Nucleation of Calcium Phosphate on 11-Mercaptoundecanoic Acid Self-assembled Monolayer in a Pseudophysiological Solution

Microbially mediated fossil concretions and their characterization by the latest methodologies: a review

The study of well-preserved organic matter (OM) within mineral concretions has provided key insights into depositional and environmental conditions in deep time. Concretions of varied compositions, including carbonate, phosphate, and iron-based minerals, have been found to host exceptionally preserved fossils. Organic geochemical characterization of concretion-encapsulated OM promises valuable new information of fossil preservation, paleoenvironments, and even direct taxonomic information to further illuminate the evolutionary dynamics of our planet and its biota. Full exploitation of this largely untapped geochemical archive, however, requires a sophisticated understanding of the prevalence, formation controls and OM sequestration properties of mineral concretions. Past research has led to the proposal of different models of concretion formation and OM preservation. Nevertheless, the formation mechanisms and controls on OM preservation in concretions remain poorly understood. Here we provide a detailed review of the main types of concretions and formation pathways with a focus on the role of microbes and their metabolic activities. In addition, we provide a comprehensive account of organic geochemical, and complimentary inorganic geochemical, morphological, microbial and paleontological, analytical methods, including recent advancements, relevant to the characterization of concretions and sequestered OM. The application and outcome of several early organic geochemical studies of concretion-impregnated OM are included to demonstrate how this underexploited geo-biological record can provide new insights into the Earth's evolutionary record. This paper also attempts to shed light on the current status of this research and major challenges that lie ahead in the further application of geo-paleo-microbial and organic geochemical research of concretions and their host fossils. Recent efforts to bridge the knowledge and communication gaps in this multidisciplinary research area are also discussed, with particular emphasis on research with significance for interpreting the molecular record in extraordinarily preserved fossils.

The complex role of microbial metabolic activity in fossilization

Bacteria play an important role in the fossilization of soft tissues; their metabolic activities drive the destruction of the tissues and also strongly influence mineralization. Some environmental conditions, such as anoxia, cold temperatures, and high salinity, are considered widely to promote fossilization by modulating bacterial activity. However, bacteria are extremely diverse, and have developed metabolic adaptations to a wide range of stressful conditions. Therefore, the influence of the environment on bacterial activity, and of their metabolic activity on fossilization, is complex. A number of examples illustrate that simple, general assumptions about the role of bacteria in soft tissue fossilization cannot explain all preservational pathways: (i) experimental results show that soft tissues of cnidaria decay less in oxic than anoxic conditions, and in the fossil record are found more commonly in fossil sites deposited under oxic conditions rather than anoxic environments; (ii) siderite concretions, which often entomb soft tissue fossils, precipitate due to a complex mixture of sulfate- and iron reduction by some bacterial species, running counter to original theories that iron reduction is the primary driver of siderite concretion growth; (iii) arthropod brains, now widely accepted to be preserved in many Cambrian fossil sites, are one of the first structures to decay in taphonomic experiments, indicating that their fossilization processes are complex and influenced by bacterial activity. In order to expand our understanding of the complex process of bacterially driven soft tissue fossilization, more research needs to be done, on fossils themselves and in taphonomic experiments, to determine how the complex variation in microbial metabolic activity influences decay and mineralization.

Calcium phosphate scaling during wastewater desalination on oligoamide surfaces mimicking reverse osmosis and nanofiltration membranes

Desalinated domestic wastewater is an indispensable water resource in arid regions; however, its recovery can be limited by calcium phosphate scaling and fouling of the membrane. Here we investigated calcium phosphate mineralization on oligoamide surfaces that mimics reverse osmosis (RO) and nanofiltration (NF) membrane surfaces. We used a solution that simulates desalination of secondary treated domestic wastewater effluents for calcium phosphate mineralization experiments with oligoamide-coated gold surfaces. Attenuated total reflection-Fourier transform infrared spectroscopy and energy dispersive spectrometry showed that calcium phosphate and carbonate precipitated on RO mimetic surfaces. The rate of precipitation on oligoamide sensors was monitored by a quartz crystal microbalance, showing that scaling was more intense on the RO than the NF mimetic surface and that excessive carboxyl functional groups on both surfaces promoted scaling. Filtration experiments of similar solutions with commercial membranes showed that scaling was more intense on the RO membranes than on the NF membranes, which supported the results obtained with the oligoamide model surfaces. The results of this study can be implemented in developing RO and NF membranes to prevent calcium phosphate scaling and consequently lower water-treatment costs of domestic wastewater treatment.

