1
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Hou S, Yu Q, Cheng X, Hu M, Li Z, Luo J. Emission of Protonated Riboflavin Induced by Inhibition of Out-of-plane Vibration in a Rigid Polymer Network. J Phys Chem B 2025; 129:1707-1713. [PMID: 39840898 DOI: 10.1021/acs.jpcb.4c08370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2025]
Abstract
Chromophores incorporated into rigid polymer matrices may exhibit novel photophysical properties distinct from those in liquid solutions. In this work, we explored the decay path of the second ππ* state (2ππ*) of riboflavin in poly(vinyl alcohol) (PVA) solutions and films with various acidities. Highly efficient internal conversion from 2ππ* to the lowest ππ* state (1ππ*) induced by slight in-plane motion is demonstrated in all PVA solutions and films, irrespective of environmental acidity and rigidification. Ground-state protonation of riboflavin occurs in the highly acidic PVA film, and this cationic species emits fluorescence around 460 nm, in contrast to the ultrafast nonradiative relaxation in aqueous solution. The emission is demonstrated to originate from the 2ππ* state rather than the 1ππ* state. The 2ππ*-1ππ* internal conversion of protonated riboflavin is demonstrated to be induced by out-of-plane motion and impeded in a rigid PVA network, resulting in the anti-Kasha fluorescence.
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Affiliation(s)
- Siyu Hou
- School of Physics and Optoelectronic Engineering, Yangtze University, Jingzhou 434023, China
| | - Qin Yu
- School of Physics and Optoelectronic Engineering, Yangtze University, Jingzhou 434023, China
| | - Xiaolan Cheng
- School of Physics and Optoelectronic Engineering, Yangtze University, Jingzhou 434023, China
| | - Mengrong Hu
- School of Physics and Optoelectronic Engineering, Yangtze University, Jingzhou 434023, China
| | - Zheng Li
- School of Physics and Optoelectronic Engineering, Yangtze University, Jingzhou 434023, China
| | - Jian Luo
- School of Physics and Optoelectronic Engineering, Yangtze University, Jingzhou 434023, China
- Laboratory of Solid State Microstructures, Nanjing University, Nanjing 210093, China
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2
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Granados-Tavera K, Cárdenas-Jirón G. Electronic, optical and charge transport properties of Zn-porphyrin-C 60 MOFs: a combined periodic and cluster modeling. Dalton Trans 2024; 53:16830-16842. [PMID: 39189898 DOI: 10.1039/d4dt01459f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/28/2024]
Abstract
Density functional theory (DFT) calculations were performed on the 5,15 meso-positions of nine porphyrin-containing MOFs; Zn2(TCPB)-(NMe2-ZnP); (H4TCPB = 1,2,4,5-tetrakis(4-carboxyphenyl)benzene), (NMe2-ZnP = [5,15-bis[(4-pyridyl)-ethynyl]-10,20-bis-(dimethylamine) porphinato]zinc(II)) functionalized with nitrogen-, oxygen-, and sulfur-containing groups to study their effects on the electronic, optical and transport properties of the materials. The properties of these materials have also been investigated by encapsulating fullerene (C60) in their pores (C60@MOFs). The results indicate that the guest C60 in the MOF generates high photoconductivity through efficient porphyrin/fullerene donor-acceptor (D-A) interactions, which are facilitated by oxygen and sulfur functionalities. DFT calculations show that C60 interacts favorably in MOFs due to negative Eint values. Encapsulated C60 molecules modify the electronic band structure, affecting the conduction band and unoccupied states of MOFs corresponding to C60 p orbitals. TD-DFT calculations show that incorporating C60 promotes D-A interactions in MOFs, leading to charge transfer in the near-infrared and visible photoinduced electron transfer (PET) from porphyrins to C60. Nonequilibrium Green's function-based calculations for MOFs with sulfur group, with and without C60, performed using molecular junctions with Au(111)-based electrodes show increased charge transport for the doped MOF. These insights into tuning electronic/optical properties and controlling charge transfer can aid in the design of new visible/near-infrared MOF-based optoelectronic devices.
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Affiliation(s)
- Kevin Granados-Tavera
- Laboratory of Theoretical Chemistry, Faculty of Chemistry and Biology, University of Santiago de Chile (USACH), Santiago, Chile.
- Facultad de Ciencias Básicas, Universidad de la Amazonia, Florencia, Colombia
| | - Gloria Cárdenas-Jirón
- Laboratory of Theoretical Chemistry, Faculty of Chemistry and Biology, University of Santiago de Chile (USACH), Santiago, Chile.
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3
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Xu Y, Peschel MT, Jänchen M, Foja R, Storch G, Thyrhaug E, de Vivie-Riedle R, Hauer J. Determining Excited-State Absorption Properties of a Quinoid Flavin by Polarization-Resolved Transient Spectroscopy. J Phys Chem A 2024; 128:3830-3839. [PMID: 38709806 PMCID: PMC11103687 DOI: 10.1021/acs.jpca.4c01260] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Revised: 04/19/2024] [Accepted: 04/25/2024] [Indexed: 05/08/2024]
Abstract
As important naturally occurring chromophores, photophysical/chemical properties of quinoid flavins have been extensively studied both experimentally and theoretically. However, little is known about the transition dipole moment (TDM) orientation of excited-state absorption transitions of these important compounds. This aspect is of high interest in the fields of photocatalysis and quantum control studies. In this work, we employ polarization-associated spectra (PAS) to study the excited-state absorption transitions and the underlying TDM directions of a standard quinoid flavin compound. As compared to transient absorption anisotropy (TAA), an analysis based on PAS not only avoids diverging signals but also retrieves the relative angle for ESA transitions with respect to known TDM directions. Quantum chemical calculations of excited-state properties lead to good agreement with TA signals measured in magic angle configuration. Only when comparing experiment and theory for TAA spectra and PAS, do we find deviations when and only when the S0 → S1 of flavin is used as a reference. We attribute this to the vibronic coupling of this transition to a dark state. This effect is only observed in the employed polarization-controlled spectroscopy and would have gone unnoticed in conventional TA.
