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Vilarrubias P. Electronic spectroscopy of some small anions containing S, N and O using CR-EOM-CCSD(T) method. Mol Phys 2020. [DOI: 10.1080/00268976.2020.1797915] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Pere Vilarrubias
- Generalitat de Catalunya, Departament d’Ensenyament, IES Castelló d’Empúries, Girona, Spain
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2
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Rousselot-Pailley P, Sobanska S, Ferré N, Coussan S. UV Photochemistry of Acetylacetaldehyde Trapped in Cryogenic Matrices. J Phys Chem A 2020; 124:4916-4928. [PMID: 32441945 DOI: 10.1021/acs.jpca.0c02512] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The broad band UV photochemistry of acetylacetaldehyde, the hybrid form between malonaldehyde and acetylacetone (the two other most simple molecules exhibiting an intramolecular proton transfer), trapped in four cryogenic matrices, neon, nitrogen, argon, and xenon, has been studied by IRTF spectroscopy. These experimental results have been supported by B3LYP/6-311G++(2d,2p) calculations in order to get S0 minima together with their harmonic frequencies. On those minima, we have also calculated their vibrationally resolved UV absorption spectra at the time-dependent DFT ωB97XD/6-311++G(2d,2p) level. After deposition, only the two chelated forms are observed while they isomerize upon UV irradiation toward nonchelated species. From UV irradiation effects we have identified several nonchelated isomers, capable, in turn, of isomerizing and fragmenting, even if this last phenomenon seems to be most unlikely due to cryogenic cages confinement. On the basis of these findings, we have attempted a first approach to the reaction path of electronic relaxation. It appeared that, as with acetylacetone, the path of electronic relaxation seems to involve triplet states.
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Affiliation(s)
- P Rousselot-Pailley
- Centrale Marseille, CNRS, iSm2 UMR 7313, Aix-Marseille Université, Marseille, France
| | - S Sobanska
- Institut des Sciences Moléculaires, Université de Bordeaux 1, CNRS UMR 5255, Talence, France
| | - N Ferré
- CNRS, ICR, Aix-Marseille Université,, Marseille, France
| | - S Coussan
- CNRS, PIIM, Aix-Marseille Université, Marseille, France
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3
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Gutiérrez-Quintanilla A, Chevalier M, Platakyte R, Ceponkus J, Crépin C. Selective photoisomerisation of 2-chloromalonaldehyde. J Chem Phys 2019; 150:034305. [PMID: 30660154 DOI: 10.1063/1.5082916] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Isomerization of 2-chloromalonaldehyde (2-ClMA) is explored giving access to new experimental data on this derivative of malonaldehyde, not yet studied much. Experiments were performed isolating 2-ClMA in argon, neon, and para-hydrogen matrices. UV irradiation of the matrix samples induced isomerization to three open enolic forms including two previously observed along with the closed enolic form after deposition. IR spectra of these specific conformers were recorded, and a clear assignment of the observed bands was obtained with the assistance of theoretical calculations. UV spectra of the samples were measured, showing a blue shift of the π* ← π absorption with the opening of the internal hydrogen bond of the most stable enol form. Specific sequences of UV irradiation at different wavelengths allowed us to obtain samples containing only one enol conformer. The formation of conformers is discussed. The observed selectivity of the process among the enol forms is analyzed.
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Affiliation(s)
- Alejandro Gutiérrez-Quintanilla
- Institut des Sciences Moléculaires d'Orsay (ISMO), UMR 8214, CNRS, Université Paris- Sud, Université Paris-Saclay, F-91405 Orsay, France
| | - Michèle Chevalier
- Institut des Sciences Moléculaires d'Orsay (ISMO), UMR 8214, CNRS, Université Paris- Sud, Université Paris-Saclay, F-91405 Orsay, France
| | - Rasa Platakyte
- Institut des Sciences Moléculaires d'Orsay (ISMO), UMR 8214, CNRS, Université Paris- Sud, Université Paris-Saclay, F-91405 Orsay, France
| | - Justinas Ceponkus
- Institute of Chemical Physics, Vilnius University, Sauletekio ave. 9 bat. III, L-10222 Vilnius, Lithuania
| | - Claudine Crépin
- Institut des Sciences Moléculaires d'Orsay (ISMO), UMR 8214, CNRS, Université Paris- Sud, Université Paris-Saclay, F-91405 Orsay, France
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4
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Yang Y, Li D, Li C, Liu Y, Jiang K. Asymmetric substitution changes the UV-induced nonradiative decay pathway and the spectra behaviors of β-diketones. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 207:209-215. [PMID: 30240982 DOI: 10.1016/j.saa.2018.09.026] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2018] [Revised: 09/13/2018] [Accepted: 09/14/2018] [Indexed: 06/08/2023]
Abstract
Asymmetric substitution has not been termed as an essential factor in studying photo-induced ultrafast dynamics of molecular system. Asymmetric 4-hydroxybut-3-en-2-one (HEO), together with symmetric malonaldehyde (MA) and acetylacetone (AA), have been provided as target sample to study the nonradiative decay (ND) processes of β-diketones. An effective ND pathway of the three molecules is presented that their excited second (S2) states transfer to first (S1) state by nonadiabatic surface hopping, and then transfer to triplet (T1) state by crossing minimum energy crossing point (MECP), after which decay to ground (S0) state through MECP. More importantly, the asymmetric substitution of HEO induces the proton transfer in the S1 state and generates a proton-transferred conformer with lowest energy, which does not occur for MA and AA. This change exploits a new ND pathway that the S1 state decays to the proton transferred T1 state and then undergoes reverse proton transfer to S0 state through the MECPs between the three states. The two pathways of HEO give detailed energy and geometric information on surface hopping of S2/S1 and MECPs of S1/T1/S0, and interpret the reason of the ND pathway while not spectra emission. This result is significantly different from the previous reported ND pathway of photoisomerization or conical intersection between different states. This work shows that asymmetric substitution changes the molecular structure and then changes their spectra behaviors.
