1
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Wiloch MZ, Baran N, Jonsson-Niedziolka M. The Influence of Coordination Mode on the Redox Properties of Copper Complexes with Aβ(3‐16) and its Pyroglutamate Counterpart pAβ(3‐16). ChemElectroChem 2022. [DOI: 10.1002/celc.202200623] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Magdalena Z. Wiloch
- Institute of Physical Chemistry PAS: Polska Akademia Nauk Instytut Chemii Fizycznej Department of Electrode Processes POLAND
| | - Natalia Baran
- Institute of Physical Chemistry PAS: Polska Akademia Nauk Instytut Chemii Fizycznej Department of Electrode Processes POLAND
| | - Martin Jonsson-Niedziolka
- Institute of Physical Chemistry, PAS Department of electrode processes Kasprzaka 44/52 01-224 Warsaw POLAND
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2
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Arrigoni F, Di Carlo C, Rovetta A, De Gioia L, Zampella G, Bertini L. Superoxide reduction by Cu‐Amyloid Beta peptide complexes. A Density Functional Theory study. Eur J Inorg Chem 2022. [DOI: 10.1002/ejic.202200245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Federica Arrigoni
- Università degli Studi di Milano-Bicocca: Universita degli Studi di Milano-Bicocca Biotecnology and Biosciences ITALY
| | - Chiara Di Carlo
- Università degli Studi di Milano-Bicocca: Universita degli Studi di Milano-Bicocca Biotecnology and Biosciences ITALY
| | - Alberto Rovetta
- University of Milano–Bicocca University Library: Universita degli Studi di Milano-Bicocca Biotecnology and Biosciences ITALY
| | - Luca De Gioia
- University of Milan–Bicocca: Universita degli Studi di Milano-Bicocca Biotecnology and Biosciences ITALY
| | - Giuseppe Zampella
- University of Milan–Bicocca: Universita degli Studi di Milano-Bicocca Biotecnology and Biosciences ITALY
| | - Luca Bertini
- Universita' degli studi di MIlano-Bicocca Biotecnologie e Bioscienze Piazza della Scienza 2 20127 Milano ITALY
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3
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Roy M, Nath AK, Pal I, Dey SG. Second Sphere Interactions in Amyloidogenic Diseases. Chem Rev 2022; 122:12132-12206. [PMID: 35471949 DOI: 10.1021/acs.chemrev.1c00941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Amyloids are protein aggregates bearing a highly ordered cross β structural motif, which may be functional but are mostly pathogenic. Their formation, deposition in tissues and consequent organ dysfunction is the central event in amyloidogenic diseases. Such protein aggregation may be brought about by conformational changes, and much attention has been directed toward factors like metal binding, post-translational modifications, mutations of protein etc., which eventually affect the reactivity and cytotoxicity of the associated proteins. Over the past decade, a global effort from different groups working on these misfolded/unfolded proteins/peptides has revealed that the amino acid residues in the second coordination sphere of the active sites of amyloidogenic proteins/peptides cause changes in H-bonding pattern or protein-protein interactions, which dramatically alter the structure and reactivity of these proteins/peptides. These second sphere effects not only determine the binding of transition metals and cofactors, which define the pathology of some of these diseases, but also change the mechanism of redox reactions catalyzed by these proteins/peptides and form the basis of oxidative damage associated with these amyloidogenic diseases. The present review seeks to discuss such second sphere modifications and their ramifications in the etiopathology of some representative amyloidogenic diseases like Alzheimer's disease (AD), type 2 diabetes mellitus (T2Dm), Parkinson's disease (PD), Huntington's disease (HD), and prion diseases.
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Affiliation(s)
- Madhuparna Roy
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B, Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Arnab Kumar Nath
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B, Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Ishita Pal
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B, Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Somdatta Ghosh Dey
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B, Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, India
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4
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Mitra S, Talukdar K, Prasad P, Misra SK, Khan S, Sharp JS, Jurss JW, Chakraborty S. Rational Design of a Cu Chelator That Mitigates Cu-Induced ROS Production by Amyloid Beta. Chembiochem 2022; 23:e202100485. [PMID: 34878720 PMCID: PMC9040527 DOI: 10.1002/cbic.202100485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Revised: 12/07/2021] [Indexed: 11/07/2022]
Abstract
Alzheimer's disease severely perturbs transition metal homeostasis in the brain leading to the accumulation of excess metals in extracellular and intraneuronal locations. The amyloid beta protein binds these transition metals, ultimately causing severe oxidative stress in the brain. Metal chelation therapy is an approach to sequester metals from amyloid beta and relieve the oxidative stress. Here we have designed a mixed N/O donor Cu chelator inspired by the proposed ligand set of Cu in amyloid beta. We demonstrate that the chelator effectively removes Cu from amyloid beta and suppresses reactive oxygen species (ROS) production by redox silencing and radical scavenging both in vitro and in cellulo. The impact of ROS on the extent of oxidation of the different aggregated forms of the peptide is studied by mass spectrometry, which, along with other ROS assays, shows that the oligomers are pro-oxidants in nature. The aliphatic Leu34, which was previously unobserved, has been identified as a new oxidation site.
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Affiliation(s)
- Suchitra Mitra
- Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677, USA
| | - Kallol Talukdar
- Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677, USA
| | - Pallavi Prasad
- Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677, USA
| | - Sandeep K. Misra
- Department of Biomolecular Sciences, University of Mississippi, University, MS 38677, USA
| | - Shabana Khan
- National Center for Natural Products Research, University of Mississippi, University, MS 38677, USA
| | - Joshua S. Sharp
- Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677, USA
- Department of Biomolecular Sciences, University of Mississippi, University, MS 38677, USA
| | - Jonah W. Jurss
- Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677, USA
| | - Saumen Chakraborty
- Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677, USA
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5
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Gout J, Meuris F, Desbois A, Dorlet P. In vitro coordination of Fe-protoheme with amyloid β is non-specific and exhibits multiple equilibria. J Inorg Biochem 2021; 227:111664. [PMID: 34955310 DOI: 10.1016/j.jinorgbio.2021.111664] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2021] [Revised: 10/20/2021] [Accepted: 11/02/2021] [Indexed: 10/19/2022]
Abstract
In addition to copper and zinc, heme is thought to play a role in Alzheimer's disease and its metabolism is strongly affected during the course of this disease. Amyloid β, the peptide associated with Alzheimer's disease, was shown to bind heme in vitro with potential catalytic activity linked to oxidative stress. To date, there is no direct determination of the structure of this complex. In this work, we studied the binding mode of heme to amyloid β in different conditions of pH and redox state by using isotopically labelled peptide in combination with advanced magnetic and vibrational spectroscopic methods. Our results show that the interaction between heme and amyloid β leads to a variety of species in equilibrium. The formation of these species seems to depend on many factors suggesting that the binding site is neither very strong nor highly specific. In addition, our data do not support the currently accepted model where a water molecule is bound to the ferric heme as sixth ligand. They also exclude structural models mimicking a peroxidatic site in the amyloid β-Fe-protoheme complexes.