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Affiliation(s)
- Yi Xu
- TUM
School of Natural Sciences, Department of Chemistry and Catalysis
Research Center, Technical University of
Munich, Lichtenbergstraße 4, 85748 Garching, Germany
| | - Martin T. Peschel
- Department
of Chemistry, Ludwig-Maximilians-Universität
München, 81377 München, Germany
| | - Miriam Jänchen
- TUM
School of Natural Sciences, Department of Chemistry and Catalysis
Research Center, Technical University of
Munich, Lichtenbergstraße 4, 85748 Garching, Germany
| | - Richard Foja
- TUM
School of Natural Sciences, Department of Chemistry and Catalysis
Research Center, Technical University of
Munich, Lichtenbergstraße 4, 85748 Garching, Germany
| | - Golo Storch
- TUM
School of Natural Sciences, Department of Chemistry and Catalysis
Research Center, Technical University of
Munich, Lichtenbergstraße 4, 85748 Garching, Germany
| | - Erling Thyrhaug
- TUM
School of Natural Sciences, Department of Chemistry and Catalysis
Research Center, Technical University of
Munich, Lichtenbergstraße 4, 85748 Garching, Germany
| | | | - Jürgen Hauer
- TUM
School of Natural Sciences, Department of Chemistry and Catalysis
Research Center, Technical University of
Munich, Lichtenbergstraße 4, 85748 Garching, Germany
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4
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Panter S, Ayekoi A, Tesche J, Chen J, Illarionov B, Bacher A, Fischer M, Weber S. Shining a Spotlight on Methyl Groups: Photochemically Induced Dynamic Nuclear Polarization Spectroscopy of 5-Deazariboflavin and Its Nor Analogs. Int J Mol Sci 2024; 25:848. [PMID: 38255921 PMCID: PMC10815406 DOI: 10.3390/ijms25020848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Revised: 01/07/2024] [Accepted: 01/08/2024] [Indexed: 01/24/2024] Open
Abstract
5-Deazaflavins are analogs of naturally occurring flavin cofactors. They serve as substitutes for natural flavin cofactors to investigate and modify the reaction pathways of flavoproteins. Demethylated 5-deazaflavins are potential candidates for artificial cofactors, allowing us to fine-tune the reaction kinetics and absorption characteristics of flavoproteins. In this contribution, demethylated 5-deazariboflavin radicals are investigated (1) to assess the influence of the methyl groups on the electronic structure of the 5-deazaflavin radical and (2) to explore their photophysical properties with regard to their potential as artificial cofactors. We determined the proton hyperfine structure of demethylated 5-deazariboflavins using photochemically induced dynamic nuclear polarization (photo-CIDNP) spectroscopy, as well as density functional theory (DFT). To provide context, we compare our findings to a study of flavin mononucleotide (FMN) derivatives. We found a significant influence of the methylation pattern on the absorption properties, as well as on the proton hyperfine coupling ratios of the xylene moiety, which appears to be solvent-dependent. This effect is enhanced by the replacement of N5 by C5-H in 5-deazaflavin derivatives compared to their respective flavin counterparts.
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Affiliation(s)
- Sabrina Panter
- Institut für Physikalische Chemie, Albert-Ludwigs-Universität Freiburg, Albertstr. 21, 79104 Freiburg, Germany; (S.P.); (A.A.)
| | - Audrey Ayekoi
- Institut für Physikalische Chemie, Albert-Ludwigs-Universität Freiburg, Albertstr. 21, 79104 Freiburg, Germany; (S.P.); (A.A.)
| | - Jannis Tesche
- Institut für Physikalische Chemie, Albert-Ludwigs-Universität Freiburg, Albertstr. 21, 79104 Freiburg, Germany; (S.P.); (A.A.)
| | - Jing Chen
- Institut für Physikalische Chemie, Albert-Ludwigs-Universität Freiburg, Albertstr. 21, 79104 Freiburg, Germany; (S.P.); (A.A.)
| | - Boris Illarionov
- Institut für Lebensmittelchemie, Universität Hamburg, Grindelallee 117, 20146 Hamburg, Germany; (B.I.); (M.F.)
| | - Adelbert Bacher
- TUM School of Natural Sciences, Technische Universität München, Lichtenbergstr. 4, 85747 Garching, Germany;
| | - Markus Fischer
- Institut für Lebensmittelchemie, Universität Hamburg, Grindelallee 117, 20146 Hamburg, Germany; (B.I.); (M.F.)
| | - Stefan Weber
- Institut für Physikalische Chemie, Albert-Ludwigs-Universität Freiburg, Albertstr. 21, 79104 Freiburg, Germany; (S.P.); (A.A.)
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5
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Vinod Mouli MSS, Kumar Mishra A. Divergent Crystallographic Architecture for Silver‐Flavin Complexes Induced via pH Variation. ChemistrySelect 2022. [DOI: 10.1002/slct.202202126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- M. S. S. Vinod Mouli
- Department of Chemistry Indian Institute of Technology Hyderabad Kandi Sangareddy 502285 Telangana
| | - Ashutosh Kumar Mishra
- Department of Chemistry Indian Institute of Technology Hyderabad Kandi Sangareddy 502285 Telangana
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6
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Mouli MSSV, Mishra AK. Synthesis, characterization and photophysical studies of the flavopeptide conjugates as model for the covalently linked flavoenzymes. J CHEM SCI 2022. [DOI: 10.1007/s12039-022-02050-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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7
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Comparing ultrafast excited state quenching of flavin 1,N 6-ethenoadenine dinucleotide and flavin adenine dinucleotide by optical spectroscopy and DFT calculations. Photochem Photobiol Sci 2022; 21:959-982. [PMID: 35218554 DOI: 10.1007/s43630-022-00187-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Accepted: 02/01/2022] [Indexed: 10/19/2022]
Abstract
Flavins are photoenzymatic cofactors often exploiting the absorption of light to energize photoinduced redox chemistry in a variety of contexts. Both flavin adenine dinucleotide (FAD) and flavin mononucleotide (FMN) are used for this function. The study of these photoenzymes has been facilitated using flavin analogs. Most of these analogs involve modification of the flavin ring, and there is recent evidence that adenine (Ade)-modified FAD can affect enzyme turnover, but so far this has only been shown for enzymes where the adenine and flavin rings are close to each other in a stacked conformation. FAD is also stacked in aqueous solution, and its photodynamics are quite different from unstacked FAD or FMN. Oxidized photoexcited FAD decays rapidly, presumably through PET with Ade as donor and Fl* as acceptor. Definitive identification of the spectral signatures of Ade∙+ and Fl∙- radicals is elusive. Here we use the FAD analog Flavin 1,N6-Ethenoadenine Dinucleotide (εFAD) to study how different photochemical outcomes depend on the identity of the Ade moiety in stacked FAD and its analog εFAD. We have used UV-Vis transient absorption spectroscopy complemented by TD-DFT calculations to investigate the excited state evolution of the flavins. In FAD*, no radicals were observed, suggesting that FAD* does not undergo PET. εFAD* kinetics showed a broad absorption band that suggests a charge transfer state exists upon photoexcitation with evidence for radical pair formation. Surprisingly, significant triplet flavin was produced from εFAD* We hypothesize that the dipolar (ε)Ade moieties differentially modulate the singlet-triplet energy gap, resulting in different intersystem crossing rates. The additional electron density on the etheno group of εFAD supplies better orbital overlap with the flavin S1 state, accelerating charge transfer in that molecule.
