1
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Laisk A, Peterson RB, Oja V. Excitation transfer and quenching in photosystem II, enlightened by carotenoid triplet state in leaves. PHOTOSYNTHESIS RESEARCH 2024; 160:31-44. [PMID: 38502255 DOI: 10.1007/s11120-024-01086-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Accepted: 02/06/2024] [Indexed: 03/21/2024]
Abstract
Accumulation of carotenoid (Car) triplet states was investigated by singlet-triplet annihilation, measured as chlorophyll (Chl) fluorescence quenching in sunflower and lettuce leaves. The leaves were illuminated by Xe flashes of 4 μs length at half-height and 525-565 or 410-490 nm spectral band, maximum intensity 2 mol quanta m-2 s-1, flash photon dose up to 10 μmol m-2 or 4-10 PSII excitations. Superimposed upon the non-photochemically unquenched Fmd state, fluorescence was strongly quenched near the flash maximum (minimum yield Fe), but returned to the Fmd level after 30-50 μs. The fraction of PSII containing a 3Car in equilibrium with singlet excitation was calculated as Te = (Fmd-Fe)/Fmd. Light dependence of Te was a rectangular hyperbola, whose initial slope and plateau were determined by the quantum yields of triplet formation and annihilation and by the triplet lifetime. The intrinsic lifetime was 9 μs, but it was strongly shortened by the presence of O2. The triplet yield was 0.66 without nonphotochemical quenching (NPQ) but approached zero when NP-Quenched fluorescence approached 0.2 Fmd. The results show that in the Fmd state a light-adapted charge-separated PSIIL state is formed (Sipka et al., The Plant Cell 33:1286-1302, 2021) in which Pheo-P680+ radical pair formation is hindered, and excitation is terminated in the antenna by 3Car formation. The results confirm that there is no excitonic connectivity between PSII units. In the PSIIL state each PSII is individually turned into the NPQ state, where excess excitation is quenched in the antenna without 3Car formation.
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Affiliation(s)
- Agu Laisk
- Institute of Technology, University of Tartu, Nooruse St. 1, 50411, Tartu, Estonia.
| | - Richard B Peterson
- The Connecticut Agricultural Experiment Station, 123 Huntington St., New Haven, CT, 06511, USA
| | - Vello Oja
- Institute of Technology, University of Tartu, Nooruse St. 1, 50411, Tartu, Estonia
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2
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Sardar S, Caferri R, Camargo FVA, Capaldi S, Ghezzi A, Dall'Osto L, D'Andrea C, Cerullo G, Bassi R. Site-Directed Mutagenesis of the Chlorophyll-Binding Sites Modulates Excited-State Lifetime and Chlorophyll-Xanthophyll Energy Transfer in the Monomeric Light-Harvesting Complex CP29. J Phys Chem Lett 2024; 15:3149-3158. [PMID: 38478725 DOI: 10.1021/acs.jpclett.3c02900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/22/2024]
Abstract
We combine site-directed mutagenesis with picosecond time-resolved fluorescence and femtosecond transient absorption (TA) spectroscopies to identify excitation energy transfer (EET) processes between chlorophylls (Chls) and xanthophylls (Xant) in the minor antenna complex CP29 assembled inside nanodiscs, which result in quenching. When compared to WT CP29, a longer lifetime was observed in the A2 mutant, missing Chl a612, which closely interacts with Xant Lutein in site L1. Conversely, a shorter lifetime was obtained in the A5 mutant, in which the interaction between Chl a603 and Chl a609 is strengthened, shifting absorption to lower energy and enhancing Chl-Xant EET. Global analysis of TA data indicated that EET from Chl a Qy to a Car dark state S* is active in both the A2 and A5 mutants and that their rate constants are modulated by mutations. Our study provides experimental evidence that multiple Chl-Xant interactions are involved in the quenching activity of CP29.
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Affiliation(s)
- Samim Sardar
- Center for Nano Science and Technology @PoliMi, Istituto Italiano di Tecnologia, Via Rubattino 81, 20134 Milan, Italy
| | - Roberto Caferri
- Dipartimento di Biotecnologie, Università di Verona, Strada Le Grazie 15, 37134 Verona, Italy
| | - Franco V A Camargo
- Istituto di Fotonica e Nanotecnologie, Consiglio Nazionale delle Ricerche, Piazza L. da Vinci 32, 20133 Milano, Italy
| | - Stefano Capaldi
- Dipartimento di Biotecnologie, Università di Verona, Strada Le Grazie 15, 37134 Verona, Italy
| | - Alberto Ghezzi
- Dipartimento di Fisica, Politecnico di Milano, Piazza L. da Vinci 32, 20133 Milano, Italy
| | - Luca Dall'Osto
- Dipartimento di Biotecnologie, Università di Verona, Strada Le Grazie 15, 37134 Verona, Italy
| | - Cosimo D'Andrea
- Center for Nano Science and Technology @PoliMi, Istituto Italiano di Tecnologia, Via Rubattino 81, 20134 Milan, Italy
- Dipartimento di Fisica, Politecnico di Milano, Piazza L. da Vinci 32, 20133 Milano, Italy
| | - Giulio Cerullo
- Istituto di Fotonica e Nanotecnologie, Consiglio Nazionale delle Ricerche, Piazza L. da Vinci 32, 20133 Milano, Italy
- Dipartimento di Fisica, Politecnico di Milano, Piazza L. da Vinci 32, 20133 Milano, Italy
| | - Roberto Bassi
- Dipartimento di Biotecnologie, Università di Verona, Strada Le Grazie 15, 37134 Verona, Italy
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3
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Nguyen HL, Do TN, Zhong K, Akhtar P, Jansen TLC, Knoester J, Caffarri S, Lambrev P, Tan HS. Inter-subunit energy transfer processes in a minimal plant photosystem II supercomplex. SCIENCE ADVANCES 2024; 10:eadh0911. [PMID: 38394196 PMCID: PMC10889429 DOI: 10.1126/sciadv.adh0911] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Accepted: 01/22/2024] [Indexed: 02/25/2024]
Abstract
Photosystem II (PSII) is an integral part of the photosynthesis machinery, in which several light-harvesting complexes rely on inter-complex excitonic energy transfer (EET) processes to channel energy to the reaction center. In this paper, we report on a direct observation of the inter-complex EET in a minimal PSII supercomplex from plants, containing the trimeric light-harvesting complex II (LHCII), the monomeric light-harvesting complex CP26, and the monomeric PSII core complex. Using two-dimensional (2D) electronic spectroscopy, we measure an inter-complex EET timescale of 50 picoseconds for excitations from the LHCII-CP26 peripheral antenna to the PSII core. The 2D electronic spectra also reveal that the transfer timescale is nearly constant over the pump spectrum of 600 to 700 nanometers. Structure-based calculations reveal the contribution of each antenna complex to the measured inter-complex EET time. These results provide a step in elucidating the full inter-complex energy transfer network of the PSII machinery.
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Affiliation(s)
- Hoang Long Nguyen
- School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
- Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, Netherlands
| | - Thanh Nhut Do
- School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
| | - Kai Zhong
- School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
- Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, Netherlands
| | - Parveen Akhtar
- ELI-ALPS, ELI-HU Nonprofit Limited, Wolfgang Sandner utca 3, Szeged 6728, Hungary
- HUN-REN Biological Research Centre, Szeged, Temesvári körút 62, Szeged 6726, Hungary
| | - Thomas L. C. Jansen
- Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, Netherlands
| | - Jasper Knoester
- Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, Netherlands
- Faculty of Science, Leiden University, Einsteinweg 55, NL-2300 RA Leiden, Netherlands
| | - Stefano Caffarri
- Aix Marseille Université, CEA, CNRS, BIAM, LGBP, 13009 Marseille, France
| | - Petar Lambrev
- HUN-REN Biological Research Centre, Szeged, Temesvári körút 62, Szeged 6726, Hungary
| | - Howe-Siang Tan
- School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
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4
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Gray C, Kailas L, Adams PG, Duffy CDP. Unravelling the fluorescence kinetics of light-harvesting proteins with simulated measurements. BIOCHIMICA ET BIOPHYSICA ACTA. BIOENERGETICS 2024; 1865:149004. [PMID: 37699505 DOI: 10.1016/j.bbabio.2023.149004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Revised: 08/24/2023] [Accepted: 08/31/2023] [Indexed: 09/14/2023]
Abstract
The plant light-harvesting pigment-protein complex LHCII is the major antenna sub-unit of PSII and is generally (though not universally) accepted to play a role in photoprotective energy dissipation under high light conditions, a process known Non-Photochemical Quenching (NPQ). The underlying mechanisms of energy trapping and dissipation within LHCII are still debated. Various models have been proposed for the underlying molecular detail of NPQ, but they are often based on different interpretations of very similar transient absorption measurements of isolated complexes. Here we present a simulated measurement of the fluorescence decay kinetics of quenched LHCII aggregates to determine whether this relatively simple measurement can discriminate between different potential NPQ mechanisms. We simulate not just the underlying physics (excitation, energy migration, quenching and singlet-singlet annihilation) but also the signal detection and typical experimental data analysis. Comparing this to a selection of published fluorescence decay kinetics we find that: (1) Different proposed quenching mechanisms produce noticeably different fluorescence kinetics even at low (annihilation free) excitation density, though the degree of difference is dependent on pulse width. (2) Measured decay kinetics are consistent with most LHCII trimers becoming relatively slow excitation quenchers. A small sub-population of very fast quenchers produces kinetics which do not resemble any observed measurement. (3) It is necessary to consider at least two distinct quenching mechanisms in order to accurately reproduce experimental kinetics, supporting the idea that NPQ is not a simple binary switch.
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Affiliation(s)
- Callum Gray
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End, London E1 4NS, United Kingdom
| | - Lekshmi Kailas
- School of Physics and Astronomy, University of Leeds, Leeds LS2 9JT, United Kingdom
| | - Peter G Adams
- School of Physics and Astronomy, University of Leeds, Leeds LS2 9JT, United Kingdom
| | - Christopher D P Duffy
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End, London E1 4NS, United Kingdom.
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5
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Wiethorn ZR, Hunter KE, Zuehlsdorff TJ, Montoya-Castillo A. Beyond the Condon limit: Condensed phase optical spectra from atomistic simulations. J Chem Phys 2023; 159:244114. [PMID: 38153146 DOI: 10.1063/5.0180405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 12/06/2023] [Indexed: 12/29/2023] Open
Abstract
While dark transitions made bright by molecular motions determine the optoelectronic properties of many materials, simulating such non-Condon effects in condensed phase spectroscopy remains a fundamental challenge. We derive a Gaussian theory to predict and analyze condensed phase optical spectra beyond the Condon limit. Our theory introduces novel quantities that encode how nuclear motions modulate the energy gap and transition dipole of electronic transitions in the form of spectral densities. By formulating the theory through a statistical framework of thermal averages and fluctuations, we circumvent the limitations of widely used microscopically harmonic theories, allowing us to tackle systems with generally anharmonic atomistic interactions and non-Condon fluctuations of arbitrary strength. We show how to calculate these spectral densities using first-principles simulations, capturing realistic molecular interactions and incorporating finite-temperature, disorder, and dynamical effects. Our theory accurately predicts the spectra of systems known to exhibit strong non-Condon effects (phenolate in various solvents) and reveals distinct mechanisms for electronic peak splitting: timescale separation of modes that tune non-Condon effects and spectral interference from correlated energy gap and transition dipole fluctuations. We further introduce analysis tools to identify how intramolecular vibrations, solute-solvent interactions, and environmental polarization effects impact dark transitions. Moreover, we prove an upper bound on the strength of cross correlated energy gap and transition dipole fluctuations, thereby elucidating a simple condition that a system must follow for our theory to accurately predict its spectrum.