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Affiliation(s)
- Jérôme Gout
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), Laboratoire Stress Oxydant et Détoxication, Gif-sur-Yvette, France
| | - Floriane Meuris
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), Laboratoire Stress Oxydant et Détoxication, Gif-sur-Yvette, France
| | - Alain Desbois
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), Laboratoire Stress Oxydant et Détoxication, Gif-sur-Yvette, France.
| | - Pierre Dorlet
- CNRS, Aix-Marseille Université, BIP, IMM, Marseille, France; Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), Laboratoire Stress Oxydant et Détoxication, Gif-sur-Yvette, France.
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6
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Banchelli M, Cascella R, D’Andrea C, La Penna G, Li MS, Machetti F, Matteini P, Pizzanelli S. Probing the Structure of Toxic Amyloid-β Oligomers with Electron Spin Resonance and Molecular Modeling. ACS Chem Neurosci 2021; 12:1150-1161. [PMID: 33724783 PMCID: PMC9284516 DOI: 10.1021/acschemneuro.0c00714] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
Structural models of the toxic species involved in the development of Alzheimer's disease are of utmost importance to understand the molecular mechanism and to describe early biomarkers of the disease. Among toxic species, soluble oligomers of amyloid-β (Aβ) peptides are particularly important, because they are responsible for spreading cell damages over brain regions, thus rapidly impairing brain functions. In this work we obtain structural information on a carefully prepared Aβ(1-42) sample, representing a toxic state for cell cultures, by combining electron spin resonance spectroscopy and computational models. We exploited the binding of Cu2+ to Aβ(1-42) and used copper as a probe for estimating Cu-Cu distances in the oligomers by applying double electron-electron resonance (DEER) pulse sequence. The DEER trace of this sample displays a unique feature that fits well with structural models of oligomers formed by Cu-cross-linked peptide dimers. Because Cu is bound to the Aβ(1-42) N-terminus, for the first time structural constraints that are missing in reported studies are provided at physiological conditions for the Aβ N-termini. These constraints suggest the Aβ(1-42) dimer as the building block of soluble oligomers, thus changing the scenario for any kinetic model of Aβ(1-42) aggregation.
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Affiliation(s)
- Martina Banchelli
- National Research Council of Italy, Institute of Applied Physics “Nello Carrara”, Sesto Fiorentino, I-50019 FI, Italy
| | - Roberta Cascella
- University of Florence, Department of Experimental and Clinical Biomedical Sciences, I-50134 Firenze, Italy
| | - Cristiano D’Andrea
- National Research Council of Italy, Institute of Applied Physics “Nello Carrara”, Sesto Fiorentino, I-50019 FI, Italy
| | - Giovanni La Penna
- National Research Council of Italy (CNR), Institute of Chemistry of Organometallic Compounds (ICCOM), Sesto Fiorentino, I-50019 FI, Italy
- National Institute for Nuclear Physics (INFN),
Section of Roma-Tor Vergata, I-00133 Roma, Italy
| | - Mai Suan Li
- Institute of Physics, Polish Academy of Sciences, Al. Lotnikow 32/46, 02-668 Warsaw, Poland
- Institute for Computational Science and Technology, 6 Quarter, Linh Trung Ward, Thu
Duc District, 700000 Ho Chi Minh City, Vietnam
| | - Fabrizio Machetti
- National Research Council of Italy (CNR), Institute of Chemistry of Organometallic Compounds (ICCOM), Sesto Fiorentino, I-50019 FI, Italy
- University of Florence, Department of Chemistry “Ugo Schiff”, Sesto Fiorentino, I-50019 FI, Italy
| | - Paolo Matteini
- National Research Council of Italy, Institute of Applied Physics “Nello Carrara”, Sesto Fiorentino, I-50019 FI, Italy
| | - Silvia Pizzanelli
- National Research Council of Italy (CNR), Institute of Chemistry of Organometallic Compounds (ICCOM), I-56124 Pisa, Italy
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7
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Urbanc B. Cross-Linked Amyloid β-Protein Oligomers: A Missing Link in Alzheimer's Disease Pathology? J Phys Chem B 2021; 125:1307-1316. [PMID: 33440940 DOI: 10.1021/acs.jpcb.0c07716] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Amyloid β-protein (Aβ) oligomers are broadly viewed as the proximate mediators of toxicity in Alzheimer's disease (AD). Recent studies, however, provide substantial evidence that Aβ is involved in protection and repair of the central nervous system whereby Aβ oligomer and subsequent fibril formation are integral to its normal antimicrobial and antiviral function. These developments raise a question of what exactly makes Aβ oligomers toxic in the context of AD. This Perspective describes a paradigm shift in the search for toxic Aβ oligomer species that involves oxidative-stress-induced stabilization of Aβ oligomers via cross-linking and reviews most recent research elucidating structural aspects of cross-linked Aβ oligomers and potential inhibition of their toxicity.
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Affiliation(s)
- Brigita Urbanc
- Department of Physics, Drexel University, Philadelphia, Pennsylvania 19104, United States
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8
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Bacchella C, Dell'Acqua S, Nicolis S, Monzani E, Casella L. A Cu-bis(imidazole) Substrate Intermediate Is the Catalytically Competent Center for Catechol Oxidase Activity of Copper Amyloid-β. Inorg Chem 2021; 60:606-613. [PMID: 33405903 PMCID: PMC8023651 DOI: 10.1021/acs.inorgchem.0c02243] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
![]()
Interaction
of copper ions with Aβ peptides alters the redox
activity of the metal ion and can be associated with neurodegeneration.
Many studies deal with the characterization of the copper binding
mode responsible for the reactivity. Oxidation experiments of dopamine
and related catechols by copper(II) complexes with the N-terminal
amyloid-β peptides Aβ16 and Aβ9, and the Aβ16[H6A] and Aβ16[H13A]
mutant forms, both in their free amine and N-acetylated forms show
that efficient reactivity requires the oxygenation of a CuI-bis(imidazole) complex with a bound substrate. Therefore, the active
intermediate for catechol oxidation differs from the proposed “in-between
state” for the catalytic oxidation of ascorbate. During the
catechol oxidation process, hydrogen peroxide and superoxide anion
are formed but give only a minor contribution to the reaction. The redox cycling of copper bound to
amyloid-β peptide
requires the generation of a Cu(I)-Aβ-catecholate complex. When
copper(II) is confined in the N-terminal portion, its reduction is
slow and causes a shift toward a bis-His coordination environment.
