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For: Hunter KC, Rutledge LR, Wetmore SD. The Hydrogen Bonding Properties of Cytosine:  A Computational Study of Cytosine Complexed with Hydrogen Fluoride, Water, and Ammonia. J Phys Chem A 2005;109:9554-62. [PMID: 16866407 DOI: 10.1021/jp0527709] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Number Cited by Other Article(s)
1
Sarac K, Orek C, Koparir P. Experimental and Theoretical Investigations Regarding the Thione–Thiol Tautomerism in 4-Benzyl-5-(thiophene-2-yl)-2,4-dihydro-3H-1,2,4-triazole-3-thione. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2021. [DOI: 10.1134/s1070428021010140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
2
Hamdi I, Bkhairia I, Roodt A, Roisnel T, Nasri M, Naïli H. Synthesis, intermolecular interactions and biological activities of two new organic-inorganic hybrids C6H10N2,2Br and C6H10N2,2Cl·H2O. RSC Adv 2020;10:5864-5873. [PMID: 35497437 PMCID: PMC9049630 DOI: 10.1039/c9ra09294c] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2019] [Accepted: 01/10/2020] [Indexed: 11/23/2022]  Open
3
Cukurovali A, Karakurt T. Synthesis, spectroscopic, X-ray diffraction and tautomeric properties of 5-(diethylamino)-2-((2-(5-(3-methyl-3-phenylcyclobutyl)-6H-1,3,4-thiadiazin-2yl)hydrazono)methyl)phenol: A combined experimental and theoretical study. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.04.052] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
4
Wei SC, Ho JW, Yen HC, Shi HQ, Cheng LH, Weng CN, Chou WK, Chiu CC, Cheng PY. Ultrafast Excited-State Dynamics of Hydrogen-Bonded Cytosine Microsolvated Clusters with Protic and Aprotic Polar Solvents. J Phys Chem A 2018;122:9412-9425. [PMID: 30452255 DOI: 10.1021/acs.jpca.8b09526] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
5
Ding Y, Wang X, Xie L, Yao X, Xu W. Two-dimensional self-assembled nanostructures of nucleobases and their related derivatives on Au(111). Chem Commun (Camb) 2018;54:9259-9269. [PMID: 30027963 DOI: 10.1039/c8cc03585g] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
6
Aouad MR, Messali M, Rezki N, Al-Zaqri N, Warad I. Single proton intramigration in novel 4-phenyl-3-((4-phenyl-1H-1,2,3-triazol-1-yl)methyl)-1H-1,2,4-triazole-5(4H)-thione: XRD-crystal interactions, physicochemical, thermal, Hirshfeld surface, DFT realization of thiol/thione tautomerism. J Mol Liq 2018. [DOI: 10.1016/j.molliq.2018.05.085] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
7
Jin L, Lv M, Zhao M, Wang R, Zhao C, Lu J, Wang L, Wang W, Wei Y. Formic acid catalyzed isomerization of protonated cytosine: a lower barrier reaction for tautomer production of potential biological importance. Phys Chem Chem Phys 2018;19:13515-13523. [PMID: 28497833 DOI: 10.1039/c7cp01008g] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
8
Saikia N, Johnson F, Waters K, Pandey R. Dynamics of self-assembled cytosine nucleobases on graphene. NANOTECHNOLOGY 2018;29:195601. [PMID: 29461252 DOI: 10.1088/1361-6528/aab0ea] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
9
Mroczek T, Plech T, Wujec M. Novel Concept of Discrimination of 1,2,4-Triazole-3-thione and 3-Thiol Tautomers. J Chromatogr Sci 2016;55:117-129. [PMID: 27777224 DOI: 10.1093/chromsci/bmw151] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2016] [Revised: 04/19/2016] [Accepted: 09/08/2016] [Indexed: 11/14/2022]
10
Wincel H. Microhydration of Deprotonated Nucleobases. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2016;27:1383-92. [PMID: 27178262 PMCID: PMC4942500 DOI: 10.1007/s13361-016-1411-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/06/2016] [Revised: 04/17/2016] [Accepted: 04/19/2016] [Indexed: 06/05/2023]
11
Li T, Li F, Li Z, Sun C, Tong J, Fang W, Men Z. Influence of strong and weak hydrogen bonds in ices on stimulated Raman scattering. OPTICS LETTERS 2016;41:1297-1300. [PMID: 26977693 DOI: 10.1364/ol.41.001297] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
12
Shao P, Ding LP, Cai JT, Lu C, Liu B, Sun CB. Microhydration effects on the structures and electrophilic properties of cytidine. RSC Adv 2016. [DOI: 10.1039/c6ra11720a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
13