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Affiliation(s)
- Zachary R Wiethorn
- Department of Chemistry, University of Colorado Boulder, Boulder, Colorado 80309, USA
| | - Kye E Hunter
- Department of Chemistry, Oregon State University, Corvallis, Oregon 97331, USA
| | - Tim J Zuehlsdorff
- Department of Chemistry, Oregon State University, Corvallis, Oregon 97331, USA
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6
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Götze JP, Lokstein H. Excitation Energy Transfer between Higher Excited States of Photosynthetic Pigments: 1. Carotenoids Intercept and Remove B Band Excitations. ACS OMEGA 2023; 8:40005-40014. [PMID: 37929138 PMCID: PMC10620780 DOI: 10.1021/acsomega.3c05895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Accepted: 09/21/2023] [Indexed: 11/07/2023]
Abstract
Chlorophylls (Chls) are known for fast, subpicosecond internal conversion (IC) from ultraviolet/blue-absorbing ("B" or "Soret" states) to the energetically lower, red light-absorbing Q states. Consequently, excitation energy transfer (EET) in photosynthetic pigment-protein complexes involving the B states has so far not been considered. We present, for the first time, a theoretical framework for the existence of B-B EET in tightly coupled Chl aggregates such as photosynthetic pigment-protein complexes. We show that according to a Förster resonance energy transport (FRET) scheme, unmodulated B-B EET has an unexpectedly high range. Unsuppressed, it could pose an existential threat: the damage potential of blue light for photochemical reaction centers (RCs) is well-known. This insight reveals so far undescribed roles for carotenoids (Crts, this article) and Chl b (next article in this series) of possibly vital importance. Our model system is the photosynthetic antenna pigment-protein complex (CP29). Here, we show that the B → Q IC is assisted by the optically allowed Crt state (S2): The sequence is B → S2 (Crt, unrelaxed) → S2 (Crt, relaxed) → Q. This sequence has the advantage of preventing ∼39% of Chl-Chl B-B EET since the Crt S2 state is a highly efficient FRET acceptor. The B-B EET range and thus the likelihood of CP29 to forward potentially harmful B excitations toward the RC are thus reduced. In contrast to the B band of Chls, most Crt energy donation is energetically located near the Q band, which allows for 74/80% backdonation (from lutein/violaxanthin) to Chls. Neoxanthin, on the other hand, likely donates in the B band region of Chl b, with 76% efficiency. Crts thus act not only in their currently proposed photoprotective roles but also as a crucial building block for any system that could otherwise deliver harmful "blue" excitations to the RCs.
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Affiliation(s)
- Jan P. Götze
- Institut
für Chemie und Biochemie, Fachbereich Biologie Chemie Pharmazie, Freie Universität Berlin, Arnimallee 22, 14195 Berlin, Germany
| | - Heiko Lokstein
- Department
of Chemical Physics and Optics, Charles
University, Ke Karlovu
3, 121 16 Prague, Czech Republic
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7
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Götze JP, Maity S, Kleinekathöfer U. Incoherent Energy Transfer between the Baseplate and FMO Protein Explored at Ideal Geometries. J Phys Chem B 2023; 127:7829-7838. [PMID: 37691433 DOI: 10.1021/acs.jpcb.3c02568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/12/2023]
Abstract
The Förster resonance energy transfer (FRET) between the Fenna-Matthews-Olson (FMO) protein complex and the chlorosomal baseplate (CBP) is investigated by using an idealized model. This simplified model is based on crystal structure and molecular dynamics conformations. Some of the further input, such as the transition dipole moments, was extracted from earlier molecular-level simulations. The resulting model mimics the effects of the relative position between the CBP and the FMO complex on the corresponding FRET efficiency under ideal conditions, involving about 1.3 billion FRET calculations per investigated model. In this idealized model and employing some approximations, it is found that FRET efficiency is almost completely independent of the FMO trimer orientation (displacement, distance, and rotation), despite FMO and CBP being highly structured complexes. Even removing individual FMO BChl triples will only reduce the FRET efficiency by up to 8.6%. An FMO containing only the least efficient BChl triple will retain about 25% of the FRET efficiency of a full FMO complex. In addition to its proposed function as an energetic funnel, FMO is thus identified to act as a highly robust spatial funnel for CBP excitation harvesting, independent of the mutual CBP-FMO orientation.
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Affiliation(s)
- Jan P Götze
- Institut für Chemie und Biochemie, Physikalische und Theoretische Chemie, Freie Universität Berlin, Arnimallee 22, 14195 Berlin, Germany
| | - Sayan Maity
- School of Science, Constructor University, Campusring 1, 28759 Bremen, Germany
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8
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Su X, Yue X, Kong M, Xie Z, Yan J, Ma W, Wang Y, Zhao J, Zhang X, Liu M. Leaf Color Classification and Expression Analysis of Photosynthesis-Related Genes in Inbred Lines of Chinese Cabbage Displaying Minor Variations in Dark-Green Leaves. PLANTS (BASEL, SWITZERLAND) 2023; 12:plants12112124. [PMID: 37299103 DOI: 10.3390/plants12112124] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Revised: 05/20/2023] [Accepted: 05/21/2023] [Indexed: 06/12/2023]
Abstract
The leaves of the Chinese cabbage which is most widely consumed come in a wide variety of colors. Leaves that are dark green can promote photosynthesis, effectively improving crop yield, and therefore hold important application and cultivation value. In this study, we selected nine inbred lines of Chinese cabbage displaying slight differences in leaf color, and graded the leaf color using the reflectance spectra. We clarified the differences in gene sequences and the protein structure of ferrochelatase 2 (BrFC2) among the nine inbred lines, and used qRT-PCR to analyze the expression differences of photosynthesis-related genes in inbred lines with minor variations in dark-green leaves. We found expression differences among the inbred lines of Chinese cabbage in photosynthesis-related genes involved in the porphyrin and chlorophyll metabolism, as well as in photosynthesis and photosynthesis-antenna protein pathway. Chlorophyll b content was significantly positively correlated with the expression of PsbQ, LHCA1_1 and LHCB6_1, while chlorophyll a content was significantly negatively correlated with the expression PsbQ, LHCA1_1 and LHCA1_2. Our results provide an empirical basis for the precise identification of candidate genes and a better understanding of the molecular mechanisms responsible for the production of dark-green leaves in Chinese cabbage.
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Affiliation(s)
- Xiangjie Su
- State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, Baoding 071000, China
| | - Xiaonan Yue
- State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, Baoding 071000, China
| | - Mingyu Kong
- State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, Baoding 071000, China
| | - Ziwei Xie
- State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, Baoding 071000, China
| | - Jinghui Yan
- State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, Baoding 071000, China
| | - Wei Ma
- State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, Baoding 071000, China
| | - Yanhua Wang
- State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, Baoding 071000, China
| | - Jianjun Zhao
- State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, Baoding 071000, China
| | - Xiaomeng Zhang
- State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, Baoding 071000, China
| | - Mengyang Liu
- State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, Baoding 071000, China
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9
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Malý P, Lüttig J, Rose PA, Turkin A, Lambert C, Krich JJ, Brixner T. Separating single- from multi-particle dynamics in nonlinear spectroscopy. Nature 2023; 616:280-287. [PMID: 36973449 DOI: 10.1038/s41586-023-05846-7] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Accepted: 02/15/2023] [Indexed: 03/29/2023]
Abstract
Quantum states depend on the coordinates of all their constituent particles, with essential multi-particle correlations. Time-resolved laser spectroscopy1 is widely used to probe the energies and dynamics of excited particles and quasiparticles such as electrons and holes2,3, excitons4-6, plasmons7, polaritons8 or phonons9. However, nonlinear signals from single- and multiple-particle excitations are all present simultaneously and cannot be disentangled without a priori knowledge of the system4,10. Here, we show that transient absorption-the most commonly used nonlinear spectroscopy-with N prescribed excitation intensities allows separation of the dynamics into N increasingly nonlinear contributions; in systems well-described by discrete excitations, these N contributions systematically report on zero to N excitations. We obtain clean single-particle dynamics even at high excitation intensities and can systematically increase the number of interacting particles, infer their interaction energies and reconstruct their dynamics, which are not measurable via conventional means. We extract single- and multiple-exciton dynamics in squaraine polymers11,12 and, contrary to common assumption6,13, we find that the excitons, on average, meet several times before annihilating. This surprising ability of excitons to survive encounters is important for efficient organic photovoltaics14,15. As we demonstrate on five diverse systems, our procedure is general, independent of the measured system or type of observed (quasi)particle and straightforward to implement. We envision future applicability in the probing of (quasi)particle interactions in such diverse areas as plasmonics7, Auger recombination2 and exciton correlations in quantum dots5,16,17, singlet fission18, exciton interactions in two-dimensional materials19 and in molecules20,21, carrier multiplication22, multiphonon scattering9 or polariton-polariton interaction8.
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Affiliation(s)
- Pavel Malý
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Würzburg, Germany.
- Faculty of Mathematics and Physics, Charles University, Prague, Czech Republic.
| | - Julian Lüttig
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Würzburg, Germany
| | - Peter A Rose
- Department of Physics, University of Ottawa, Ottawa, Ontario, Canada
| | - Arthur Turkin
- Institut für Organische Chemie, Universität Würzburg, Würzburg, Germany
| | - Christoph Lambert
- Institut für Organische Chemie, Universität Würzburg, Würzburg, Germany
- Center for Nanosystems Chemistry (CNC), Universität Würzburg, Würzburg, Germany
| | - Jacob J Krich
- Department of Physics, University of Ottawa, Ottawa, Ontario, Canada.
- School of Electrical Engineering and Computer Science, University of Ottawa, Ottawa, Ontario, Canada.
| | - Tobias Brixner
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Würzburg, Germany.
- Center for Nanosystems Chemistry (CNC), Universität Würzburg, Würzburg, Germany.
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10
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Sen S, Senjean B, Visscher L. Characterization of excited states in time-dependent density functional theory using localized molecular orbitals. J Chem Phys 2023; 158:054115. [PMID: 36754801 DOI: 10.1063/5.0137729] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
Abstract
Localized molecular orbitals are often used for the analysis of chemical bonds, but they can also serve to efficiently and comprehensibly compute linear response properties. While conventional canonical molecular orbitals provide an adequate basis for the treatment of excited states, a chemically meaningful identification of the different excited-state processes is difficult within such a delocalized orbital basis. In this work, starting from an initial set of supermolecular canonical molecular orbitals, we provide a simple one-step top-down embedding procedure for generating a set of orbitals, which are localized in terms of the supermolecule but delocalized over each subsystem composing the supermolecule. Using an orbital partitioning scheme based on such sets of localized orbitals, we further present a procedure for the construction of local excitations and charge-transfer states within the linear response framework of time-dependent density functional theory (TDDFT). This procedure provides direct access to approximate diabatic excitation energies and, under the Tamm-Dancoff approximation, also their corresponding electronic couplings-quantities that are of primary importance in modeling energy transfer processes in complex biological systems. Our approach is compared with a recently developed diabatization procedure based on subsystem TDDFT using projection operators, which leads to a similar set of working equations. Although both of these methods differ in the general localization strategies adopted and the type of basis functions (Slaters vs Gaussians) employed, an overall decent agreement is obtained.
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Affiliation(s)
- Souloke Sen
- Division of Theoretical Chemistry, Faculty of Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1083, 1081 HV Amsterdam, The Netherlands
| | - Bruno Senjean
- ICGM, Université de Montpellier, CNRS, ENSCM, Montpellier, France
| | - Lucas Visscher
- Division of Theoretical Chemistry, Faculty of Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1083, 1081 HV Amsterdam, The Netherlands
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11
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Elias E, Liguori N, Croce R. The origin of pigment-binding differences in CP29 and LHCII: the role of protein structure and dynamics. PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES : OFFICIAL JOURNAL OF THE EUROPEAN PHOTOCHEMISTRY ASSOCIATION AND THE EUROPEAN SOCIETY FOR PHOTOBIOLOGY 2023:10.1007/s43630-023-00368-7. [PMID: 36740636 DOI: 10.1007/s43630-023-00368-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Accepted: 01/13/2023] [Indexed: 02/07/2023]
Abstract
The first step of photosynthesis in plants is performed by the light-harvesting complexes (LHC), a large family of pigment-binding proteins embedded in the photosynthetic membranes. These complexes are conserved across species, suggesting that each has a distinct role. However, they display a high degree of sequence homology and their static structures are almost identical. What are then the structural features that determine their different properties? In this work, we compared the two best-characterized LHCs of plants: LHCII and CP29. Using molecular dynamics simulations, we could rationalize the difference between them in terms of pigment-binding properties. The data also show that while the loops between the helices are very flexible, the structure of the transmembrane regions remains very similar in the crystal and the membranes. However, the small structural differences significantly affect the excitonic coupling between some pigment pairs. Finally, we analyzed in detail the structure of the long N-terminus of CP29, showing that it is structurally stable and it remains on top of the membrane even in the absence of other proteins. Although the structural changes upon phosphorylation are minor, they can explain the differences in the absorption properties of the pigments observed experimentally.