The addition of catechol to the Cu(I)-bis(imidazole) complex results
in a faster reaction with dioxygen. The reactive species for catechol
oxidation does not correspond to the proposed “in-between state”
for ascorbate oxidation.
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Affiliation(s)
- Chiara Bacchella
- Dipartimento di Chimica, Università di Pavia, Via Taramelli 12, Pavia 27100, Italy
| | - Simone Dell'Acqua
- Dipartimento di Chimica, Università di Pavia, Via Taramelli 12, Pavia 27100, Italy
| | - Stefania Nicolis
- Dipartimento di Chimica, Università di Pavia, Via Taramelli 12, Pavia 27100, Italy
| | - Enrico Monzani
- Dipartimento di Chimica, Università di Pavia, Via Taramelli 12, Pavia 27100, Italy
| | - Luigi Casella
- Dipartimento di Chimica, Università di Pavia, Via Taramelli 12, Pavia 27100, Italy
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9
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Nath AK, Ghatak A, Dey A, Dey SG. Intermediates involved in serotonin oxidation catalyzed by Cu bound Aβ peptides. Chem Sci 2020; 12:1924-1929. [PMID: 34163956 PMCID: PMC8179298 DOI: 10.1039/d0sc06258h] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Abstract
The degradation of neurotransmitters is a hallmark feature of Alzheimer's disease (AD). Copper bound Aβ peptides, invoked to be involved in the pathology of AD, are found to catalyze the oxidation of serotonin (5-HT) by H2O2. A combination of EPR and resonance Raman spectroscopy reveals the formation of a Cu(ii)–OOH species and a dimeric, EPR silent, Cu2O2 bis-μ-oxo species under the reaction conditions. The Cu(ii)–OOH species, which can be selectively formed in the presence of excess H2O2, is the reactive intermediate responsible for 5-HT oxidation. H2O2 produced by the reaction of O2 with reduced Cu(i)–Aβ species can also oxidize 5-HT. Both these pathways are physiologically relevant and may be involved in the observed decay of neurotransmitters as observed in AD patients. The mononuclear copper hydroperoxo species (Cu(ii)–OOH) of Cu–Aβ is the active oxidant responsible for serotonin oxidation by Cu–Aβ in the presence of physiologically relevant oxidants like O2 and H2O2, which can potentially cause oxidative degradation of neurotransmitters, a marker of Alzheimer's disease.![]()
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Affiliation(s)
- Arnab Kumar Nath
- Indian Association for the Cultivation of Science 2A & 2B, Raja S. C. Mullick Road, Jadavpur Kolkata 700032 India
| | - Arnab Ghatak
- Indian Association for the Cultivation of Science 2A & 2B, Raja S. C. Mullick Road, Jadavpur Kolkata 700032 India
| | - Abhishek Dey
- Indian Association for the Cultivation of Science 2A & 2B, Raja S. C. Mullick Road, Jadavpur Kolkata 700032 India
| | - Somdatta Ghosh Dey
- Indian Association for the Cultivation of Science 2A & 2B, Raja S. C. Mullick Road, Jadavpur Kolkata 700032 India
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10
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Active-site environment of Cu bound amyloid β and amylin peptides. J Biol Inorg Chem 2019; 24:1245-1259. [DOI: 10.1007/s00775-019-01724-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Accepted: 09/05/2019] [Indexed: 01/09/2023]
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11
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Stellato F, Chiaraluce R, Consalvi V, De Santis E, La Penna G, Proux O, Rossi G, Morante S. Dealing with Cu reduction in X-ray absorption spectroscopy experiments. Metallomics 2019; 11:1401-1410. [DOI: 10.1039/c9mt00110g] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We prove in the exemplary case of the Cu(ii) amyloid-β peptide complex that, at cryogenic temperatures, the time needed for collecting a good quality spectrum is significantly shorter than the time after which structural damage becomes appreciable.
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Affiliation(s)
| | - Roberta Chiaraluce
- Dipartimento di Scienze Biochimiche “A. Rossi Fanelli” Sapienza Universitá di Roma
- 00185 Roma
- Italy
| | - Valerio Consalvi
- Dipartimento di Scienze Biochimiche “A. Rossi Fanelli” Sapienza Universitá di Roma
- 00185 Roma
- Italy
| | | | - Giovanni La Penna
- INFN
- Sezione di Roma Tor Vergata
- 00133 Roma
- Italy
- CNR – Institute for Chemistry of Organometallic Compounds
| | - Olivier Proux
- Observatoire des Sciences de l'Univers de Grenoble
- 38400 Saint Martin d'Hères (Grenoble)
- France
| | - Giancarlo Rossi
- Dipartimento di Fisica
- Universitá di Roma Tor Vergata
- 00133 Roma
- Italy
- INFN
| | - Silvia Morante
- Dipartimento di Fisica
- Universitá di Roma Tor Vergata
- 00133 Roma
- Italy
- INFN
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12
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Rana M, Sharma AK. Cu and Zn interactions with Aβ peptides: consequence of coordination on aggregation and formation of neurotoxic soluble Aβ oligomers. Metallomics 2019; 11:64-84. [DOI: 10.1039/c8mt00203g] [Citation(s) in RCA: 59] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
The coordination chemistry of transition metal ions (Fe, Cu, Zn) with the amyloid-β (Aβ) peptides has attracted a lot of attention in recent years due to its repercussions in Alzheimer's disease (AD).
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Affiliation(s)
- Monika Rana
- Department of Chemistry
- Central University of Rajasthan
- Ajmer 305817
- India
| | - Anuj Kumar Sharma
- Department of Chemistry
- Central University of Rajasthan
- Ajmer 305817
- India
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13
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Pantelopulos GA, Straub JE, Thirumalai D, Sugita Y. Structure of APP-C99 1-99 and implications for role of extra-membrane domains in function and oligomerization. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2018; 1860:1698-1708. [PMID: 29702072 DOI: 10.1016/j.bbamem.2018.04.002] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2018] [Revised: 04/07/2018] [Accepted: 04/09/2018] [Indexed: 01/30/2023]
Abstract
The 99 amino acid C-terminal fragment of Amyloid Precursor Protein APP-C99 (C99) is cleaved by γ-secretase to form Aβ peptide, which plays a critical role in the etiology of Alzheimer's Disease (AD). The structure of C99 consists of a single transmembrane domain flanked by intra and intercellular domains. While the structure of the transmembrane domain has been well characterized, little is known about the structure of the flanking domains and their role in C99 processing by γ-secretase. To gain insight into the structure of full-length C99, REMD simulations were performed for monomeric C99 in model membranes of varying thickness. We find equilibrium ensembles of C99 from simulation agree with experimentally-inferred residue insertion depths and protein backbone chemical shifts. In thin membranes, the transmembrane domain structure is correlated with extra-membrane structural states and the extra-membrane domain structural states become less correlated to each other. Mean and variance of the transmembrane and G37G38 hinge angles are found to increase with thinning membrane. The N-terminus of C99 forms β-strands that may seed aggregation of Aβ on the membrane surface, promoting amyloid formation. In thicker membranes the N-terminus forms α-helices that interact with the nicastrin domain of γ-secretase. The C-terminus of C99 becomes more α-helical as the membrane thickens, forming structures that may be suitable for binding by cytoplasmic proteins, while C-terminal residues essential to cytotoxic function become α-helical as the membrane thins. The heterogeneous but discrete extra-membrane domain states analyzed here open the path to new investigations of the role of C99 structure and membrane in amyloidogenesis. This article is part of a Special Issue entitled: Protein Aggregation and Misfolding at the Cell Membrane Interface edited by Ayyalusamy Ramamoorthy.
