex asymmetric polymerase chain reaction and asymmetric hyper-branched rolling circle amplification coupled with reverse dot blot (RDB) systems were developed to detect GMCs. Thirteen oligonucleotide probes were designed to identify endogenous targets (Lec1, Hmg and Sad1), event-specific targets (RRS-5C, RRS-3C, Bt176-3C and MON810-3C), screening targets (35S promoter and NOS terminator), and control targets (18S and PLX). Optimised conditions were as follows: tailed hybridization probes (1-2 pmol/l) were immobilized on a membrane by baking for 2h, and a 10:1 ratio of forward to reverse primers was used. The detection limits were 0.1 μg/l of 2% RRS and 0.5 ng/l of DNA from genetically modified (GM) soybean. These results indicate that the RDB assay could be used to detect multiplex target genes of GMCs rapidly and inexpensively.
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Affiliation(s)
- Xiumin Wang
- Key Laboratory of Feed Biotechnology, Ministry of Agriculture, Beijing 100081, China; Gene Engineering Laboratory, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Da Teng
- Key Laboratory of Feed Biotechnology, Ministry of Agriculture, Beijing 100081, China; Gene Engineering Laboratory, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Qingfeng Guan
- Key Laboratory of Feed Biotechnology, Ministry of Agriculture, Beijing 100081, China; Gene Engineering Laboratory, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Fang Tian
- Baotou City Health School, Baotou Medical College of Career Technical College, Baotou 014030, China
| | - Jianhua Wang
- Key Laboratory of Feed Biotechnology, Ministry of Agriculture, Beijing 100081, China; Gene Engineering Laboratory, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
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Turkec A, Kazan H, Karacanli B, Lucas SJ. DNA extraction techniques compared for accurate detection of genetically modified organisms (GMOs) in maize food and feed products. Journal of Food Science and Technology 2014; 52:5164-71. [PMID: 26243938 DOI: 10.1007/s13197-014-1547-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Revised: 06/01/2014] [Accepted: 09/01/2014] [Indexed: 11/26/2022]
Abstract
In this paper, DNA extraction methods have been evaluated to detect the presence of genetically modified organisms (GMOs) in maize food and feed products commercialised in Turkey. All the extraction methods tested performed well for the majority of maize foods and feed products analysed. However, the highest DNA content was achieved by the Wizard, Genespin or the CTAB method, all of which produced optimal DNA yield and purity for different maize food and feed products. The samples were then screened for the presence of GM elements, along with certified reference materials. Of the food and feed samples, 8 % tested positive for the presence of one GM element (NOS terminator), of which half (4 % of the total) also contained a second element (the Cauliflower Mosaic Virus 35S promoter). The results obtained herein clearly demonstrate the presence of GM maize in the Turkish market, and that the Foodproof GMO Screening Kit provides reliable screening of maize food and feed products.
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Affiliation(s)
- Aydin Turkec
- Uludag University Plant and Animal Production Department, Mustafa Kemalpasa Vocational School, 16500 Bursa, Turkey
| | - Hande Kazan
- Elips Health Products Ltd, Ataturk mh. Namık Kemal cd no: 17, Tan Plaza, Atasehir, Istanbul Turkey
| | - Burçin Karacanli
- Elips Health Products Ltd, Ataturk mh. Namık Kemal cd no: 17, Tan Plaza, Atasehir, Istanbul Turkey
| | - Stuart J Lucas
- Sabanci University Nanotechnology Research and Application Centre, Orhanlı, 34956, Tuzla, Istanbul Turkey
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23
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Sun Y, Zhao L, Zhao M, Zhu R, Deng J, Wang F, Li F, Ding Y, Tian R, Qian Y. Four DNA extraction methods used in loop-mediated isothermal amplification for rapid adenovirus detection. J Virol Methods 2014; 204:49-52. [DOI: 10.1016/j.jviromet.2014.04.006] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2013] [Revised: 01/29/2014] [Accepted: 04/04/2014] [Indexed: 10/25/2022]
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24
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Focke F, Haase I, Fischer M. Loop-mediated isothermal amplification (LAMP): methods for plant species identification in food. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2013; 61:2943-2949. [PMID: 23432417 DOI: 10.1021/jf304295b] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Loop-mediated isothermal amplification (LAMP) is a DNA-based analytical method that can be used as an isothermal alternative to polymerase chain reaction (PCR). In comparison to PCR, the advantage of LAMP is the possibility to perform the isothermal reaction without any sophisticated technical equipment; only a water bath is needed, and naked eye detection is sufficient. Up to now, an application of LAMP methods for the detection of even closely related plant species in food or feed matrices has not been described, whereas a large number of PCR methods for that topic are cited in the literature. The aim of the study was the evaluation of LAMP-based methods for plant species identification with respect to method parameters such as R(2), LOD, and LOQ. An existing (real-time) PCR method (for the detection of spices) was used for comparison. It could be shown that the developed LAMP methods have potential as alternative strategies to PCR in DNA-based analysis.
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Affiliation(s)
- Felix Focke
- Hamburg School of Food Science, Institute of Food Chemistry, University of Hamburg , Grindelallee 117, 20146 Hamburg, Germany
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25
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Wang X, Teng D, Xi D, Guan Q, Wang J. Construction of a reference plasmid containing ten targets for the detection of genetically modified crops. Plasmid 2013; 69:108-13. [PMID: 23085154 DOI: 10.1016/j.plasmid.2012.09.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2012] [Revised: 09/07/2012] [Accepted: 09/10/2012] [Indexed: 11/30/2022]
Abstract
Standard reference molecules play a significant role for the detection of genetically modified (GM) crops and products. The newest reference molecules should catch up with the rapid development of GM crops in the world. In this work, a reference plasmid containing ten targets from GM soybean, maize and cotton was constructed on the basis of the pTLE8 harboring eight targets only from GM soybean and cotton. Three target segments of the Bt176 event-specific 3'-junction (Bt176G3'), MON810 event-specific 3'-junction (MON810G3') and the endogenous maize Hmg genes, were fused into the 890 bp fragment by overlap extension PCR. The CP4 EPSPS gene in the plasmid pTLE8 previously constructed in our laboratory was replaced with above fusion fragment, thus generating a new plasmid pTLH10 containing ten target genes from GM soybean, maize and cotton. The PCR efficiencies with pTLH10 as a calibrator ranged from 93.3% to 99.9% for the standard curves of the Bt176G3', MON810G3' and Hmg genes. The standard deviation (SD) values of repeatability were from 0.04 to 0.8 for three different days and from 0.12 to 1.14 for one day, respectively. These results indicated that the reference plasmid constructed in this work is also suitable for the identification of GM maize, and would be an important tool to establish a feasible identification management for various GM crops components.
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Affiliation(s)
- Xiumin Wang
- Key Laboratory of Feed Biotechnology, Ministry of Agriculture, Beijing 100081, PR China
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