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Affiliation(s)
- Eduard Elias
- Department of Physics and Astronomy, Faculty of Science, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
| | - Nicoletta Liguori
- Department of Physics and Astronomy, Faculty of Science, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
| | - Roberta Croce
- Department of Physics and Astronomy, Faculty of Science, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
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12
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Sun M, Zhao C, Shang H, Hao Y, Han L, Qian K, White JC, Ma C, Xing B. ZnO quantum dots outperform nanoscale and bulk particles for enhancing tomato (Solanum lycopersicum) growth and nutritional values. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 857:159330. [PMID: 36228785 DOI: 10.1016/j.scitotenv.2022.159330] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2022] [Revised: 10/05/2022] [Accepted: 10/05/2022] [Indexed: 06/16/2023]
Abstract
Tomato (Solanum lycopersicum) seedlings were exposed by foliar or root applications to Zn in different nanoscale and non-nanoscale forms (40 mg Zn/L) under hydroponic conditions for 15 days. Under foliar exposure, ZnO QDs significantly promoted tomato growth, while ZnO NPs and BPs had lower impacts. ZnO QDs increased fresh weight and plant height by 42.02 % and 21.10 % relative to the untreated controls, respectively. The ionic control (ZnSO4·7H2O, 176.6 mg/L) decreased fresh weight by 39.31 %. ZnO QDs also significantly increased the Chla/Chlb ratio, as well as carotenoids and protein content by 7.70 %, 8.90 % and 26.33 %, respectively, over the untreated controls, suggesting improvement in seedling photosynthetic performance. Antioxidant enzyme (POD, PPO and PAL) activities in ZnO QDs treated shoots were significantly decreased by 31.1 %, 17.8 % and 48.3 %, respectively, indicating no overt oxidative damage from exposure. Importantly, the translocation factor of Zn (TFZn) in the foliar exposure of the ZnO QDs treatment was 73.2 %, 97.1 % and 276.9 % greater than the NPs, BPs, and ionic controls, respectively. Overall, these findings clearly demonstrate that foliar spray of nanoscale nutrients at the appropriate concentration and size can significantly increase crop growth and be a sustainable approach to nano-enabled agriculture.
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Affiliation(s)
- Min Sun
- Key Laboratory for City Cluster Environmental Safety and Green Development of the Ministry of Education, School of Ecology, Environment and Resources, Guangdong University of Technology, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Water Quality Improvement and Ecological Restoration for Watersheds, Institute of Environmental and Ecological Engineering, Guangdong University of Technology, Guangzhou 510006, China
| | - Chenchen Zhao
- College of Plant Protection, Southwest University, Chongqing 400715, China
| | - Heping Shang
- Key Laboratory for City Cluster Environmental Safety and Green Development of the Ministry of Education, School of Ecology, Environment and Resources, Guangdong University of Technology, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Water Quality Improvement and Ecological Restoration for Watersheds, Institute of Environmental and Ecological Engineering, Guangdong University of Technology, Guangzhou 510006, China
| | - Yi Hao
- Key Laboratory for City Cluster Environmental Safety and Green Development of the Ministry of Education, School of Ecology, Environment and Resources, Guangdong University of Technology, Guangzhou 510006, China
| | - Lanfang Han
- Key Laboratory for City Cluster Environmental Safety and Green Development of the Ministry of Education, School of Ecology, Environment and Resources, Guangdong University of Technology, Guangzhou 510006, China
| | - Kun Qian
- College of Plant Protection, Southwest University, Chongqing 400715, China.
| | - Jason C White
- The Connecticut Agricultural Experiment Station, New Haven, CT 06504, USA
| | - Chuanxin Ma
- Key Laboratory for City Cluster Environmental Safety and Green Development of the Ministry of Education, School of Ecology, Environment and Resources, Guangdong University of Technology, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Water Quality Improvement and Ecological Restoration for Watersheds, Institute of Environmental and Ecological Engineering, Guangdong University of Technology, Guangzhou 510006, China.
| | - Baoshan Xing
- Stockbridge School of Agriculture, University of Massachusetts Amherst, Amherst, MA 01003, USA
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13
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Sindhu A, Jain A. Coherence and Efficient Energy Transfer in Molecular Wires: Insights from Surface Hopping Simulations. Chemphyschem 2022; 23:e202200392. [PMID: 35944188 DOI: 10.1002/cphc.202200392] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Revised: 08/09/2022] [Indexed: 01/04/2023]
Abstract
Understanding the dynamics of electronic energy transfer through a molecular wire is essential to understand the working of natural processes like photosynthesis. We investigate simpler 2 and 3-site model Hamiltonians in this work to understand the importance of coherence to efficient energy transfer. We compare the results of surface hopping simulation with that of numerically exact results and rate theories. Different parameters are analyzed, motivated by a photosynthetic molecular wire - the FMO complex. A comparison of results from different theories shows that coherence can play an important role towards efficient energy transfer for certain parameters. When these coherences are important, even small couplings (of the order of 5 cm-1 ) in the Hamiltonian can significantly affect rates. Surface hopping simulations capture all the results correctly qualitatively. Rate theories, on the other hand, can differ significantly from numerically exact results when coherences become important. The results of this work should provide design guidelines for efficient energy transfer in molecular wires.
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14
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Li DH, Wang W, Zhou C, Zhang Y, Zhao S, Zhou YM, Gao RY, Yao HD, Fu LM, Wang P, Shen JR, Kuang T, Zhang JP. Photoinduced chlorophyll charge transfer state identified in the light-harvesting complex II from a marine green alga Bryopsis corticulans. iScience 2022; 26:105761. [PMID: 36594012 PMCID: PMC9804108 DOI: 10.1016/j.isci.2022.105761] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Revised: 10/10/2022] [Accepted: 12/06/2022] [Indexed: 12/12/2022] Open
Abstract
The light-harvesting complex II of Bryopsis corticulans (B-LHCII), a green alga, differs from that of spinach (S-LHCII) in chlorophyll (Chl) and carotenoid (Car) compositions. We investigated ultrafast excitation dynamics of B-LHCII with visible-to-near infrared time-resolved absorption spectroscopy. Absolute fluorescence quantum yield (Φ FL) of LHCII and spectroelectrochemical (SEC) spectra of Chl a and b were measured to assist the spectral analysis. Red-light excitation at Chl Qy-band, but not Car-band, induced transient features resembling the characteristic SEC spectra of Chl a ⋅+ and Chl b ⋅-, indicating ultrafast photogeneration of Chl-Chl charge transfer (CT) species; Φ FL and 3Car∗ declined whereas CT species increased upon prolonging excitation wavelength, showing positive correlation of 1Chl∗ deactivation with Chl-Chl CT formation. Moreover, ultrafast Chl b-to-Chl a and Car-to-Chl singlet excitation transfer were illustrated. The red-light induction of Chl-Chl CT species, as also observed for S-LHCII, is considered a general occurrence for LHCIIs in light-harvesting form.
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Affiliation(s)
- Dan-Hong Li
- Key Laboratory of Advanced Light Conversion Materials and Biophotonics, Department of Chemistry, Renmin University of China, Beijing 100872, China,School of Biological and Behavioural Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK
| | - Wenda Wang
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Cuicui Zhou
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Yan Zhang
- Key Laboratory of Advanced Light Conversion Materials and Biophotonics, Department of Chemistry, Renmin University of China, Beijing 100872, China
| | - Songhao Zhao
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Yi-Ming Zhou
- Key Laboratory of Advanced Light Conversion Materials and Biophotonics, Department of Chemistry, Renmin University of China, Beijing 100872, China
| | - Rong-Yao Gao
- Key Laboratory of Advanced Light Conversion Materials and Biophotonics, Department of Chemistry, Renmin University of China, Beijing 100872, China
| | - Hai-Dan Yao
- Key Laboratory of Advanced Light Conversion Materials and Biophotonics, Department of Chemistry, Renmin University of China, Beijing 100872, China
| | - Li-Min Fu
- Key Laboratory of Advanced Light Conversion Materials and Biophotonics, Department of Chemistry, Renmin University of China, Beijing 100872, China
| | - Peng Wang
- Key Laboratory of Advanced Light Conversion Materials and Biophotonics, Department of Chemistry, Renmin University of China, Beijing 100872, China
| | - Jian-Ren Shen
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China,Research Institute for Interdisciplinary Science, and Graduate School of Natural Science and Technology, Okayama University, Okayama 700-8530, Japan
| | - Tingyun Kuang
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China,Corresponding author
| | - Jian-Ping Zhang
- Key Laboratory of Advanced Light Conversion Materials and Biophotonics, Department of Chemistry, Renmin University of China, Beijing 100872, China,Corresponding author
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15
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Sardar S, Caferri R, Camargo FVA, Pamos Serrano J, Ghezzi A, Capaldi S, Dall’Osto L, Bassi R, D’Andrea C, Cerullo G. Molecular mechanisms of light harvesting in the minor antenna CP29 in near-native membrane lipidic environment. J Chem Phys 2022; 156:205101. [DOI: 10.1063/5.0087898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
CP29, a chlorophyll a/ b-xanthophyll binding protein, bridges energy transfer between the major LHCII antenna complexes and photosystem II reaction centers. It hosts one of the two identified quenching sites, making it crucial for regulated photoprotection mechanisms. Until now, the photophysics of CP29 has been studied on the purified protein in detergent solutions since spectrally overlapping signals affect in vivo measurements. However, the protein in detergent assumes non-native conformations compared to its physiological state in the thylakoid membrane. Here, we report a detailed photophysical study on CP29 inserted in discoidal lipid bilayers, known as nanodiscs, which mimic the native membrane environment. Using picosecond time-resolved fluorescence and femtosecond transient absorption (TA), we observed shortening of the Chl fluorescence lifetime with a decrease of the carotenoid triplet formation yield for CP29 in nanodiscs as compared to the protein in detergent. Global analysis of TA data suggests a 1Chl* quenching mechanism dependent on excitation energy transfer to a carotenoid dark state, likely the proposed S*, which is believed to be formed due to a carotenoid conformational change affecting the S1 state. We suggest that the accessibility of the S* state in different local environments plays a key role in determining the quenching of Chl excited states. In vivo, non-photochemical quenching is activated by de-epoxidation of violaxanthin into zeaxanthin. CP29-zeaxanthin in nanodiscs further shortens the Chl lifetime, which underlines the critical role of zeaxanthin in modulating photoprotection activity.
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Affiliation(s)
- Samim Sardar
- Center for Nano Science and Technology@PoliMi, Istituto Italiano di Tecnologia, 20133 Milan, Italy
| | - Roberto Caferri
- Dipartimento di Biotecnologie, Università di Verona, Strada Le Grazie 15, 37134 Verona, Italy
| | - Franco V. A. Camargo
- Istituto di Fotonica e Nanotecnologie, Consiglio Nazionale delle Ricerche, Piazza L. da Vinci 32, 20133 Milano, Italy
| | - Javier Pamos Serrano
- Dipartimento di Fisica, Politecnico di Milano, Piazza L. da Vinci 32, 20133 Milano, Italy
| | - Alberto Ghezzi
- Dipartimento di Fisica, Politecnico di Milano, Piazza L. da Vinci 32, 20133 Milano, Italy
| | - Stefano Capaldi
- Dipartimento di Biotecnologie, Università di Verona, Strada Le Grazie 15, 37134 Verona, Italy
| | - Luca Dall’Osto
- Dipartimento di Biotecnologie, Università di Verona, Strada Le Grazie 15, 37134 Verona, Italy
| | - Roberto Bassi
- Dipartimento di Biotecnologie, Università di Verona, Strada Le Grazie 15, 37134 Verona, Italy
| | - Cosimo D’Andrea
- Center for Nano Science and Technology@PoliMi, Istituto Italiano di Tecnologia, 20133 Milan, Italy
- Dipartimento di Fisica, Politecnico di Milano, Piazza L. da Vinci 32, 20133 Milano, Italy
| | - Giulio Cerullo
- Istituto di Fotonica e Nanotecnologie, Consiglio Nazionale delle Ricerche, Piazza L. da Vinci 32, 20133 Milano, Italy
- Dipartimento di Fisica, Politecnico di Milano, Piazza L. da Vinci 32, 20133 Milano, Italy
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16
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Waly SM, Karlsson JKG, Waddell PG, Benniston AC, Harriman A. Light-Harvesting Crystals Formed from BODIPY-Proline Biohybrid Conjugates: Antenna Effects and Excitonic Coupling. J Phys Chem A 2022; 126:1530-1541. [PMID: 35230124 PMCID: PMC9097531 DOI: 10.1021/acs.jpca.2c00035] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
![]()
A boron dipyrromethene (BODIPY) derivative
bearing a cis-proline residue at the meso-position crystallizes
in the form of platelets with strong (i.e., ΦF =
0.34) red fluorescence, but the absorption and emission spectra differ
markedly from those for dilute solutions. A key building block for
the crystal is a pseudo-dimer where hydrogen bonding
aligns the proline groups and separates the terminal chromophores
by ca. 25 Å. Comparison with a covalently linked bichromophore
suggests that one-dimensional (1D) excitonic coupling between the
terminals is too small to perturb the optical properties. However,
accretion of the pseudo-dimer forms narrow channels
possessing a high density of chromophores. The resultant absorption
spectrum exhibits strong excitonic splitting, which can be explained
quantitatively using the extended dipole approach and allowing for
coupling between ca. 30 BODIPY units. Fluorescence, which decays with
a lifetime of 2.2 ns, is assigned to a delocalized and (slightly)
super-radiant BODIPY dimer situated at the interface and populated
via electronic energy transfer from the interior.
