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Huang Y, Dai C, Zhu J. Adaptive σ-Aromaticity in an Unsaturated Three-Membered Ring. Chem Asian J 2020; 15:3444-3450. [PMID: 32856746 DOI: 10.1002/asia.202000900] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2020] [Revised: 08/27/2020] [Indexed: 01/02/2023]
Abstract
Based on Hückel's and Baird's rules, species are aromatic either in the lowest singlet state (S0 ) or the lowest triplet state (T1 ) only. Thus, species with adaptive aromaticity (with aromaticity in both the S0 and T1 states) is particularly rare. On the other hand, σ-aromaticity in the T1 state has been underdeveloped, let alone adaptive σ-aromaticity. Herein, via various aromaticity indices including NICS, ACID and EDDB, we demonstrate adaptive σ-aromaticity in an unsaturated three-membered ring, which is a traditional area dominated by π-aromaticity. The origin of adaptive σ-aromaticity could be attributed to the excitation mode of the T1 state formed from out-of-plane π molecular orbital to the π* orbitals. Thus the σ-aromaticity of the three-membered ring in the S0 state could hold in the T1 state. Our findings extend the concept of adaptive σ-aromaticity into three-membered rings and could be useful to further develop the concept of both σ-aromaticity and adaptive aromaticity.
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Affiliation(s)
- Yuanyuan Huang
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Chenshu Dai
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Jun Zhu
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
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2
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Islas R, Oyarzún DP, Cantero-López P. Analysis of the aromaticity in extended systems formed from isoelectronic Al42− and C42+ aromatic clusters. Struct Chem 2018. [DOI: 10.1007/s11224-018-1120-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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3
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Zhou X, Wu J, Hao Y, Zhu C, Zhuo Q, Xia H, Zhu J. Rational Design and Synthesis of Unsaturated Se-Containing Osmacycles with σ-Aromaticity. Chemistry 2017; 24:2389-2395. [DOI: 10.1002/chem.201703870] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2017] [Indexed: 11/06/2022]
Affiliation(s)
- Xiaoxi Zhou
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Collaborative Innovation Center of Chemistry for Energy Materials ( i ChEM), and Department of Chemistry, College of Chemistry, and Chemical Engineering; Xiamen University; Xiamen 361005 P.R. China
| | - Jingjing Wu
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Collaborative Innovation Center of Chemistry for Energy Materials ( i ChEM), and Department of Chemistry, College of Chemistry, and Chemical Engineering; Xiamen University; Xiamen 361005 P.R. China
- Fujian Provincial Key Laboratory of Theoretical, and Computational Chemistry; Xiamen University; Xiamen 361005 P.R. China
| | - Yulei Hao
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Collaborative Innovation Center of Chemistry for Energy Materials ( i ChEM), and Department of Chemistry, College of Chemistry, and Chemical Engineering; Xiamen University; Xiamen 361005 P.R. China
- Fujian Provincial Key Laboratory of Theoretical, and Computational Chemistry; Xiamen University; Xiamen 361005 P.R. China
| | - Congqing Zhu
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Collaborative Innovation Center of Chemistry for Energy Materials ( i ChEM), and Department of Chemistry, College of Chemistry, and Chemical Engineering; Xiamen University; Xiamen 361005 P.R. China
| | - Qingde Zhuo
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Collaborative Innovation Center of Chemistry for Energy Materials ( i ChEM), and Department of Chemistry, College of Chemistry, and Chemical Engineering; Xiamen University; Xiamen 361005 P.R. China
| | - Haiping Xia
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Collaborative Innovation Center of Chemistry for Energy Materials ( i ChEM), and Department of Chemistry, College of Chemistry, and Chemical Engineering; Xiamen University; Xiamen 361005 P.R. China
| | - Jun Zhu
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Collaborative Innovation Center of Chemistry for Energy Materials ( i ChEM), and Department of Chemistry, College of Chemistry, and Chemical Engineering; Xiamen University; Xiamen 361005 P.R. China
- Fujian Provincial Key Laboratory of Theoretical, and Computational Chemistry; Xiamen University; Xiamen 361005 P.R. China
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4
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Li Y, Oliveira V, Tang C, Cremer D, Liu C, Ma J. The Peculiar Role of the Au 3 Unit in Au m Clusters: σ-Aromaticity of the Au 5Zn + Ion. Inorg Chem 2017; 56:5793-5803. [PMID: 28448130 DOI: 10.1021/acs.inorgchem.7b00404] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The stability of small Aum (m = 4-7) clusters is investigated by analyzing their energetic, geometric, vibrational, magnetic, and electron density properties. Gold clusters can be constructed from stable cyclic 3-center-2-electron (3c-2e) Au3+ units (3-rings) with σ-aromaticity. The stabilization requires a flow of negative charge from internal 3-rings with electron-deficient bonding to peripheral 3-ring units with stronger Au-Au bonds. The valence-isoelectronic clusters Au6 and Au5Zn+ have similar electronic properties: Au5Zn+ is a strongly σ-aromatic molecule. An understanding of the structure of Aum clusters is obtained by deriving a Clar's Rule equivalent for polycyclic gold clusters: The structure with the larger number of rings with dominant 3c-2e character and a smaller degree of 3c-3e character occupies the global minimum of the Aum potential energy surface.