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Affiliation(s)
- George A Pantelopulos
- Department of Chemistry, Boston University, 590 Commonwealth Avenue, Boston, MA 02215-2521, USA
| | - John E Straub
- Department of Chemistry, Boston University, 590 Commonwealth Avenue, Boston, MA 02215-2521, USA.
| | - D Thirumalai
- Department of Chemistry, The University of Texas, Austin, TX 78712-1224, USA
| | - Yuji Sugita
- Theoretical Molecular Science Laboratory, RIKEN, 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan
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14
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Cheignon C, Tomas M, Bonnefont-Rousselot D, Faller P, Hureau C, Collin F. Oxidative stress and the amyloid beta peptide in Alzheimer's disease. Redox Biol 2018; 14:450-464. [PMID: 29080524 PMCID: PMC5680523 DOI: 10.1016/j.redox.2017.10.014] [Citation(s) in RCA: 1297] [Impact Index Per Article: 216.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2017] [Revised: 10/14/2017] [Accepted: 10/17/2017] [Indexed: 01/12/2023] Open
Abstract
Oxidative stress is known to play an important role in the pathogenesis of a number of diseases. In particular, it is linked to the etiology of Alzheimer's disease (AD), an age-related neurodegenerative disease and the most common cause of dementia in the elderly. Histopathological hallmarks of AD are intracellular neurofibrillary tangles and extracellular formation of senile plaques composed of the amyloid-beta peptide (Aβ) in aggregated form along with metal-ions such as copper, iron or zinc. Redox active metal ions, as for example copper, can catalyze the production of Reactive Oxygen Species (ROS) when bound to the amyloid-β (Aβ). The ROS thus produced, in particular the hydroxyl radical which is the most reactive one, may contribute to oxidative damage on both the Aβ peptide itself and on surrounding molecule (proteins, lipids, …). This review highlights the existing link between oxidative stress and AD, and the consequences towards the Aβ peptide and surrounding molecules in terms of oxidative damage. In addition, the implication of metal ions in AD, their interaction with the Aβ peptide and redox properties leading to ROS production are discussed, along with both in vitro and in vivo oxidation of the Aβ peptide, at the molecular level.
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Affiliation(s)
- C Cheignon
- LCC (Laboratoire de Chimie de Coordination), CNRS UPR 8241, 205 route de Narbonne, 31062 Toulouse Cedex 09, France; Université de Toulouse; UPS, INPT, 31077 Toulouse, France
| | - M Tomas
- LCC (Laboratoire de Chimie de Coordination), CNRS UPR 8241, 205 route de Narbonne, 31062 Toulouse Cedex 09, France; Université de Toulouse; UPS, INPT, 31077 Toulouse, France
| | - D Bonnefont-Rousselot
- Department of Metabolic Biochemistry, La Pitié Salpêtrière-Charles Foix University Hospital (AP-HP), Paris, France; Department of Biochemistry, Faculty of Pharmacy, Paris Descartes University, Paris, France; CNRS UMR8258 - INSERM U1022, Faculty of Pharmacy, Paris Descartes University, Paris, France
| | - P Faller
- Biometals and Biology Chemistry, Institut de Chimie (CNRS UMR 7177), University of Strasbourg, 4 rue B. Pascal, 67081 Strasbourg Cedex, France
| | - C Hureau
- LCC (Laboratoire de Chimie de Coordination), CNRS UPR 8241, 205 route de Narbonne, 31062 Toulouse Cedex 09, France; Université de Toulouse; UPS, INPT, 31077 Toulouse, France
| | - F Collin
- LCC (Laboratoire de Chimie de Coordination), CNRS UPR 8241, 205 route de Narbonne, 31062 Toulouse Cedex 09, France; Université de Toulouse; UPS, INPT, 31077 Toulouse, France.
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15
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Branch T, Barahona M, Dodson CA, Ying L. Kinetic Analysis Reveals the Identity of Aβ-Metal Complex Responsible for the Initial Aggregation of Aβ in the Synapse. ACS Chem Neurosci 2017. [PMID: 28621929 PMCID: PMC5609119 DOI: 10.1021/acschemneuro.7b00121] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
![]()
The
mechanism of Aβ aggregation in the absence of metal ions
is well established, yet the role that Zn2+ and Cu2+, the two most studied metal ions, released during neurotransmission,
paly in promoting Aβ aggregation in the vicinity of neuronal
synapses remains elusive. Here we report the kinetics of Zn2+ binding to Aβ and Zn2+/Cu2+ binding
to Aβ-Cu to form ternary complexes under near physiological
conditions (nM Aβ, μM metal ions). We find that these
reactions are several orders of magnitude slower than Cu2+ binding to Aβ. Coupled reaction-diffusion simulations of the
interactions of synaptically released metal ions with Aβ show
that up to a third of Aβ is Cu2+-bound under repetitive
metal ion release, while any other Aβ-metal complexes (including
Aβ-Zn) are insignificant. We therefore conclude that Zn2+ is unlikely to play an important role in the very early
stages (i.e., dimer formation) of Aβ aggregation, contrary to
a widely held view in the subject. We propose that targeting the specific
interactions between Cu2+ and Aβ may be a viable
option in drug development efforts for early stages of AD.
