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Mahía A, Kiib AE, Nisavic M, Svenningsen EB, Palmfeldt J, Poulsen TB. α-Lactam Electrophiles for Covalent Chemical Biology. Angew Chem Int Ed Engl 2023; 62:e202304142. [PMID: 37114559 DOI: 10.1002/anie.202304142] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 04/27/2023] [Accepted: 04/28/2023] [Indexed: 04/29/2023]
Abstract
Electrophilic groups are one of the key pillars of contemporary chemical biology and medicinal chemistry. For instance, 3-membered N-heterocyclic compounds-such as aziridines, azirines, and oxaziridines-possess unique electronic and structural properties which underlie their potential and applicability as covalent tools. The α-lactams are also members of this group of compounds, however, their utility within the field remains unexplored. Here, we demonstrate an α-lactam reagent (AM2) that is tolerant to aqueous buffers while being reactive towards biologically relevant nucleophiles. Interestingly, carboxylesterases 1 and 2 (CES1/2), both serine hydrolases with key roles in endo- and xenobiotic metabolism, were found as primary covalent targets for AM2 in HepG2 liver cancer cells. All in all, this study constitutes the starting point for the further development and exploration of α-lactam-based electrophilic probes in covalent chemical biology.
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Affiliation(s)
- Alejandro Mahía
- Department of Chemistry, Aarhus University, Langelandsgade 140, 8000, Aarhus C, Denmark
| | - Anders E Kiib
- Department of Chemistry, Aarhus University, Langelandsgade 140, 8000, Aarhus C, Denmark
| | - Marija Nisavic
- Department of Chemistry, Aarhus University, Langelandsgade 140, 8000, Aarhus C, Denmark
- Department of Clinical Medicine-Research Unit for Molecular Medicine, Aarhus University Hospital, Palle Juul-Jensens Boulevard 82, 8200, Aarhus N, Denmark
| | - Esben B Svenningsen
- Department of Chemistry, Aarhus University, Langelandsgade 140, 8000, Aarhus C, Denmark
| | - Johan Palmfeldt
- Department of Clinical Medicine-Research Unit for Molecular Medicine, Aarhus University Hospital, Palle Juul-Jensens Boulevard 82, 8200, Aarhus N, Denmark
| | - Thomas B Poulsen
- Department of Chemistry, Aarhus University, Langelandsgade 140, 8000, Aarhus C, Denmark
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2
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Mizuta S, Kitamura K, Kitagawa A, Yamaguchi T, Ishikawa T. Silver-Promoted Fluorination Reactions of α-Bromoamides. Chemistry 2021; 27:5930-5935. [PMID: 33274783 DOI: 10.1002/chem.202004769] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Revised: 12/03/2020] [Indexed: 01/18/2023]
Abstract
Silver-promoted C-F bond formation in α-bromoamides by using AgF under mild conditions is reported. This simple method enables access to tertiary, secondary, and primary alkyl fluorides involving biomolecular scaffolds. This transformation is applicable to primary and secondary amides and shows broad functional-group tolerance. Kinetics experiments revealed that the reaction rate increased in the order of 3°>2°>1° α-carbon atom. In addition, it was found that the acidic amide proton plays an important role in accelerating the reaction. Mechanistic studies suggested generation of an aziridinone intermediate that undergoes subsequent nucleophilic addition to form the C-F bond with stereospecificity (i.e., retention of configuration). The synthesis of sterically hindered alcohols and ethers by using AgI is also demonstrated. Examples of reactions of α-bromoamides with O nucleophiles are presented.