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Affiliation(s)
- Yonggang Yang
- College of Physics and Materials Science, Henan Normal University, Xinxiang 453007, China
| | - Donglin Li
- College of Physics and Materials Science, Henan Normal University, Xinxiang 453007, China
| | - Chaozheng Li
- College of Physics and Materials Science, Henan Normal University, Xinxiang 453007, China
| | - Yufang Liu
- College of Physics and Materials Science, Henan Normal University, Xinxiang 453007, China.
| | - Kai Jiang
- School of Environment, Henan Normal University, Xinxiang 453007, China
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5
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Etinski M, Ensing B. Puzzle of the Intramolecular Hydrogen Bond of Dibenzoylmethane Resolved by Molecular Dynamics Simulations. J Phys Chem A 2018; 122:5945-5954. [DOI: 10.1021/acs.jpca.8b01930] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Mihajlo Etinski
- Faculty of Physical Chemistry, University of Belgrade Studentski trg 12-16 11000 Belgrade, Serbia
| | - Bernd Ensing
- Van ’t Hoff Institute for Molecular Sciences (HIMS), University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
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6
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Gutiérrez-Quintanilla A, Chevalier M, Platakyte R, Ceponkus J, Rojas-Lorenzo GA, Crépin C. 2-Chloromalonaldehyde, a model system of resonance-assisted hydrogen bonding: vibrational investigation. Phys Chem Chem Phys 2018; 20:12888-12897. [PMID: 29700529 DOI: 10.1039/c7cp06481k] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The chelated enol isomer of 2-chloromalonaldehyde (2-ClMA) is experimentally characterized for the first time by IR and Raman spectroscopies. The spectra are obtained by trapping the molecule in cryogenic matrices and analyzed with the assistance of theoretical calculations. Experiments were performed in argon, neon and para-hydrogen matrices. The results highlight puzzling matrix effects, beyond site effects, which are interpreted as due to a tunneling splitting of the vibrational levels related to the proton transfer along the internal hydrogen bond (IHB). 2-ClMA is thus one of the very few molecules in which the H tunneling has been observed in cryogenic matrices. The comparison with its parent molecule (malonaldehyde) shows experimentally and theoretically the weakening of the IHB upon chlorination, with a reduced cooperative effect in the resonance assisted hydrogen bond. In addition, the Cl substitution induces an important stabilization of two open enol conformers. These two open forms appear in the spectra of as-deposited samples, meaning that, in contrast with other well-studied molecules of the same family (β-dialdehydes and β-diketones), they are present in the gas phase at room temperature.
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Affiliation(s)
- Alejandro Gutiérrez-Quintanilla
- Institut des Sciences Moléculaires d'Orsay (ISMO), UMR 8214, CNRS, Univ. Paris-Sud, Université Paris-Saclay UMR 8214, F-91405 Orsay, France
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7
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Lutz JJ, Duan XF, Ranasinghe DS, Jin Y, Margraf JT, Perera A, Burggraf LW, Bartlett RJ. Valence and charge-transfer optical properties for some Si nC m( m, n≤ 12) clusters: Comparing TD-DFT, complete-basis-limit EOMCC, and benchmarks from spectroscopy. J Chem Phys 2018; 148:174309. [DOI: 10.1063/1.5022701] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Affiliation(s)
- Jesse J. Lutz
- Air Force Institute of Technology, Wright-Patterson Air Force Base, Ohio 45433, USA
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611, USA
| | - Xiaofeng F. Duan
- Air Force Institute of Technology, Wright-Patterson Air Force Base, Ohio 45433, USA
- Air Force Research Laboratory DoD Supercomputing Resource Center, Wright-Patterson Air Force Base, Ohio 45433, USA
| | | | - Yifan Jin
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611, USA
| | - Johannes T. Margraf
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611, USA
| | - Ajith Perera
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611, USA
| | - Larry W. Burggraf
- Air Force Institute of Technology, Wright-Patterson Air Force Base, Ohio 45433, USA
| | - Rodney J. Bartlett
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611, USA
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8
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Trivella A, Wassermann TN, Manca Tanner C, Lüttschwager NOB, Coussan S. UV and IR Photochemistries of Malonaldehyde Trapped in Cryogenic Matrices. J Phys Chem A 2018; 122:2376-2393. [PMID: 29420027 DOI: 10.1021/acs.jpca.7b11980] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
UV and IR photochemistries of malonaldehyde, the simplest molecule exhibiting an intramolecular proton exchange, have been studied in four cryogenic matrices at 4.3 K, N2, Ne, Ar, and Xe. Samples have been irradiated using a UV and IR OPO type tunable laser, and with a broad band UV mercury lamp. UV and IR spectra have been recorded and compared with theoretical calculations carried out at the SAC-CI/6-31++G(d,p) (UV transitions) and B3LYP/6-311++G(2d,2p) (IR spectra) levels of theory. After deposition, the intramolecularly H-bonded form is found exclusively, while several open forms are formed upon UV irradiation. These open forms show ability to interconvert upon UV irradiation too. Some of them are also able to isomerize upon selective IR irradiations. The whole set of results allowed us to identify seven isomers among the eight postulated. The photodynamics of the electronic relaxation of malonaldehyde have also been investigated. By following the decay or rise of suited specific vibrational bands in the IR spectra, and by comparing the results with an earlier study of the homologous acetylacetone, we deduced that the electronic relaxation of malonaldehyde proceeds through singlet states, most probably through a 3-fold conical intersection, as postulated from theoretical calculations. In contrast with acetylacetone, malonaldehyde does not show fragmentation after UV excitation.