Exceptional Fossil Conservation through Phosphatization

This paper addresses the taphonomic processes responsible for fossil preservation in calcium phosphate, or phosphatization. Aside from silicification and rarer examples of carbonaceous compression, phosphatization is the only taphonomic mode claimed to preserve putative subcellular structures. Because this fossilization window can record such valuable information, a comprehensive understanding of its patterns of occurrence and the geochemical processes involved in the replication of soft tissues are critical endeavors. Fossil phosphatization was most abundant during the latest Neoproterozoic through the early Paleozoic, coinciding with the decline of non-pelletal phosphorite deposits. Its temporal abundance during this timeframe makes it a particularly valuable window for the study of early animal evolution. Several occurrences of phosphatization from the Ediacaran through the Permian Period, including Doushantuo-type preservation of embryo-like fossils and acritarchs, phosphatized gut tracts within Burgess Shale-type carbonaceous compressions, Orsten-type preservation of meiofaunas, and other cases from the later Paleozoic are reviewed. In addition, a comprehensive description of the geochemical controls of calcium phosphate precipitation from seawater is provided, with a focus on the rates of phosphate nucleation and growth, favorable nucleation substrates, and properties of substrate tissue and pore-fluid chemistry. It is hoped that the paleontological and geochemical summaries provided here offer a practical and valuable guide to the Neoproterozoic–Paleozoic phosphatization window.

Easy-to-Fabricate and High-Sensitivity LSPR Type Specific Protein Detection Sensor Using AAO Nano-Pore Size Control

In this study, we developed a pore size/pore area-controlled optical biosensor-based anodic aluminum oxide (AAO) nanostructure. As the pore size of AAO increases, the unit cell of AAO increases, which also increases the non-pore area to which the antibody binds. The increase in the number of antibodies immobilized on the surface of the AAO enables effective detection of trace amounts of antigen, because increased antigen-antibody bonding results in a larger surface refractive index change. High sensitivity was thus achieved through amplification of the interference wave of two vertically-incident reflected waves through the localized surface plasmon resonance phenomenon. The sensitivity of the fabricated sensor was evaluated by measuring the change in wavelength with the change in the refractive index of the device surface, and sensitivity was increased with increasing pore-size and non-pore area. The sensitivity of the fabricated sensor was improved and up to 11.8 ag/mL serum amyloid A1 antigen was detected. In addition, the selectivity of the fabricated sensor was confirmed through a reaction with a heterogeneous substance, C-reactive protein antigen. By using hard anodization during fabrication of the AAO, the fabrication time of the device was reduced and the AAO chip was fabricated quickly and easily.

Surface controlled calcium phosphate formation on three-dimensional bacterial cellulose-based nanofibers

Studies on the early calcium phosphate (Ca-P) formation on nanosized substrates may allow us to understand the biomineralization mechanisms at the molecular level. In this work, in situ formation of Ca-P minerals on bacterial cellulose (BC)-based nanofibers was investigated, for the first time, using the X-ray absorption near-edge structure (XANES) spectroscopy. In addition, the influence of the surface coating of nanofibers on the formation of Ca-P minerals was determined. Combined with XRD analysis, XANES results revealed that the nascent precursor was ACP (amorphous calcium phosphate) which was converted to TCP (β-tricalcium phosphate), then OCP (octacalcium phosphate), and finally to HAP (hydroxyapatite) when phosphorylated BC nanofibers were the templates. However, the formation of nascent precursor and its transformation process varied depending on the nature of the coating material on nanofibrous templates. These results provide new insights into basic mechanisms of mineralization and can lead to the development of novel bioinspired nanostructured materials.