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17
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Hancock AM, Son M, Nairat M, Wei T, Jeuken LJC, Duffy CDP, Schlau-Cohen GS, Adams PG. Ultrafast energy transfer between lipid-linked chromophores and plant light-harvesting complex II. Phys Chem Chem Phys 2021; 23:19511-19524. [PMID: 34524278 PMCID: PMC8442836 DOI: 10.1039/d1cp01628h] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Light-Harvesting Complex II (LHCII) is a membrane protein found in plant chloroplasts that has the crucial role of absorbing solar energy and subsequently performing excitation energy transfer to the reaction centre subunits of Photosystem II. LHCII provides strong absorption of blue and red light, however, it has minimal absorption in the green spectral region where solar irradiance is maximal. In a recent proof-of-principle study, we enhanced the absorption in this spectral range by developing a biohybrid system where LHCII proteins together with lipid-linked Texas Red (TR) chromophores were assembled into lipid membrane vesicles. The utility of these systems was limited by significant LHCII quenching due to protein-protein interactions and heterogeneous lipid structures. Here, we organise TR and LHCII into a lipid nanodisc, which provides a homogeneous, well-controlled platform to study the interactions between TR molecules and single LHCII complexes. Fluorescence spectroscopy determined that TR-to-LHCII energy transfer has an efficiency of at least 60%, resulting in a 262% enhancement of LHCII fluorescence in the 525-625 nm range, two-fold greater than in the previous system. Ultrafast transient absorption spectroscopy revealed two time constants of 3.7 and 128 ps for TR-to-LHCII energy transfer. Structural modelling and theoretical calculations indicate that these timescales correspond to TR-lipids that are loosely- or tightly-associated with the protein, respectively, with estimated TR-to-LHCII separations of ∼3.5 nm and ∼1 nm. Overall, we demonstrate that a nanodisc-based biohybrid system provides an idealised platform to explore the photophysical interactions between extrinsic chromophores and membrane proteins with potential applications in understanding more complex natural or artificial photosynthetic systems.
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Affiliation(s)
- Ashley M Hancock
- School of Physics and Astronomy, University of Leeds, Leeds LS2 9JT, UK. .,Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, UK
| | - Minjung Son
- Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Ave, Cambridge, MA 02139, USA.
| | - Muath Nairat
- Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Ave, Cambridge, MA 02139, USA.
| | - Tiejun Wei
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK
| | - Lars J C Jeuken
- Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, UK.,Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK.,Leiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands
| | - Christopher D P Duffy
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK
| | - Gabriela S Schlau-Cohen
- Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Ave, Cambridge, MA 02139, USA.
| | - Peter G Adams
- School of Physics and Astronomy, University of Leeds, Leeds LS2 9JT, UK. .,Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, UK
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18
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Elias E, Liguori N, Saga Y, Schäfers J, Croce R. Harvesting Far-Red Light with Plant Antenna Complexes Incorporating Chlorophyll d. Biomacromolecules 2021; 22:3313-3322. [PMID: 34269578 PMCID: PMC8356222 DOI: 10.1021/acs.biomac.1c00435] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2021] [Revised: 06/28/2021] [Indexed: 11/28/2022]
Abstract
Increasing the absorption cross section of plants by introducing far-red absorbing chlorophylls (Chls) has been proposed as a strategy to boost crop yields. To make this strategy effective, these Chls should bind to the photosynthetic complexes without altering their functional architecture. To investigate if plant-specific antenna complexes can provide the protein scaffold to accommodate these Chls, we have reconstituted the main light-harvesting complex (LHC) of plants LHCII in vitro and in silico, with Chl d. The results demonstrate that LHCII can bind Chl d in a number of binding sites, shifting the maximum absorption ∼25 nm toward the red with respect to the wild-type complex (LHCII with Chl a and b) while maintaining the native LHC architecture. Ultrafast spectroscopic measurements show that the complex is functional in light harvesting and excitation energy transfer. Overall, we here demonstrate that it is possible to obtain plant LHCs with enhanced far-red absorption and intact functional properties.
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Affiliation(s)
- Eduard Elias
- Department
of Physics and Astronomy and Institute for Lasers, Life and Biophotonics,
Faculty of Sciences, VU University Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
| | - Nicoletta Liguori
- Department
of Physics and Astronomy and Institute for Lasers, Life and Biophotonics,
Faculty of Sciences, VU University Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
| | - Yoshitaka Saga
- Department
of Physics and Astronomy and Institute for Lasers, Life and Biophotonics,
Faculty of Sciences, VU University Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
- Department
of Chemistry, Faculty of Science and Engineering, Kindai University, Higashi-Osaka 577-8502, Osaka, Japan
| | - Judith Schäfers
- Department
of Physics and Astronomy and Institute for Lasers, Life and Biophotonics,
Faculty of Sciences, VU University Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
| | - Roberta Croce
- Department
of Physics and Astronomy and Institute for Lasers, Life and Biophotonics,
Faculty of Sciences, VU University Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
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19
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Swapnil P, Meena M, Singh SK, Dhuldhaj UP, Harish, Marwal A. Vital roles of carotenoids in plants and humans to deteriorate stress with its structure, biosynthesis, metabolic engineering and functional aspects. CURRENT PLANT BIOLOGY 2021; 26:100203. [DOI: 10.1016/j.cpb.2021.100203] [Citation(s) in RCA: 49] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
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20
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Šebelík V, Kuznetsova V, Lokstein H, Polívka T. Transient Absorption of Chlorophylls and Carotenoids after Two-Photon Excitation of LHCII. J Phys Chem Lett 2021; 12:3176-3181. [PMID: 33755477 DOI: 10.1021/acs.jpclett.1c00122] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Femtosecond transient absorption spectroscopy following two-photon excitation (2PE) is used to determine the contributions of carotenoids and chlorophylls to the 2PE signals in the main plant light-harvesting complex (LHCII). For 2PE, excitation at 1210 and 1300 nm was used, being within the known 2PE profile of LHCII. At both excitation wavelengths, the transient absorption spectra exhibit a shape characteristic of excited chlorophylls with only a minor contribution from carotenoids. We compare the 2PE data measured for LHCII with those obtained from 2PE of a lutein/chlorophyll a mixture in acetone. We estimate that although the 2PE cross section of a single carotenoid in acetone is ∼1.7 times larger than that of a Chl a, due to the 1:3.5 carotenoid/Chl ratio in LHCII, only one-third of the absorbed 2PE photons excite carotenoids in LHCII in the 1200-1300 nm range.
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Affiliation(s)
- Václav Šebelík
- Department of Physics, Faculty of Science, University of South Bohemia, Branišovská 1760, 370 05 České Budějovice, Czech Republic
| | - Valentyna Kuznetsova
- Department of Physics, Faculty of Science, University of South Bohemia, Branišovská 1760, 370 05 České Budějovice, Czech Republic
| | - Heiko Lokstein
- Department of Chemical Physics and Optics, Charles University, Ke Karlovu 3, 121 16 Prague 2, Czech Republic
| | - Tomáš Polívka
- Department of Physics, Faculty of Science, University of South Bohemia, Branišovská 1760, 370 05 České Budějovice, Czech Republic
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21
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Maity S, Daskalakis V, Elstner M, Kleinekathöfer U. Multiscale QM/MM molecular dynamics simulations of the trimeric major light-harvesting complex II. Phys Chem Chem Phys 2021; 23:7407-7417. [PMID: 33876100 DOI: 10.1039/d1cp01011e] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Photosynthetic processes are driven by sunlight. Too little of it and the photosynthetic machinery cannot produce the reductive power to drive the anabolic pathways. Too much sunlight and the machinery can get damaged. In higher plants, the major Light-Harvesting Complex (LHCII) efficiently absorbs the light energy, but can also dissipate it when in excess (quenching). In order to study the dynamics related to the quenching process but also the exciton dynamics in general, one needs to accurately determine the so-called spectral density which describes the coupling between the relevant pigment modes and the environmental degrees of freedom. To this end, Born-Oppenheimer molecular dynamics simulations in a quantum mechanics/molecular mechanics (QM/MM) fashion utilizing the density functional based tight binding (DFTB) method have been performed for the ground state dynamics. Subsequently, the time-dependent extension of the long-range-corrected DFTB scheme has been employed for the excited state calculations of the individual chlorophyll-a molecules in the LHCII complex. The analysis of this data resulted in spectral densities showing an astonishing agreement with the experimental counterpart in this rather large system. This consistency with an experimental observable also supports the accuracy, robustness, and reliability of the present multi-scale scheme. To the best of our knowledge, this is the first theoretical attempt on this large complex system is ever made to accurately simulate the spectral density. In addition, the resulting spectral densities and site energies were used to determine the exciton transfer rate within a special pigment pair consisting of a chlorophyll-a and a carotenoid molecule which is assumed to play a role in the balance between the light harvesting and quenching modes.
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Affiliation(s)
- Sayan Maity
- Department of Physics and Earth Sciences, Jacobs University Bremen, Campus Ring 1, 28759 Bremen, Germany.
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22
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Pieper J, Irrgang KD. Nature of low-energy exciton levels in light-harvesting complex II of green plants as revealed by satellite hole structure. PHOTOSYNTHESIS RESEARCH 2020; 146:279-285. [PMID: 32405995 DOI: 10.1007/s11120-020-00752-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Accepted: 04/17/2020] [Indexed: 06/11/2023]
Abstract
Persistent non-photochemical hole burning at 4.2 K is an efficient experimental tool to unravel position and nature of low-energy excitonic states in pigment-protein complexes. This is demonstrated here for the case of the trimeric chlorophyll (Chl) a/b light-harvesting complexes of Photosystem II (LHC II) of green plants, where previous work (Pieper et al. J Phys Chem B 103:2412, 1999a) reported a highly localized lowest energy state at 680 nm. At that time, this finding appeared to be consistent with the contemporary knowledge about the LHC II structure, which mainly suggested the presence of weakly coupled Chl heterodimers. Currently, however, it is widely accepted that the lowest state is associated with an excitonically coupled trimer of Chl molecules at physiological temperatures. This raises the question, why an excitonically coupled state has not been identified by spectral hole burning. A re-inspection of the hole burning data reveals a remarkable dependence of satellite hole structure on burn fluence, which is indicative of the excitonic coupling of the low-energy states of trimeric LHC II. At low fluence, the satellite hole structure of the lowest/fluorescing ~ 680 nm state is weak with only one shallow satellite hole at 649 nm in the Chl b spectral range. These findings suggest that the lowest energy state at ~ 680 nm is essentially localized on a Chl a molecule, which may belong to a Chl a/b heterodimer. At high fluence, however, the lowest energy hole shifts blue to ~ 677 nm and is accompanied by two satellite holes at ~ 673 and 663 nm, respectively, indicating that this state is excitonically coupled to other Chl a molecules. In conclusion, LHC II seems to possess two different, but very closely spaced lowest energy states at cryogenic temperatures of 4.2 K.
