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For: Heck A, Woiczikowski PB, Kubař T, Giese B, Elstner M, Steinbrecher TB. Charge transfer in model peptides: obtaining Marcus parameters from molecular simulation. J Phys Chem B 2012;116:2284-93. [PMID: 22260641 DOI: 10.1021/jp2086297] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Number Cited by Other Article(s)
1
Pann J, Viertl W, Roithmeyer H, Pehn R, Hofer TS, Brüggeller P. Insights into Proton Coupled Electron Transfer in the Field of Artificial Photosynthesis. Isr J Chem 2022. [DOI: 10.1002/ijch.202100035] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
2
Role of intramolecular hydrogen bonds in promoting electron flow through amino acid and oligopeptide conjugates. Proc Natl Acad Sci U S A 2021;118:2026462118. [PMID: 33707214 DOI: 10.1073/pnas.2026462118] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
3
Osella S. Artificial Photosynthesis: Is Computation Ready for the Challenge Ahead? NANOMATERIALS 2021;11:nano11020299. [PMID: 33498961 PMCID: PMC7911014 DOI: 10.3390/nano11020299] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Revised: 01/19/2021] [Accepted: 01/20/2021] [Indexed: 12/13/2022]
4
Wörner S, Leier J, Michenfelder NC, Unterreiner A, Wagenknecht H. Directed Electron Transfer in Flavin Peptides with Oligoproline-Type Helical Conformation as Models for Flavin-Functional Proteins. ChemistryOpen 2020;9:1264-1269. [PMID: 33318882 PMCID: PMC7729625 DOI: 10.1002/open.202000199] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2020] [Revised: 10/23/2020] [Indexed: 11/26/2022]  Open
5
Mapping hole hopping escape routes in proteins. Proc Natl Acad Sci U S A 2019;116:15811-15816. [PMID: 31341081 DOI: 10.1073/pnas.1906394116] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
6
Sato M, Kumada A, Hidaka K. Multiscale modeling of charge transfer in polymers with flexible backbones. Phys Chem Chem Phys 2019;21:1812-1819. [DOI: 10.1039/c8cp05558k] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
7
Khosa M, Ullah A. Mechanistic insight into protein supported biosorption complemented by kinetic and thermodynamics perspectives. Adv Colloid Interface Sci 2018;261:28-40. [PMID: 30301519 DOI: 10.1016/j.cis.2018.09.004] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2018] [Revised: 09/17/2018] [Accepted: 09/25/2018] [Indexed: 10/28/2022]
8
López-Estrada O, Laguna HG, Barrueta-Flores C, Amador-Bedolla C. Reassessment of the Four-Point Approach to the Electron-Transfer Marcus-Hush Theory. ACS OMEGA 2018;3:2130-2140. [PMID: 31458519 PMCID: PMC6641260 DOI: 10.1021/acsomega.7b01425] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2017] [Accepted: 02/08/2018] [Indexed: 05/25/2023]
9
Puiu M, Bala C. Peptide-based biosensors: From self-assembled interfaces to molecular probes in electrochemical assays. Bioelectrochemistry 2017;120:66-75. [PMID: 29182910 DOI: 10.1016/j.bioelechem.2017.11.009] [Citation(s) in RCA: 59] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2017] [Revised: 11/21/2017] [Accepted: 11/21/2017] [Indexed: 02/06/2023]
10
Martin DR, Matyushov DV. Electron-transfer chain in respiratory complex I. Sci Rep 2017;7:5495. [PMID: 28710385 PMCID: PMC5511282 DOI: 10.1038/s41598-017-05779-y] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2017] [Accepted: 06/01/2017] [Indexed: 12/23/2022]  Open
11
Oberhofer H, Reuter K, Blumberger J. Charge Transport in Molecular Materials: An Assessment of Computational Methods. Chem Rev 2017. [PMID: 28644623 DOI: 10.1021/acs.chemrev.7b00086] [Citation(s) in RCA: 191] [Impact Index Per Article: 27.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
12
Seyedi SS, Waskasi MM, Matyushov DV. Theory and Electrochemistry of Cytochrome c. J Phys Chem B 2017;121:4958-4967. [PMID: 28443664 DOI: 10.1021/acs.jpcb.7b00917] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
13
Gillet N, Berstis L, Wu X, Gajdos F, Heck A, de la Lande A, Blumberger J, Elstner M. Electronic Coupling Calculations for Bridge-Mediated Charge Transfer Using Constrained Density Functional Theory (CDFT) and Effective Hamiltonian Approaches at the Density Functional Theory (DFT) and Fragment-Orbital Density Functional Tight Binding (FODFTB) Level. J Chem Theory Comput 2016;12:4793-4805. [DOI: 10.1021/acs.jctc.6b00564] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
14
Joy S, Sureshbabu VV, Periyasamy G. Computational Studies on Structural, Excitation, and Charge-Transfer Properties of Ureidopeptidomimetics. J Phys Chem B 2016;120:6469-78. [PMID: 27314639 DOI: 10.1021/acs.jpcb.6b02210] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
15
Yamamoto T, Dai J, Jacobsen NE, Ammam M, Hall GB, Mozziconacci O, Schöneich C, Wilson GS, Glass RS. Neighboring π-Amide Participation in Thioether Oxidation: Conformational Control. Org Lett 2016;18:3522-5. [DOI: 10.1021/acs.orglett.6b01309] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
16
Donoli A, Marcuzzo V, Moretto A, Crisma M, Toniolo C, Cardena R, Bisello A, Santi S. New bis-ferrocenyl end-capped peptides: synthesis and charge transfer properties. Biopolymers 2016;100:14-24. [PMID: 23335164 DOI: 10.1002/bip.22197] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2012] [Revised: 09/26/2012] [Accepted: 10/30/2012] [Indexed: 01/19/2023]