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Affiliation(s)
- Satoshi Mizuta
- Graduate School of Biomedical Sciences, Nagasaki University, 1-14 Bunkyo, Nagasaki, 852-8521, Japan
| | - Kanami Kitamura
- Graduate School of Biomedical Sciences, Nagasaki University, 1-14 Bunkyo, Nagasaki, 852-8521, Japan
| | - Ayako Kitagawa
- Graduate School of Biomedical Sciences, Nagasaki University, 1-14 Bunkyo, Nagasaki, 852-8521, Japan
| | - Tomoko Yamaguchi
- Graduate School of Biomedical Sciences, Nagasaki University, 1-14 Bunkyo, Nagasaki, 852-8521, Japan
| | - Takeshi Ishikawa
- Department of Chemistry, Biotechnology and Chemical Engineering, Graduate School of Science and Engineering, Kagoshima University, 1-21-40 Korimoto, Kagoshima, 890-0065, Japan
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3
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Hirata G, Takeuchi K, Shimoharai Y, Sumimoto M, Kaizawa H, Nokami T, Koike T, Abe M, Shirakawa E, Nishikata T. Chemistry of Tertiary Carbon Center in the Formation of Congested C-O Ether Bonds. Angew Chem Int Ed Engl 2021; 60:4329-4334. [PMID: 33350568 DOI: 10.1002/anie.202010697] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Revised: 10/09/2020] [Indexed: 11/11/2022]
Abstract
Nucleophilic substitutions, including SN 1 and SN 2, are classical and reliable reactions, but a serious drawback is their intolerance for both bulky nucleophiles and chiral tertiary alkyl electrophiles for the synthesis of a chiral quaternary carbon center. An SRN 1 reaction via a radical species is another conventional method used to carry out substitution reactions of bulky nucleophiles and alkyl halides, but chiral tertiary alkyl electrophiles cannot be used. Therefore, a stereospecific nucleophilic substitution reaction using chiral tertiary alkyl electrophiles and bulky nucleophiles has not yet been well studied. In this paper, we describe the reaction of tertiary alkyl alcohols and non-chiral or chiral α-bromocarboxamides as a tertiary alkyl source for the formation of congested ether compounds possessing two different tertiary alkyl groups on the oxygen atom with stereoretention.
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Affiliation(s)
- Goki Hirata
- Graduate School of Science and Engineering, Yamaguchi University, 2-16-1 Tokiwadai, Ube, Yamaguchi, 755-8611, Japan
| | - Kentarou Takeuchi
- Graduate School of Science and Engineering, Yamaguchi University, 2-16-1 Tokiwadai, Ube, Yamaguchi, 755-8611, Japan
| | - Yusuke Shimoharai
- Graduate School of Science and Engineering, Yamaguchi University, 2-16-1 Tokiwadai, Ube, Yamaguchi, 755-8611, Japan
| | - Michinori Sumimoto
- Graduate School of Science and Engineering, Yamaguchi University, 2-16-1 Tokiwadai, Ube, Yamaguchi, 755-8611, Japan
| | - Hazuki Kaizawa
- Department of Chemistry and Biotechnology, Graduate School of Engineering (Center for Research on Green Sustainable Chemistry, Faculty of Engineering), Tottori University, 4-101 Koyamachominami, Tottori city, Tottori, 680-8552, Japan
| | - Toshiki Nokami
- Department of Chemistry and Biotechnology, Graduate School of Engineering (Center for Research on Green Sustainable Chemistry, Faculty of Engineering), Tottori University, 4-101 Koyamachominami, Tottori city, Tottori, 680-8552, Japan
| | - Takashi Koike
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, R1-27, 4259 Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa, 226-8503, Japan
| | - Manabu Abe
- Department of Chemistry, Graduate School of Science, Hiroshima University, Higashi-Hiroshima, Hiroshima, 739-8526, Japan
| | - Eiji Shirakawa
- Department of Applied Chemistry for Environment, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo, 669-1337, Japan
| | - Takashi Nishikata
- Graduate School of Science and Engineering, Yamaguchi University, 2-16-1 Tokiwadai, Ube, Yamaguchi, 755-8611, Japan
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4
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Hirata G, Takeuchi K, Shimoharai Y, Sumimoto M, Kaizawa H, Nokami T, Koike T, Abe M, Shirakawa E, Nishikata T. Chemistry of Tertiary Carbon Center in the Formation of Congested C−O Ether Bonds. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202010697] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Goki Hirata
- Graduate School of Science and Engineering Yamaguchi University 2-16-1 Tokiwadai, Ube Yamaguchi 755-8611 Japan
| | - Kentarou Takeuchi