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Affiliation(s)
- A Trivella
- Département Génie Biologique, UMR EPOC (5805)-LPTC , IUT de Bordeaux, site de Périgueux , Rue du Doyen Joseph Lajugie , 24000 Périgueux , France
| | - T N Wassermann
- Institüt für Physikalische Chemie , Universität Göttingen , Tammannstrasse 6 , 37077 Göttingen , Germany.,CNRS, PIIM, Laboratoire des Interactions Ioniques et Moléculaires , Aix Marseille Universite , 13397 Marseille Cedex 20, France
| | - C Manca Tanner
- Laboratory of Physical Chemistry , ETH Zurich , Vladimir-Prelog-Weg 1-5/10 , 8093 Zurich , Switzerland
| | - N O B Lüttschwager
- Institüt für Physikalische Chemie , Universität Göttingen , Tammannstrasse 6 , 37077 Göttingen , Germany
| | - S Coussan
- CNRS, PIIM, Laboratoire des Interactions Ioniques et Moléculaires , Aix Marseille Universite , 13397 Marseille Cedex 20, France
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9
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Xie B, Cui G, Fang WH. Multiple-State Nonadiabatic Dynamics Simulation of Photoisomerization of Acetylacetone with the Direct ab Initio QTMF Approach. J Chem Theory Comput 2017; 13:2717-2729. [DOI: 10.1021/acs.jctc.7b00153] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Binbin Xie
- Key Laboratory of Theoretical
and Computational Photochemistry, Ministry of Education, College of
Chemistry, Beijing Normal University, Beijing 100875, China
| | - Ganglong Cui
- Key Laboratory of Theoretical
and Computational Photochemistry, Ministry of Education, College of
Chemistry, Beijing Normal University, Beijing 100875, China
| | - Wei-Hai Fang
- Key Laboratory of Theoretical
and Computational Photochemistry, Ministry of Education, College of
Chemistry, Beijing Normal University, Beijing 100875, China
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10
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Gutiérrez-Quintanilla A, Chevalier M, Crépin C. Double deuterated acetylacetone in neon matrices: infrared spectroscopy, photoreactivity and the tunneling process. Phys Chem Chem Phys 2016; 18:20713-25. [DOI: 10.1039/c6cp02796b] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Open enol conformers of double deuterated acetylacetone are produced by UV and IR irradiation, allowing the analysis of the tunnelling effect between them.
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Affiliation(s)
| | - Michèle Chevalier
- Institut des Sciences Moléculaires d'Orsay (ISMO)
- Bât.210
- UMR 8214
- CNRS
- Univ. Paris-Sud 11
| | - Claudine Crépin
- Institut des Sciences Moléculaires d'Orsay (ISMO)
- Bât.210
- UMR 8214
- CNRS
- Univ. Paris-Sud 11
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11
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Piecuch P, Hansen JA, Ajala AO. Benchmarking the completely renormalised equation-of-motion coupled-cluster approaches for vertical excitation energies. Mol Phys 2015. [DOI: 10.1080/00268976.2015.1076901] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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12
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Verma PK, Koch F, Steinbacher A, Nuernberger P, Brixner T. Ultrafast UV-Induced Photoisomerization of Intramolecularly H-Bonded Symmetric β-Diketones. J Am Chem Soc 2014; 136:14981-9. [DOI: 10.1021/ja508059p] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Pramod Kumar Verma
- Institut für Physikalische
und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Federico Koch
- Institut für Physikalische
und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Andreas Steinbacher
- Institut für Physikalische
und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Patrick Nuernberger
- Institut für Physikalische
und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Tobias Brixner
- Institut für Physikalische
und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
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13
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Xu M, Chai J, Hu N, Huang D, Wang Y, Huang X, Wei H, Yang Z, Zhang Y. Facile synthesis of soluble functional graphene by reduction of graphene oxide via acetylacetone and its adsorption of heavy metal ions. NANOTECHNOLOGY 2014; 25:395602. [PMID: 25208570 DOI: 10.1088/0957-4484/25/39/395602] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The synthesis of graphene (GR) from graphene oxide (GO) typically involves harmful chemical reducing agents that are undesirable for most practical applications. Here we report a green and facile synthesis method for the synthesis of GR that is soluble in water and organic solvents and that includes the additional benefit of adsorption of heavy metal ions. Acetylacetone, as both a reducing agent and a stabilizer, was used to prepare soluble GR from GO. Transmission electron microscopy and atomic force microscopy provide clear evidence for the formation of few-layer GR. The results from Fourier transform infrared spectroscopy and ultraviolet-visible spectroscopy show that reduction of GO to GR has occurred. Raman spectroscopy and X-ray photoelectron spectroscopy also indicate the removal of oxygen-containing functional groups from GO, resulting in the formation of GR. The results of dispersion experiments show that GR can be highly dispersed in water and N,N-Dimethylformamide. The reaction mechanism for acetylacetone reduction of exfoliated GO was also proposed. This method is a facile and environmentally friendly approach to the synthesis of GR and opens up new possibilities for preparing GR and GR-based nanomaterials for large-scale applications. Of even greater interest is that inductively coupled plasma atomic emission spectroscopy suggests that synthesized GR may be applied in the absorption of Cd(2+) and Co(2+) due to the strong coordination capacity of acetylacetone on the surfaces and edges of GR and the large surface area of GR in aqueous solutions. The maximum adsorptions are 49.28 mg g(-1) for Cd(2+), which is 4.5 times higher than that of carbon nanotubes, and 27.78 mg g(-1) for Co(2+), which is 3.6 times higher than that of titania beans.