17
Shah A, Adhikari B, Martic S, Munir A, Shahzad S, Ahmad K, Kraatz HB. Electron transfer in peptides. Chem Soc Rev 2015;44:1015-27. [PMID: 25619931 DOI: 10.1039/c4cs00297k] [Citation(s) in RCA: 92] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
18
Kubas A, Gajdos F, Heck A, Oberhofer H, Elstner M, Blumberger J. Electronic couplings for molecular charge transfer: benchmarking CDFT, FODFT and FODFTB against high-level ab initio calculations. II. Phys Chem Chem Phys 2015;17:14342-54. [PMID: 25573447 DOI: 10.1039/c4cp04749d] [Citation(s) in RCA: 102] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
19
de la Lande A, Gillet N, Chen S, Salahub DR. Progress and challenges in simulating and understanding electron transfer in proteins. Arch Biochem Biophys 2015;582:28-41. [PMID: 26116376 DOI: 10.1016/j.abb.2015.06.016] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2015] [Revised: 06/15/2015] [Accepted: 06/22/2015] [Indexed: 11/19/2022]
20
Monney NPA, Bally T, Giese B. Electronic Structure of Hole-Conducting States in Polyprolines. J Phys Chem B 2015;119:6584-90. [DOI: 10.1021/acs.jpcb.5b02580] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
21
Plehn T, Megow J, May V. Concerted charge and energy transfer processes in a highly flexible fullerene-dye system: a mixed quantum-classical study. Phys Chem Chem Phys 2015;16:12949-58. [PMID: 24852441 DOI: 10.1039/c4cp01081g] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
22
Kubas A, Hoffmann F, Heck A, Oberhofer H, Elstner M, Blumberger J. Electronic couplings for molecular charge transfer: benchmarking CDFT, FODFT, and FODFTB against high-level ab initio calculations. J Chem Phys 2014;140:104105. [PMID: 24628150 DOI: 10.1063/1.4867077] [Citation(s) in RCA: 127] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]  Open
23
Heck A, Woiczikowski PB, Kubař T, Welke K, Niehaus T, Giese B, Skourtis S, Elstner M, Steinbrecher TB. Fragment Orbital Based Description of Charge Transfer in Peptides Including Backbone Orbitals. J Phys Chem B 2014;118:4261-72. [DOI: 10.1021/jp408907g] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
24
Nguyen TX, Grampp G, Yurkovskaya A, Lukzen N. Kinetics of the oxidation of thymine and thymidine by triplet 2,2'-dipyridyl in aqueous solutions at different pH values. J Phys Chem A 2013;117:7655-60. [PMID: 23906227 PMCID: PMC3751068 DOI: 10.1021/jp4022882] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2013] [Revised: 06/21/2013] [Indexed: 01/20/2023]
25
Jiang N, Kuznetsov A, Nocek JM, Hoffman BM, Crane BR, Hu X, Beratan DN. Distance-independent charge recombination kinetics in cytochrome c-cytochrome c peroxidase complexes: compensating changes in the electronic coupling and reorganization energies. J Phys Chem B 2013;117:9129-41. [PMID: 23895339 PMCID: PMC3809023 DOI: 10.1021/jp401551t] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
26
Kubař T, Elstner M. A hybrid approach to simulation of electron transfer in complex molecular systems. J R Soc Interface 2013;10:20130415. [PMID: 23883952 DOI: 10.1098/rsif.2013.0415] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
27
McCullagh M, Voth GA. Unraveling the Role of the Protein Environment for [FeFe]-Hydrogenase: A New Application of Coarse-Graining. J Phys Chem B 2013;117:4062-71. [DOI: 10.1021/jp402441s] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
28
Paltrinieri L, Borsari M, Ranieri A, Battistuzzi G, Corni S, Bortolotti CA. The Active Site Loop Modulates the Reorganization Energy of Blue Copper Proteins by Controlling the Dynamic Interplay with Solvent. J Phys Chem Lett 2013;4:710-715. [PMID: 26281923 DOI: 10.1021/jz302125k] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
29
Skourtis SS. Reviewprobing protein electron transfer mechanisms from the molecular to the cellular length scales. Biopolymers 2013;100:82-92. [DOI: 10.1002/bip.22169] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2012] [Revised: 09/14/2012] [Accepted: 09/23/2012] [Indexed: 11/10/2022]
30
Amadei A, Daidone I, Bortolotti CA. A general statistical mechanical approach for modeling redox thermodynamics: the reaction and reorganization free energies. RSC Adv 2013. [DOI: 10.1039/c3ra42842g] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]  Open
31
Blumberger J, McKenna KP. Constrained density functional theory applied to electron tunnelling between defects in MgO. Phys Chem Chem Phys 2013;15:2184-96. [DOI: 10.1039/c2cp42537h] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
32
Oberhofer H, Blumberger J. Revisiting electronic couplings and incoherent hopping models for electron transport in crystalline C60 at ambient temperatures. Phys Chem Chem Phys 2012;14:13846-52. [PMID: 22858858 DOI: 10.1039/c2cp41348e] [Citation(s) in RCA: 72] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
33
Lauz M, Eckhardt S, Fromm KM, Giese B. The influence of dipole moments on the mechanism of electron transfer through helical peptides. Phys Chem Chem Phys 2012;14:13785-8. [PMID: 22729294 DOI: 10.1039/c2cp41159h] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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