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Affiliation(s)
- Jörg Pieper
- Institute of Physics, University of Tartu, W. Ostwald str. 1, Tartu, 50411, Estonia.
| | - Klaus-Dieter Irrgang
- Department of Life Science & Technology, Laboratory of Biochemistry, University for Applied Sciences, Berlin, Germany
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23
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Kjær C, Gruber E, Nielsen SB, Andersen LH. Color tuning of chlorophyll a and b pigments revealed from gas-phase spectroscopy. Phys Chem Chem Phys 2020; 22:20331-20336. [PMID: 32895686 DOI: 10.1039/d0cp03210g] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Chlorophyll (Chl) pigments are responsible for vital mechanisms in photosynthetic proteins: light harvesting, energy transfer and charge separation. A complex interplay between the Chl molecule and its microenvironment determines its transition energy. Interactions such as excitonic coupling with one or more pigments (Chls or carotenoids), axial ligation to the magnesium center, or electrostatic interactions between Chl and nearby amino-acid residues all influence the photophysical properties. Here we use time-resolved photodissociation action spectroscopy to determine transition energies of Chla/b complexes in vacuo to directly compare the impact of a negatively charged axial ligand (formate) to that of exciton coupling between two Chls. Experiments carried out at the electrostatic ion storage ring ELISA allow dissociation to be sampled on hundreds of milliseconds time scale. Absorption-band maxima of Chla-formate complexes are found at 433 ± 4 nm/2.86 ± 0.03 eV (Soret band) and in the region 654-675 nm/1.84-1.90 eV (Q band) and those of Chla dimers tagged by a quaternary ammonium ion at 419 ± 5 nm/2.96 ± 0.04 eV (Soret band) and 647 nm/1.92 eV (Q band). The axial ligand strongly affects the Chla transition energies causing redshifts of 0.21 eV of the Soret band and 0.04-0.1 eV of the Q band compared to Chla tagged by a quaternary ammonium. Slightly smaller shifts were found in case of Chlb. The redshifts are approximately twice that induced by excitonic coupling between two Chlas, also tagged by a quaternary ammonium ion. Axial ligation brings the absorption by isolated Chls very close to that of photosynthetic proteins.
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Affiliation(s)
- Christina Kjær
- Department of Physics and Astronomy, Aarhus University, Denmark.
| | - Elisabeth Gruber
- Department of Physics and Astronomy, Aarhus University, Denmark.
| | | | - Lars H Andersen
- Department of Physics and Astronomy, Aarhus University, Denmark.
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Croce R, van Amerongen H. Light harvesting in oxygenic photosynthesis: Structural biology meets spectroscopy. Science 2020; 369:369/6506/eaay2058. [PMID: 32820091 DOI: 10.1126/science.aay2058] [Citation(s) in RCA: 133] [Impact Index Per Article: 33.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Oxygenic photosynthesis is the main process that drives life on earth. It starts with the harvesting of solar photons that, after transformation into electronic excitations, lead to charge separation in the reaction centers of photosystems I and II (PSI and PSII). These photosystems are large, modular pigment-protein complexes that work in series to fuel the formation of carbohydrates, concomitantly producing molecular oxygen. Recent advances in cryo-electron microscopy have enabled the determination of PSI and PSII structures in complex with light-harvesting components called "supercomplexes" from different organisms at near-atomic resolution. Here, we review the structural and spectroscopic aspects of PSI and PSII from plants and algae that directly relate to their light-harvesting properties, with special attention paid to the pathways and efficiency of excitation energy transfer and the regulatory aspects.
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Affiliation(s)
- Roberta Croce
- Department of Physics and Astronomy, Faculty of Science, Vrije Universiteit Amsterdam, Amsterdam, Netherlands.
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25
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Kim E, Kawakami K, Sato R, Ishii A, Minagawa J. Photoprotective Capabilities of Light-Harvesting Complex II Trimers in the Green Alga Chlamydomonas reinhardtii. J Phys Chem Lett 2020; 11:7755-7761. [PMID: 32822182 DOI: 10.1021/acs.jpclett.0c02098] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Major light-harvesting complex (LHCII) trimers in plants induce the thermal dissipation of absorbed excitation energy against photooxidative damage under excess light conditions. LHCII trimers in green algae have been thought to be incapable of energy dissipation without additional quencher proteins, although LHCIIs in plants and green algae are homologous. In this study, we investigated the energy-dissipative capabilities of four distinct types of LHCII trimers isolated from the model green alga Chlamydomonas reinhardtii using spectroscopic analysis. Our results revealed that the LHCII trimers possessing LHCII type II (LHCBM5) and LHCII type IV (LHCBM1) had efficient energy-dissipative capabilities, whereas LHCII type I (LHCBM3/4/6/8/9) and type III (LHCBM2/7) did not. On the basis of the amino acid sequences of LHCBM5 and LHCBM1 compared with the other LHCBMs, we propose that positively charged extra N-terminal amino acid residues mediate the interactions between LHCII trimers to form energy-dissipative states.
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Affiliation(s)
- Eunchul Kim
- Division of Environmental Photobiology, National Institute for Basic Biology, Okazaki 444-8585, Japan
- Division of Biological Science, Graduate School of Science, Nagoya University, Chikusa, Nagoya 464-8602, Japan
| | - Keisuke Kawakami
- Research Center for Artificial Photosynthesis, Osaka City University, 3-3-138, Osaka, Japan
| | - Ryoichi Sato
- Division of Environmental Photobiology, National Institute for Basic Biology, Okazaki 444-8585, Japan
| | - Asako Ishii
- Division of Environmental Photobiology, National Institute for Basic Biology, Okazaki 444-8585, Japan
| | - Jun Minagawa
- Division of Environmental Photobiology, National Institute for Basic Biology, Okazaki 444-8585, Japan
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26
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Bhattacharyya P, Fleming GR. The role of resonant nuclear modes in vibrationally assisted energy transport: The LHCII complex. J Chem Phys 2020; 153:044119. [DOI: 10.1063/5.0012420] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
Affiliation(s)
- Pallavi Bhattacharyya
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Lab, Berkeley, California 94720, USA
| | - Graham R. Fleming
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Lab, Berkeley, California 94720, USA
- Kavli Energy Nanosciences Institute at Berkeley, Berkeley, California 94720, USA
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27
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Kozlov MI, Poddubnyy VV. Electron-Vibrational Spectra and Dynamics of the Lutein Molecule. J Phys Chem B 2020; 124:5780-5787. [PMID: 32573243 DOI: 10.1021/acs.jpcb.0c02511] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The carotenoid molecules such as lutein play an important role in the absorption of light and the following transfer of energy during photosynthesis. However, the study of these processes by the experimental methods only is quite difficult because some of the transitions between the electronic states of carotenoids are optically forbidden and the effect of vibrational states change also must be taken into account. In the present work, electronic-vibrational states of the lutein molecule in the LHCII complex of higher plants and in the diethyl ether solution were described using the ab initio methods. For lutein of LHCII, the electronic energy transfer processes were modeled. The role of the "hot" S1 states of lutein was shown to be of great importance.
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Affiliation(s)
- Maxim I Kozlov
- Chemistry Department, Lomonosov Moscow State University, 119991 Moscow, Russia
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28
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Guo J, Du M, Lu C, Wang B. NaCl improves reproduction by enhancing starch accumulation in the ovules of the euhalophyte Suaeda salsa. BMC PLANT BIOLOGY 2020; 20:262. [PMID: 32513114 PMCID: PMC7282069 DOI: 10.1186/s12870-020-02468-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2020] [Accepted: 05/26/2020] [Indexed: 05/11/2023]
Abstract
BACKGROUND Halophytes show optimal reproduction under high-salinity conditions. However, the role of NaCl in reproduction and its possible mechanisms in the euhalophyte Suaeda salsa remain to be elucidated. RESULTS We performed transcript profiling of S. salsa flowers and measured starch accumulation in ovules, sugar contents in flowers, and photosynthetic parameters in the leaves of plants supplied with 0 and 200 mM NaCl. Starch accumulation in ovules, sugar contents in flowers and ovules, and net photosynthetic rate and photochemical efficiency in leaves were significantly higher in NaCl-treated plants vs. the control. We identified 14,348 differentially expressed genes in flowers of NaCl-treated vs. control plants. Many of these genes were predicted to be associated with photosynthesis, carbon utilization, and sugar and starch metabolism. These genes are crucial for maintaining photosystem structure, regulating electron transport, and improving photosynthetic efficiency in NaCl-treated plants. In addition, genes encoding fructokinase and sucrose phosphate synthase were upregulated in flowers of NaCl-treated plants. CONCLUSIONS The higher starch and sugar contents in the ovules and flowers of S. salsa in response to NaCl treatment are likely due to the upregulation of genes involved in photosynthesis and carbohydrate metabolism, which increase photosynthetic efficiency and accumulation of photosynthetic products under these conditions.
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Affiliation(s)
- Jianrong Guo
- Shandong Provincial Key Laboratory of Plant Stress, College of Life Sciences, Shandong Normal University, Ji’nan, Shandong 250014 People’s Republic of China
| | - Ming Du
- Shandong Provincial Key Laboratory of Plant Stress, College of Life Sciences, Shandong Normal University, Ji’nan, Shandong 250014 People’s Republic of China
| | - Chaoxia Lu
- Shandong Provincial Key Laboratory of Plant Stress, College of Life Sciences, Shandong Normal University, Ji’nan, Shandong 250014 People’s Republic of China
| | - Baoshan Wang
- Shandong Provincial Key Laboratory of Plant Stress, College of Life Sciences, Shandong Normal University, Ji’nan, Shandong 250014 People’s Republic of China
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29
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Balevičius V, Duffy CDP. Excitation quenching in chlorophyll-carotenoid antenna systems: 'coherent' or 'incoherent'. PHOTOSYNTHESIS RESEARCH 2020; 144:301-315. [PMID: 32266612 PMCID: PMC7239839 DOI: 10.1007/s11120-020-00737-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2019] [Accepted: 03/18/2020] [Indexed: 05/20/2023]
Abstract
Plants possess an essential ability to rapidly down-regulate light-harvesting in response to high light. This photoprotective process involves the formation of energy-quenching interactions between the chlorophyll and carotenoid pigments within the antenna of Photosystem II (PSII). The nature of these interactions is currently debated, with, among others, 'incoherent' or 'coherent' quenching models (or a combination of the two) suggested by a range of time-resolved spectroscopic measurements. In 'incoherent quenching', energy is transferred from a chlorophyll to a carotenoid and is dissipated due to the intrinsically short excitation lifetime of the latter. 'Coherent quenching' would arise from the quantum mechanical mixing of chlorophyll and carotenoid excited state properties, leading to a reduction in chlorophyll excitation lifetime. The key parameters are the energy gap, [Formula: see text] and the resonance coupling, J, between the two excited states. Coherent quenching will be the dominant process when [Formula: see text] i.e., when the two molecules are resonant, while the quenching will be largely incoherent when [Formula: see text] One would expect quenching to be energetically unfavorable for [Formula: see text] The actual dynamics of quenching lie somewhere between these limiting regimes and have non-trivial dependencies of both J and [Formula: see text] Using the Hierarchical Equation of Motion (HEOM) formalism we present a detailed theoretical examination of these excitation dynamics and their dependence on slow variations in J and [Formula: see text] We first consider an isolated chlorophyll-carotenoid dimer before embedding it within a PSII antenna sub-unit (LHCII). We show that neither energy transfer, nor the mixing of excited state lifetimes represent unique or necessary pathways for quenching and in fact discussing them as distinct quenching mechanisms is misleading. However, we do show that quenching cannot be switched 'on' and 'off' by fine tuning of [Formula: see text] around the resonance point, [Formula: see text] Due to the large reorganization energy of the carotenoid excited state, we find that the presence (or absence) of coherent interactions have almost no impact of the dynamics of quenching. Counter-intuitively significant quenching is present even when the carotenoid excited state lies above that of the chlorophyll. We also show that, above a rather small threshold value of [Formula: see text]quenching becomes less and less sensitive to J (since in the window [Formula: see text] the overall lifetime is independent of it). The requirement for quenching appear to be only that [Formula: see text] Although the coherent/incoherent character of the quenching can vary, the overall kinetics are likely robust with respect to fluctuations in J and [Formula: see text] This may be the basis for previous observations of NPQ with both coherent and incoherent features.
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Affiliation(s)
- Vytautas Balevičius
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London, E1 4NS, UK
| | - Christopher D P Duffy
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London, E1 4NS, UK.
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30
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Schwermann C, Doltsinis NL. Exciton transfer free energy from Car-Parrinello molecular dynamics. Phys Chem Chem Phys 2020; 22:10526-10535. [PMID: 31974540 DOI: 10.1039/c9cp06419b] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A computational approach is presented which allows the calculation of free energies profiles for exciton transfer processes within the framework of ab initio molecular dynamics (AIMD) simulations, sampling both the electronic and the nuclear degrees of freedom. To achieve this, restraining potentials are imposed on the centres of maximally localized Wannier orbitals. The resulting quantum-mechanical orbital forces are derived analytically and implemented in an AIMD program. In analogy to classical umbrella sampling techniques, these restraints are used to control an exciton transfer by incrementally moving the Wannier centres corresponding to the electron-hole pair along a suitable reaction coordinate. The new method is applied to study exciton transfer between two stacked penta(3-methylthiophene) molecules as a function of intermolecular distance. From the resulting free energy profiles, exciton transfer rates and diffusion constants are estimated, which prove to be in line with experimental results.
