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Singh Y, Geringer SA, Demchenko AV. Synthesis and Glycosidation of Anomeric Halides: Evolution from Early Studies to Modern Methods of the 21st Century. Chem Rev 2022; 122:11701-11758. [PMID: 35675037 DOI: 10.1021/acs.chemrev.2c00029] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Advances in synthetic carbohydrate chemistry have dramatically improved access to common glycans. However, many novel methods still fail to adequately address challenges associated with chemical glycosylation and glycan synthesis. Since a challenge of glycosylation has remained, scientists have been frequently returning to the traditional glycosyl donors. This review is dedicated to glycosyl halides that have played crucial roles in shaping the field of glycosciences and continue to pave the way toward our understanding of chemical glycosylation.
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Affiliation(s)
- Yashapal Singh
- Department of Chemistry and Biochemistry, University of Missouri-St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
| | - Scott A Geringer
- Department of Chemistry and Biochemistry, University of Missouri-St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
| | - Alexei V Demchenko
- Department of Chemistry and Biochemistry, University of Missouri-St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States.,Department of Chemistry, Saint Louis University, 3501 Laclede Avenue, St. Louis, Missouri 63103, United States
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2
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Hansen PE. Isotope Effects on Chemical Shifts in the Study of Hydrogen Bonds in Small Molecules. Molecules 2022; 27:molecules27082405. [PMID: 35458603 PMCID: PMC9026942 DOI: 10.3390/molecules27082405] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Revised: 04/03/2022] [Accepted: 04/05/2022] [Indexed: 11/16/2022] Open
Abstract
This review is giving a short introduction to the techniques used to investigate isotope effects on NMR chemical shifts. The review is discussing how isotope effects on chemical shifts can be used to elucidate the importance of either intra- or intermolecular hydrogen bonding in ionic liquids, of ammonium ions in a confined space, how isotope effects can help define dimers, trimers, etc., how isotope effects can lead to structural parameters such as distances and give information about ion pairing. Tautomerism is by advantage investigated by isotope effects on chemical shifts both in symmetric and asymmetric systems. The relationship between hydrogen bond energies and two-bond deuterium isotope effects on chemical shifts is described. Finally, theoretical calculations to obtain isotope effects on chemical shifts are looked into.
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Affiliation(s)
- Poul Erik Hansen
- Department of Science and Environment, Roskilde University, Universitetsvej 1, DK-4000 Roskilde, Denmark
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3
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Zhang X, Zhou S, Leonik FM, Wang L, Kuroda DG. Quantum mechanical effects in acid–base chemistry. Chem Sci 2022; 13:6998-7006. [PMID: 35774178 PMCID: PMC9200130 DOI: 10.1039/d2sc01784a] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Accepted: 05/17/2022] [Indexed: 01/04/2023] Open
Abstract
Acid–base chemistry has immense importance for explaining and predicting the chemical products formed by an acid and a base when mixed together. However, the traditional chemistry theories used to describe acid–base reactions do not take into account the effect arising from the quantum mechanical nature of the acidic hydrogen shuttling potential and its dependence on the acid base distance. Here, infrared and NMR spectroscopies, in combination with first principles simulations, are performed to demonstrate that quantum mechanical effects, including electronic and nuclear quantum effects, play an essential role in defining the acid–base chemistry when 1-methylimidazole and acetic acid are mixed together. In particular, it is observed that the acid and the base interact to form a complex containing a strong hydrogen bond, in which the acidic hydrogen atom is neither close to the acid nor to the base, but delocalized between them. In addition, the delocalization of the acidic hydrogen atom in the complex leads to characteristic IR and NMR signatures. The presence of a hydrogen delocalized state in this simple system challenges the conventional knowledge of acid–base chemistry and opens up new avenues for designing materials in which specific properties produced by the hydrogen delocalized state can be harvested. Acid-based theories do not consider the quantum mechanical nature of the acidic hydrogen shuttling potential. Here, it is demonstrated that this particularity is needed to explain the formation acid-base complex with a delocalized acidic hydrogen.![]()