- Graduate School of Science and Engineering Yamaguchi University 2-16-1 Tokiwadai, Ube Yamaguchi 755-8611 Japan
| | - Yusuke Shimoharai
- Graduate School of Science and Engineering Yamaguchi University 2-16-1 Tokiwadai, Ube Yamaguchi 755-8611 Japan
| | - Michinori Sumimoto
- Graduate School of Science and Engineering Yamaguchi University 2-16-1 Tokiwadai, Ube Yamaguchi 755-8611 Japan
| | - Hazuki Kaizawa
- Department of Chemistry and Biotechnology Graduate School of Engineering (Center for Research on Green Sustainable Chemistry, Faculty of Engineering) Tottori University 4-101 Koyamachominami, Tottori city Tottori 680-8552 Japan
| | - Toshiki Nokami
- Department of Chemistry and Biotechnology Graduate School of Engineering (Center for Research on Green Sustainable Chemistry, Faculty of Engineering) Tottori University 4-101 Koyamachominami, Tottori city Tottori 680-8552 Japan
| | - Takashi Koike
- Laboratory for Chemistry and Life Science Institute of Innovative Research Tokyo Institute of Technology, R1-27 4259 Nagatsuta-cho, Midori-ku Yokohama Kanagawa 226–8503 Japan
| | - Manabu Abe
- Department of Chemistry Graduate School of Science Hiroshima University, Higashi-Hiroshima Hiroshima 739-8526 Japan
| | - Eiji Shirakawa
- Department of Applied Chemistry for Environment School of Science and Technology Kwansei Gakuin University Sanda Hyogo 669-1337 Japan
| | - Takashi Nishikata
- Graduate School of Science and Engineering Yamaguchi University 2-16-1 Tokiwadai, Ube Yamaguchi 755-8611 Japan
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5
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Devillard M, Regnier V, Tripathi M, Martin D. A computational study of the interplay of steric and electronic effects in the stabilization of 1,3-(diamino)oxyallyls. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.02.029] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Box HK, Upul Kumarasinghe K, Nareddy RR, Akurathi G, Chakraborty A, Raji B, Rowland GB. Rhodium-catalyzed coupling of α-lactams with indole derivatives. Tetrahedron 2014. [DOI: 10.1016/j.tet.2014.10.049] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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7
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Affiliation(s)
- Andrey A. Tabolin
- N. D. Zelinsky
Institute
of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospekt
47, Moscow 119991, Russian Federation
| | - Sema L. Ioffe
- N. D. Zelinsky
Institute
of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospekt
47, Moscow 119991, Russian Federation
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8
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Jeffrey CS, Barnes KL, Eickhoff JA, Carson CR. Generation and Reactivity of Aza-Oxyallyl Cationic Intermediates: Aza-[4 + 3] Cycloaddition Reactions for Heterocycle Synthesis. J Am Chem Soc 2011; 133:7688-91. [DOI: 10.1021/ja201901d] [Citation(s) in RCA: 159] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | - Korry L. Barnes
- Department of Chemistry, University of Nevada—Reno, Reno, Nevada 89557, United States
| | - John A. Eickhoff
- Department of Chemistry, University of Nevada—Reno, Reno, Nevada 89557, United States
| | - Christopher R. Carson
- Department of Chemistry, University of Nevada—Reno, Reno, Nevada 89557, United States
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Aikins JA, Haurez M, Rizzo JR, Van Hoeck JP, Brione W, Kestemont JP, Stevens C, Lemair X, Stephenson GA, Marlot E, Forst M, Houpis IN. Synthesis of a Peroxime Proliferator Activated Receptor (PPAR) α/γ Agonist via Stereocontrolled Williamson Ether Synthesis and Stereospecific SN2 Reaction of S-2-Chloro Propionic Acid with Phenoxides. J Org Chem 2005; 70:4695-705. [PMID: 15932307 DOI: 10.1021/jo050268e] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The stereospecific synthesis of the PPAR alpha/gamma agonist 1 was accomplished via ethylation of the optically pure trihydroxy derivative 6, itself derived via an enzymatic resolution. The ethylation can be accomplished without epimerization only under strict control of the reaction conditions and the choice of base (sodium tert-amylate), temperature (-30 degrees C), order of addition, and solvent (DMF). The key diastereospecific SN2 reaction of the phenol 4 with S-2-chloropropionic acid is best achieved via the sodium phenoxide of 4 derived from Na0 as the reagent of choice. The structure elucidation and key purification protocols to achieve pharmaceutical purity will also be described.