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Affiliation(s)
- Christian Schwermann
- Institute of Solid State Theory and Center for Multiscale Theory and Computation, Westfälische Wilhelms-Universität Münster, 48149 Münster, Germany.
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31
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Ostroumov EE, Götze JP, Reus M, Lambrev PH, Holzwarth AR. Characterization of fluorescent chlorophyll charge-transfer states as intermediates in the excited state quenching of light-harvesting complex II. PHOTOSYNTHESIS RESEARCH 2020; 144:171-193. [PMID: 32307623 DOI: 10.1007/s11120-020-00745-8] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2020] [Accepted: 03/31/2020] [Indexed: 05/20/2023]
Abstract
Light-harvesting complex II (LHCII) is the major antenna complex in higher plants and green algae. It has been suggested that a major part of the excited state energy dissipation in the so-called "non-photochemical quenching" (NPQ) is located in this antenna complex. We have performed an ultrafast kinetics study of the low-energy fluorescent states related to quenching in LHCII in both aggregated and the crystalline form. In both sample types the chlorophyll (Chl) excited states of LHCII are strongly quenched in a similar fashion. Quenching is accompanied by the appearance of new far-red (FR) fluorescence bands from energetically low-lying Chl excited states. The kinetics of quenching, its temperature dependence down to 4 K, and the properties of the FR-emitting states are very similar both in LHCII aggregates and in the crystal. No such FR-emitting states are found in unquenched trimeric LHCII. We conclude that these states represent weakly emitting Chl-Chl charge-transfer (CT) states, whose formation is part of the quenching process. Quantum chemical calculations of the lowest energy exciton and CT states, explicitly including the coupling to the specific protein environment, provide detailed insight into the chemical nature of the CT states and the mechanism of CT quenching. The experimental data combined with the results of the calculations strongly suggest that the quenching mechanism consists of a sequence of two proton-coupled electron transfer steps involving the three quenching center Chls 610/611/612. The FR-emitting CT states are reaction intermediates in this sequence. The polarity-controlled internal reprotonation of the E175/K179 aa pair is suggested as the switch controlling quenching. A unified model is proposed that is able to explain all known conditions of quenching or non-quenching of LHCII, depending on the environment without invoking any major conformational changes of the protein.
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Affiliation(s)
- Evgeny E Ostroumov
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, 45470, Mülheim a. d. Ruhr, Germany
- Quantum Matter Institute, University of British Columbia, 2355 East Mall, Vancouver, V6T 1Z1, Canada
| | - Jan P Götze
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, 45470, Mülheim a. d. Ruhr, Germany
- Institut für Chemie und Biochemie, Freie Universität Berlin, Arnimallee 22, 14195, Berlin, Germany
| | - Michael Reus
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, 45470, Mülheim a. d. Ruhr, Germany
| | - Petar H Lambrev
- Biological Research Centre, Temesvári krt. 62, Szeged, 6726, Hungary
| | - Alfred R Holzwarth
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, 45470, Mülheim a. d. Ruhr, Germany.
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van Amerongen H, Chmeliov J. Instantaneous switching between different modes of non-photochemical quenching in plants. Consequences for increasing biomass production. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2020; 1861:148119. [DOI: 10.1016/j.bbabio.2019.148119] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2019] [Revised: 10/29/2019] [Accepted: 11/08/2019] [Indexed: 11/25/2022]
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Excitation dynamics and relaxation in the major antenna of a marine green alga Bryopsis corticulans. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2020; 1861:148186. [PMID: 32171793 DOI: 10.1016/j.bbabio.2020.148186] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2019] [Revised: 02/24/2020] [Accepted: 03/09/2020] [Indexed: 11/20/2022]
Abstract
The light-harvesting complexes II (LHCIIs) of spinach and Bryopsis corticulans as a green alga are similar in structure, but differ in carotenoid (Car) and chlorophyll (Chl) compositions. Carbonyl Cars siphonein (Spn) and siphonaxanthin (Spx) bind to B. corticulans LHCII likely in the sites as a pair of lutein (Lut) molecules bind to spinach LHCII in the central domain. To understand the light-harvesting and photoprotective properties of the algal LHCII, we compared its excitation dynamics and relaxation to those of spinach LHCII been well documented. It was found that B. corticulans LHCII exhibited a substantially longer chlorophyll (Chl) fluorescence lifetime (4.9 ns vs 4.1 ns) and a 60% increase of the fluorescence quantum yield. Photoexcitation populated 3Car* equally between Spn and Spx in B. corticulans LHCII, whereas predominantly at Lut620 in spinach LHCII. These results prove the functional differences of the LHCIIs with different Car pairs and Chl a/b ratios: B. corticulans LHCII shows the enhanced blue-green light absorption, the alleviated quenching of 1Chl*, and the dual sites of quenching 3Chl*, which may facilitate its light-harvesting and photoprotection functions. Moreover, for both types of LHCIIs, the triplet excitation profiles revealed the involvement of extra 3Car* formation mechanisms besides the conventional Chl-to-Car triplet transfer, which are discussed in relation to the ultrafast processes of 1Chl* quenching. Our experimental findings will be helpful in deepening the understanding of the light harvesting and photoprotection functions of B. corticulans living in the intertidal zone with dramatically changing light condition.
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Feng BH, Li GY, Islam M, Fu WM, Zhou YQ, Chen TT, Tao LX, Fu GF. Strengthened antioxidant capacity improves photosynthesis by regulating stomatal aperture and ribulose-1,5-bisphosphate carboxylase/oxygenase activity. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2020; 290:110245. [PMID: 31779890 DOI: 10.1016/j.plantsci.2019.110245] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2019] [Revised: 08/09/2019] [Accepted: 08/28/2019] [Indexed: 05/10/2023]
Abstract
ABA is important for plant growth and development; however, it also inhibits photosynthesis by regulating the stomatal aperture and ribulose-1,5-bisphosphate carboxylase/oxygenase activity. Noteworthy, this negative effect can be alleviated by antioxidants including ascorbic acid (AsA) and catalase (CAT), but the underlying mechanism remains unclear. Two rice cultivars, Zhefu802 (recurrent parent) and its near-isogenic line, fgl were selected and planted in a greenhouse with 30/24 °C (day/night) under natural sunlight conditions. Compared to fgl, Zhefu802 had significantly lower net photosynthetic rate (PN) and stomatal conductance (Cond) as well as significantly higher ABA and H2O2 contents. However, AsA and CAT increased PN, Cond, and stomatal aperture, which decreased H2O2 and malondialdehyde (MDA) levels. In this process, AsA and CAT significantly increased the ribulose-1,5-bisphosphate carboxylase activity, while they strongly decreased the ribulose-1,5-bisphosphate oxygenase activity, and finally caused an obvious decrease in the ratio of photorespiration (Pr) to PN. Additionally, AsA and CAT significantly increased the expression levels of RbcS and RbcL genes of leaves, while H2O2 significantly decreased them, especially the RbcS gene. In summary, the removal of H2O2 by AsA and CAT can improve the leaf photosynthesis by alleviating the inhibition on the stomatal conductance and ribulose-1,5-bisphosphate carboxylase capacity caused by ABA.
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Affiliation(s)
- B H Feng
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 310006, China
| | - G Y Li
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 310006, China
| | - Md Islam
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 310006, China; Department of Agricultural Extension, Ministry of Agriculture, Dhaka 1215, Bangladesh
| | - W M Fu
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 310006, China
| | - Y Q Zhou
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 310006, China
| | - T T Chen
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 310006, China
| | - L X Tao
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 310006, China; Department of Agricultural Extension, Ministry of Agriculture, Dhaka 1215, Bangladesh.
| | - G F Fu
- National Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 310006, China; Department of Agricultural Extension, Ministry of Agriculture, Dhaka 1215, Bangladesh.
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35
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Gacek DA, Holleboom CP, Liao PN, Negretti M, Croce R, Walla PJ. Carotenoid dark state to chlorophyll energy transfer in isolated light-harvesting complexes CP24 and CP29. PHOTOSYNTHESIS RESEARCH 2020; 143:19-30. [PMID: 31659623 DOI: 10.1007/s11120-019-00676-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2019] [Accepted: 09/11/2019] [Indexed: 06/10/2023]
Abstract
We present a comparison of the energy transfer between carotenoid dark states and chlorophylls for the minor complexes CP24 and CP29. To elucidate the potential involvement of certain carotenoid-chlorophyll coupling sites in fluorescence quenching of distinct complexes, varying carotenoid compositions and mutants lacking chlorophylls at specific binding sites were examined. Energy transfers between carotenoid dark states and chlorophylls were compared using the coupling parameter, [Formula: see text], which is calculated from the chlorophyll fluorescence observed after preferential carotenoid two-photon excitation. In CP24, artificial reconstitution with zeaxanthin leads to a significant reduction in the chlorophyll fluorescence quantum yield, [Formula: see text], and a considerable increase in [Formula: see text]. Similar effects of zeaxanthin were also observed in certain samples of CP29. In CP29, also the replacement of violaxanthin by the sole presence of lutein results in a significant quenching and increased [Formula: see text]. In contrast, the replacement of violaxanthin by lutein in CP24 is not significantly increasing [Formula: see text]. In general, these findings provide evidence that modification of the electronic coupling between carotenoid dark states and chlorophylls by changing carotenoids at distinct sites can significantly influence the quenching of these minor proteins, particularly when zeaxanthin or lutein is used. The absence of Chl612 in CP24 and of Chl612 or Chl603 in CP29 has a considerably smaller effect on [Formula: see text] and [Formula: see text] than the influence of some carotenoids reported above. However, in CP29 our results indicate slightly dequenching and decreased [Formula: see text] when these chlorophylls are absent. This might indicate that both, Chl612 and Chl603 are involved in carotenoid-dependent quenching in isolated CP29.
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Affiliation(s)
- Daniel A Gacek
- Department for Biophysical Chemistry, Institute for Physical and Theoretical Chemistry, Technische Universität Braunschweig, Gaußstr. 17, 38106, Brunswick, Germany
| | - Christoph-Peter Holleboom
- Department for Biophysical Chemistry, Institute for Physical and Theoretical Chemistry, Technische Universität Braunschweig, Gaußstr. 17, 38106, Brunswick, Germany
| | - Pen-Nan Liao
- Department for Biophysical Chemistry, Institute for Physical and Theoretical Chemistry, Technische Universität Braunschweig, Gaußstr. 17, 38106, Brunswick, Germany
| | - Marco Negretti
- Department of Physics and Astronomy and LaserLab Amsterdam, Faculty of Science, Vrije Universiteit Amsterdam, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands
| | - Roberta Croce
- Department of Physics and Astronomy and LaserLab Amsterdam, Faculty of Science, Vrije Universiteit Amsterdam, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands
| | - Peter Jomo Walla
- Department for Biophysical Chemistry, Institute for Physical and Theoretical Chemistry, Technische Universität Braunschweig, Gaußstr. 17, 38106, Brunswick, Germany.
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Chu N, Zhou JR, Fu HY, Huang MT, Zhang HL, Gao SJ. Global Gene Responses of Resistant and Susceptible Sugarcane Cultivars to Acidovorax avenae subsp. avenae Identified Using Comparative Transcriptome Analysis. Microorganisms 2019; 8:microorganisms8010010. [PMID: 31861562 PMCID: PMC7022508 DOI: 10.3390/microorganisms8010010] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2019] [Revised: 12/13/2019] [Accepted: 12/14/2019] [Indexed: 12/11/2022] Open
Abstract
Red stripe disease in sugarcane caused by Acidovorax avenae subsp. avenae (Aaa) is related to serious global losses in yield. However, the underlying molecular mechanisms associated with responses of sugarcane plants to infection by this pathogen remain largely unknown. Here, we used Illumina RNA-sequencing (RNA-seq) to perform large-scale transcriptome sequencing of two sugarcane cultivars to contrast gene expression patterns of plants between Aaa and mock inoculations, and identify key genes and pathways involved in sugarcane defense responses to Aaa infection. At 0–72 hours post-inoculation (hpi) of the red stripe disease-resistant cultivar ROC22, a total of 18,689 genes were differentially expressed between Aaa-inoculated and mock-inoculated samples. Of these, 8498 and 10,196 genes were up- and downregulated, respectively. In MT11-610, which is susceptible to red stripe disease, 15,782 genes were differentially expressed between Aaa-inoculated and mock-inoculated samples and 8807 and 6984 genes were up- and downregulated, respectively. The genes that were differentially expressed following Aaa inoculation were mainly involved in photosynthesis and carbon metabolism, phenylpropanoid biosynthesis, plant hormone signal transduction, and plant–pathogen interaction pathways. Further, qRT-PCR and RNA-seq used for additional validation of 12 differentially expressed genes (DEGs) showed that eight genes in particular were highly expressed in ROC22. These eight genes participated in the biosynthesis of lignin and coumarin, as well as signal transduction by salicylic acid, jasmonic acid, ethylene, and mitogen-activated protein kinase (MAPK), suggesting that they play essential roles in sugarcane resistance to Aaa. Collectively, our results characterized the sugarcane transcriptome during early infection with Aaa, thereby providing insights into the molecular mechanisms responsible for bacterial tolerance.