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Affiliation(s)
- Minghan Xu
- Key Laboratory for Thin Film and Microfabrication of Ministry of Education, Department of Micro/Nano Electronics, School of Electronic Information and Electrical Engineering, Shanghai Jiao Tong University, Shanghai 200240, People's Republic of China
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14
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Lutz JJ, Piecuch P. Performance of the completely renormalized equation-of-motion coupled-cluster method in calculations of excited-state potential cuts of water. COMPUT THEOR CHEM 2014. [DOI: 10.1016/j.comptc.2014.05.008] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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15
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Ómarsson B, Engmann S, Ingólfsson O. Dissociative electron attachment to the complexation ligands hexafluoroacetylacetone, trifluoroacetylacetone and acetylacetone; a comparative experimental and theoretical study. RSC Adv 2014. [DOI: 10.1039/c4ra04451g] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Influence of fluorination on the negative ion resonances and dissociation dynamics in electron attachment to acetylacetone, trifluoroacetylacetone and hexafluoroacetylacetone are explored through calculations and experiments.
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16
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Hu HS, Kowalski K. Excitation Energies with Cost-Reduced Variant of the Active-Space EOMCCSDT Method: The EOMCCSDt-3̅ Approach. J Chem Theory Comput 2013; 9:4761-8. [DOI: 10.1021/ct400501z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Han-Shi Hu
- William R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory , K8-91, P.O.Box 999, Richland, Washington 99352, United States
| | - Karol Kowalski
- William R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory , K8-91, P.O.Box 999, Richland, Washington 99352, United States
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17
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Detection of tautomer proportions of dimedone in solution: a new approach based on theoretical and FT-IR viewpoint. J Comput Aided Mol Des 2013; 27:681-8. [DOI: 10.1007/s10822-013-9669-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2013] [Accepted: 07/31/2013] [Indexed: 11/26/2022]
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18
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Kornobis K, Kumar N, Lodowski P, Jaworska M, Piecuch P, Lutz JJ, Wong BM, Kozlowski PM. Electronic structure of the S1state in methylcobalamin: Insight from CASSCF/MC-XQDPT2, EOM-CCSD, and TD-DFT calculations. J Comput Chem 2013; 34:987-1004. [DOI: 10.1002/jcc.23204] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2012] [Revised: 10/25/2012] [Accepted: 11/19/2012] [Indexed: 11/12/2022]
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19
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Karabulut S, Namlı H. An FT-IR and DFT based new approach for the detection of tautomer proportions in solution. J Mol Struct 2012. [DOI: 10.1016/j.molstruc.2012.05.029] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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20
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Lozada-García RR, Ceponkus J, Chevalier M, Chin W, Mestdagh JM, Crépin C. Photochemistry of acetylacetone isolated in parahydrogen matrices upon 266 nm irradiation. Phys Chem Chem Phys 2012; 14:3450-9. [DOI: 10.1039/c2cp23913b] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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21
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Shifts in Excitation Energies Induced by Hydrogen Bonding: A Comparison of the Embedding and Supermolecular Time-Dependent Density Functional Theory Calculations with the Equation-of-Motion Coupled-Cluster Results. ACTA ACUST UNITED AC 2011. [DOI: 10.1007/978-94-007-2076-3_13] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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22
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Cao Z, Walter C, Landfester K, Wu Z, Ziener U. Synthesis of silver/poly(2-hydroxyethyl methacrylate) particles via a combination of inverse miniemulsion and silver ion reduction in a "nanoreactor". LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2011; 27:9849-9859. [PMID: 21732695 DOI: 10.1021/la202116s] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Silver salt/poly(2-hydroxyethyl methacrylate) (poly(HEMA)) hybrid particles were first prepared by inverse miniemulsion polymerization of 2-hydroxyethyl methacrylate (HEMA) with silver tetrafluoroborate (AgBF(4)) as a lipophobe. High silver salt loads of up to 13% with respect to the disperse phase were achieved. The silver/poly(HEMA) hybrid particles were subsequently formed via a gas-phase in situ reduction of AgBF(4) by hydrazine on the surfaces of silver salt/poly(HEMA) particles. The formation of silver nanoparticles was confirmed by UV-vis spectroscopy and X-ray diffraction. The morphology of the hybrid particles of silver salt/poly(HEMA) and silver/poly(HEMA) was fully characterized by transmission electron microscopy (TEM), atomic force microscopy (AFM), and dynamic light scattering (DLS). The influence of the reaction parameters including the type and amount of cosolvent, salt content, and type of surfactant on the particle properties and colloidal stability during the reduction process was thoroughly investigated.