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Affiliation(s)
- Thomas Branch
- Institute of Chemical Biology, ‡Department of Chemistry, §Department of Mathematics, and ∥National Heart
and Lung Institute, Imperial College London, London SW7 2AZ, United Kingdom
| | - Mauricio Barahona
- Institute of Chemical Biology, ‡Department of Chemistry, §Department of Mathematics, and ∥National Heart
and Lung Institute, Imperial College London, London SW7 2AZ, United Kingdom
| | - Charlotte A. Dodson
- Institute of Chemical Biology, ‡Department of Chemistry, §Department of Mathematics, and ∥National Heart
and Lung Institute, Imperial College London, London SW7 2AZ, United Kingdom
| | - Liming Ying
- Institute of Chemical Biology, ‡Department of Chemistry, §Department of Mathematics, and ∥National Heart
and Lung Institute, Imperial College London, London SW7 2AZ, United Kingdom
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16
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Cheignon C, Jones M, Atrián-Blasco E, Kieffer I, Faller P, Collin F, Hureau C. Identification of key structural features of the elusive Cu-Aβ complex that generates ROS in Alzheimer's disease. Chem Sci 2017; 8:5107-5118. [PMID: 28970897 PMCID: PMC5613283 DOI: 10.1039/c7sc00809k] [Citation(s) in RCA: 92] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2017] [Accepted: 04/29/2017] [Indexed: 12/16/2022] Open
Abstract
Oxidative stress is linked to the etiology of Alzheimer's disease (AD), the most common cause of dementia in the elderly. Redox active metal ions such as copper catalyze the production of Reactive Oxygen Species (ROS) when bound to the amyloid-β (Aβ) peptide encountered in AD. We propose that this reaction proceeds through a low-populated Cu-Aβ state, denoted the "catalytic in-between state" (CIBS), which is in equilibrium with the resting state (RS) of both Cu(i)-Aβ and Cu(ii)-Aβ. The nature of this CIBS is investigated in the present work. We report the use of complementary spectroscopic methods (X-ray absorption spectroscopy, EPR and NMR) to characterize the binding of Cu to a wide series of modified peptides in the RS. ROS production by the resulting Cu-peptide complexes was evaluated using fluorescence and UV-vis based methods and led to the identification of the amino acid residues involved in the Cu-Aβ CIBS species. In addition, a possible mechanism by which the ROS are produced is also proposed. These two main results are expected to affect the current vision of the ROS production mechanism by Cu-Aβ but also in other diseases involving amyloidogenic peptides with weakly structured copper binding sites.
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Affiliation(s)
- Clémence Cheignon
- LCC (Laboratoire de Chimie de Coordination) , CNRS UPR 8241 , 205 route de Narbonne , 31062 Toulouse Cedex 09 , France . ;
- Université de Toulouse , UPS , INPT , 31077 Toulouse , France
- UMR 152 Pharma Dev , Université de Toulouse , IRD , UPS , France
| | - Megan Jones
- LCC (Laboratoire de Chimie de Coordination) , CNRS UPR 8241 , 205 route de Narbonne , 31062 Toulouse Cedex 09 , France . ;
- Université de Toulouse , UPS , INPT , 31077 Toulouse , France
| | - Elena Atrián-Blasco
- LCC (Laboratoire de Chimie de Coordination) , CNRS UPR 8241 , 205 route de Narbonne , 31062 Toulouse Cedex 09 , France . ;
- Université de Toulouse , UPS , INPT , 31077 Toulouse , France
| | - Isabelle Kieffer
- Observatoire des Sciences de l'Univers de Grenoble (OSUG) , CNRS UMS 832 , 414 Rue de la Piscine , 38400 Saint Martin d'Hères , France
- BM30B/FAME , ESRF , The European Synchrotron , 71 Avenue des Martyrs , 38000 Grenoble , France
| | - Peter Faller
- LCC (Laboratoire de Chimie de Coordination) , CNRS UPR 8241 , 205 route de Narbonne , 31062 Toulouse Cedex 09 , France . ;
- Université de Toulouse , UPS , INPT , 31077 Toulouse , France
| | - Fabrice Collin
- LCC (Laboratoire de Chimie de Coordination) , CNRS UPR 8241 , 205 route de Narbonne , 31062 Toulouse Cedex 09 , France . ;
- Université de Toulouse , UPS , INPT , 31077 Toulouse , France
- UMR 152 Pharma Dev , Université de Toulouse , IRD , UPS , France
| | - Christelle Hureau
- LCC (Laboratoire de Chimie de Coordination) , CNRS UPR 8241 , 205 route de Narbonne , 31062 Toulouse Cedex 09 , France . ;
- Université de Toulouse , UPS , INPT , 31077 Toulouse , France
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17
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Huy PDQ, Vuong QV, La Penna G, Faller P, Li MS. Impact of Cu(II) Binding on Structures and Dynamics of Aβ 42 Monomer and Dimer: Molecular Dynamics Study. ACS Chem Neurosci 2016; 7:1348-1363. [PMID: 27454036 DOI: 10.1021/acschemneuro.6b00109] [Citation(s) in RCA: 59] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
The classical force field, which is compatible with the Amber force field 99SB, has been obtained for the interaction of Cu(II) with monomer and dimers of amyloid-β peptides using the coordination where Cu(II) is bound to His6, His13 (or His14), and Asp1 with distorted planar geometry. The newly developed force field and molecular dynamics simulation were employed to study the impact of Cu(II) binding on structures and dynamics of Aβ42 monomer and dimers. It was shown that in the presence of Cu(II) the β content of monomer is reduced substantially compared with the wild-type Aβ42 suggesting that, in accord with experiments, metal ions facilitate formation of amorphous aggregates rather than amyloid fibrils with cross-β structures. In addition, one possible mechanism for amorphous assembly is that the Asp23-Lys28 salt bridge, which plays a crucial role in β sheet formation, becomes more flexible upon copper ion binding to the Aβ N-terminus. The simulation of dimers was conducted with the Cu(II)/Aβ stoichiometric ratios of 1:1 and 1:2. For the 1:1 ratio Cu(II) delays the Aβ dimerization process as observed in a number of experiments. The mechanism underlying this phenomenon is associated with slow formation of interchain salt bridges in dimer as well as with decreased hydrophobicity of monomer upon Cu-binding.