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Affiliation(s)
- Yanle Li
- Key Laboratory of Mesoscopic Chemistry of MOE, School of Chemistry and Chemical Engineering, Nanjing University , 22 Hankou Road, Nanjing, Jiangsu Province 210093, People's Republic of China
| | - Vytor Oliveira
- Computational and Theoretical Chemistry Group, Department of Chemistry, Southern Methodist University , 3215 Daniel Avenue, Dallas, Texas 75275-0314, United States
| | - Chunmei Tang
- Key Laboratory of Mesoscopic Chemistry of MOE, School of Chemistry and Chemical Engineering, Nanjing University , 22 Hankou Road, Nanjing, Jiangsu Province 210093, People's Republic of China
| | - Dieter Cremer
- Computational and Theoretical Chemistry Group, Department of Chemistry, Southern Methodist University , 3215 Daniel Avenue, Dallas, Texas 75275-0314, United States
| | - Chunyan Liu
- Key Laboratory of Mesoscopic Chemistry of MOE, School of Chemistry and Chemical Engineering, Nanjing University , 22 Hankou Road, Nanjing, Jiangsu Province 210093, People's Republic of China
| | - Jing Ma
- Key Laboratory of Mesoscopic Chemistry of MOE, School of Chemistry and Chemical Engineering, Nanjing University , 22 Hankou Road, Nanjing, Jiangsu Province 210093, People's Republic of China
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5
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Barman N, Banerjee S, Brandão P, Bauzá A, Frontera A, Saha A. Anion-dependent structural diversity of cadmium(II) complexes: synthesis, crystal structures, luminescence properties, and unusual C-H/σ supramolecular interactions involving σ-aromatic M2X2 cores. J COORD CHEM 2016. [DOI: 10.1080/00958972.2016.1173205] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Nikita Barman
- Department of Chemistry, Jadavpur University, Kolkata, India
| | - Saikat Banerjee
- Department of Chemistry, Jadavpur University, Kolkata, India
| | - Paula Brandão
- TEMA−NRD, Mechanical Engineering Department, University of Aveiro, Aveiro, Portugal
| | - Antonio Bauzá
- Departament de Química, Universitat de les IllesBalears, Palma (Baleares), Spain
| | - Antonio Frontera
- Departament de Química, Universitat de les IllesBalears, Palma (Baleares), Spain
| | - Amrita Saha
- Department of Chemistry, Jadavpur University, Kolkata, India
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El Bakouri O, Duran M, Poater J, Feixas F, Solà M. Octahedral aromaticity in 2S+1A1g X6q clusters (X = Li–C and Be–Si, S = 0–3, and q = −2 to +4). Phys Chem Chem Phys 2016; 18:11700-6. [DOI: 10.1039/c5cp07011b] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
Octahedral aromaticity was found in most clusters of formula X6q (X = Li–C and Be–Si) with q = −2 to +4 and spin states ranging from the singlet to the septet that have electronic configurations of closed-shells or open shells half-filled with the same spin electrons.
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Affiliation(s)
- Ouissam El Bakouri
- Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química
- Universitat de Girona
- 17071 Girona
- Spain
| | - Miquel Duran
- Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química
- Universitat de Girona
- 17071 Girona
- Spain
| | - Jordi Poater
- Department of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling
- Vrije Universiteit Amsterdam
- NL-1081HV Amsterdam
- The Netherlands
- Institució Catalana de Recerca i Estudis Avançats (ICREA) and Departament de Química Orgànica
| | - Ferran Feixas
- Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química
- Universitat de Girona
- 17071 Girona
- Spain
| | - Miquel Solà
- Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química
- Universitat de Girona
- 17071 Girona
- Spain
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El Bakouri O, Solà M, Poater J. Planar vs. three-dimensional X62−, X2Y42−, and X3Y32− (X, Y = B, Al, Ga) metal clusters: an analysis of their relative energies through the turn-upside-down approach. Phys Chem Chem Phys 2016; 18:21102-10. [DOI: 10.1039/c6cp01109h] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Despite the fact that B and Al belong to the same group 13 elements, the B62− cluster prefers the planar D2h geometry, whereas Al62− favours the Oh structure, which is caused by orbital interactions.