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Affiliation(s)
- Xiaoliu Zhang
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, USA
| | - Shengmin Zhou
- Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, New Jersey 08854, USA
| | - Fedra M. Leonik
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, USA
| | - Lu Wang
- Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, New Jersey 08854, USA
| | - Daniel G. Kuroda
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, USA
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4
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Kolahdouzan K, Ogba OM, O'Leary DJ. 1H NMR Studies of Intramolecular OH/OH Hydrogen Bonds via Titratable Isotope Shifts. J Org Chem 2021; 87:1732-1744. [PMID: 34783564 DOI: 10.1021/acs.joc.1c01910] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Methanol titrations of partially deuterated 1,4- and 1,3-diols dissolved in nonpolar solvents such as CD2Cl2 and benzene-d6 have provided 1H NMR measurements of OH/OD isotope shifts, diagnostic for intact intramolecular hydrogen bonds, under conditions of increasing protic solvent concentration. 1,4- and 1,3-diols with conformationally favored intramolecular OH/OH hydrogen bonds can be titrated to constant isotope shift values, albeit with variable sign, in the presence of excess methanol equivalents, providing evidence for intact intramolecular hydrogen bonds under these conditions. Conversely, the isotope shift in a 1,3-diol with a conformationally labile intramolecular hydrogen bond titrated to zero when in the presence of excess equivalents methanol, consistent with intramolecular hydrogen bond rupture under these conditions. Additionally, the titration behavior of hydroxyl chemical shifts in diols and protected derivatives has revealed significant OH/OD isotope shifts in the absence of chemical shift differences (δOHin = δOHout) that are necessary for an equilibrium isotope effect, lending evidence for an intrinsic contribution to the isotope effect. OH/OD isotope shift titration thus provides a means for understanding the origins of these isotope effects and for probing the intact or nonintact nature of intramolecular OH/OH hydrogen bonds in response to intermolecular hydrogen bonds provided by a protic solvent.
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Affiliation(s)
- Kavoos Kolahdouzan
- Department of Chemistry, Pomona College, 645 North College Avenue, Claremont, California 91711, United States
| | - O Maduka Ogba
- Chemistry and Biochemistry Program, Schmid College of Science and Technology, Chapman University, Orange, California 92886, United States
| | - Daniel J O'Leary
- Department of Chemistry, Pomona College, 645 North College Avenue, Claremont, California 91711, United States
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5
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Philippi F, Welton T. Targeted modifications in ionic liquids - from understanding to design. Phys Chem Chem Phys 2021; 23:6993-7021. [PMID: 33876073 DOI: 10.1039/d1cp00216c] [Citation(s) in RCA: 48] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Ionic liquids are extremely versatile and continue to find new applications in academia as well as industry. This versatility is rooted in the manifold of possible ion types, ion combinations, and ion variations. However, to fully exploit this versatility, it is imperative to understand how the properties of ionic liquids arise from their constituents. In this work, we discuss targeted modifications as a powerful tool to provide understanding and to enable design. A 'targeted modification' is a deliberate change in the structure of an ionic liquid. This includes chemical changes in an experiment as well as changes to the parameterisation in a computer simulation. In any case, such a change must be purposeful to isolate what is of interest, studying, as far as is possible, only one concept at a time. The concepts can then be used as design elements. However, it is often found that several design elements interact with each other - sometimes synergistically, and other times antagonistically. Targeted modifications are a systematic way of navigating these overlaps. We hope this paper shows that understanding ionic liquids requires experimentalists and theoreticians to join forces and provides a tool to tackle the difficult transition from understanding to design.
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Affiliation(s)
- Frederik Philippi
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, White City Campus, London W12 0BZ, UK.