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Affiliation(s)
- Pham Dinh Quoc Huy
- Institute
of Physics, Polish Academy of Sciences, Al. Lotnikow 32/46, 02-668 Warsaw, Poland
- Institute
for Computational Science and Technology, Quang Trung Software City, Tan Chanh Hiep Ward, District 12, Ho Chi
Minh City, Vietnam
| | - Quan Van Vuong
- Institute
for Computational Science and Technology, Quang Trung Software City, Tan Chanh Hiep Ward, District 12, Ho Chi
Minh City, Vietnam
- Department
of Chemistry, Nagoya University, Nagoya 464-8602, Japan
| | - Giovanni La Penna
- National Research Council of Italy CNR, Institute
for Chemistry of Organometallic Compounds ICCOM, 50019 Florence, Italy
- Italian Institute for Nuclear Physics INFN, Section
of Roma-Tor Vergata, 50019 Florence, Italy
| | - Peter Faller
- Biometals
and Biological Chemistry, Institute of Chemistry, University of Strasbourg, 4 rue B. Pascal, 67081 Strasbourg, France
| | - Mai Suan Li
- Institute
of Physics, Polish Academy of Sciences, Al. Lotnikow 32/46, 02-668 Warsaw, Poland
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La Penna G, Minicozzi V, Morante S, Rossi GC, Stellato F. A first-principle calculation of the XANES spectrum of Cu2+ in water. J Chem Phys 2015; 143:124508. [DOI: 10.1063/1.4931808] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Affiliation(s)
- G. La Penna
- CNR–Institute for Chemistry of Organometallic Compounds, Sesto Fiorentino 50019, Italy
| | - V. Minicozzi
- INFN, Rome “Tor Vergata,” Rome 00133, Italy
- Department of Physics, University of Rome “Tor Vergata,” Rome 00133, Italy
| | - S. Morante
- INFN, Rome “Tor Vergata,” Rome 00133, Italy
- Department of Physics, University of Rome “Tor Vergata,” Rome 00133, Italy
| | - G. C. Rossi
- INFN, Rome “Tor Vergata,” Rome 00133, Italy
- Department of Physics, University of Rome “Tor Vergata,” Rome 00133, Italy
- Centro Studi e Ricerche “Enrico Fermi,” Roma 00184, Italy
| | - F. Stellato
- INFN, Rome “Tor Vergata,” Rome 00133, Italy
- Department of Physics, University of Rome “Tor Vergata,” Rome 00133, Italy
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19
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20
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Li W, Wang J, Zhang J, Wang W. Molecular simulations of metal-coupled protein folding. Curr Opin Struct Biol 2015; 30:25-31. [DOI: 10.1016/j.sbi.2014.11.006] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2014] [Revised: 11/24/2014] [Accepted: 11/24/2014] [Indexed: 01/22/2023]
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21
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Trujano-Ortiz LG, González FJ, Quintanar L. Redox Cycling of Copper–Amyloid β 1–16 Peptide Complexes Is Highly Dependent on the Coordination Mode. Inorg Chem 2014; 54:4-6. [DOI: 10.1021/ic501941a] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Lidia G. Trujano-Ortiz
- Departamento de Química, Centro de Investigación y de Estudios Avanzados (Cinvestav), Avenida Instituto Politecnico Nacional
2508, San Pedro Zacatenco, 07360 Ciudad de México, D.F., Mexico
| | - Felipe J. González
- Departamento de Química, Centro de Investigación y de Estudios Avanzados (Cinvestav), Avenida Instituto Politecnico Nacional
2508, San Pedro Zacatenco, 07360 Ciudad de México, D.F., Mexico
| | - Liliana Quintanar
- Departamento de Química, Centro de Investigación y de Estudios Avanzados (Cinvestav), Avenida Instituto Politecnico Nacional
2508, San Pedro Zacatenco, 07360 Ciudad de México, D.F., Mexico
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22
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Faller P, Hureau C, La Penna G. Metal ions and intrinsically disordered proteins and peptides: from Cu/Zn amyloid-β to general principles. Acc Chem Res 2014; 47:2252-9. [PMID: 24871565 DOI: 10.1021/ar400293h] [Citation(s) in RCA: 190] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The interaction of d-block metal ions (Cu, Zn, Fe, etc.) with intrinsically disordered proteins (IDPs) has gained interest, partly due to their proposed roles in several diseases, mainly neurodegenerative. A prominent member of IDPs is the peptide amyloid-β (Aβ) that aggregates into metal-enriched amyloid plaques, a hallmark of Alzheimer's disease, in which Cu and Zn are bound to Aβ. IDPs are a class of proteins and peptides that lack a unique 3D structure when the protein is isolated. This disordered structure impacts their interaction with metal ions compared with structured metalloproteins. Metalloproteins either have a preorganized metal binding site or fold upon metal binding, resulting in defined 3D structure with a well-defined metal site. In contrast, for Aβ and likely most of the other IDPs, the affinity for Cu(I/II) and Zn(II) is weaker and the interaction is flexible with different coordination sites present. Coordination of Cu(I/II) with Aβ is very dynamic including fast Cu-exchange reactions (milliseconds or less) that are intrapeptidic between different sites as well as interpeptidic. This highly dynamic metal-IDP interaction has a strong impact on reactivity and potential biological role: (i) Due to the low affinity compared with classical metalloproteins, IDPs likely bind metals only at special places or under special conditions. For Aβ, this is likely in the neurons that expel Zn or Cu into the synapse and upon metal dysregulation occurring in Alzheimer's disease. (ii) Amino acid substitutions (mutations) on noncoordinating residues can change drastically the coordination sphere. (iii) Considering the Cu/Zn-Aβ aberrant interaction, therapeutic strategies can be based on removal of Cu/Zn or precluding their binding to the peptide. The latter is very difficult due to the multitude of metal-binding sites, but the fast koff facilitates removal. (iv) The high flexibility of the Cu-Aβ complex results in different conformations with different redox activity. Only some conformations are able to produce reactive oxygen species. (v) Other, more specific catalysis (like enzymes) is very unlikely for Cu/Zn-Aβ. (vi) The Cu/Zn exchange reactions with Aβ are faster than the aggregation process and can hence have a strong impact on this process. In conclusion, the coordination chemistry is fundamentally different for most of IDPs compared with the classical, structured metalloproteins or with (bio)-inorganic complexes. The dynamics is a key parameter to understand this interaction and its potential biological impact.
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Affiliation(s)
- Peter Faller
- CNRS, LCC (Laboratoire de Chimie de Coordination), 205 route de Narbonne, BP 44099, Toulouse F-31077 Cedex 4, France
- Université de Toulouse, UPS, INPT, Toulouse F-31077 Cedex 4, France
| | - Christelle Hureau
- CNRS, LCC (Laboratoire de Chimie de Coordination), 205 route de Narbonne, BP 44099, Toulouse F-31077 Cedex 4, France
- Université de Toulouse, UPS, INPT, Toulouse F-31077 Cedex 4, France
| | - Giovanni La Penna
- CNR - National Research Council of Italy, ICCOM
- Institute for chemistry of organo-metallic compounds, via Madonna del Piano 10, I-50019 Sesto Fiorentino, Firenze, Italy
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23
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Gomez-Castro CZ, Vela A, Quintanar L, Grande-Aztatzi R, Mineva T, Goursot A. Insights into the oxygen-based ligand of the low pH component of the Cu(2+)-amyloid-β complex. J Phys Chem B 2014; 118:10052-64. [PMID: 25090035 DOI: 10.1021/jp5047529] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In spite of significant experimental effort dedicated to the study of Cu(2+) binding to the amyloid beta (Aβ) peptide, involved in Alzheimer's disease, the nature of the oxygen-based ligand in the low pH component of the Cu(2+)-Aβ(1-16) complex is still under debate. This study reports density-functional-theory-based calculations that explore the potential energy surface of Cu(2+) complexes including N and O ligands at the N-terminus of the Aβ peptide, with a focus on evaluating the role of Asp1 carboxylate in copper coordination. Model conformers including 3, 6, and 17 amino acids have been used to systematically study several aspects of the Cu(2+)-coordination such as the Asp1 side chain conformation, local peptide backbone geometry, electrostatic and/or hydrogen bond interactions, and number and availability of Cu(2+) ligands. Our results show that the Asp1 peptide carbonyl binds to Cu(2+) only if the coordination number is less than four. In contrast, if four ligands are available, the most stable structures include the Asp1 carboxylate in equatorial position instead of the Asp1 carbonyl group. The two lowest energy Cu(2+)-Aβ(1-17) models involve Asp1 COO(-), the N-terminus, and His6 and His14 as equatorial ligands, with either a carbonyl or a water molecule in the axial position. These models are in good agreement with experimental data reported for component I of the Cu(2+)-Aβ(1-16) complex, including EXAFS- and X-ray-derived Cu(2+)-ligand distances, Cu(2+) EPR parameters, and (14)N and (13)C superhyperfine couplings. Our results suggest that at low pH, Cu(2+)-Aβ species with Asp1 carboxylate equatorial coordination coexist with species coordinating the Asp1 carbonyl. Understanding the bonding mechanism in these species is relevant to gain a deeper insight on the molecular processes involving copper-amyloid-β complexes, such as aggregation and redox activity.