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8
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Mouli MSSV, Mishra AK. Modulating catalytic activity of a modified flavin analogue via judicially positioned metal ion toward aerobic sulphoxidation. RSC Adv 2022; 12:3990-3995. [PMID: 35425444 PMCID: PMC8981109 DOI: 10.1039/d1ra06558k] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Accepted: 11/15/2021] [Indexed: 01/24/2023] Open
Abstract
This manuscript describes the synthesis, spectroscopic and crystallographic characterization of a cadmium complex of 10-propoylisoalloxazine-7-carboxylic acid (Flc-Cd). Catalytic activity of Flc-Cd towards aerobic sulphoxidation reaction was investigated in the presence of l-ascorbic acid as the reducing agent. Notably the neutral un-metalated flavin analogue did not show any significant catalytic activity. The design strategy for Flc provides a close proximity of the metal centre to the flavin core without compromising the catalytic site thereby assisting the product formation when compared to unmetallated Flc. Minor enantioselectivity is also observed in cases where unsymmetrical sulphides were used; indicative of the possible involvement of chiral l-ascorbic acid in the intermediate formation. Design and synthesis of a catalytically efficient metal-flavin complex toward aerobic sulphoxidation was achieved via judicially positioning the metal ion near the catalytic site thereby assisting the intermediate formation.![]()
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Affiliation(s)
- M. S. S. Vinod Mouli
- Department of Chemistry, Indian Institute of Technology-Hyderabad, Kandi-502284, India
| | - Ashutosh Kumar Mishra
- Department of Chemistry, Indian Institute of Technology-Hyderabad, Kandi-502284, India
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9
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Müller D, Dopfer O. Interaction of Alkali Ions with Flavins: Infrared and Optical Spectra of Metal–Riboflavin Complexes. J Phys Chem A 2021; 125:3146-3158. [DOI: 10.1021/acs.jpca.1c01846] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- David Müller
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, D-10623 Berlin, Germany
| | - Otto Dopfer
- Institut für Optik und Atomare Physik, Technische Universität Berlin, Hardenbergstr. 36, D-10623 Berlin, Germany
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10
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Astanov SK, Kasimova GK, Kurtaliev EN, Nizomov NN, Jumabaev A. Electronic nature and structure of aggregates of riboflavin molecules. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 248:119177. [PMID: 33257239 DOI: 10.1016/j.saa.2020.119177] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2020] [Revised: 10/25/2020] [Accepted: 10/31/2020] [Indexed: 06/12/2023]
Abstract
Aggregation process of riboflavin molecules in binary mixtures: water - dioxane, water - DMSO, and ethanol - isobutanol, were investigated using spectroscopic methods and quantum-chemical calculation. It was shown that at a constant concentration of riboflavin and different ratios of binary mixtures, a deformation of the electronic absorption spectra with a hypochromic effect is observed. The observed changes are caused by the formation of a hydrogen bond and dipole-dipole interaction between riboflavin molecules, which is accompanied by a shift and resonance splitting of excited electronic levels.
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Affiliation(s)
- Salikh Kh Astanov
- Bukhara Engineering and Technological Institute, Murtazaeva str., 15, 200117 Bukhara, Uzbekistan.
| | - Guzal K Kasimova
- Bukhara Engineering and Technological Institute, Murtazaeva str., 15, 200117 Bukhara, Uzbekistan
| | - Eldar N Kurtaliev
- Samarkand State University, University Blvd., 15, 140104 Samarkand, Uzbekistan.
| | - Negmat N Nizomov
- Samarkand State University, University Blvd., 15, 140104 Samarkand, Uzbekistan
| | - Abduvakhid Jumabaev
- Samarkand State University, University Blvd., 15, 140104 Samarkand, Uzbekistan
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11
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Schwinn K, Ferré N, Huix-Rotllant M. UV-visible absorption spectrum of FAD and its reduced forms embedded in a cryptochrome protein. Phys Chem Chem Phys 2020; 22:12447-12455. [PMID: 32458897 DOI: 10.1039/d0cp01714k] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Cryptochromes are a class of flavoproteins proposed as candidates to explain magnetoreception of animals, plants and bacteria. The main hypothesis is that a biradical is formed upon blue-light absorption by flavin adenine dinucleotide (FAD). In a protein milieu, the oxidized form of FAD can be reduced, leading to four redox derivative forms: anionic and neutral semi-reduced radicals, and anionic and neutral fully reduced forms. All these forms have a characteristic electronic absorption spectrum, with a strong vibrational resolution. Here, we carried out a normal mode analysis at the electrostatic embedding QM/MM level of theory to compute the vibrationally resolved absorption spectra of the five redox forms of FAD embedded in a plant cryptochrome. We show that explicitly accounting for vibrational broadening contributions to electronic transitions is essential to reproduce the experimental spectra. In the case of the neutral radical form of FAD, the absorption spectrum is reproduced only if the presence of a tryptophan radical is considered.
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12
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Andrikopoulos PC, Liu Y, Picchiotti A, Lenngren N, Kloz M, Chaudhari AS, Precek M, Rebarz M, Andreasson J, Hajdu J, Schneider B, Fuertes G. Femtosecond-to-nanosecond dynamics of flavin mononucleotide monitored by stimulated Raman spectroscopy and simulations. Phys Chem Chem Phys 2020; 22:6538-6552. [PMID: 31994556 DOI: 10.1039/c9cp04918e] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Flavin mononucleotide (FMN) belongs to the large family of flavins, ubiquitous yellow-coloured biological chromophores that contain an isoalloxazine ring system. As a cofactor in flavoproteins, it is found in various enzymes and photosensory receptors, like those featuring the light-oxygen-voltage (LOV) domain. The photocycle of FMN is triggered by blue light and proceeds via a cascade of intermediate states. In this work, we have studied isolated FMN in an aqueous solution in order to elucidate the intrinsic electronic and vibrational changes of the chromophore upon excitation. The ultrafast transitions of excited FMN were monitored through the joint use of femtosecond stimulated Raman spectroscopy (FSRS) and transient absorption spectroscopy encompassing a time window between 0 ps and 6 ns with 50 fs time resolution. Global analysis of the obtained transient visible absorption and transient Raman spectra in combination with extensive quantum chemistry calculations identified unambiguously the singlet and triplet FMN populations and addressed solvent dynamics effects. The good agreement between the experimental and theoretical spectra facilitated the assignment of electronic transitions and vibrations. Our results represent the first steps towards more complex experiments aimed at tracking structural changes of FMN embedded in light-inducible proteins upon photoexcitation.
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Affiliation(s)
- Prokopis C Andrikopoulos
- Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Průmyslová 595, CZ-252 50 Vestec, Czech Republic.
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13
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Mondal P, Schwinn K, Huix-Rotllant M. Impact of the redox state of flavin chromophores on the UV–vis spectra, redox and acidity constants and electron affinities. J Photochem Photobiol A Chem 2020. [DOI: 10.1016/j.jphotochem.2019.112164] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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14
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Brisker-Klaiman D, Dreuw A. On the influence of dimerisation of lumiflavin in aqueous solution on its optical spectra – a quantum chemical study. Mol Phys 2019. [DOI: 10.1080/00268976.2019.1616843] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Daria Brisker-Klaiman
- Interdisciplinary Center for Scientific Computing, Heidelberg University, Heidelberg, Germany
| | - Andreas Dreuw
- Interdisciplinary Center for Scientific Computing, Heidelberg University, Heidelberg, Germany
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15
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Kutta RJ, Archipowa N, Scrutton NS. The sacrificial inactivation of the blue-light photosensor cryptochrome from Drosophila melanogaster. Phys Chem Chem Phys 2018; 20:28767-28776. [PMID: 30417904 PMCID: PMC6250122 DOI: 10.1039/c8cp04671a] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2018] [Accepted: 09/25/2018] [Indexed: 01/10/2023]
Abstract
Drosophila melanogaster cryptochrome functions as the primary blue-light receptor that mediates circadian photo entrainment. Absorption of a photon leads to reduction of the protein-bound FAD via consecutive electron transfer along a conserved tryptophan tetrad resembling the signalling state required for conformational changes and induction of subsequent signalling cascades. However, how the initial photochemistry and subsequent dark processes leading to downstream signalling are linked to each other at the molecular level is still poorly understood. Here, we investigated in detail the initial photochemical events in DmCRY by time-resolved and stationary absorption spectroscopy combined with quantum chemical and molecular dynamics calculations. We resolved the early events along the conserved tryptophan tetrad and the final deprotonation of the terminal tryptophanyl radical cation. These initial events lead to conformational changes, such as the known C-terminal tail release, Trp decomposition, and finally FAD release providing evidence that DmCRY does not undergo a photocycle. We propose that light is a negative regulator of DmCRY stability even under in vitro conditions where the proteasomal machinery is missing, that is in line with its biological function, i.e. entrainment of the circadian clock.