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Affiliation(s)
- Zhihai Cao
- Institute of Organic Chemistry III-Macromolecular Chemistry and Organic Materials, University of Ulm, Albert-Einstein-Allee 11, 89081 Ulm, Germany
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23
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Rana DK, Dhar S, Sarkar A, Bhattacharya SC. Dual Intramolecular Hydrogen Bond as a Switch for Inducing Ground and Excited State Intramolecular Double Proton Transfer in Doxorubicin: An Excitation Wavelength Dependence Study. J Phys Chem A 2011; 115:9169-79. [DOI: 10.1021/jp204165j] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Dipak Kumar Rana
- Department of Chemistry, Jadavpur University, Kolkata−700032, India
| | - Sayaree Dhar
- Department of Chemistry, Jadavpur University, Kolkata−700032, India
| | - Arindam Sarkar
- Department of Chemistry, Jadavpur University, Kolkata−700032, India
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24
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Delchev VB, Shterev IG. Photoinduced disruption of the strong intramolecular H-bond in the enol form of acetylacetone: Mechanisms of radiationless decay. COMPUT THEOR CHEM 2011. [DOI: 10.1016/j.comptc.2011.04.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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25
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Fradelos G, Lutz JJ, Wesołowski TA, Piecuch P, Włoch M. Embedding vs Supermolecular Strategies in Evaluating the Hydrogen-Bonding-Induced Shifts of Excitation Energies. J Chem Theory Comput 2011. [DOI: 10.1021/ct200101x] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Georgios Fradelos
- Département de Chimie Physique, Université de Genève, 30, quai Ernest-Ansermet, CH-1211 Genève 4, Switzerland
| | - Jesse J. Lutz
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States
| | - Tomasz A. Wesołowski
- Département de Chimie Physique, Université de Genève, 30, quai Ernest-Ansermet, CH-1211 Genève 4, Switzerland
| | - Piotr Piecuch
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States
| | - Marta Włoch
- Department of Chemistry, Michigan Technological University, Houghton, Michigan 49931, United States
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Gour JR, Piecuch P, Włoch M. Comparison of the completely renormalized equation-of-motion coupled-cluster and Quantum Monte Carlo results for the low-lying electronic states of methylene. Mol Phys 2010. [DOI: 10.1080/00268976.2010.518573] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Jeffrey R. Gour
- a Department of Chemistry , Michigan State University , East Lansing , Michigan 48824 , USA
| | - Piotr Piecuch
- a Department of Chemistry , Michigan State University , East Lansing , Michigan 48824 , USA
| | - Marta Włoch
- b Department of Chemistry , Michigan Technological University , Houghton , Michigan 49931 , USA
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Chatterjee C, Incarvito CD, Burns LA, Vaccaro PH. Electronic Structure and Proton Transfer in Ground-State Hexafluoroacetylacetone. J Phys Chem A 2010; 114:6630-40. [DOI: 10.1021/jp101224e] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Chandrima Chatterjee
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, Connecticut 06520-8107
| | | | - Lori A. Burns
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, Connecticut 06520-8107
| | - Patrick H. Vaccaro
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, Connecticut 06520-8107
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28
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Trivella A, Wassermann TN, Mestdagh JM, Manca Tanner C, Marinelli F, Roubin P, Coussan S. New insights into the photodynamics of acetylacetone: isomerization and fragmentation in low-temperature matrixes. Phys Chem Chem Phys 2010; 12:8300-10. [DOI: 10.1039/c003593a] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Affiliation(s)
- A Trivella
- Laboratoire Physique des Interactions Ioniques et Moléculaires, UMR 6633, Université de Provence-CNRS, Centre St-Jérôme, 13397 Marseille Cedex 20, France
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29
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Epifanovsky E, Kowalski K, Fan PD, Valiev M, Matsika S, Krylov AI. On the Electronically Excited States of Uracil. J Phys Chem A 2008; 112:9983-92. [DOI: 10.1021/jp803758q] [Citation(s) in RCA: 103] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Evgeny Epifanovsky
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, Pacific Northwest National Laboratory, Richland, Washington 99352, and Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122
| | - Karol Kowalski
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, Pacific Northwest National Laboratory, Richland, Washington 99352, and Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122