Quartz crystal microbalance for comparison of calcium phosphate precipitation on planar and rough phospholipid bilayers

The planar and rough phospholipid bilayers at the surfaces of quartz crystal and titania-modified quartz crystal were fabricated via the surface modification, respectively, and characterized by scanning electron microscopy (SEM), atomic force microscopy (AFM), cyclic voltammetry (CV) and piezoelectric measurement. The formation of calcium phosphate on planar and rough phospholipid bilayers was investigated in detail using in situ quartz crystal microbalance (QCM) and X-ray diffraction (XRD) techniques. The obtained results showed that the calcium phosphate precipitation was closely related to the roughness and surface potential of phospholipid bilayers. Compared with planar phospholipid bilayers, the rough phospholipid bilayers exhibited a higher deposition rate of calcium phosphate. The presence of anionic phosphatidylserine (PS) in phosphatidylcholine (PC)/PS phospholipid induced PC/PS surface with negative charge, thus showing significantly enhanced calcium phosphate precipitation.

Highly sensitive nano-porous lattice biosensor based on localized surface plasmon resonance and interference

We propose a design for a highly sensitive biosensor based on nanostructured anodized aluminum oxide (AAO) substrates. A gold-deposited AAO substrate exhibits both optical interference and localized surface plasmon resonance (LSPR). In our sensor, application of these disparate optical properties overcomes problems of limited sensitivity, selectivity, and dynamic range seen in similar biosensors. We fabricated uniform periodic nanopore lattice AAO templates by two-step anodizing and assessed their suitability for application in biosensors by characterizing the change in optical response on addition of biomolecules to the AAO template. To determine the suitability of such structures for biosensing applications, we immobilized a layer of C-reactive protein (CRP) antibody on a gold coating atop an AAO template. We then applied a CRP antigen (Ag) atop the immobilized antibody (Ab) layer. The shift in reflectance is interpreted as being caused by the change in refractive index with membrane thickness. Our results confirm that our proposed AAO-based biosensor is highly selective toward detection of CRP antigen, and can measure a change in CRP antigen concentration of 1 fg/ml. This method can provide a simple, fast, and sensitive analysis for protein detection in real-time.

Effect of surface-exposed chemical groups on calcium-phosphate mineralization in water-treatment systems

Calcium-phosphate-scale formation on reverse osmosis (RO) membranes is a major limiting factor for cost-effective desalination of wastewater. We determined the effects of various organic chemical groups found on membrane surfaces on calcium-phosphate scaling. Langmuir films exposing different functional groups were equilibrated with a solution simulating the ionic profile of secondary effluent (SSE). Surface pressure-area (Langmuir) isotherms combined with ICP elemental analyses of the interfacial precipitate suggested acceleration of calcium-phosphate mineralization by the surface functional groups in the order: PO(4) > COOH ∼ NH(2) > COOH:NH(2) (1:1) > OH > ethylene glycol. Immersion of gold-coated silicon wafers self-assembled with different alkanethiols in SSE solution showed formation of a hydroxyapatite precipitate by X-ray diffraction and ATR-IR analysis. Data showed diverse influences of functional groups on mineralization, implying low calcium-phosphate scaling for uncharged surfaces or surfaces coated with both positively and negatively charged groups. This information is valuable for understanding scaling processes, and for designing of novel low-scaling membranes for water desalination.

Biomimetic formation of hydroxyapatite investigated by analytical techniques with high resolution

Morphology, phase and chemical compositions of atmospheric plasma-sprayed (APS) hydroxyapatite (HAp) coatings were investigated by scanning electron microscopy (SEM), X-ray powder diffraction (XRD), proton-induced X-ray emission (PIXE) and Rutherford backscattering spectrometry (RBS). The study involved as-sprayed coatings and coatings incubated in simulated body fluid (rSBF) for up to 56 days. The results obtained using combined contributions from three complementary analytical techniques confirm that secondary Ca-deficient defect hydroxyapatite precipitated by a biomimetic process from the simulated body fluid onto the HAp coating surface after a prolonged induction time. Owing to its sensitivity proton-induced X-ray emission (PIXE) provides information on in vitro resorption of calcium phosphate ceramics and dynamic dissolution/precipitation events occurring during the incubation process.

Zinc oxide growth morphology on self-assembled monolayer modified silver surfaces

Using organic molecules to direct inorganic crystal growth has opened up new avenues for controlled synthesis on surfaces. Combined with soft lithography to form patterned templates, self-assembled monolayers (SAMs) have been shown to be a powerful approach for the assembly of inorganic nanostructures. In this work, we show that the surface free energy of SAM-modified silver, which depends on end groups and deposition method of SAMs, has a dramatic effect on the nucleation and growth of crystalline ZnO, a technologically important material, from supersaturated solutions. For SAMs with inert methyl end groups, ZnO nucleation is inhibited. For SAMs with chemically active (carboxylic or thiol) end groups, the ZnO morphology is found to be three-dimensional nanorods on low-surface-energy surfaces and two-dimensional thin films on high-energy surfaces.