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Affiliation(s)
- Roger Jan Kutta
- Manchester Institute of Biotechnology (MIB) and School of Chemistry
, The University of Manchester
,
131 Princess Street
, Manchester
, M1 7DN
, UK
.
| | - Nataliya Archipowa
- Manchester Institute of Biotechnology (MIB) and School of Chemistry
, The University of Manchester
,
131 Princess Street
, Manchester
, M1 7DN
, UK
.
| | - Nigel Shaun Scrutton
- Manchester Institute of Biotechnology (MIB) and School of Chemistry
, The University of Manchester
,
131 Princess Street
, Manchester
, M1 7DN
, UK
.
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16
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Jung W, Kong BJ, Hong S, Kim T, Oh K. Enhancement of the lasing efficiency of vitamin B 2 in a highly polar organic solvent via DNA-lipid complex. OPTICS LETTERS 2018; 43:4021-4024. [PMID: 30106942 DOI: 10.1364/ol.43.004021] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2018] [Accepted: 07/19/2018] [Indexed: 06/08/2023]
Abstract
We experimentally demonstrated a green liquid laser at the wavelength of 570 nm, utilizing the optical gain of vitamin B2 in a highly polar organic solvent, and proposed an efficient method to enhance its lasing efficiency by adding DNA-lipid complex (DNA-CTMA) in the solution. Optical properties of vitamin B2 in the hexafluoro-2-propanol solvents were investigated by adding various amounts of DNA-CTMA in terms of the UV-visible absorbance, the visible emission, and the fluorescence lifetime. A Fabry-Perot cavity was built to obtain the laser oscillation at 570 nm using a pulsed pump source at the wavelength of 450 nm, 5 ns pulse duration, and 10 Hz repetition rate. By adding DNA-CTMA, both the output power and slope efficiency were enhanced along with a significant reduction of the lasing threshold pump power. The proposed scheme could open new potential for highly efficient biolasers.
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17
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Giacomozzi L, Kjær C, Langeland Knudsen J, Andersen LH, Brøndsted Nielsen S, Stockett MH. Absorption and luminescence spectroscopy of mass-selected flavin adenine dinucleotide mono-anions. J Chem Phys 2018; 148:214309. [PMID: 29884035 DOI: 10.1063/1.5024028] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
We report the absorption profile of isolated Flavin Adenine Dinucleotide (FAD) mono-anions recorded using photo-induced dissociation action spectroscopy. In this charge state, one of the phosphoric acid groups is deprotonated and the chromophore itself is in its neutral oxidized state. These measurements cover the first four optical transitions of FAD with excitation energies from 2.3 to 6.0 eV (210-550 nm). The S0 → S2 transition is strongly blue shifted relative to aqueous solution, supporting the view that this transition has a significant charge-transfer character. The remaining bands are close to their solution-phase positions. This confirms that the large discrepancy between quantum chemical calculations of vertical transition energies and solution-phase band maxima cannot be explained by solvent effects. We also report the luminescence spectrum of FAD mono-anions in vacuo. The gas-phase Stokes shift for S1 is 3000 cm-1, which is considerably larger than any previously reported for other molecular ions and consistent with a significant displacement of the ground and excited state potential energy surfaces. Consideration of the vibronic structure is thus essential for simulating the absorption and luminescence spectra of flavins.
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Affiliation(s)
- L Giacomozzi
- Department of Physics, Stockholm University, Stockholm, Sweden
| | - C Kjær
- Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark
| | | | - L H Andersen
- Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark
| | | | - M H Stockett
- Department of Physics, Stockholm University, Stockholm, Sweden
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18
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Daidone I, Amadei A, Aschi M, Zanetti-Polzi L. On the nature of solvatochromic effect: The riboflavin absorption spectrum as a case study. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 192:451-457. [PMID: 29212059 DOI: 10.1016/j.saa.2017.11.031] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2017] [Revised: 10/27/2017] [Accepted: 11/14/2017] [Indexed: 06/07/2023]
Abstract
We present here the calculation of the absorption spectrum of riboflavin in acetonitrile and dimethyl sulfoxide using a hybrid quantum/classical approach, namely the perturbed matrix method, based on quantum mechanical calculations and molecular dynamics simulations. The calculated spectra are compared to the absorption spectrum of riboflavin previously calculated in water and to the experimental spectra obtained in all three solvents. The experimentally observed variations in the absorption spectra upon change of the solvent environment are well reproduced by the calculated spectra. In addition, the nature of the excited states of riboflavin interacting with different solvents is investigated, showing that environment effects determine a recombination of the gas-phase electronic states and that such a recombination is strongly affected by the polarity of the solvent inducing significant changes in the absorption spectra.
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Affiliation(s)
- Isabella Daidone
- Department of Physical and Chemical Sciences, University of L'Aquila, via Vetoio (Coppito 1), L'Aquila 67010, Italy
| | - Andrea Amadei
- Department of Chemical and Technological Sciences, University of Rome "Tor Vergata", Via della Ricerca Scientifica, 00185 Rome, Italy
| | - Massimiliano Aschi
- Department of Physical and Chemical Sciences, University of L'Aquila, via Vetoio (Coppito 1), L'Aquila 67010, Italy
| | - Laura Zanetti-Polzi
- Department of Physical and Chemical Sciences, University of L'Aquila, via Vetoio (Coppito 1), L'Aquila 67010, Italy.
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19
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Yamazaki S, Diaz MA, Carlino TM, Gotluru C, Mazza MMA, Scott AM. Ultrafast Spectroscopic Dynamics of Quinacrine-Riboflavin Binding Protein Interactions. J Phys Chem B 2017; 121:8291-8299. [PMID: 28762739 DOI: 10.1021/acs.jpcb.7b05304] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Redox active cofactors play a dynamic role inside protein binding active sites because the amino acids responsible for binding participate in electron transfer (ET) reactions. Here, we use femtosecond transient absorption (FsTA) spectroscopy to examine the ultrafast ET between quinacrine (Qc), an antimalarial drug with potential anticancer activity, and riboflavin binding protein (RfBP) with a known Kd = 264 nM. Steady-state absorption reveals a ∼ 10 nm red-shift in the ground state when QcH32+ is titrated with RfBP, and a Stern-Volmer analysis shows ∼84% quenching and a blue-shift of the QcH32+ photoluminescence to form a 1:1 binding ratio of the QcH32+-RfBP complex. Upon selective photoexcitation of QcH32+ in the QcH32+-RfBP complex, we observe charge separation in 7 ps to form 1[QcH3_red•+-RfBP•+], which persists for 138 ps. The FsTA spectra show the spectroscopic identification of QcH3_red•+, determined from spectroelectrochemical measurements in DMSO. We correlate our results to literature and report lifetimes that are 10-20× slower than the natural riboflavin, Rf-RfBP, complex and are oxygen independent. Driving force (ΔG) calculations, corrected for estimated dielectric constants for protein hydrophobic pockets, and Marcus theory depict a favorable one-electron ET process between QcH32+ and nearby redox active tyrosine (Tyr) or tryptophan (Trp) residues.