Ho J, Yen H, Shi H, Cheng L, Weng C, Chou W, Chiu C, Cheng P. Microhydration Effects on the Ultrafast Photodynamics of Cytosine: Evidences for a Possible Hydration‐Site Dependence. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201507524] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
14
Ho J, Yen H, Shi H, Cheng L, Weng C, Chou W, Chiu C, Cheng P. Microhydration Effects on the Ultrafast Photodynamics of Cytosine: Evidences for a Possible Hydration‐Site Dependence. Angew Chem Int Ed Engl 2015;54:14772-6. [DOI: 10.1002/anie.201507524] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2015] [Revised: 09/18/2015] [Indexed: 11/10/2022]
15
Yang J, Li S, Zhao H, Song B, Zhang G, Zhang J, Zhu Y, Han J. Molecular recognition and interaction between uracil and urea in solid-state studied by terahertz time-domain spectroscopy. J Phys Chem A 2014;118:10927-33. [PMID: 25386785 DOI: 10.1021/jp506045q] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
16
González E, Lino J, Deriabina A, Herrera JNF, Poltev VI. Interactions of DNA bases with individual water molecules. Molecular mechanics and quantum mechanics computation results vs. experimental data. Biophysics (Nagoya-shi) 2014. [DOI: 10.1134/s0006350913050047] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
17
Theoretical investigation of thione-thiol tautomerism, intermolecular double proton transfer reaction and hydrogen bonding interactions in 4-ethyl-5-(2-hydroxyphenyl)-2H-1,2,4-triazole-3(4H)-thione. COMPUT THEOR CHEM 2013. [DOI: 10.1016/j.comptc.2013.10.001] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
18
Shao P, Kuang XY, Ding LP, Zhao YR. Structures, electrophilic properties, and hydrogen bonds of cytidine, uridine, and their radical anions: Microhydration effects. J Chem Phys 2013;139:024305. [PMID: 23862941 DOI: 10.1063/1.4812500] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
19
Özdemir N, Dayan S, Dayan O, Dinçer M, Kalaycıoğlu NÖ. Experimental and molecular modeling investigation of (E)-N-{2-[(2-hydroxybenzylidene)amino]phenyl}benzenesulfonamide. Mol Phys 2012. [DOI: 10.1080/00268976.2012.742209] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
20
Quantum chemical investigation of the intra- and intermolecular proton transfer reactions and hydrogen bonding interactions in 4-amino-5-(2-hydroxyphenyl)-2H-1,2,4-triazole-3(4H)-thione. J Mol Model 2012;19:397-406. [DOI: 10.1007/s00894-012-1567-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2012] [Accepted: 08/09/2012] [Indexed: 10/27/2022]
21
Stasyuk OA, Szatyłowicz H, Krygowski TM. Effect of the H-bonding on aromaticity of purine tautomers. J Org Chem 2012;77:4035-45. [PMID: 22448684 DOI: 10.1021/jo300406r] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
22
Can anion interaction accelerate transformation of cytosine tautomers? Detailed view form QTAIM analysis. Struct Chem 2012. [DOI: 10.1007/s11224-012-9993-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
23
Cheng Q, Gu J, Compaan KR, Schaefer HF. Isoguanine formation from adenine. Chemistry 2012;18:4877-86. [PMID: 22411110 DOI: 10.1002/chem.201102415] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2011] [Indexed: 11/06/2022]
24
Lu N, Meng L, Chen D, Zhang G. Retracted article: Enantioselectivity of aza-MBH-type reaction of nitroalkene to N-tosylimine catalyzed by thiourea-tertiary amine: a theoretical study. RSC Adv 2011. [DOI: 10.1039/c1ra00015b] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
25
Cheng Q, Gu J, Compaan KR, Schaefer HF. Hydroxyl Radical Reactions with Adenine: Reactant Complexes, Transition States, and Product Complexes. Chemistry 2010;16:11848-58. [DOI: 10.1002/chem.201001236] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
26
Computational study of the intramolecular proton transfer reactions of 3-hydroxytropolone (2,7-dihydroxycyclohepta-2,4,6-trien-1-one) and its dimers. J Mol Model 2010;16:1877-82. [PMID: 20232098 DOI: 10.1007/s00894-010-0674-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2009] [Accepted: 02/02/2010] [Indexed: 10/19/2022]
27
Rasmussen AM, Lind MC, Kim S, Schaefer HF. Hydration of the Lowest Triplet States of the DNA/RNA Pyrimidines. J Chem Theory Comput 2010;6:930-9. [DOI: 10.1021/ct900478c] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
28