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Affiliation(s)
- Ouissam El Bakouri
- Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química
- Universitat de Girona
- 17071 Girona
- Spain
| | - Miquel Solà
- Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química
- Universitat de Girona
- 17071 Girona
- Spain
| | - Jordi Poater
- Departament de Química Inorgànica i Orgànica & Institut de Química Teòrica i Computacional (IQTCUB)
- Universitat de Barcelona
- 08028 Barcelona
- Spain
- Department of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling
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8
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Hao Y, Wu J, Zhu J. σ Aromaticity Dominates in the Unsaturated Three-Membered Ring of Cyclopropametallapentalenes from Groups 7-9: A DFT Study. Chemistry 2015; 21:18805-10. [PMID: 26559932 DOI: 10.1002/chem.201502390] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2015] [Indexed: 11/11/2022]
Abstract
Aromaticity, an old but still fantastic topic, has long attracted considerable interest of chemists. Generally, π aromaticity is described by π-electron delocalization in closed circuits of unsaturated compounds whereas σ-electron delocalization in saturated rings leads to σ aromaticity. Interestingly, our recent study shows that σ aromaticity can be dominating in an unsaturated three-membered ring (3MR) of cyclopropaosmapentalene. An interesting question is raised: Can the σ aromaticity, which is dominant in the unsaturated 3MR, be extended to other cyclopropametallapentalenes? If so, how could the metal centers, ligands, and substituents affect the σ aromaticity? Here, we report a thorough theoretical study on these issues. The nucleus-independent chemical shift calculations and the anisotropy of the current-induced density plots reveal the dominant σ aromaticity in these unsaturated 3MRs. In addition, our calculations show that substituents on the 3MRs have significant effects on the σ aromaticity, whereas the ligand effect is particularly small.
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Affiliation(s)
- Yulei Hao
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry and Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005 (P. R. China) http://junzhu.chem8.org
| | - Jingjing Wu
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry and Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005 (P. R. China) http://junzhu.chem8.org
| | - Jun Zhu
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry and Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005 (P. R. China) http://junzhu.chem8.org.
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9
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Díaz-Cervantes E, Islas-Jácome A, Rentería-Gómez A, Robles J, Gámez-Montaño R. In vitro and in silico evaluation of twelve newly-synthesized 1-acetamide-5-methoxy-2-oxindoles as 5-Ht₇ receptor ligands. Bioorg Med Chem Lett 2015; 25:1580-5. [PMID: 25724826 DOI: 10.1016/j.bmcl.2015.02.008] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2014] [Revised: 02/04/2015] [Accepted: 02/05/2015] [Indexed: 11/28/2022]
Abstract
Based on in vitro studies of twelve newly-synthesized 1-acetamide-5-methoxy-2-oxindoles as 5-Ht7 receptor ligands, Structure Affinity Relationship (SAR) and Quantitative Structure Affinity Relationship model (QSAR) are provided. Also, a ligand-based pharmacophore model is proposed through molecular docking techniques and Nucleus Independent Chemical Shift DFT calculations (NICS).
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Affiliation(s)
- Erik Díaz-Cervantes
- Departamento de Farmacia, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N, Col. Noria Alta, Guanajuato C.P. 36050, Guanajuato, Mexico; Departamento de Química, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N, Col. Noria Alta, Guanajuato C.P. 36050, Guanajuato, Mexico
| | - Alejandro Islas-Jácome
- Departamento de Química, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N, Col. Noria Alta, Guanajuato C.P. 36050, Guanajuato, Mexico
| | - Angel Rentería-Gómez
- Departamento de Química, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N, Col. Noria Alta, Guanajuato C.P. 36050, Guanajuato, Mexico
| | - Juvencio Robles
- Departamento de Farmacia, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N, Col. Noria Alta, Guanajuato C.P. 36050, Guanajuato, Mexico.
| | - Rocío Gámez-Montaño
- Departamento de Química, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta S/N, Col. Noria Alta, Guanajuato C.P. 36050, Guanajuato, Mexico.
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10
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Hatanaka M, Saito M, Fujita M, Morokuma K. σ-Aromaticity in Hexa-Group 16 Atom-Substituted Benzene Dications: A Theoretical Study. J Org Chem 2014; 79:2640-6. [DOI: 10.1021/jo500098h] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Miho Hatanaka
- Fukui
Institute for Fundamental Chemistry, Kyoto University, Kyoto 606-8103, Japan
| | - Masaichi Saito
- Department
of Chemistry, Graduate School of Science and Engineering, Saitama University, Saitama 338-8570, Japan
| | - Masahiro Fujita
- Department
of Chemistry, Graduate School of Science and Engineering, Saitama University, Saitama 338-8570, Japan
| | - Keiji Morokuma
- Fukui
Institute for Fundamental Chemistry, Kyoto University, Kyoto 606-8103, Japan
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