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Affiliation(s)
- Shiori Yamazaki
- University of Miami , Department of Chemistry, 1301 Memorial Drive, Coral Gables, Florida 33146, United States
| | - Matthew A Diaz
- University of Miami , Department of Chemistry, 1301 Memorial Drive, Coral Gables, Florida 33146, United States
| | - Thomas M Carlino
- University of Miami , Department of Chemistry, 1301 Memorial Drive, Coral Gables, Florida 33146, United States
| | - Chitra Gotluru
- University of Miami , Department of Chemistry, 1301 Memorial Drive, Coral Gables, Florida 33146, United States
| | - Mercedes M A Mazza
- University of Miami , Department of Chemistry, 1301 Memorial Drive, Coral Gables, Florida 33146, United States
| | - Amy M Scott
- University of Miami , Department of Chemistry, 1301 Memorial Drive, Coral Gables, Florida 33146, United States
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20
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Govind C, Karunakaran V. Ultrafast Relaxation Dynamics of Photoexcited Heme Model Compounds: Observation of Multiple Electronic Spin States and Vibrational Cooling. J Phys Chem B 2017; 121:3111-3120. [DOI: 10.1021/acs.jpcb.7b01416] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Chinju Govind
- Photosciences
and Photonics Section, Chemical Sciences and Technology Division, CSIR-National Institute for Interdisciplinary Science and Technology, Thiruvananthapuram 695 019, Kerala India
- Academy of Scientific and Innovative Research (AcSIR), New Delhi 110 001, India
| | - Venugopal Karunakaran
- Photosciences
and Photonics Section, Chemical Sciences and Technology Division, CSIR-National Institute for Interdisciplinary Science and Technology, Thiruvananthapuram 695 019, Kerala India
- Academy of Scientific and Innovative Research (AcSIR), New Delhi 110 001, India
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21
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22
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El Khoury Y, Van Wilderen LJGW, Bredenbeck J. Ultrafast 2D-IR spectroelectrochemistry of flavin mononucleotide. J Chem Phys 2016; 142:212416. [PMID: 26049436 DOI: 10.1063/1.4916916] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We demonstrate the coupling of ultrafast two-dimensional infrared (2D-IR) spectroscopy to electrochemistry in solution and apply it to flavin mononucleotide, an important cofactor of redox proteins. For this purpose, we designed a spectroelectrochemical cell optimized for 2D-IR measurements in reflection and measured the time-dependent 2D-IR spectra of the oxidized and reduced forms of flavin mononucleotide. The data show anharmonic coupling and vibrational energy transfer between different vibrational modes in the two redox species. Such information is inaccessible with redox-controlled steady-state FTIR spectroscopy. The wide range of applications offered by 2D-IR spectroscopy, such as sub-picosecond structure determination, IR band assignment via energy transfer, disentangling reaction mixtures through band connectivity in the 2D spectra, and the measurement of solvation dynamics and chemical exchange can now be explored under controlled redox potential. The development of this technique furthermore opens new horizons for studying the dynamics of redox proteins.
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Affiliation(s)
- Youssef El Khoury
- Institut für Biophysik, Johann Wolfgang Goethe-Universität, Max-von-Laue-Strasse 1, 60438 Frankfurt am Main, Germany
| | - Luuk J G W Van Wilderen
- Institut für Biophysik, Johann Wolfgang Goethe-Universität, Max-von-Laue-Strasse 1, 60438 Frankfurt am Main, Germany
| | - Jens Bredenbeck
- Institut für Biophysik, Johann Wolfgang Goethe-Universität, Max-von-Laue-Strasse 1, 60438 Frankfurt am Main, Germany
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23
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Heydari A, Doostan F, Khoshnood H, Sheibani H. Water-soluble cationic poly(β-cyclodextrin-co-guanidine) as a controlled vitamin B2delivery carrier. RSC Adv 2016. [DOI: 10.1039/c6ra01011c] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
Vitamin B2(VB2) is effectively incorporated into novel water-soluble cationic β-cyclodextrin (β-CD) polymers in order to improve its physiochemical properties.
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Affiliation(s)
- Abolfazl Heydari
- Department of Chemistry
- Shahid Bahonar University of Kerman
- Kerman
- Iran
- Young Researchers Society
| | - Farideh Doostan
- Physiology Research Center and Department of Nutrition
- Kerman University of Medical Sciences
- Kerman
- Iran
| | - Hamideh Khoshnood
- Department of Chemistry
- Shahid Bahonar University of Kerman
- Kerman
- Iran
| | - Hassan Sheibani
- Department of Chemistry
- Shahid Bahonar University of Kerman
- Kerman
- Iran
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24
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Sengupta C, Sarangi MK, Sau A, Mandal D, Basu S. A case study of photo induced electron transfer between riboflavin and aliphatic amine: Deciphering different mechanisms of ET operating from femtosecond to microsecond time domain. J Photochem Photobiol A Chem 2015. [DOI: 10.1016/j.jphotochem.2014.09.010] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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25
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Quick M, Weigel A, Ernsting NP. Fluorescence following Excited-State Protonation of Riboflavin at N(5). J Phys Chem B 2013; 117:5441-7. [DOI: 10.1021/jp312571d] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Martin Quick
- Department
of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Str. 2, D-12489 Berlin, Germany
| | - Alexander Weigel
- Department
of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Str. 2, D-12489 Berlin, Germany
| | - Nikolaus P. Ernsting
- Department
of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Str. 2, D-12489 Berlin, Germany
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26
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Immeln D, Weigel A, Kottke T, Pérez Lustres JL. Primary Events in the Blue Light Sensor Plant Cryptochrome: Intraprotein Electron and Proton Transfer Revealed by Femtosecond Spectroscopy. J Am Chem Soc 2012; 134:12536-46. [DOI: 10.1021/ja302121z] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Dominik Immeln
- Physical and
Biophysical Chemistry,
Department of Chemistry, Bielefeld University, Universitätsstrasse 25, 33615 Bielefeld, Germany
| | - Alexander Weigel
- Institut für Chemie, Humboldt Universität zu Berlin, Brook Taylor
Strasse 2, D-12489 Berlin, Germany
| | - Tilman Kottke
- Physical and
Biophysical Chemistry,
Department of Chemistry, Bielefeld University, Universitätsstrasse 25, 33615 Bielefeld, Germany
| | - J. Luis Pérez Lustres
- Institut für Chemie, Humboldt Universität zu Berlin, Brook Taylor
Strasse 2, D-12489 Berlin, Germany
- Research Center for Biological
Chemistry and Molecular Materials (CIQUS), Department of Physical
Chemistry, University of Santiago, c/Jenaro
de la Fuente s/n, E-15782 Santiago, Spain
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27
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Staudt H, Oesterhelt D, Grininger M, Wachtveitl J. Ultrafast excited-state deactivation of flavins bound to dodecin. J Biol Chem 2012; 287:17637-17644. [PMID: 22451648 DOI: 10.1074/jbc.m111.331652] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Dodecins, a group of flavin-binding proteins with a dodecameric quaternary structure, are able to incorporate two flavins within each of their six identical binding pockets building an aromatic tetrade with two tryptophan residues. Dodecin from the archaeal Halobacterium salinarum is a riboflavin storage device. We demonstrate that unwanted side reactions induced by reactive riboflavin species and degradation of riboflavin are avoided by ultrafast depopulation of the reactive excited state of riboflavin. Intriguingly, in this process, the staggered riboflavin dimers do not interact in ground and photoexcited states. Rather, within the tetrade assembly, each riboflavin is kept under the control of the respective adjacent tryptophan, which suggests that the stacked arrangement is a matter of optimizing the flavin load. We further identify an electron transfer in combination with a proton transfer as a central element of the effective excited state depopulation mechanism. Structural and functional comparisons of the archaeal dodecin with bacterial homologs reveal diverging evolution. Bacterial dodecins bind the flavin FMN instead of riboflavin and exhibit a clearly different binding pocket design with inverse incorporations of flavin dimers. The different adoption of flavin changes photochemical properties, making bacterial dodecin a comparably less efficient quencher of flavins. This supports a functional role different for bacterial and archaeal dodecins.