Theoretical study of the interaction pattern and the binding affinity between procaine and DNA bases. ACTA ACUST UNITED AC 2010. [DOI: 10.1016/j.theochem.2009.09.039] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
29
Millen AL, Wetmore SD. Glycosidic bond cleavage in deoxynucleotides — A density functional study. CAN J CHEM 2009. [DOI: 10.1139/v09-024] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
30
Almatarneh MH, Flinn CG, Poirier RA. Mechanisms for the Deamination Reaction of Cytosine with H2O/OH− and 2H2O/OH−: A Computational Study. J Chem Inf Model 2008;48:831-43. [DOI: 10.1021/ci7003219] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
31
Zhang G, Ji A, Chen D. Origin of blue and red shifts of C–H and C–N stretching vibrations in formamide–HF/H2O/H2S/NH3 complexes. ACTA ACUST UNITED AC 2008. [DOI: 10.1016/j.theochem.2007.12.019] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
32
Kim S, Schaefer HF. Effects of Microsolvation on the Adenine−Uracil Base Pair and Its Radical Anion:  Adenine−Uracil Mono- and Dihydrates. J Phys Chem A 2007;111:10381-9. [PMID: 17705454 DOI: 10.1021/jp072727g] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
33
Gomes JRB, Ribeiro da Silva MDMC, Freitas VLS, Ribeiro da Silva MAV. Molecular Energetics of Cytosine Revisited:  A Joint Computational and Experimental Study. J Phys Chem A 2007;111:7237-42. [PMID: 17616179 DOI: 10.1021/jp0729009] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
34
Wu R, McMahon TB. Investigation of proton transport tautomerism in clusters of protonated nucleic acid bases (cytosine, uracil, thymine, and adenine) and ammonia by high-pressure mass spectrometry and ab initio calculations. J Am Chem Soc 2007;129:569-80. [PMID: 17227020 DOI: 10.1021/ja065088g] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
35
Mirzaei M, Hadipour NL. Study of hydrogen bonds in 1-methyluracil by DFT calculations of oxygen, nitrogen, and hydrogen quadrupole coupling constants and isotropic chemical shifts. Chem Phys Lett 2007. [DOI: 10.1016/j.cplett.2007.03.011] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
36
Millen AL, Archibald LAB, Hunter KC, Wetmore SD. A kinetic and thermodynamic study of the glycosidic bond cleavage in deoxyuridine. J Phys Chem B 2007;111:3800-12. [PMID: 17388517 DOI: 10.1021/jp063841m] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
37
Hunter KC, Wetmore SD. Environmental Effects on the Enhancement in Natural and Damaged DNA Nucleobase Acidity Because of Discrete Hydrogen-Bonding Interactions. J Phys Chem A 2007;111:1933-42. [PMID: 17302396 DOI: 10.1021/jp066641j] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
38
Kim S, Schaefer HF. Microhydration of cytosine and its radical anion: Cytosine∙(H2O)n (n=1–5). J Chem Phys 2007;126:064301. [PMID: 17313209 DOI: 10.1063/1.2432123] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]  Open
39
Hunter KC, Millen AL, Wetmore SD. Effects of Hydrogen-Bonding and Stacking Interactions with Amino Acids on the Acidity of Uracil. J Phys Chem B 2007;111:1858-71. [PMID: 17256895 DOI: 10.1021/jp066902p] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
40
Tâme Parreira RL, Galembeck SE, Hobza P. On the Origin of Red and Blue Shifts of XH and CH Stretching Vibrations in Formic Acid (Formate Ion) and Proton Donor Complexes. Chemphyschem 2007;8:87-92. [PMID: 17121408 DOI: 10.1002/cphc.200600435] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
41
Kabelác M, Hobza P. Hydration and stability of nucleic acid bases and base pairs. Phys Chem Chem Phys 2007;9:903-17. [PMID: 17301881 DOI: 10.1039/b614420a] [Citation(s) in RCA: 75] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
42
Mirzaei M, Elmi F, Hadipour NL. A Systematic Investigation of Hydrogen-Bonding Effects on the 17O, 14N, and 2H Nuclear Quadrupole Resonance Parameters of Anhydrous and Monohydrated Cytosine Crystalline Structures:  A Density Functional Theory Study. J Phys Chem B 2006;110:10991-6. [PMID: 16771352 DOI: 10.1021/jp060301g] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
43
Hydrogen-bonding between cytosine and water: Computational evidence for a ring-opened complex. Chem Phys Lett 2006. [DOI: 10.1016/j.cplett.2006.02.092] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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