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6
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7
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Saá JM, Lillo VJ, Mansilla J. Catalysis by Networks of Cooperative Hydrogen Bonds. NONCOVALENT INTERACTIONS IN CATALYSIS 2019. [DOI: 10.1039/9781788016490-00066] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
The main paradigm of today's chemistry is sustainability. In pursuing sustainability, we need to learn from chemical processes carried out by Nature and realize that Nature does not use either strong acids, or strong bases or fancy reagents to achieve outstanding chemical processes. Instead, enzyme activity leans on the cooperation of several chemical entities to avoid strong acids or bases or to achieve such an apparently simple goal as transferring a proton from an NuH unit to an E unit (NuH + E → Nu–EH). Hydrogen bond catalysis emerged strongly two decades ago in trying to imitate Nature and avoid metal catalysis. Now to mount another step in pursuing the goal of sustainability, the focus is upon cooperativity between the different players involved in catalysis. This chapter looks at the concept of cooperativity and, more specifically, (a) examines the role of cooperative hydrogen bonded arrays of the general type NuH⋯(NuH)n⋯NuH (i.e. intermolecular cooperativity) to facilitate general acid–base catalysis, not only in the solution phase but also under solvent-free and catalyst-free conditions, and, most important, (b) analyzes the capacity of designer chiral organocatalysts displaying intramolecular networks of cooperative hydrogen bonds (NCHBs) to facilitate enantioselective synthesis by bringing conformational rigidity to the catalyst in addition to simultaneously increasing the acidity of key hydrogen atoms so to achieve better complementarity in the highly polarized transition states.
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Affiliation(s)
- José M. Saá
- Department de Química, Universitat de les Illes Balears Crta. de Valldemossa km 7.5 07122 Palma de Mallorca Illes Balears Spain
| | - Victor J. Lillo
- Department de Química, Universitat de les Illes Balears Crta. de Valldemossa km 7.5 07122 Palma de Mallorca Illes Balears Spain
| | - Javier Mansilla
- Department de Química, Universitat de les Illes Balears Crta. de Valldemossa km 7.5 07122 Palma de Mallorca Illes Balears Spain
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8
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Maduka Ogba O, Liu Z, O'Leary DJ. Vibrational analysis of a rate-slowing conformational kinetic isotope effect. Tetrahedron 2019. [DOI: 10.1016/j.tet.2018.12.051] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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9
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Diemoz KM, Hein JE, Wilson SO, Fettinger JC, Franz AK. Reaction Progress Kinetics Analysis of 1,3-Disiloxanediols as Hydrogen-Bonding Catalysts. J Org Chem 2017; 82:6738-6747. [DOI: 10.1021/acs.joc.7b00875] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- Kayla M. Diemoz
- Department
of Chemistry, University of California, One Shields Avenue, Davis, California 95616, United States
| | - Jason E. Hein
- Department
of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC Canada, V6T1Z1
| | - Sean O. Wilson
- Department
of Chemistry, University of California, One Shields Avenue, Davis, California 95616, United States
| | - James C. Fettinger
- Department
of Chemistry, University of California, One Shields Avenue, Davis, California 95616, United States
| | - Annaliese K. Franz
- Department
of Chemistry, University of California, One Shields Avenue, Davis, California 95616, United States
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10
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Pelletier G, Zwicker A, Allen CL, Schepartz A, Miller SJ. Aqueous Glycosylation of Unprotected Sucrose Employing Glycosyl Fluorides in the Presence of Calcium Ion and Trimethylamine. J Am Chem Soc 2016; 138:3175-82. [PMID: 26859619 PMCID: PMC4817112 DOI: 10.1021/jacs.5b13384] [Citation(s) in RCA: 60] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
We report a synthetic glycosylation reaction between sucrosyl acceptors and glycosyl fluoride donors to yield the derived trisaccharides. This reaction proceeds at room temperature in an aqueous solvent mixture. Calcium salts and a tertiary amine base promote the reaction with high site-selectivity for either the 3'-position or 1'-position of the fructofuranoside unit. Because nonenzymatic aqueous oligosaccharide syntheses are underdeveloped, mechanistic studies were carried out in order to identify the origin of the selectivity, which we hypothesized was related to the structure of the hydroxyl group array in sucrose. The solution conformation of various monodeoxysucrose analogs revealed the co-operative nature of the hydroxyl groups in mediating both this aqueous glycosyl bond-forming reaction and the site-selectivity at the same time.