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Affiliation(s)
- Heike Staudt
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt am Main, Max von Laue-Strasse 7, 60438 Frankfurt am Main, Germany
| | - Dieter Oesterhelt
- Department of Membrane Biochemistry, Max-Planck-Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany
| | - Martin Grininger
- Department of Membrane Biochemistry, Max-Planck-Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany.
| | - Josef Wachtveitl
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt am Main, Max von Laue-Strasse 7, 60438 Frankfurt am Main, Germany.
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28
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Li H, Melø T, Razi Naqvi K. Triplets, radical cations and neutral semiquinone radicals of lumiflavin and riboflavin: An overhaul of previous pump–probe data and new multichannel absolute absorption spectra. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2012; 106:34-9. [DOI: 10.1016/j.jphotobiol.2011.10.003] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2011] [Revised: 08/04/2011] [Accepted: 10/04/2011] [Indexed: 10/16/2022]
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29
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Klaumünzer B, Kröner D, Lischka H, Saalfrank P. Non-adiabatic excited state dynamics of riboflavin after photoexcitation. Phys Chem Chem Phys 2012; 14:8693-702. [DOI: 10.1039/c2cp40978j] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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30
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Photoisomerization around a Fulvene Double Bond: Coherent Population Transfer to the Electronic Ground State? Chemphyschem 2011; 12:1860-71. [DOI: 10.1002/cphc.201001082] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2010] [Revised: 04/20/2011] [Indexed: 11/07/2022]
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31
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Brazard J, Usman A, Lacombat F, Ley C, Martin MM, Plaza P. New insights into the ultrafast photophysics of oxidized and reduced FAD in solution. J Phys Chem A 2011; 115:3251-62. [PMID: 21438617 DOI: 10.1021/jp110741y] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
The ultrafast photophysics of oxidized and reduced flavin adenine dinucleotide (FAD) in aqueous solution was studied by broadband UV-vis femtosecond transient absorption spectroscopy. We observed that oxidized FAD (FAD(ox)) in solution readily aggregates at submillimolar concentration. Upon excitation of FAD(ox), three excited-state lifetimes were found and assigned to three different species: the closed (stacked) conformation of the monomer (∼5.4 ps), the open (extended) conformation of the monomer (∼2.8 ns), and the dimer (∼27 ps). In the case of the stacked conformation of the monomer, we show that intramolecular electron transfer from the adenine to the isoalloxazine ring occurs with a time constant of 5.4 ps and is followed by charge recombination on a faster time scale, namely, 390 fs. We additionally demonstrate that deprotonated reduced flavin (FADH(-)) undergoes biphotonic ionization under high excitation fluence and dissociates into a hydrated electron and the neutral semiquinone radical FADH(•).
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Affiliation(s)
- Johanna Brazard
- Département de Chimie, École Normale Supérieure, Paris, France
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32
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Kobayashi A, Ohbayashi K, Aoki R, Chang HC, Kato M. Synthesis, structure and photophysical properties of a flavin-based platinum(II) complex. Dalton Trans 2011; 40:3484-9. [PMID: 21359278 DOI: 10.1039/c0dt01139h] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We synthesized a thiosemicarbazone-functionalized flavin (Fl-(H)TSC: 2-[2-(3,4-dihydro-7,8-dimethyl-2,4-dioxobenzo[g]pteridin-10(2H)-yl)ethylidene]-hydrazinecarbothioamide) and its Pt(II) complex [Pt(Fl-TSC)(2)], and characterized it using X-ray diffraction, UV-visible absorption and luminescence spectroscopy. X-ray structural analysis for [Pt(Fl-TSC)(2)] revealed that the structure of the isoalloxazine part was almost the same as that in lumiflavin (7,8,10-trimethylisoalloxazine), and the thiosemicarbazone moiety acted as a bidentate ligand to form a PtS(2)N(2) planar conformation. UV-visible absorption and luminescence spectra of these compounds were very similar to those of riboflavin, but the emission intensity and the lifetime decreased considerably. Theoretical calculations suggested that the charge-separated state (Fl˙(-)-TSC˙(+)) contributed to the faster quenching from the (1)π-π* emission state.
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Affiliation(s)
- Atsushi Kobayashi
- Division of Chemistry, Faculty of Science, Hokkaido University, North-10 West-8, Sapporo 060-0810, Japan.