| | - Peng-Dong Fan
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, Pacific Northwest National Laboratory, Richland, Washington 99352, and Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122
| | - Marat Valiev
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, Pacific Northwest National Laboratory, Richland, Washington 99352, and Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122
| | - Spiridoula Matsika
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, Pacific Northwest National Laboratory, Richland, Washington 99352, and Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122
| | - Anna I. Krylov
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, Pacific Northwest National Laboratory, Richland, Washington 99352, and Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122
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30
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Nie D, Bian Z, Yu A, Chen Z, Liu Z, Huang C. Ground and excited state intramolecular proton transfer controlled intramolecular charge separation and recombination: A new type of charge and proton transfer reaction. Chem Phys 2008. [DOI: 10.1016/j.chemphys.2008.02.065] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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31
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Poisson L, Roubin P, Coussan S, Soep B, Mestdagh JM. Ultrafast Dynamics of Acetylacetone (2,4-Pentanedione) in the S2 State. J Am Chem Soc 2008; 130:2974-83. [DOI: 10.1021/ja0730819] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Lionel Poisson
- Laboratoire Francis Perrin (CNRS-URA-2453), DSM/IRAMIS/Service des Photons, Atomes et Molécules, C.E.A. Saclay, F-91191 Gif-sur-Yvette cedex, France, and Laboratoire de Physique des Interactions Ioniques et Moléculaires, CNRS-UMR-6633, Université de Provence, Centre St-Jérôme, F-13397 Marseille cedex 20, France
| | - Pascale Roubin
- Laboratoire Francis Perrin (CNRS-URA-2453), DSM/IRAMIS/Service des Photons, Atomes et Molécules, C.E.A. Saclay, F-91191 Gif-sur-Yvette cedex, France, and Laboratoire de Physique des Interactions Ioniques et Moléculaires, CNRS-UMR-6633, Université de Provence, Centre St-Jérôme, F-13397 Marseille cedex 20, France
| | - Stéphane Coussan
- Laboratoire Francis Perrin (CNRS-URA-2453), DSM/IRAMIS/Service des Photons, Atomes et Molécules, C.E.A. Saclay, F-91191 Gif-sur-Yvette cedex, France, and Laboratoire de Physique des Interactions Ioniques et Moléculaires, CNRS-UMR-6633, Université de Provence, Centre St-Jérôme, F-13397 Marseille cedex 20, France
| | - Benoît Soep
- Laboratoire Francis Perrin (CNRS-URA-2453), DSM/IRAMIS/Service des Photons, Atomes et Molécules, C.E.A. Saclay, F-91191 Gif-sur-Yvette cedex, France, and Laboratoire de Physique des Interactions Ioniques et Moléculaires, CNRS-UMR-6633, Université de Provence, Centre St-Jérôme, F-13397 Marseille cedex 20, France
| | - Jean-Michel Mestdagh
- Laboratoire Francis Perrin (CNRS-URA-2453), DSM/IRAMIS/Service des Photons, Atomes et Molécules, C.E.A. Saclay, F-91191 Gif-sur-Yvette cedex, France, and Laboratoire de Physique des Interactions Ioniques et Moléculaires, CNRS-UMR-6633, Université de Provence, Centre St-Jérôme, F-13397 Marseille cedex 20, France
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32
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Włoch M, Gour JR, Piecuch P. Extension of the renormalized coupled-cluster methods exploiting left eigenstates of the similarity-transformed hamiltonian to open-shell systems: a benchmark study. J Phys Chem A 2008; 111:11359-82. [PMID: 17973457 DOI: 10.1021/jp072535l] [Citation(s) in RCA: 143] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
The recently formulated completely renormalized coupled-cluster method with singles, doubles, and noniterative triples, exploiting the biorthogonal form of the method of moments of coupled-cluster equations (Piecuch, P.; Włoch, M. J. Chem. Phys. 2005, 123, 224105; Piecuch, P.; Włoch, M.; Gour, J. R.; Kinal, A. Chem. Phys. Lett. 2006, 418, 467), termed CR-CC(2,3), is extended to open-shell systems. Test calculations for bond breaking in the OH radical and the F2+ ion and singlet-triplet gaps in the CH2, HHeH, and (HFH)- biradical systems indicate that the CR-CC(2,3) approach employing the restricted open-shell Hartree--Fock (ROHF) reference is significantly more accurate than the widely used CCSD(T) method and other noniterative triples coupled-cluster approximations without making the calculations substantially more expensive. A few molecular examples, including the activation energies of the C2H4 + H --> C2H5 forward and reverse reactions and the triplet states of the CH2 and H2Si2O2 biradicals, are used to show that the dependence of the ROHF-based CR-CC(2,3) energies on the method of canonicalization of the ROHF orbitals is, for all practical purposes, negligible.