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Chmeliov J, Gelzinis A, Franckevičius M, Tutkus M, Saccon F, Ruban AV, Valkunas L. Aggregation-Related Nonphotochemical Quenching in the Photosynthetic Membrane. J Phys Chem Lett 2019; 10:7340-7346. [PMID: 31710503 DOI: 10.1021/acs.jpclett.9b03100] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
The photosynthetic apparatus of plants is a robust self-adjustable molecular system, able to function efficiently under varying environmental conditions. Under strong sunlight, it switches into photoprotective mode to avoid overexcitation by safely dissipating the excess absorbed light energy via nonphotochemical quenching (NPQ). Unfortunately, heterogeneous organization and simultaneous occurrence of multiple processes within the thylakoid membrane impede the study of natural NPQ under in vivo conditions; thus, usually artificially prepared antennae have been studied instead. However, it has never been shown directly that the origin of fluorescence quenching observed in these artificial systems underlies natural NPQ. Here we report the time-resolved fluorescence measurements of the dark-adapted and preilluminated-to induce NPQ-intact chloroplasts, performed over a broad temperature range. We show that their spectral response matches that observed in the LHCII aggregates, thus demonstrating explicitly for the first time that the latter in vitro system preserves essential properties of natural photoprotection.
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Affiliation(s)
- Jevgenij Chmeliov
- Institute of Chemical Physics, Faculty of Physics , Vilnius University , Saulėtekio Avenue 9 , LT-10222 Vilnius , Lithuania
- Department of Molecular Compound Physics , Center for Physical Sciences and Technology , Saulėtekio Avenue 3 , LT-10257 Vilnius , Lithuania
| | - Andrius Gelzinis
- Institute of Chemical Physics, Faculty of Physics , Vilnius University , Saulėtekio Avenue 9 , LT-10222 Vilnius , Lithuania
- Department of Molecular Compound Physics , Center for Physical Sciences and Technology , Saulėtekio Avenue 3 , LT-10257 Vilnius , Lithuania
| | - Marius Franckevičius
- Department of Molecular Compound Physics , Center for Physical Sciences and Technology , Saulėtekio Avenue 3 , LT-10257 Vilnius , Lithuania
| | - Marijonas Tutkus
- Department of Molecular Compound Physics , Center for Physical Sciences and Technology , Saulėtekio Avenue 3 , LT-10257 Vilnius , Lithuania
| | - Francesco Saccon
- School of Biological and Chemical Sciences , Queen Mary, University of London , Mile End Road , London E1 4NS , United Kingdom
| | - Alexander V Ruban
- School of Biological and Chemical Sciences , Queen Mary, University of London , Mile End Road , London E1 4NS , United Kingdom
| | - Leonas Valkunas
- Institute of Chemical Physics, Faculty of Physics , Vilnius University , Saulėtekio Avenue 9 , LT-10222 Vilnius , Lithuania
- Department of Molecular Compound Physics , Center for Physical Sciences and Technology , Saulėtekio Avenue 3 , LT-10257 Vilnius , Lithuania
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Saccon F, Durchan M, Kaňa R, Prášil O, Ruban AV, Polívka T. Spectroscopic Properties of Violaxanthin and Lutein Triplet States in LHCII are Independent of Carotenoid Composition. J Phys Chem B 2019; 123:9312-9320. [DOI: 10.1021/acs.jpcb.9b06293] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Francesco Saccon
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, E1 4NS London, U.K
| | - Milan Durchan
- Institute of Physics, Faculty of Science, University of South Bohemia, Branišovská 1760, 370 05 České Budějovice, Czech Republic
| | - Radek Kaňa
- Institute of Microbiology, Academy of Sciences of the Czech Republic, Opatovický mlýn, 379 81 Třeboň, Czech Republic
| | - Ondřej Prášil
- Institute of Microbiology, Academy of Sciences of the Czech Republic, Opatovický mlýn, 379 81 Třeboň, Czech Republic
| | - Alexander V. Ruban
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, E1 4NS London, U.K
| | - Tomáš Polívka
- Institute of Physics, Faculty of Science, University of South Bohemia, Branišovská 1760, 370 05 České Budějovice, Czech Republic
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Taffet EJ, Lee BG, Toa ZSD, Pace N, Rumbles G, Southall J, Cogdell RJ, Scholes GD. Carotenoid Nuclear Reorganization and Interplay of Bright and Dark Excited States. J Phys Chem B 2019; 123:8628-8643. [PMID: 31553605 DOI: 10.1021/acs.jpcb.9b04027] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We report quantum chemical calculations using multireference perturbation theory (MRPT) with the density matrix renormalization group (DMRG) plus photothermal deflection spectroscopy measurements to investigate the manifold of carotenoid excited states and establish their energies relative to the bright state (S2) as a function of nuclear reorganization. We conclude that the primary photophysics and function of carotenoids are determined by interplay of only the bright (S2) and lowest-energy dark (S1) states. The lowest-lying dark state, far from being energetically distinguishable from the lowest-lying bright state along the entire excited-state nuclear reorganization pathway, is instead computed to be either the second or first excited state depending on what equilibrium geometry is considered. This result suggests that, rather than there being a dark intermediate excited state bridging a non-negligible energy gap from the lowest-lying dark state to the lowest-lying bright state, there is in fact no appreciable energy gap to bridge following photoexcitation. Instead, excited-state nuclear reorganization constitutes the bridge from S2 to S1, in the sense that these two states attain energetic degeneracy along this pathway.
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Affiliation(s)
- Elliot J Taffet
- Department of Chemistry , Princeton University , Princeton , New Jersey 08544 , United States
| | - Benjamin G Lee
- Chemical and Materials Science Center , National Renewable Energy Laboratory , Golden , Colorado 80401 , United States
| | - Zi S D Toa
- Department of Chemistry , Princeton University , Princeton , New Jersey 08544 , United States
| | - Natalie Pace
- Chemical and Materials Science Center , National Renewable Energy Laboratory , Golden , Colorado 80401 , United States
| | - Garry Rumbles
- Chemical and Materials Science Center , National Renewable Energy Laboratory , Golden , Colorado 80401 , United States
| | - June Southall
- Institute of Molecular, Cell and Systems Biology, College of Medical Veterinary and Life Sciences , University of Glasgow , University Avenue, Glasgow G12 8QQ , U.K
| | - Richard J Cogdell
- Institute of Molecular, Cell and Systems Biology, College of Medical Veterinary and Life Sciences , University of Glasgow , University Avenue, Glasgow G12 8QQ , U.K
| | - Gregory D Scholes
- Department of Chemistry , Princeton University , Princeton , New Jersey 08544 , United States
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Gacek DA, Holleboom C, Tietz S, Kirchhoff H, Walla PJ. PsbS‐dependent and ‐independent mechanisms regulate carotenoid‐chlorophyll energy coupling in grana thylakoids. FEBS Lett 2019; 593:3190-3197. [DOI: 10.1002/1873-3468.13586] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Revised: 07/18/2019] [Accepted: 08/05/2019] [Indexed: 01/26/2023]
Affiliation(s)
- Daniel A. Gacek
- Department of Biophysical Chemistry Institute for Physical and Theoretical Chemistry Technische Universität Braunschweig Germany
| | - Christoph‐Peter Holleboom
- Department of Biophysical Chemistry Institute for Physical and Theoretical Chemistry Technische Universität Braunschweig Germany
| | - Stefanie Tietz
- Institute of Biological Chemistry Washington State University Pullman WA USA
- DOE Plant Research Laboratory Michigan State University East Lansing MI USA
| | - Helmut Kirchhoff
- Institute of Biological Chemistry Washington State University Pullman WA USA
| | - Peter Jomo Walla
- Department of Biophysical Chemistry Institute for Physical and Theoretical Chemistry Technische Universität Braunschweig Germany
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41
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Kyeyune F, Botha JL, van Heerden B, Malý P, van Grondelle R, Diale M, Krüger TPJ. Strong plasmonic fluorescence enhancement of individual plant light-harvesting complexes. NANOSCALE 2019; 11:15139-15146. [PMID: 31372623 DOI: 10.1039/c9nr04558a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Plasmonic coupling of metallic nanoparticles and adjacent pigments can dramatically increase the brightness of the pigments due to the enhanced local electric field. Here, we demonstrate that the fluorescence brightness of a single plant light-harvesting complex (LHCII) can be significantly enhanced when coupled to a gold nanorod (AuNR). The AuNRs utilized in this study were prepared via chemical reactions, and the hybrid system was constructed using a simple and economical spin-assisted layer-by-layer technique. Enhancement of fluorescence brightness of up to 240-fold was observed, accompanied by a 109-fold decrease in the average (amplitude-weighted) fluorescence lifetime from approximately 3.5 ns down to 32 ps, corresponding to an excitation enhancement of 63-fold and emission enhancement of up to 3.8-fold. This large enhancement is due to the strong spectral overlap of the longitudinal localized surface plasmon resonance of the utilized AuNRs and the absorption or emission bands of LHCII. This study provides an inexpensive strategy to explore the fluorescence dynamics of weakly emitting photosynthetic light-harvesting complexes at the single molecule level.
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Affiliation(s)
- Farooq Kyeyune
- Department of Physics, University of Pretoria, Hatfield, 0028 Pretoria, South Africa.
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Li M, Sui N, Lin L, Yang Z, Zhang Y. Transcriptomic profiling revealed genes involved in response to cold stress in maize. FUNCTIONAL PLANT BIOLOGY : FPB 2019; 46:830-844. [PMID: 31217070 DOI: 10.1071/fp19065] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2019] [Accepted: 05/06/2019] [Indexed: 05/18/2023]
Abstract
Maize is an important food crop. Chilling stress can decrease maize production by affecting seed germination and seedling growth, especially in early spring. We analysed chlorophyll fluorescence, membrane lipids, secondary metabolites and the transcriptome of two maize inbred lines (chilling-tolerant M54 and chilling-sensitive 753F) after 0, 4 and 24 h cold stress. M54 showed better ability to protect PSII and accumulate secondary metabolites. From RNA sequencing data, we determined that the majority of cold-affected genes were involved in photosynthesis, secondary metabolism, and signal transduction. Genes important for maintaining photosystem structure and for regulating electron transport were less affected by cold stress in M54 than in 753F. Expression of genes related to secondary metabolism and unsaturated fatty acid synthesis were upregulated more strongly in M54 than in 753F and M54 accumulated more unsaturated fatty acids and secondary metabolites. As a result, M54 achieved relatively high cold tolerance by protecting the photosystems and maintaining the stability of cell membranes.
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Affiliation(s)
- Meng Li
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, China; and Shandong Academy of Agricultural Sciences, Jinan, Shandong, China
| | - Na Sui
- Shandong Provincial Key Laboratory of Plant Stress, College of Life Sciences, Shandong Normal University, Jinan, Shandong, China
| | - Lin Lin
- Water Research Institute of Shandong Province, No. 125 Lishan Road, Jinan City, Shandong Province, China
| | - Zhen Yang
- Shandong Provincial Key Laboratory of Microbial Engineering, School of Biologic Engineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, Shandong, China; and Corresponding authors. ;
| | - Yuanhu Zhang
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, China; and Corresponding authors. ;
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43
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Peng X, Deng X, Tang X, Tan T, Zhang D, Liu B, Lin H. Involvement of Lhcb6 and Lhcb5 in Photosynthesis Regulation in Physcomitrella patens Response to Abiotic Stress. Int J Mol Sci 2019; 20:ijms20153665. [PMID: 31357454 PMCID: PMC6695650 DOI: 10.3390/ijms20153665] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2019] [Revised: 07/20/2019] [Accepted: 07/22/2019] [Indexed: 11/16/2022] Open
Abstract
There are a number of highly conserved photosystem II light-harvesting antenna proteins in moss whose functions are unclear. Here, we investigated the involvement of chlorophyll-binding proteins, Lhcb6 and Lhcb5, in light-harvesting and photosynthesis regulation in Physcomitrella patens. Lhcb6 or Lhcb5 knock-out resulted in a disordered thylakoid arrangement, a decrease in the number of grana membranes, and an increase in the number of starch granule. The absence of Lhcb6 or Lhcb5 did not noticeably alter the electron transport rates. However, the non-photochemical quenching activity in the lhcb5 mutant was dramatically reduced when compared to wild-type or lhcb6 plants under abiotic stress. Lhcb5 plants were more sensitive to photo-inhibition, while lhcb6 plants showed little difference compared to the wild-type plants under high-light stress. Moreover, both mutants showed a growth malformation phenotype with reduced chlorophyll content in the gametophyte. These results suggested that Lhcb6 or Lhcb5 played a unique role in plant development, thylakoid organization, and photoprotection of PSII in Physcomitrella, especially when exposed to high light or osmotic environments.