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33
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Wenninger M, Fazio D, Megerle U, Trindler C, Schiesser S, Riedle E, Carell T. Flavin-Induced DNA Photooxidation and Charge Movement Probed by Ultrafast Transient Absorption Spectroscopy. Chembiochem 2011; 12:703-6. [DOI: 10.1002/cbic.201000730] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2010] [Indexed: 02/03/2023]
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34
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Roslund J, Roth M, Guyon L, Boutou V, Courvoisier F, Wolf JP, Rabitz H. Resolution of strongly competitive product channels with optimal dynamic discrimination: Application to flavins. J Chem Phys 2011; 134:034511. [DOI: 10.1063/1.3518751] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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35
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Megerle U, Wenninger M, Kutta RJ, Lechner R, König B, Dick B, Riedle E. Unraveling the flavin-catalyzed photooxidation of benzylic alcohol with transient absorption spectroscopy from sub-pico- to microseconds. Phys Chem Chem Phys 2011; 13:8869-80. [DOI: 10.1039/c1cp20190e] [Citation(s) in RCA: 88] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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36
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Klaumünzer B, Kröner D, Saalfrank P. (TD-)DFT calculation of vibrational and vibronic spectra of riboflavin in solution. J Phys Chem B 2010; 114:10826-34. [PMID: 20681576 DOI: 10.1021/jp100642c] [Citation(s) in RCA: 67] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The photophysics and photochemistry of flavin molecules are of great interest due to their role for the biological function of flavoproteins. An important analysis tool toward the understanding of the initial photoexcitation step of flavins is electronic and vibrational spectroscopy, both in frequency and time domains. Here we present quantum chemical [(time-dependent) density functional theory ((TD-)DFT)] calculations for vibrational spectra of riboflavin, the parent molecule of biological blue-light receptor chromophores, in its electronic ground (S(0)) and lowest singlet excited states (S(1)). Further, vibronic absorption spectra for the S(0) --> S(1) transition and vibronic emission spectra for the reverse process are calculated, both including mode mixing. Solvent effects are partially accounted for by using a polarizable continuum model (PCM) or a conductor-like screening model (COSMO). Calculated vibrational and electronic spectra are in good agreement with measured ones and help to assign the experimental signals arising from photoexcitation of flavins. In particular, upon photoexcitation a loss of double bond character in the polar region of the ring system is observed which leads to vibronic fine structure in the electronic spectra. Besides vibronic effects, solvent effects are important for understanding the photophysics of flavins in solution quantitatively.
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Affiliation(s)
- Bastian Klaumünzer
- Institut für Chemie, Universität Potsdam, Karl-Liebknecht-Strasse 24-25, D-14476 Potsdam, Germany
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37
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Nakabayashi T, Islam MS, Ohta N. Fluorescence decay dynamics of flavin adenine dinucleotide in a mixture of alcohol and water in the femtosecond and nanosecond time range. J Phys Chem B 2010; 114:15254-60. [PMID: 20964373 DOI: 10.1021/jp1063066] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Fluorescence decays of flavin adenine dinucleotide (FAD) that is a typical autofluorescent species in cells and tissues have been measured in a mixture of alcohol and water in the femtosecond and nanosecond time range. The fluorescence lifetimes of both the stacked conformation between the isoalloxazine and adenine moieties in close proximity and the extended open conformation in water are affected by the addition of alcohol. The nanosecond fluorescence lifetime of the open conformation increases with decreasing dielectric constant of the medium, contributing to the enhancement of the fluorescence intensity of FAD in less dielectric media. The fluorescence lifetime of the open conformation is also affected by medium viscosity, suggesting that the photoexcited open conformation is quenched by the dynamic interaction between the two aromatic rings. The fluorescence component decaying in tens of picoseconds is attributed to the stacked conformation that shows the efficient fluorescence quenching due to the intramolecular electron transfer. The picosecond fluorescence lifetime of the stacked conformation increases with decreasing dielectric constant, suggesting the shift of the distribution of the stacked conformation to a longer intramolecular distance between the two aromatic rings in less dielectric media. The pre-exponential factor of the picosecond decaying component relative to that of the nanosecond one decreases with the increase of the alcohol concentration in the femtosecond time-resolved fluorescence, which demonstrates the increase in the population of the open conformation with the reduction of the dielectric constant. The possibility to evaluate the polar environment in a cell by the fluorescence lifetime of FAD is discussed based on the results obtained.
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Affiliation(s)
- Takakazu Nakabayashi
- Research Institute for Electronic Science (RIES), Hokkaido University, Sapporo 001-0020, Japan.
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38
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Brazard J, Usman A, Lacombat F, Ley C, Martin MM, Plaza P, Mony L, Heijde M, Zabulon G, Bowler C. Spectro−Temporal Characterization of the Photoactivation Mechanism of Two New Oxidized Cryptochrome/Photolyase Photoreceptors. J Am Chem Soc 2010; 132:4935-45. [DOI: 10.1021/ja1002372] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Johanna Brazard
- UMR 8640 CNRS-ENS-UPMC, Département de Chimie, Ecole Normale Supérieure, 24 rue Lhomond, 75005 Paris, France, UMR 8601 CNRS, Laboratoire de Chimie et Biochimie Pharmacologies et Toxicologiques, Université Paris Descartes, 12 rue de l’Ecole de médecine, 75006 Paris, France, and UMR 8186 CNRS-ENS, Département de Biologie, Ecole Normale Supérieure, 46 rue d’Ulm, 75005 Paris, France
| | - Anwar Usman
- UMR 8640 CNRS-ENS-UPMC, Département de Chimie, Ecole Normale Supérieure, 24 rue Lhomond, 75005 Paris, France, UMR 8601 CNRS, Laboratoire de Chimie et Biochimie Pharmacologies et Toxicologiques, Université Paris Descartes, 12 rue de l’Ecole de médecine, 75006 Paris, France, and UMR 8186 CNRS-ENS, Département de Biologie, Ecole Normale Supérieure, 46 rue d’Ulm, 75005 Paris, France
| | - Fabien Lacombat
- UMR 8640 CNRS-ENS-UPMC, Département de Chimie, Ecole Normale Supérieure, 24 rue Lhomond, 75005 Paris, France, UMR 8601 CNRS, Laboratoire de Chimie et Biochimie Pharmacologies et Toxicologiques, Université Paris Descartes, 12 rue de l’Ecole de médecine, 75006 Paris, France, and UMR 8186 CNRS-ENS, Département de Biologie, Ecole Normale Supérieure, 46 rue d’Ulm, 75005 Paris, France
| | - Christian Ley
- UMR 8640 CNRS-ENS-UPMC, Département de Chimie, Ecole Normale Supérieure, 24 rue Lhomond, 75005 Paris, France, UMR 8601 CNRS, Laboratoire de Chimie et Biochimie Pharmacologies et Toxicologiques, Université Paris Descartes, 12 rue de l’Ecole de médecine, 75006 Paris, France, and UMR 8186 CNRS-ENS, Département de Biologie, Ecole Normale Supérieure, 46 rue d’Ulm, 75005 Paris, France