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Affiliation(s)
- Guillaume Pelletier
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, CT 06520-8107
| | - Aaron Zwicker
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, CT 06520-8107
| | - C. Liana Allen
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, CT 06520-8107
| | - Alanna Schepartz
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, CT 06520-8107
| | - Scott J. Miller
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, CT 06520-8107
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11
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Peng CY, Shen JY, Chen YT, Wu PJ, Hung WY, Hu WP, Chou PT. Optically Triggered Stepwise Double-Proton Transfer in an Intramolecular Proton Relay: A Case Study of 1,8-Dihydroxy-2-naphthaldehyde. J Am Chem Soc 2015; 137:14349-57. [PMID: 26493857 DOI: 10.1021/jacs.5b08562] [Citation(s) in RCA: 102] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
1,8-Dihydroxy-2-naphthaldehyde (DHNA), having doubly intramolecular hydrogen bonds, was strategically designed and synthesized in an aim to probe a long-standing fundamental issue regarding synchronous versus asynchronous double-proton transfer in the excited state. In cyclohexane, DHNA shows the lowest lying S0 →S1 (π-π*) absorption at ∼400 nm. Upon excitation, two large Stokes shifted emission bands maximized at 520 and 650 nm are resolved, which are ascribed to the tautomer emission resulting from the first and second proton-transfer products, denoted by TA* and TB*, respectively. The first proton transfer (DHNA* → TA*) is ultrafast (< system response of 150 fs), whereas the second proton transfer is reversible, for which the rates of forward (TA* → TB*) and backward (TA* ← TB*) proton transfer were determined to be (1.7 ps)(-1) and (3.6 ps)(-1), respectively. The fast equilibrium leads to identical population lifetimes of ∼54 ps for both TA* and TB* tautomers. Similar excited-state double-proton transfer takes place for DHNA in a single crystal, resulting in TA* (560 nm) and TB* (650 nm) dual-tautomer emission. A comprehensive 2D plot of reaction potential energy surface further proves that the sequential two-step proton motion is along the minimum energetic pathway firmly supporting the experimental results. Using DHNA as a paradigm, we thus demonstrate unambiguously a stepwise, proton-relay type of intramolecular double-proton transfer reaction in the excited state, which should gain fundamental understanding of the multiple proton transfer reactions.
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Affiliation(s)
- Chia-Yu Peng
- Department of Chemistry and Biochemistry, National Chung Cheng University , Chia-Yi 62102, Taiwan R.O.C
| | - Jiun-Yi Shen
- Department of Chemistry and Center for Emerging Material and Advanced Devices, National Taiwan University , Taipei 10617, Taiwan R.O.C
| | - Yi-Ting Chen
- Department of Chemistry and Center for Emerging Material and Advanced Devices, National Taiwan University , Taipei 10617, Taiwan R.O.C
| | - Pei-Jhen Wu
- Department of Chemistry and Center for Emerging Material and Advanced Devices, National Taiwan University , Taipei 10617, Taiwan R.O.C
| | - Wen-Yi Hung
- Institute of Optoelectronic Sciences, National Taiwan Ocean University , Keelung 20224, Taiwan R.O.C
| | - Wei-Ping Hu
- Department of Chemistry and Biochemistry, National Chung Cheng University , Chia-Yi 62102, Taiwan R.O.C
| | - Pi-Tai Chou
- Department of Chemistry and Center for Emerging Material and Advanced Devices, National Taiwan University , Taipei 10617, Taiwan R.O.C
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12
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Wilson PB, Williams IH. Critical evaluation of anharmonic corrections to the equilibrium isotope effect for methyl cation transfer from vacuum to dielectric continuum. Mol Phys 2015. [DOI: 10.1080/00268976.2015.1007106] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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13
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Isotope effects on chemical shifts in the study of intramolecular hydrogen bonds. Molecules 2015; 20:2405-24. [PMID: 25647577 PMCID: PMC6272349 DOI: 10.3390/molecules20022405] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2014] [Revised: 12/17/2014] [Accepted: 01/05/2015] [Indexed: 11/16/2022] Open
Abstract
The paper deals with the use of isotope effects on chemical shifts in characterizing intramolecular hydrogen bonds. Both so-called resonance-assisted (RAHB) and non-RAHB systems are treated. The importance of RAHB will be discussed. Another very important issue is the borderline between “static” and tautomeric systems. Isotope effects on chemical shifts are particularly useful in such studies. All kinds of intramolecular hydrogen bonded systems will be treated, typical hydrogen bond donors: OH, NH, SH and NH+, typical acceptors C=O, C=N, C=S C=N−. The paper will be deal with both secondary and primary isotope effects on chemical shifts. These two types of isotope effects monitor the same hydrogen bond, but from different angles.