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Affiliation(s)
- Carlos Z Gomez-Castro
- Departamento de Química, Cinvestav , Avenida Instituto Politécnico Nacional 2508, México D.F. 07360, México
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24
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Alí-Torres J, Mirats A, Maréchal JD, Rodríguez-Santiago L, Sodupe M. 3D structures and redox potentials of Cu2+-Aβ(1-16) complexes at different pH: a computational study. J Phys Chem B 2014; 118:4840-50. [PMID: 24738872 DOI: 10.1021/jp5019718] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Oxidative stress induced by redox-active metal cations such as Cu(2+) is a key event in the development of Alzheimer's disease. A detailed knowledge of the structure of Cu(2+)-Aβ complex is thus important to get a better understanding of this critical process. In the present study, we use a computational approach that combines homology modeling with quantum-mechanics-based methods to determine plausible 3D structures of Cu(2+)-Aβ(1-16) complexes that enclose the different metal coordination spheres proposed experimentally at different pH values. With these models in hand, we determine their standard reduction potential (SRP) with the aim of getting new insights into the relation between the structure of these complexes and their redox behavior. Results show that in all cases copper reduction induces CObackbone decoordination, which, for distorted square planar structures in the oxidized state (Ia_δδ, IIa_εδε, IIa_εεε, and IIc_ε), leads to tricoordinated species. For the pentacoordinated structural candidate Ib_δε with Glu11 at the apical position, the reduction leads to a distorted tetrahedral structure. The present results highlight the importance of the nature of the ligands on the SRP. The computed values (with respect to the standard hydrogen electrode) for complexes enclosing negatively charged ligands in the coordination sphere (from -0.81 to -0.12 V) are significantly lower than those computed for models involving neutral ligands (from 0.19 to 0.28 V). Major geometry changes induced by reduction, on both the metal site and the peptide configuration, are discussed as well as their possible influence in the formation of reactive oxygen species.
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Affiliation(s)
- Jorge Alí-Torres
- Departament de Química, Universitat Autònoma de Barcelona , 08193 Bellaterra, Barcelona, Spain
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25
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Leong SL, Young TR, Barnham KJ, Wedd AG, Hinds MG, Xiao Z, Cappai R. Quantification of copper binding to amyloid precursor protein domain 2 and its Caenorhabditis elegans ortholog. Implications for biological function. Metallomics 2014; 6:105-16. [DOI: 10.1039/c3mt00258f] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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26
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La Penna G, Hureau C, Andreussi O, Faller P. Identifying, by first-principles simulations, Cu[amyloid-β] species making Fenton-type reactions in Alzheimer's disease. J Phys Chem B 2013; 117:16455-67. [PMID: 24313818 DOI: 10.1021/jp410046w] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
According to the amyloid cascade hypothesis, amyloid-β peptides (Aβ) play a causative role in Alzheimer's disease (AD), of which oligomeric forms are proposed to be the most neurotoxic by provoking oxidative stress. Copper ions seem to play an important role as they are bound to Aβ in amyloid plaques, a hallmark of AD. Moreover, Cu-Aβ complexes are able to catalyze the production of hydrogen peroxide and hydroxyl radicals, and oligomeric Cu-Aβ was reported to be more reactive. The flexibility of the unstructured Aβ peptide leads to the formation of a multitude of different forms of both Cu(I) and Cu(II) complexes. This raised the question of the structure-function relationship. We address this question for the biologically relevant Fenton-type reaction. Computational models for the Cu-Aβ complex in monomeric and dimeric forms were built, and their redox behavior was analyzed together with their reactivity with peroxide. A set of 16 configurations of Cu-Aβ was studied and the configurations were classified into 3 groups: (A) configurations that evolve into a linearly bound and nonreactive Cu(I) coordination; (B) reactive configurations without large reorganization between the two Cu redox states; and (C) reactive configurations with an open structure in the Cu(I)-Aβ coordination, which have high water accessibility to Cu. All the structures that showed high reactivity with H2O2 (to form HO(•)) fall into class C. This means that within all the possible configurations, only some pools are able to produce efficiently the deleterious HO(•), while the other pools are more inert. The characteristics of highly reactive configurations consist of a N-Cu(I)-N coordination with an angle far from 180° and high water crowding at the open side. This allows the side-on entrance of H2O2 and its cleavage to form a hydroxyl radical. Interestingly, the reactive Cu(I)-Aβ states originated mostly from the dimeric starting models, in agreement with the higher reactivity of oligomers. Our study gives a rationale for the Fenton-type reactivity of Cu-Aβ and how dimeric Cu-Aβ could lead to a higher reactivity. This opens a new therapeutic angle of attack against Cu-Aβ-based reactive oxygen species production.