| | - Monique M. Martin
- UMR 8640 CNRS-ENS-UPMC, Département de Chimie, Ecole Normale Supérieure, 24 rue Lhomond, 75005 Paris, France, UMR 8601 CNRS, Laboratoire de Chimie et Biochimie Pharmacologies et Toxicologiques, Université Paris Descartes, 12 rue de l’Ecole de médecine, 75006 Paris, France, and UMR 8186 CNRS-ENS, Département de Biologie, Ecole Normale Supérieure, 46 rue d’Ulm, 75005 Paris, France
| | - Pascal Plaza
- UMR 8640 CNRS-ENS-UPMC, Département de Chimie, Ecole Normale Supérieure, 24 rue Lhomond, 75005 Paris, France, UMR 8601 CNRS, Laboratoire de Chimie et Biochimie Pharmacologies et Toxicologiques, Université Paris Descartes, 12 rue de l’Ecole de médecine, 75006 Paris, France, and UMR 8186 CNRS-ENS, Département de Biologie, Ecole Normale Supérieure, 46 rue d’Ulm, 75005 Paris, France
| | - Laetitia Mony
- UMR 8640 CNRS-ENS-UPMC, Département de Chimie, Ecole Normale Supérieure, 24 rue Lhomond, 75005 Paris, France, UMR 8601 CNRS, Laboratoire de Chimie et Biochimie Pharmacologies et Toxicologiques, Université Paris Descartes, 12 rue de l’Ecole de médecine, 75006 Paris, France, and UMR 8186 CNRS-ENS, Département de Biologie, Ecole Normale Supérieure, 46 rue d’Ulm, 75005 Paris, France
| | - Marc Heijde
- UMR 8640 CNRS-ENS-UPMC, Département de Chimie, Ecole Normale Supérieure, 24 rue Lhomond, 75005 Paris, France, UMR 8601 CNRS, Laboratoire de Chimie et Biochimie Pharmacologies et Toxicologiques, Université Paris Descartes, 12 rue de l’Ecole de médecine, 75006 Paris, France, and UMR 8186 CNRS-ENS, Département de Biologie, Ecole Normale Supérieure, 46 rue d’Ulm, 75005 Paris, France
| | - Gérald Zabulon
- UMR 8640 CNRS-ENS-UPMC, Département de Chimie, Ecole Normale Supérieure, 24 rue Lhomond, 75005 Paris, France, UMR 8601 CNRS, Laboratoire de Chimie et Biochimie Pharmacologies et Toxicologiques, Université Paris Descartes, 12 rue de l’Ecole de médecine, 75006 Paris, France, and UMR 8186 CNRS-ENS, Département de Biologie, Ecole Normale Supérieure, 46 rue d’Ulm, 75005 Paris, France
| | - Chris Bowler
- UMR 8640 CNRS-ENS-UPMC, Département de Chimie, Ecole Normale Supérieure, 24 rue Lhomond, 75005 Paris, France, UMR 8601 CNRS, Laboratoire de Chimie et Biochimie Pharmacologies et Toxicologiques, Université Paris Descartes, 12 rue de l’Ecole de médecine, 75006 Paris, France, and UMR 8186 CNRS-ENS, Département de Biologie, Ecole Normale Supérieure, 46 rue d’Ulm, 75005 Paris, France
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Salzmann S, Silva-Junior MR, Thiel W, Marian CM. Influence of the LOV domain on low-lying excited states of flavin: a combined quantum-mechanics/molecular-mechanics investigation. J Phys Chem B 2010; 113:15610-8. [PMID: 19891470 DOI: 10.1021/jp905599k] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The ground and low-lying excited states of flavin mononucleotide (FMN) in the light, oxygen, and voltage sensitive (LOV) domain of the blue-light photosensor YtvA of Bacillus subtilis were studied by means of combined quantum-mechanical/molecular-mechanical (QM/MM) methods. The FMN cofactor (without the side chain) was treated with density functional theory (DFT) for the geometry optimizations and a combination of DFT and multireference configuration interaction (MRCI) for the determination of the excitation energies, while the protein environment was represented by the CHARMM force field. In addition, several important amino acid side chains, including the reactive cysteine residue, were included in the QM region in order to probe their influence on the spectral properties of the cofactor in two protein conformations. Spin-orbit coupling was taken into account employing an efficient, nonempirical spin-orbit mean-field Hamiltonian. Our results reveal that the protein environment of YtvA-LOV induces spectral shifts for the (pi pi*) states that are similar to those in aqueous solution. In contrast, the blue shifts of the (n pi*) states are smaller in the protein environment, enabling a participation of these states in the decay processes of the optically bright S(1) state. Increased spin-orbit coupling between the initially populated S(1) state and the T(1) and T(2) states is found in YtvA-LOV as compared to free lumiflavine in water. The enhanced singlet-triplet coupling is brought about partially by configuration interaction with (n pi*) states at the slightly out-of-plane distorted minimum geometry. In addition, an external heavy-atom effect is observed when the sulfur atom of the nearby cysteine residue is included in the QM region, in line with experimental findings.
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Affiliation(s)
- Susanne Salzmann
- Institute of Theoretical and Computational Chemistry, Heinrich Heine University Düsseldorf, D-40225 Düsseldorf, Germany
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Salzmann S, Martinez-Junza V, Zorn B, Braslavsky SE, Mansurova M, Marian CM, Gärtner W. Photophysical Properties of Structurally and Electronically Modified Flavin Derivatives Determined by Spectroscopy and Theoretical Calculations. J Phys Chem A 2009; 113:9365-75. [DOI: 10.1021/jp905724b] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Susanne Salzmann
- Institute of Theoretical and Computational Chemistry, Heinrich Heine University, Düsseldorf, Universitätsstrasse 1, Geb. 26.32, 40225 Düsseldorf, Germany, and Max-Planck-Institute for Bioinorganic Chemistry, Postfach 101365, 45410 Mülheim an der Ruhr, Germany
| | - Víctor Martinez-Junza
- Institute of Theoretical and Computational Chemistry, Heinrich Heine University, Düsseldorf, Universitätsstrasse 1, Geb. 26.32, 40225 Düsseldorf, Germany, and Max-Planck-Institute for Bioinorganic Chemistry, Postfach 101365, 45410 Mülheim an der Ruhr, Germany
| | - Björn Zorn
- Institute of Theoretical and Computational Chemistry, Heinrich Heine University, Düsseldorf, Universitätsstrasse 1, Geb. 26.32, 40225 Düsseldorf, Germany, and Max-Planck-Institute for Bioinorganic Chemistry, Postfach 101365, 45410 Mülheim an der Ruhr, Germany
| | - Silvia E. Braslavsky
- Institute of Theoretical and Computational Chemistry, Heinrich Heine University, Düsseldorf, Universitätsstrasse 1, Geb. 26.32, 40225 Düsseldorf, Germany, and Max-Planck-Institute for Bioinorganic Chemistry, Postfach 101365, 45410 Mülheim an der Ruhr, Germany
| | - Madina Mansurova
- Institute of Theoretical and Computational Chemistry, Heinrich Heine University, Düsseldorf, Universitätsstrasse 1, Geb. 26.32, 40225 Düsseldorf, Germany, and Max-Planck-Institute for Bioinorganic Chemistry, Postfach 101365, 45410 Mülheim an der Ruhr, Germany
| | - Christel M. Marian
- Institute of Theoretical and Computational Chemistry, Heinrich Heine University, Düsseldorf, Universitätsstrasse 1, Geb. 26.32, 40225 Düsseldorf, Germany, and Max-Planck-Institute for Bioinorganic Chemistry, Postfach 101365, 45410 Mülheim an der Ruhr, Germany
| | - Wolfgang Gärtner
- Institute of Theoretical and Computational Chemistry, Heinrich Heine University, Düsseldorf, Universitätsstrasse 1, Geb. 26.32, 40225 Düsseldorf, Germany, and Max-Planck-Institute for Bioinorganic Chemistry, Postfach 101365, 45410 Mülheim an der Ruhr, Germany
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Salzmann S, Marian CM. The photophysics of alloxazine: a quantum chemical investigation in vacuum and solution. Photochem Photobiol Sci 2009; 8:1655-66. [DOI: 10.1039/b9pp00022d] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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