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14
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Lomas JS. 1H NMR spectra of alkane-1,3-diols in benzene: GIAO/DFT shift calculations. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2013; 51:469-481. [PMID: 23784999 DOI: 10.1002/mrc.3973] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2013] [Revised: 05/07/2013] [Accepted: 05/07/2013] [Indexed: 06/02/2023]
Abstract
The proton nuclear magnetic resonance (NMR) spectra of propane-1,3-diol, 2-methylpropane-1,3-diol, 2,2-dimethylpropane-1,3-diol, butane-1,3-diol, 3-methylbutane-1,3-diol, pentane-2,4-diols (dl and meso), 2-methylpentane-2,4-diol and cyclohexane-1,3-diols (cis and trans) in benzene have been analysed. The conformer distribution and the NMR shifts of these diols have been computed on the basis of density functional theory, the solvent being included by means of the integral equation formalism phase continuum model (IEFPCM) implemented in Gaussian 09. Relative Gibbs energies of all conformers are calculated at the Perdew, Burke and Ernzerhof (PBE)0/6-311 + G(d,p) level, and NMR shifts by the gauge-including atomic orbital method with the PBE0/6-311 + G(d,p) geometry and the cc-pVTZ basis set. Vicinal coupling constants for 1,2- and 1,3-diols are rationalised in terms of relative conformer populations and geometries. The NMR shifts of hydrogen-bonded protons in individual conformers of alkane-1,n-diols show a very rough correlation with the OH⋯OH distances. The computed overall NMR shifts for CH protons in 1,2- and 1,3-diols are systematically high but correlate very well with the experimental values, with a gradient of 1.07 ± 0.01. Some values for nonequivalent methylene protons in 1,3-diols are reversed, calculation giving enhanced values for the proton anti to the COH bonds. Errors in the NMR shifts computed for the OH protons of nonsymmetrical diols appear to be related to relative populations of conformers where one or other of the OH groups is the donor. Some results based on the second-order Møller-Plesset approach, the Becke three-parameter Lee-Yang-Parr method and on the IEFPCM solvation model implemented in Gaussian 03 are included.
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Affiliation(s)
- John S Lomas
- Univ Paris Diderot, Sorbonne Paris Cité, ITODYS, UMR 7086, F-75205, Paris, France
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15
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Sobczyk L, Obrzud M, Filarowski A. H/D isotope effects in hydrogen bonded systems. Molecules 2013; 18:4467-76. [PMID: 23591926 PMCID: PMC6269986 DOI: 10.3390/molecules18044467] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2013] [Revised: 03/18/2013] [Accepted: 04/05/2013] [Indexed: 11/16/2022] Open
Abstract
An extremely strong H/D isotope effect observed in hydrogen bonded A-H…B systems is connected with a reach diversity of the potential shape for the proton/deuteron motion. It is connected with the anharmonicity of the proton/deuteron vibrations and of the tunneling effect, particularly in cases of short bridges with low barrier for protonic and deuteronic jumping. Six extreme shapes of the proton motion are presented starting from the state without possibility of the proton transfer up to the state with a full ionization. The manifestations of the H/D isotope effect are best reflected in the infra-red absorption spectra. A most characteristic is the run of the relationship between the isotopic ratio νH/νD and position of the absorption band shown by using the example of NHN hydrogen bonds. One can distinguish a critical range of correlation when the isotopic ratio reaches the value of ca. 1 and then increases up to unusual values higher than . The critical range of the isotope effect is also visible in NQR and NMR spectra. In the critical region one observes a stepwise change of the NQR frequency reaching 1.1 MHz. In the case of NMR, the maximal isotope effect is reflected on the curve presenting the dependence of Δδ (1H,2H) on δ (1H). This effect corresponds to the range of maximum on the correlation curve between δH and ΔpKa that is observed in various systems. There is a lack in the literature of quantitative information about the influence of isotopic substitution on the dielectric properties of hydrogen bond except the isotope effect on the ferroelectric phase transition in some hydrogen bonded crystals.