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Affiliation(s)
- Xingji Peng
- Ministry of Education Key Laboratory for Bio-Resource and Eco-Environment, College of Life Science, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China
| | - Xingguang Deng
- Ministry of Education Key Laboratory for Bio-Resource and Eco-Environment, College of Life Science, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China
| | - Xiaoya Tang
- Ministry of Education Key Laboratory for Bio-Resource and Eco-Environment, College of Life Science, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China
| | - Tinghong Tan
- Ministry of Education Key Laboratory for Bio-Resource and Eco-Environment, College of Life Science, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China
| | - Dawei Zhang
- Ministry of Education Key Laboratory for Bio-Resource and Eco-Environment, College of Life Science, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China
| | - Baohui Liu
- School of Life Sciences, Guangzhou University, Guangzhou 510006, China
| | - Honghui Lin
- Ministry of Education Key Laboratory for Bio-Resource and Eco-Environment, College of Life Science, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China.
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Insights into the mechanisms and dynamics of energy transfer in plant light-harvesting complexes from two-dimensional electronic spectroscopy. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2019; 1861:148050. [PMID: 31326408 DOI: 10.1016/j.bbabio.2019.07.005] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2019] [Revised: 07/01/2019] [Accepted: 07/15/2019] [Indexed: 12/25/2022]
Abstract
During the past two decades, two-dimensional electronic spectroscopy (2DES) and related techniques have emerged as a potent experimental toolset to study the ultrafast elementary steps of photosynthesis. Apart from the highly engaging albeit controversial analysis of the role of quantum coherences in the photosynthetic processes, 2DES has been applied to resolve the dynamics and pathways of energy and electron transport in various light-harvesting antenna systems and reaction centres, providing unsurpassed level of detail. In this paper we discuss the main technical approaches and their applicability for solving specific problems in photosynthesis. We then recount applications of 2DES to study the exciton dynamics in plant and photosynthetic light-harvesting complexes, especially light-harvesting complex II (LHCII) and the fucoxanthin-chlorophyll proteins of diatoms, with emphasis on the types of unique information about such systems that 2DES is capable to deliver. This article is part of a Special Issue entitled Light harvesting, edited by Dr. Roberta Croce.
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Microsecond and millisecond dynamics in the photosynthetic protein LHCSR1 observed by single-molecule correlation spectroscopy. Proc Natl Acad Sci U S A 2019; 116:11247-11252. [PMID: 31101718 DOI: 10.1073/pnas.1821207116] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Biological systems are subjected to continuous environmental fluctuations, and therefore, flexibility in the structure and function of their protein building blocks is essential for survival. Protein dynamics are often local conformational changes, which allows multiple dynamical processes to occur simultaneously and rapidly in individual proteins. Experiments often average over these dynamics and their multiplicity, preventing identification of the molecular origin and impact on biological function. Green plants survive under high light by quenching excess energy, and Light-Harvesting Complex Stress Related 1 (LHCSR1) is the protein responsible for quenching in moss. Here, we expand an analysis of the correlation function of the fluorescence lifetime by improving the estimation of the lifetime states and by developing a multicomponent model correlation function, and we apply this analysis at the single-molecule level. Through these advances, we resolve previously hidden rapid dynamics, including multiple parallel processes. By applying this technique to LHCSR1, we identify and quantitate parallel dynamics on hundreds of microseconds and tens of milliseconds timescales, likely at two quenching sites within the protein. These sites are individually controlled in response to fluctuations in sunlight, which provides robust regulation of the light-harvesting machinery. Considering our results in combination with previous structural, spectroscopic, and computational data, we propose specific pigments that serve as the quenching sites. These findings, therefore, provide a mechanistic basis for quenching, illustrating the ability of this method to uncover protein function.
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46
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Lee J, Song J, Lee D, Pang Y. Metal-enhanced fluorescence and excited state dynamics of carotenoids in thin polymer films. Sci Rep 2019; 9:3551. [PMID: 30837679 PMCID: PMC6401168 DOI: 10.1038/s41598-019-40446-4] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2018] [Accepted: 02/14/2019] [Indexed: 11/09/2022] Open
Abstract
Metal-enhanced fluorescence of carotenoids, all-trans-β-carotene and 8'-apo-β-carotene-8'-al dispersed in thin layers of polystyrene and polyethylene glycol were investigated by time-resolved fluorescence spectroscopy. The weak emission signals of carotenoids in polymer films were increased by 4-40 times in the presence of a silver island film and the emission lifetimes of both carotenoids were measured as significantly shortened. The energy transfer from the intermediate states of carotenoids to the silver islands and the subsequent surface plasmon coupled emission were proposed for the mechanisms of metal-enhanced fluorescence. The fluorescence enhancements of carotenoids in the polymer films were also investigated statistically over a wide area of the silver island films.
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Affiliation(s)
- Jaebeom Lee
- Department of Physics and Photon Science, Gwangju Institute of Science and Technology, 123 Cheomdangwagi-ro, Buk-gu, Gwangju, 61005, Republic of Korea
| | - Junghyun Song
- Department of Chemistry, Gwangju Institute of Science and Technology, 123 Cheomdangwagi-ro, Buk-gu, Gwangju, 61005, Republic of Korea
| | - Daedu Lee
- Department of Chemistry, Gwangju Institute of Science and Technology, 123 Cheomdangwagi-ro, Buk-gu, Gwangju, 61005, Republic of Korea
| | - Yoonsoo Pang
- Department of Chemistry, Gwangju Institute of Science and Technology, 123 Cheomdangwagi-ro, Buk-gu, Gwangju, 61005, Republic of Korea.
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47
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Ab initio model for the chlorophyll-lutein exciton coupling in the LHCII complex. Biophys Chem 2019; 246:16-24. [DOI: 10.1016/j.bpc.2019.01.001] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2018] [Revised: 12/27/2018] [Accepted: 01/02/2019] [Indexed: 11/20/2022]
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Chlorophyll-carotenoid excitation energy transfer and charge transfer in Nannochloropsis oceanica for the regulation of photosynthesis. Proc Natl Acad Sci U S A 2019; 116:3385-3390. [PMID: 30808735 DOI: 10.1073/pnas.1819011116] [Citation(s) in RCA: 58] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Nonphotochemical quenching (NPQ) is a proxy for photoprotective thermal dissipation processes that regulate photosynthetic light harvesting. The identification of NPQ mechanisms and their molecular or physiological triggering factors under in vivo conditions is a matter of controversy. Here, to investigate chlorophyll (Chl)-zeaxanthin (Zea) excitation energy transfer (EET) and charge transfer (CT) as possible NPQ mechanisms, we performed transient absorption (TA) spectroscopy on live cells of the microalga Nannochloropsis oceanica We obtained evidence for the operation of both EET and CT quenching by observing spectral features associated with the Zea S1 and Zea●+ excited-state absorption (ESA) signals, respectively, after Chl excitation. Knockout mutants for genes encoding either violaxanthin de-epoxidase or LHCX1 proteins exhibited strongly inhibited NPQ capabilities and lacked detectable Zea S1 and Zea●+ ESA signals in vivo, which strongly suggests that the accumulation of Zea and active LHCX1 is essential for both EET and CT quenching in N. oceanica.
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Park S, Fischer AL, Steen CJ, Iwai M, Morris JM, Walla PJ, Niyogi KK, Fleming GR. Chlorophyll-Carotenoid Excitation Energy Transfer in High-Light-Exposed Thylakoid Membranes Investigated by Snapshot Transient Absorption Spectroscopy. J Am Chem Soc 2018; 140:11965-11973. [DOI: 10.1021/jacs.8b04844] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Soomin Park
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Kavli Energy Nanoscience Institute, Berkeley, California 94720, United States
| | - Alexandra L. Fischer
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Kavli Energy Nanoscience Institute, Berkeley, California 94720, United States
| | - Collin J. Steen
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Kavli Energy Nanoscience Institute, Berkeley, California 94720, United States
| | - Masakazu Iwai
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Howard Hughes Medical Institute, Department of Plant and Microbial Biology, University of California, Berkeley, California 94720, United States
| | - Jonathan M. Morris
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Kavli Energy Nanoscience Institute, Berkeley, California 94720, United States
| | - Peter Jomo Walla
- Kavli Energy Nanoscience Institute, Berkeley, California 94720, United States
- Department for Biophysical Chemistry, Technische Universität Braunschweig, Institute for Physical and Theoretical Chemistry, Hans-Sommer-Strasse 10, 38106 Braunschweig, Germany
- Department of Neurobiology, Research Group Biomolecular Spectroscopy and Single Molecule Detection, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany
| | - Krishna K. Niyogi
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Howard Hughes Medical Institute, Department of Plant and Microbial Biology, University of California, Berkeley, California 94720, United States
| | - Graham R. Fleming
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Kavli Energy Nanoscience Institute, Berkeley, California 94720, United States
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50
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Pfündel EE, Latouche G, Meister A, Cerovic ZG. Linking chloroplast relocation to different responses of photosynthesis to blue and red radiation in low and high light-acclimated leaves of Arabidopsis thaliana (L.). PHOTOSYNTHESIS RESEARCH 2018; 137:105-128. [PMID: 29374806 DOI: 10.1007/s11120-018-0482-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2017] [Accepted: 01/09/2018] [Indexed: 05/16/2023]
Abstract
Low light (LL) and high light (HL)-acclimated plants of A. thaliana were exposed to blue (BB) or red (RR) light or to a mixture of blue and red light (BR) of incrementally increasing intensities. The light response of photosystem II was measured by pulse amplitude-modulated chlorophyll fluorescence and that of photosystem I by near infrared difference spectroscopy. The LL but not HL leaves exhibited blue light-specific responses which were assigned to relocation of chloroplasts from the dark to the light-avoidance arrangement. Blue light (BB and BR) decreased the minimum fluorescence ([Formula: see text]) more than RR light. This extra reduction of the [Formula: see text] was stronger than theoretically predicted for [Formula: see text] quenching by energy dissipation but actual measurement and theory agreed in RR treatments. The extra [Formula: see text] reduction was assigned to decreased light absorption of chloroplasts in the avoidance position. A maximum reduction of 30% was calculated. Increasing intensities of blue light affected the fluorescence parameters NPQ and qP to a lesser degree than red light. After correcting for the optical effects of chloroplast relocation, the NPQ responded similarly to blue and red light. The same correction method diminished the color-specific variations in qP but did not abolish it; thus strongly indicating the presence of another blue light effect which also moderates excitation pressure in PSII but cannot be ascribed to absorption variations. Only after RR exposure, a post-illumination overshoot of [Formula: see text] and fast oxidation of PSI electron acceptors occurred, thus, suggesting an electron flow from stromal reductants to the plastoquinone pool.
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Affiliation(s)
- Erhard E Pfündel
- Lehrstuhl für Botanik II der Universität Würzburg, Julius-von-Sachs Institut für Biowissenschaften, 97082, Würzburg, Germany.
- Heinz Walz GmbH, Eichenring 6, 91090, Effeltrich, Germany.
| | - Gwendal Latouche
- Université Paris-Saclay, Université Paris-Sud, Laboratoire Écologie Systématique et Évolution, UMR8079, Bât. 362, 91405, Orsay, France
- CNRS, 91405, Orsay, France
- AgroParisTech, 75231, Paris, France
| | - Armin Meister
- Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK), Corrensstraße 3, 06466, Gatersleben, Germany
| | - Zoran G Cerovic
- Université Paris-Saclay, Université Paris-Sud, Laboratoire Écologie Systématique et Évolution, UMR8079, Bât. 362, 91405, Orsay, France
- CNRS, 91405, Orsay, France
- AgroParisTech, 75231, Paris, France
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