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Affiliation(s)
- Marta Włoch
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, USA
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33
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Le Guével X, Palazzesi C, Prosposito P, Della Giustina G, Brusatin G. Influence of chelating agents on the photopolymerization of hybrid Ti-based waveguides. ACTA ACUST UNITED AC 2008. [DOI: 10.1039/b802257g] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Abstract
The energies of the kinetically inert, electronically saturated Lukehart-type metalla-beta-diketone [Re{(COMe)2H}(CO)4] (9 a) and of the kinetically labile, electronically unsaturated platina-beta-diketones [Pt{(COMe)2H}Cl2]- (10 a), [Pt2{(COMe)2H}2(micro-Cl)2] (11 a), and [Pt{(COMe)2H}(bpy)]+ (12 a) have been calculated by DFT at the B3LYP/6-311++G(d,p) level using effective core potentials with consideration of relativistic effects for the transition metals. Analogously, energies of the requisite open (non-hydrogen-bonded) equilibrium conformers (9 b, 10 c, 11 b, 12 b) and energies which were obtained from the hydrogen-bonded conformers by rigid rotation of the OH group around the C--O bond by 180 degrees followed by relaxation of all bond lengths and angles (9 c, 10 d, 11 c, 12 d) have been calculated. These energies were found to be higher by 14.7/27.2 (9 b/9 c), 20.7/27.2 (10 c/10 d), 19.2/25.7 (11 b/11 c), and 9.4/19.6 kcal mol(-1) (12 b/12 d) than those of the intramolecularly O--HO hydrogen-bonded metalla-beta-diketones 9 a, 10 a, 11 a, and 12 a, respectively. In acetylacetone (Hacac), the generic organic analogue of metalla-beta-diketones, the energies of the most stable non-hydrogen-bonded enol isomer (6 b) and of the conformer derived from the H-bonded form by rigid rotation of the OH group by 180 degrees followed by subsequent relaxation of all bond lengths and angles (6 k) were found to be 10.9/16.1 kcal mol(-1) (6 b/6 k) higher compared to the intramolecularly O--HO bonded isomer 6 a. Thus, the hydrogen bonds in metalla-beta- diketones must be regarded as strong and were found to be up to twice as strong as that in acetylacetone. A linear relationship was found between the hydrogen-bond energies based on the rigidly rotated structures and the OO separation in the hydrogen-bonded structures. Furthermore, these energies were also found to be correlated with the electron densities at the OH bond critical points (rhobcp) in the O--HO bonds of metalla-beta-diketones 9 a, 10 a, 11 a, and 12 a (calculated using the AIM theory). The comparison of the energies of the doubly intermolecularly hydrogen-bonded dinuclear platina-beta-diketone [{Pt{(COMe)2H}(bpy)}2]2+ (14) with that of the mononuclear intramolecularly hydrogen-bonded cation [Pt{(COMe)2H}(bpy)]+ (12 a) showed that the intermolecular hydrogen bonds in 14 are weaker than the intramolecular hydrogen bond in 12.
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Affiliation(s)
- Dirk Steinborn
- Institut für Chemie-Anorganische Chemie, Martin-Luther-Universität Halle-Wittenberg, Kurt-Mothes-Strasse 2, 06120 Halle, Germany.
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35
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Structure of Low-Lying Excited States of Guanine in DNA and Solution: Combined Molecular Mechanics and High-Level Coupled Cluster Studies. ACTA ACUST UNITED AC 2007. [DOI: 10.1155/2007/85978] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
High-level ab-initio equation-of-motion coupled-cluster methods with singles, doubles, and noniterative triples are used, in conjunction with the combined quantum mechanical molecular mechanics approach, to investigate the structure of low-lying
excited states of the guanine base in DNA and solvated environments. Our results indicate that while the excitation energy of the first excited state is barely changed compared to its gas-phase counterpart, the excitation energy of the second excited
state is blue-shifted by 0.24 eV.
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36
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Kowalski K, Hammond JR, de Jong WA. Linear response coupled cluster singles and doubles approach with modified spectral resolution of the similarity transformed Hamiltonian. J Chem Phys 2007; 127:164105. [DOI: 10.1063/1.2795708] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
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37
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Mohacek-Grosev V, Furić K, Ivanković H. Luminescence and Raman Spectra of Acetylacetone at Low Temperatures. J Phys Chem A 2007; 111:5820-7. [PMID: 17566988 DOI: 10.1021/jp067157j] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Raman spectra of acetylacetone were recorded for molecules isolated in an argon matrix at 10 K and for a polycrystalline sample. In the solid sample, broad bands appear superimposed on a much weaker Raman spectrum corresponding mainly to the stable enol form. The position of these bands depends on the excitation wavelength (514.5 and 488.8 nm argon ion laser lines were used), sample temperature, and cooling history. They are attributed to transitions from an excited electronic state to various isomer states in the ground electronic state. Laser photons have energies comparable to energies of a number of excited triplet states predicted for a free acetylacetone molecule (Chen, X.-B.; Fang, W.-H.; Phillips, D. L. J. Phys. Chem. A 2006, 110, 4434). Since singlet-to-triplet photon absorption transitions are forbidden, states existing in the solid have mixed singlet/triplet character. Their decay results in population of different isomer states, which except for the lowest isomers SYN enol, TS2 enol (described in Matanović I.; Doslić, N. J. Phys. Chem. A 2005, 109, 4185), and the keto form, which can be detected in the Raman spectra of the solid, are not vibrationally resolved. Differential scanning calorimetry detected two signals upon cooling of acetylacetone, one at 229 K and one at 217 K, while upon heating, they appear at 254 and 225 K. The phase change at higher temperature is attributed to a freezing/melting transition, while the one at lower temperature seems to correspond to freezing/melting of keto domains, as suggested by Johnson et al. (Johnson, M. R.; Jones, N. H.; Geis, A; Horsewill. A. J.; Trommsdorff, H. P. J. Chem. Phys. 2002, 116, 5694). Using matrix isolation in argon, the vibrational spectrum of acetylacetone at 10 K was recorded. Strong bands at 1602 and 1629 cm(-1) are assigned as the SYN enol bands, while a weaker underlying band at 1687 cm(-1) and a medium shoulder at 1617 cm(-1) are assigned as TS2 enol bands.