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Affiliation(s)
- Lucjan Sobczyk
- Faculty of Chemistry, University of Wrocław, Joliot-Curie 14, 50-383 Wrocław, Poland.
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Fong A, Meyer MP, O’Leary DJ. Enthalpy/entropy contributions to conformational KIEs: theoretical predictions and comparison with experiment. Molecules 2013; 18:2281-96. [PMID: 23429344 PMCID: PMC6269852 DOI: 10.3390/molecules18022281] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2012] [Revised: 01/22/2013] [Accepted: 02/01/2013] [Indexed: 11/16/2022] Open
Abstract
Previous theoretical studies of Mislow’s doubly-bridged biphenyl ketone 1 and dihydrodimethylphenanthrene 2 have determined significant entropic contributions to their normal (1) and inverse (2) conformational kinetic isotope effects (CKIEs). To broaden our investigation, we have used density functional methods to characterize the potential energy surfaces and vibrational frequencies for ground and transition structures of additional systems with measured CKIEs, including [2.2]-metaparacyclophane-d (3), 1,1'-binaphthyl (4), 2,2'-dibromo-[1,1'-biphenyl]-4,4'-dicarboxylic acid (5), and the 2-(N,N,N-trimethyl)-2'-(N,N-dimethyl)-diaminobiphenyl cation (6). We have also computed CKIEs in a number of systems whose experimental CKIEs are unknown. These include analogs of 1 in which the C=O groups have been replaced with CH2 (7), O (8), and S (9) atoms and ring-expanded variants of 2 containing CH2 (10), O (11), S (12), or C=O (13) groups. Vibrational entropy contributes to the CKIEs in all of these systems with the exception of cyclophane 3, whose isotope effect is predicted to be purely enthalpic in origin and whose Bigeleisen-Mayer ZPE term is equivalent to ΔΔH‡. There is variable correspondence between these terms in the other molecules studied, thus identifying additional examples of systems in which the Bigeleisen-Mayer formalism does not correlate with ΔH/ΔS dissections.
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Affiliation(s)
- Aaron Fong
- Department of Chemistry, Pomona College, 645 North College Avenue, Claremont, CA 91711, USA; E-Mail:
| | - Matthew P. Meyer
- Department of Chemistry, University of California, Merced, Atwater, CA 95301, USA
- Authors to whom correspondence should be addressed; E-Mails: (M.P.M.); (D.J.O.); Tel.: +1-209-228-2982 (M.P.M.); Fax: +1-209-228-4646 (M.P.M.); Tel.: +1-909-621-8444 (D.J.O.); Fax: +1-909-607-7726 (D.J.O.)
| | - Daniel J. O’Leary
- Department of Chemistry, Pomona College, 645 North College Avenue, Claremont, CA 91711, USA; E-Mail:
- Authors to whom correspondence should be addressed; E-Mails: (M.P.M.); (D.J.O.); Tel.: +1-209-228-2982 (M.P.M.); Fax: +1-209-228-4646 (M.P.M.); Tel.: +1-909-621-8444 (D.J.O.); Fax: +1-909-607-7726 (D.J.O.)