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Affiliation(s)
- James A Aikins
- Chemical Product Research and Development, Lilly Development Centre, rue Granbonpre 11, B-1348 Mont-St-Guibert, Belgium
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10
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Hoffman RV, Zhao Z, Costales A, Clarke D. Origins of regioselectivity in the reactions of alpha-lactams with nucleophiles. Two distinct acid-catalyzed pathways involving O- and N-protonation. J Org Chem 2002; 67:5284-94. [PMID: 12126417 DOI: 10.1021/jo020246h] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Sterically stabilized alpha-lactams react by two distinct acid-catalyzed pathways. Protonation on oxygen results in nucleophilic attack at the acyl carbon and gives C-2 products. Protonation on nitrogen leads to nucleophilic attack at the C-3 carbon and yields C-3 products. The mechanism thus developed is very useful for understanding the changes in rates and product distributions in the reactions of sterically stabilized alpha-lactams with nucleophiles. It can also be extrapolated to other alpha-lactams so that a more coherent picture of alpha-lactam reactivity can be developed.
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Affiliation(s)
- Robert V Hoffman
- Department of Chemistry and Biochemistry, North Horseshoe Drive, New Mexico State University, Las Cruces, New Mexico 88003-8001, USA.
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11
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Würthwein EU, Hergenröther T, Quast H. exo/endoPreferences of Double Bonds in Three-Membered Ring Compounds − The Bias Toward Endocyclic Unsaturation in 3-Alkyl- and 3-Amino-2H-azirines: A Theoretical and Experimental Study. European J Org Chem 2002. [DOI: 10.1002/1099-0690(200206)2002:11<1750::aid-ejoc1750>3.0.co;2-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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12
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O'Hair RA, Reid GE. The search for stable gas phase b(1) ions derived from aliphatic amino acids: a combined experimental and ab initio study. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2000; 14:1220-1225. [PMID: 10918371 DOI: 10.1002/1097-0231(20000730)14:14<1220::aid-rcm13>3.0.co;2-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Several previous studies have shown that b(1) ions (formally acylium ions, H(2)NCHRCO(+)) derived from protonated aliphatic amino acids are unstable in the gas phase, fragmenting via decarbonylation to form a(1) ions (iminium ions, H(2)N = CHR(+)). Herein we examine the fragmentation reactions of ten potential b(1) ion precursors to determine whether stable aliphatic b(1) ions can be formed in the gas phase. Of all the systems studied, only the aziridine b(1) ion and the dehydroalanine b(1) ion were found to be stable. These experimental results are entirely consistent with ab initio calculations (at the MP2(full)/6-311G** level) which indicate that while the loss of CO from the b(1) ion of glycine is barrierless and exoethermic, the related losses from the b(1) ions of aziridine and dehydroalanine have significant barriers (29.5 and 16.2 kcal mol(-1), respectively) and are endothermic overall.
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Affiliation(s)
- R A O'Hair
- School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia.
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