Bismuth Sulfide Thin Films with Low Resistivity on Self-Assembled Monolayers

Using self-assembled monolayers (SAMs), highly crystalline bismuth sulfide thin films with low electrical resistivity have been prepared from aqueous solution at low temperature (40-70 degrees C). The nucleation and growth process of Bi2S3 thin films was investigated in detail by XPS, AES, SEM, XRD, SAED, and HRTEM. Solution conditions have marked effects on the microstructure, growth rate, and mechanism of Bi2S3 films. Increased solution temperature resulted in a higher growth rate and a shorter induction time due to a higher supersaturation degree. In the solution of pH 1.12, homogeneous nucleation and the attachment process dominated the formation of Bi2S3 films. In contrast, at pH 0.47 Bi2S3 thin films were formed via heterogeneous nucleation and growth. The c-axial orientation of bismuthinite films was enhanced with the increase of reaction time. By controlling the solution supersaturation and reaction duration, highly crystalline Bi2S3 films composed of closely packed and coalescent crystallites could be realized, whose dark electrical resistivity could reach as low as 0.014 Omega cm without any post-treatment.

Nucleation and growth of apatite by a self-assembled polycrystalline bioceramic

The formation aspects of a polycrystalline self-assembled bioceramic leading to the nucleation of hard-tissue mineral from a supersaturated solution are discussed. Scanning electron imaging and surface-sensitive interrogations of the nucleated mineral indicated the presence of an intermediate amorphous layer encompassing a rather crystalline phase that formed on niobium oxide (Nb(2)O(5)) microstructures. The crystalline phase was identified from Raman spectroscopy as hydroxyapatite (HAP), while the phosphorous-rich amorphous layer is suggested to have the chemical form CaO-P(2)O(5). In addition, the mechanism favoring HAP nucleation is discussed in terms of the (0 0 2) and (0 0 1) diffraction planes of HAP and Nb(2)O(5), respectively. The small mismatch along several lattice dimensions strongly suggests epitaxy as a dominant mode in the heterogeneous nucleation of HAP. Furthermore, the effectiveness of this mode was shown to critically depend on the self-organization of the Nb(2)O(5) microstructures. Because nucleation does not appear to depend solely on the integrity of Nb(2)O(5) crystals, the self-organization of Nb(2)O(5) crystals also contributes significantly to HAP nucleation. Based on our results, we propose the organized arrangement of bioceramic crystals as a new mode for the bioinspiration of hydroxyapatite and other hard-tissue mineral.

Effect of Phosvitin on the Nucleation and Growth of Calcium Phosphates in Physiological Solutions

The promoting effect of phosvitin on the nucleation of hydroxyapatite (HAP) and the inhibitory effect of phosvitin on the transformation from amorphous calcium phosphate (ACP) to HAP were investigated. Atomic force microscopy observations showed that the nucleation of HAP on collagen substrate was greatly enhanced when the phosvitin was bound on the collagen surface. Nucleated crystals were uniformly distributed with a high nucleation rate on the collagen surface in the presence of phosvitin, while, in the absence of phosvitin, crystals nucleated slowly and were observed only at some particular area. Time-resolved static light scattering measurements revealed that the transformation from ACP to HAP was inhibited when free phosvitin was present in the calcium phosphate solutions. The transformation kinetics in the absence of phosvitin, which is a direct reconstruction of the inner ACP structure to HAP, was changed to heterogeneous growth of HAP on ACP with time.

Directed spatial organization of zinc oxide nanorods

The ability to precisely place nanomaterials at predetermined locations is necessary for realizing applications using these new materials. Using an organic template, we demonstrate directed growth of zinc oxide (ZnO) nanorods on silver films from aqueous solution. Spatial organization of ZnO nanorods in prescribed arbitrary patterns was achieved, with unprecedented control in selectivity, crystal orientation, and nucleation density. Surprisingly, we found that caboxylate endgroups of omega-alkanethiol molecules strongly inhibit ZnO nucleation. The mechanism for this observed selectivity is discussed.