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17
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Kontogianni VG, Charisiadis P, Primikyri A, Pappas CG, Exarchou V, Tzakos AG, Gerothanassis IP. Hydrogen bonding probes of phenol –OH groups. Org Biomol Chem 2013; 11:1013-25. [DOI: 10.1039/c2ob27117f] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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18
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Filot IAW, Palmans ARA, Hilbers PAJ, Hensen EJM, de Greef TFA, Pidko EA. The origin of isotope-induced helical-sense bias in supramolecular polymers of benzene-1,3,5-tricarboxamides. Phys Chem Chem Phys 2012; 14:13997-4002. [PMID: 22991036 DOI: 10.1039/c2cp42302b] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The molecular origin of the isotope-induced diastereomeric enrichment in helical supramolecular polymers consisting of trialkylbenzene-1,3,5-tricarboxamides (BTAs) is studied using plane-wave DFT calculations. We demonstrate that the creation of a chiral center at the α-position of the alkyl chains of a BTA by H-D exchange leads to a small but notable preference for the formation of supramolecular hydrogen bonded structures with a particular helicity. The bias for one helical sense preference is caused by the orientation of the vibrational eigenmodes of the C-H and C-D stretching frequencies at the chiral center and by hyperconjugative destabilization of the anti C-H orbital.
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Affiliation(s)
- Ivo A W Filot
- Institute for Complex Molecular Systems, Eindhoven University of Technology, P. O. Box 513, 5600 MB, Eindhoven, The Netherlands
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19
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Wilson SO, Tran NT, Franz AK. NMR and X-ray Studies of Hydrogen Bonding for Amide-Containing Silanediols. Organometallics 2012. [DOI: 10.1021/om300736n] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Sean O. Wilson
- Department of Chemistry, University of California, One Shields
Avenue, Davis, California 95616, United States
| | - Ngon T. Tran
- Department of Chemistry, University of California, One Shields
Avenue, Davis, California 95616, United States
| | - Annaliese K. Franz
- Department of Chemistry, University of California, One Shields
Avenue, Davis, California 95616, United States
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Larionov E, Mahesh M, Spivey AC, Wei Y, Zipse H. Theoretical Prediction of Selectivity in Kinetic Resolution of Secondary Alcohols Catalyzed by Chiral DMAP Derivatives. J Am Chem Soc 2012; 134:9390-9. [DOI: 10.1021/ja302420g] [Citation(s) in RCA: 78] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Evgeny Larionov
- Department of Chemistry, LMU München, Butenandtstrasse 5-13, D-81377
München, Germany
| | - Mohan Mahesh
- Department of Chemistry, South
Kensington Campus, Imperial College, London,
SW7 2AZ, United Kingdom
| | - Alan C. Spivey
- Department of Chemistry, South
Kensington Campus, Imperial College, London,
SW7 2AZ, United Kingdom
| | - Yin Wei
- Department of Chemistry, LMU München, Butenandtstrasse 5-13, D-81377
München, Germany
| | - Hendrik Zipse
- Department of Chemistry, LMU München, Butenandtstrasse 5-13, D-81377
München, Germany
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OH stretching frequencies in systems with intramolecular hydrogen bonds: Harmonic and anharmonic analyses. Chem Phys 2011. [DOI: 10.1016/j.chemphys.2011.09.011] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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O'Leary DJ, Rablen PR, Meyer MP. On the Origin of Conformational Kinetic Isotope Effects. Angew Chem Int Ed Engl 2011; 50:2564-7. [DOI: 10.1002/anie.201007322] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2010] [Indexed: 11/06/2022]
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O'Leary DJ, Rablen PR, Meyer MP. On the Origin of Conformational Kinetic Isotope Effects. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201007322] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Rayne S, Forest K. Gas phase acidities and associated equilibrium isotope effects for selected main group mono- and polyhydrides, carbon acids, and oxyacids: A G4 and W1BD study. ACTA ACUST UNITED AC 2010. [DOI: 10.1016/j.theochem.2010.06.029] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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