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Affiliation(s)
- Giovanni La Penna
- CNR - National Research Council of Italy , ICCOM - Institute for Chemistry of Organo-Metallic Compounds, via Madonna del Piano 10, I-50019 Sesto Fiorentino, Firenze, Italy
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27
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Martic S, Rains MK, Kraatz HB. Probing copper/tau protein interactions electrochemically. Anal Biochem 2013; 442:130-7. [DOI: 10.1016/j.ab.2013.07.015] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2013] [Revised: 07/05/2013] [Accepted: 07/09/2013] [Indexed: 01/08/2023]
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28
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Cassagnes LE, Hervé V, Nepveu F, Hureau C, Faller P, Collin F. The Catalytically Active Copper-Amyloid-Beta State: Coordination Site Responsible for Reactive Oxygen Species Production. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201305372] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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29
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Cassagnes LE, Hervé V, Nepveu F, Hureau C, Faller P, Collin F. The catalytically active copper-amyloid-Beta state: coordination site responsible for reactive oxygen species production. Angew Chem Int Ed Engl 2013; 52:11110-3. [PMID: 24038998 DOI: 10.1002/anie.201305372] [Citation(s) in RCA: 89] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2013] [Indexed: 12/22/2022]
Abstract
Copper-amyloid-β ROS production: Copper ions (red sphere, see picture) have been found to accumulate in amyloid-β plaques and play a role in the generation of reactive oxygen species (ROS) within this context. Mass spectrometry studies were able to detail the sites of oxidation damage and shed new light on the mechanism of ROS production, important for the understanding of the pathogenicity of amyloid-β peptides.
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Affiliation(s)
- Laure-Estelle Cassagnes
- Université de Toulouse; UPS; UMR 152 PHARMA-DEV, Université Toulouse 3, 31062 Toulouse Cedex 09 (France); Institut de Recherche pour le développement (IRD); UMR 152 PHARMA-DEV, 31062 Toulouse Cedex 09 (France)
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30
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Wärmländer S, Tiiman A, Abelein A, Luo J, Jarvet J, Söderberg KL, Danielsson J, Gräslund A. Biophysical studies of the amyloid β-peptide: interactions with metal ions and small molecules. Chembiochem 2013; 14:1692-704. [PMID: 23983094 DOI: 10.1002/cbic.201300262] [Citation(s) in RCA: 78] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2013] [Indexed: 11/11/2022]
Abstract
Alzheimer's disease is the most common of the protein misfolding ("amyloid") diseases. The deposits in the brains of afflicted patients contain as a major fraction an aggregated insoluble form of the so-called amyloid β-peptides (Aβ peptides): fragments of the amyloid precursor protein of 39-43 residues in length. This review focuses on biophysical studies of the Aβ peptides: that is, of the aggregation pathways and intermediates observed during aggregation, of the molecular structures observed along these pathways, and of the interactions of Aβ with Cu and Zn ions and with small molecules that modify the aggregation pathways. Particular emphasis is placed on studies based on high-resolution and solid-state NMR methods. Theoretical studies relating to the interactions are also included. An emerging picture is that of Aβ peptides in aqueous solution undergoing hydrophobic collapse together with identical partners. There then follows a relatively slow process leading to more ordered secondary and tertiary (quaternary) structures in the growing aggregates. These aggregates eventually assemble into elongated fibrils visible by electron microscopy. Small molecules or metal ions that interfere with the aggregation processes give rise to a variety of aggregation products that may be studied in vitro and considered in relation to observations in cell cultures or in vivo. Although the heterogeneous nature of the processes makes detailed structural studies difficult, knowledge and understanding of the underlying physical chemistry might provide a basis for future therapeutic strategies against the disease. A final part of the review deals with the interactions that may occur between the Aβ peptides and the prion protein, where the latter is involved in other protein misfolding diseases.
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Affiliation(s)
- Sebastian Wärmländer
- Department of Biochemistry and Biophysics, The Arrhenius Laboratories, Stockholm University, 106 91 Stockholm (Sweden)
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31
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Hernández-Rodríguez M, Correa-Basurto J, Benitez-Cardoza CG, Resendiz-Albor AA, Rosales-Hernández MC. In silico and in vitro studies to elucidate the role of Cu2+ and galanthamine as the limiting step in the amyloid beta (1-42) fibrillation process. Protein Sci 2013; 22:1320-35. [PMID: 23904252 DOI: 10.1002/pro.2319] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2013] [Revised: 07/03/2013] [Accepted: 07/12/2013] [Indexed: 11/06/2022]
Abstract
The formation of fibrils and oligomers of amyloid beta (Aβ) with 42 amino acid residues (Aβ 1-42 ) is the most important pathophysiological event associated with Alzheimer's disease (AD). The formation of Aβ fibrils and oligomers requires a conformational change from an α-helix to a β-sheet conformation, which is encouraged by the formation of a salt bridge between Asp 23 or Glu 22 and Lys 28. Recently, Cu(2+) and various drugs used for AD treatment, such as galanthamine (Reminyl(®) ), have been reported to inhibit the formation of Aβ fibrils. However, the mechanism of this inhibition remains unclear. Therefore, the aim of this work was to explore how Cu(2+) and galanthamine prevent the formation of Aβ1-42 fibrils using molecular dynamics (MD) simulations (20 ns) and in vitro studies using fluorescence and circular dichroism (CD) spectroscopies. The MD simulations revealed that Aβ1-42 acquires a characteristic U-shape before the α-helix to β-sheet conformational change. The formation of a salt bridge between Asp 23 and Lys 28 was also observed beginning at 5 ns. However, the MD simulations of Aβ 1-42 in the presence of Cu(2+) or galanthamine demonstrated that both ligands prevent the formation of the salt bridge by either binding to Glu 22 and Asp 23 (Cu(2+) ) or to Lys 28 (galanthamine), which prevents Aβ 1-42 from adopting the U-characteristic conformation that allows the amino acids to transition to a β-sheet conformation. The docking results revealed that the conformation obtained by the MD simulation of a monomer from the 1Z0Q structure can form similar interactions to those obtained from the 2BGE structure in the oligomers. The in vitro studies demonstrated that Aβ remains in an unfolded conformation when Cu(2+) and galanthamine are used. Then, ligands that bind Asp 23 or Glu 22 and Lys 28 could therefore be used to prevent β turn formation and, consequently, the formation of Aβ fibrils.
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Affiliation(s)
- Maricarmen Hernández-Rodríguez
- Laboratorio de Modelado Molecular y Bioinformatica, Escuela Superior de Medicina, Instituto Politécnico Nacional, Plan de San Luis y Díaz Mirón s/n, 11340 México City, D.F., México; Laboratorio de Biofísica y Biocatálisis, Escuela Superior de Medicina, Instituto Politécnico Nacional, Plan de San Luis y Díaz Mirón s/n, 11340 México City, D.F., México
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Ghosh C, Dey SG. Ligand-Field and Ligand-Binding Analysis of the Active Site of Copper-Bound Aβ Associated with Alzheimer’s Disease. Inorg Chem 2013; 52:1318-27. [DOI: 10.1021/ic301865n] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Chandradeep Ghosh
- Department of Inorganic Chemistry, Indian Association for the Cultivation of Science, Jadavpur, Kolkata, India 700032
| | - Somdatta Ghosh Dey
- Department of Inorganic Chemistry, Indian Association for the Cultivation of Science, Jadavpur, Kolkata, India 700032
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