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For: Gopich IV, Szabo A. Photon counting histograms for diffusing fluorophores. J Phys Chem B 2007;109:17683-8. [PMID: 16853263 DOI: 10.1021/jp052345f] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Number Cited by Other Article(s)
1
Gopich IV, Kim JY, Chung HS. Analysis of photon trajectories from diffusing single molecules. J Chem Phys 2023;159:024119. [PMID: 37431909 PMCID: PMC10474944 DOI: 10.1063/5.0153114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Accepted: 06/19/2023] [Indexed: 07/12/2023]  Open
2
Gopich IV, Chung HS. Theory and Analysis of Single-Molecule FRET Experiments. Methods Mol Biol 2022;2376:247-282. [PMID: 34845614 DOI: 10.1007/978-1-0716-1716-8_14] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
3
Lerner E, Barth A, Hendrix J, Ambrose B, Birkedal V, Blanchard SC, Börner R, Sung Chung H, Cordes T, Craggs TD, Deniz AA, Diao J, Fei J, Gonzalez RL, Gopich IV, Ha T, Hanke CA, Haran G, Hatzakis NS, Hohng S, Hong SC, Hugel T, Ingargiola A, Joo C, Kapanidis AN, Kim HD, Laurence T, Lee NK, Lee TH, Lemke EA, Margeat E, Michaelis J, Michalet X, Myong S, Nettels D, Peulen TO, Ploetz E, Razvag Y, Robb NC, Schuler B, Soleimaninejad H, Tang C, Vafabakhsh R, Lamb DC, Seidel CAM, Weiss S. FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices. eLife 2021;10:e60416. [PMID: 33779550 PMCID: PMC8007216 DOI: 10.7554/elife.60416] [Citation(s) in RCA: 135] [Impact Index Per Article: 45.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Accepted: 02/09/2021] [Indexed: 12/18/2022]  Open
4
Scales N, Swain PS. Resolving fluorescent species by their brightness and diffusion using correlated photon-counting histograms. PLoS One 2019;14:e0226063. [PMID: 31887113 PMCID: PMC6936799 DOI: 10.1371/journal.pone.0226063] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2019] [Accepted: 11/19/2019] [Indexed: 12/27/2022]  Open
5
Abdollah-Nia F, Gelfand MP, Van Orden A. Artifact-Free and Detection-Profile-Independent Higher-Order Fluorescence Correlation Spectroscopy for Microsecond-Resolved Kinetics. 1. Multidetector and Sub-Binning Approach. J Phys Chem B 2017;121:2373-2387. [DOI: 10.1021/acs.jpcb.7b00407] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
6
Abdollah-Nia F, Gelfand MP, Van Orden A. Artifact-Free and Detection-Profile-Independent Higher-Order Fluorescence Correlation Spectroscopy for Microsecond-Resolved Kinetics. 2. Mixtures and Reactions. J Phys Chem B 2017;121:2388-2399. [DOI: 10.1021/acs.jpcb.7b00408] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
7
Skakun VV, Digris AV, Apanasovich VV. Global analysis of autocorrelation functions and photon counting distributions in fluorescence fluctuation spectroscopy. Methods Mol Biol 2014;1076:719-741. [PMID: 24108652 DOI: 10.1007/978-1-62703-649-8_33] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
8
Rajagopalan K, Qiu R, Mooney SM, Rao S, Shiraishi T, Sacho E, Huang H, Shapiro E, Weninger KR, Kulkarni P. The Stress-response protein prostate-associated gene 4, interacts with c-Jun and potentiates its transactivation. Biochim Biophys Acta Mol Basis Dis 2013;1842:154-63. [PMID: 24263171 DOI: 10.1016/j.bbadis.2013.11.014] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2013] [Revised: 10/26/2013] [Accepted: 11/13/2013] [Indexed: 01/18/2023]
9
Campos LA, Sadqi M, Liu J, Wang X, English DS, Muñoz V. Gradual Disordering of the Native State on a Slow Two-State Folding Protein Monitored by Single-Molecule Fluorescence Spectroscopy and NMR. J Phys Chem B 2013;117:13120-31. [DOI: 10.1021/jp403051k] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
10
Skakun VV, Engel R, Borst JW, Apanasovich VV, Visser AJWG. Simultaneous diffusion and brightness measurements and brightness profile visualization from single fluorescence fluctuation traces of GFP in living cells. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2012;41:1055-64. [PMID: 23064964 DOI: 10.1007/s00249-012-0864-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2012] [Revised: 09/12/2012] [Accepted: 09/21/2012] [Indexed: 10/27/2022]
11
DeVore MS, Gull SF, Johnson CK. Classic maximum entropy recovery of the average joint distribution of apparent FRET efficiency and fluorescence photons for single-molecule burst measurements. J Phys Chem B 2012;116:4006-15. [PMID: 22338694 PMCID: PMC3320690 DOI: 10.1021/jp209861u] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
12
Ridgeway WK, Millar DP, Williamson JR. The spectroscopic basis of fluorescence triple correlation spectroscopy. J Phys Chem B 2012;116:1908-19. [PMID: 22229664 DOI: 10.1021/jp208605z] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
13
Theory of Single-Molecule FRET Efficiency Histograms. ACTA ACUST UNITED AC 2011. [DOI: 10.1002/9781118131374.ch10] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/04/2023]
14
Speelman AL, Muñoz-Losa A, Hinkle KL, VanBeek DB, Mennucci B, Krueger BP. Using molecular dynamics and quantum mechanics calculations to model fluorescence observables. J Phys Chem A 2011;115:3997-4008. [PMID: 21417498 DOI: 10.1021/jp1095344] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
15
Campos LA, Liu J, Wang X, Ramanathan R, English DS, Muñoz V. A photoprotection strategy for microsecond-resolution single-molecule fluorescence spectroscopy. Nat Methods 2011;8:143-6. [DOI: 10.1038/nmeth.1553] [Citation(s) in RCA: 98] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2010] [Accepted: 12/07/2010] [Indexed: 11/09/2022]
16
Vukojević V, Heidkamp M, Ming Y, Johansson B, Terenius L, Rigler R. Quantitative single-molecule imaging by confocal laser scanning microscopy. Proc Natl Acad Sci U S A 2008;105:18176-81. [PMID: 19011092 PMCID: PMC2587633 DOI: 10.1073/pnas.0809250105] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2008] [Indexed: 12/11/2022]  Open
17
Petrášek Z, Schwille P. Fluctuations as a source of information in fluorescence microscopy. J R Soc Interface 2008. [DOI: 10.1098/rsif.2008.0200.focus] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]  Open
18
Gopich IV. Concentration effects in "single-molecule" spectroscopy. J Phys Chem B 2007;112:6214-20. [PMID: 18154285 DOI: 10.1021/jp0764182] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
19
Gopich IV, Szabo A. Single-molecule FRET with diffusion and conformational dynamics. J Phys Chem B 2007;111:12925-32. [PMID: 17929964 DOI: 10.1021/jp075255e] [Citation(s) in RCA: 126] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
20
Meng F, Ma H. A Comparison between Photon Counting Histogram and Fluorescence Intensity Distribution Analysis. J Phys Chem B 2006;110:25716-20. [PMID: 17181211 DOI: 10.1021/jp063845r] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
21
Wu B, Chen Y, Müller JD. Dual-color time-integrated fluorescence cumulant analysis. Biophys J 2006;91:2687-98. [PMID: 16815900 PMCID: PMC1562389 DOI: 10.1529/biophysj.106.086181] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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