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Affiliation(s)
- Vlasta Mohacek-Grosev
- Ruder Bosković Institute, P.O. Box 180, Bijenicka c. 54, 10002 Zagreb, Croatia, and Faculty of Chemical Engineering and Technology, Marulićev trg 19, 10000 Zagreb, Croatia.
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Trivella A, Roubin P, Theulé P, Rajzmann M, Coussan S, Manca C. UV and IR Photoisomerization of Acetylacetone Trapped in a Nitrogen Matrix. J Phys Chem A 2007; 111:3074-81. [PMID: 17394292 DOI: 10.1021/jp068763h] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
UV- and IR-induced photoisomerization of acetylacetone trapped in a nitrogen matrix at 4.3 K have been carried out using a tunable optical parametric oscillator type laser, or a mercury vapor lamp, coupled with Fourier Transform IR and UV spectroscopies. After deposition, the main form present in the cryogenic matrix is that chelated (enol). Upon UV irradiation, the intramolecular H bond is broken leading to nonchelated isomers among seven possible open forms. These forms have then been irradiated by resonant pi* <-- pi UV irradiation, or by resonant nuOH irradiation. The selective UV irradiation allows us to suggest a first vibrational assignment while the nuOH irradiation leads us to observe interconversions between the nonchelated isomers. In order to support our vibrational assignment, we have carried out theoretical calculations at the B3LYP/6-311++G(2d,2p) level of theory. This study shows that only five isomers are observed among eight postulated.
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Affiliation(s)
- A Trivella
- Laboratoire Physique des Interactions Ioniques et Moléculaires, UMR 6633, Université de Provence-CNRS, Centre St-Jérôme, 13397 Marseille Cedex 20, France
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Broadbent SA, Burns LA, Chatterjee C, Vaccaro PH. Investigation of electronic structure and proton transfer in ground state acetylacetone. Chem Phys Lett 2007. [DOI: 10.1016/j.cplett.2006.11.107] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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40
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Evangelista FA, Allen WD, Schaefer HF. High-order excitations in state-universal and state-specific multireference coupled cluster theories: Model systems. J Chem Phys 2006; 125:154113. [PMID: 17059245 DOI: 10.1063/1.2357923] [Citation(s) in RCA: 201] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
For the first time high-order excitations (n>2) have been studied in three multireference couple cluster (MRCC) theories built on the wave operator formalism: (1) the state-universal (SU) method of Jeziorski and Monkhorst (JM) (2) the state-specific Brillouin-Wigner (BW) coupled cluster method, and (3) the state-specific MRCC approach of Mukherjee (Mk). For the H4, P4, BeH(2), and H8 models, multireference coupled cluster wave functions, with complete excitations ranging from doubles to hextuples, have been computed with a new arbitrary-order string-based code. Comparison is then made to corresponding single-reference coupled cluster and full configuration interaction (FCI) results. For the ground states the BW and Mk methods are found, in general, to provide more accurate results than the SU approach at all levels of truncation of the cluster operator. The inclusion of connected triple excitations reduces the nonparallelism error in singles and doubles MRCC energies by a factor of 2-10. In the BeH(2) and H8 models, the inclusion of all quadruple excitations yields absolute energies within 1 kcal mol(-1) of the FCI limit. While the MRCC methods are very effective in multireference regions of the potential energy surfaces, they are outperformed by single-reference CC when one electronic configuration dominates.
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41
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Non-iterative coupled-cluster methods employing multi-reference perturbation theory wave functions. ACTA ACUST UNITED AC 2006. [DOI: 10.1016/j.theochem.2006.03.014] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Trabanino RJ, Vaidehi N, Goddard WA. Exploring the Molecular Mechanism for Color Distinction in Humans. J Phys Chem B 2006; 110:17230-9. [PMID: 16928022 DOI: 10.1021/jp057144q] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We examine here the role of the red, green, and blue human opsin structures in modulating the absorption properties of 11-cis-retinal bonded to the protein via a protonated Schiff base (PSB). We built the three-dimensional structures of the human red, green, and blue opsins using homology modeling techniques with the crystal structure of bovine rhodopsin as the template. We then used quantum mechanics (QM) combined with molecular mechanics (MM) (denoted as QM/MM) techniques in conjunction with molecular dynamics to determine how the room temperature molecular structures of the three human color opsin proteins modulate the absorption frequency of the same bound 11-cis-retinal chromophore to account for the differences in the observed absorption spectra. We find that the conformational twisting of the 11-cis-retinal PSB plays an important role in the green to blue opsin shift, whereas the dipolar side chains in the binding pocket play a surprising role of red-shifting the blue opsin with respect to the green opsin, as a fine adjustment to the opsin shift. The dipolar side chains play a large role in the opsin shift from red to green.
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Affiliation(s)
- Rene J Trabanino
- Materials and Process Simulation Center (139-74), California Institute of Technology, Pasadena, California 91125, USA
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