Surface-enhanced Raman spectroscopy to probe photoreaction pathways and kinetics of isolated reactants on surfaces: flat versus curved substrates

Molecular Photoswitching in Confined Spaces

In nature, light is harvested by photoactive proteins to drive a range of biological processes, including photosynthesis, phototaxis, vision, and ultimately life. Bacteriorhodopsin, for example, is a protein embedded within archaeal cell membranes that binds the chromophore retinal within its hydrophobic pocket. Exposure to light triggers regioselective photoisomerization of the confined retinal, which in turn initiates a cascade of conformational changes within the protein, triggering proton flux against the concentration gradient, providing the microorganisms with the energy to live. We are inspired by these functions in nature to harness light energy using synthetic photoswitches under confinement. Like retinal, synthetic photoswitches require some degree of conformational flexibility to isomerize. In nature, the conformational change associated with retinal isomerization is accommodated by the structural flexibility of the opsin host, yet it results in steric communication between the chromophore and the protein. Similarly, we strive to design systems wherein isomerization of confined photoswitches results in steric communication between a photoswitch and its confining environment. To achieve this aim, a balance must be struck between molecular crowding and conformational freedom under confinement: too much crowding prevents switching, whereas too much freedom resembles switching of isolated molecules in solution, preventing communication.

In this Account, we discuss five classes of synthetic light-switchable compounds—diarylethenes, anthracenes, azobenzenes, spiropyrans, and donor–acceptor Stenhouse adducts—comparing their behaviors under confinement and in solution. The environments employed to confine these photoswitches are diverse, ranging from planar surfaces to nanosized cavities within coordination cages, nanoporous frameworks, and nanoparticle aggregates. The trends that emerge are primarily dependent on the nature of the photoswitch and not on the material used for confinement. In general, we find that photoswitches requiring less conformational freedom for switching are, as expected, more straightforward to isomerize reversibly under confinement. Because these compounds undergo only small structural changes upon isomerization, however, switching does not propagate into communication with their environment. Conversely, photoswitches that require more conformational freedom are more challenging to switch under confinement but also can influence system-wide behavior.

Although we are primarily interested in the effects of geometric constraints on photoswitching under confinement, additional effects inevitably emerge when a compound is removed from solution and placed within a new, more crowded environment. For instance, we have found that compounds that convert to zwitterionic isomers upon light irradiation often experience stabilization of these forms under confinement. This effect results from the mutual stabilization of zwitterions that are brought into close proximity on surfaces or within cavities. Furthermore, photoswitches can experience preorganization under confinement, influencing the selectivity and efficiency of their photoreactions. Because intermolecular interactions arising from confinement cannot be considered independently from the effects of geometric constraints, we describe all confinement effects concurrently throughout this Account.

Chemical reactivity under nanoconfinement

Confining molecules can fundamentally change their chemical and physical properties. Confinement effects are considered instrumental at various stages of the origins of life, and life continues to rely on layers of compartmentalization to maintain an out-of-equilibrium state and efficiently synthesize complex biomolecules under mild conditions. As interest in synthetic confined systems grows, we are realizing that the principles governing reactivity under confinement are the same in abiological systems as they are in nature. In this Review, we categorize the ways in which nanoconfinement effects impact chemical reactivity in synthetic systems. Under nanoconfinement, chemical properties can be modulated to increase reaction rates, enhance selectivity and stabilize reactive species. Confinement effects also lead to changes in physical properties. The fluorescence of light emitters, the colours of dyes and electronic communication between electroactive species can all be tuned under confinement. Within each of these categories, we elucidate design principles and strategies that are widely applicable across a range of confined systems, specifically highlighting examples of different nanocompartments that influence reactivity in similar ways.

Adaptable and Reprogrammable Surfaces

Establishing control over chemical reactions on interfaces is a key challenge in contemporary surface and materials science, in particular when introducing well-defined functionalities in a reversible fashion. Reprogrammable, adaptable and functional interfaces require sophisticated chemistries to precisely equip them with specific functionalities having tailored properties. In the last decade, reversible chemistries-both covalent and noncovalent-have paved the way to precision functionalize 2 or 3D structures that provide both spatial and temporal control. A critical literature assessment reveals that methodologies for writing and erasing substrates exist, yet are still far from reaching their full potential. It is thus critical to assess the current status and to identify avenues to overcome the existing limitations. Herein, the current state-of-the-art in the field of reversible chemistry on surfaces is surveyed, while concomitantly identifying the challenges-not only synthetic but also in current surface characterization methods. The potential within reversible chemistry on surfaces to function as true writeable memories devices is identified, and the latest developments in readout technologies are discussed. Finally, we explore how spatial and temporal control over reversible, light-induced chemistries has the potential to drive the future of functional interface design, especially when combined with powerful laser lithographic applications.

Volume-Enhanced Raman Scattering Detection of Viruses

Virus detection and analysis are of critical importance in biological fields and medicine. Surface-enhanced Raman scattering (SERS) has shown great promise in small molecule and even single molecule detection, and can provide fingerprint signals of molecules. Despite the powerful detection capabilities of SERS, the size discrepancy between the SERS "hot spots" (generally, <10 nm) and viruses (usually, sub-100 nm) yields poor detection reliability of viruses. Inspired by the concept of molecular imprinting, a volume-enhanced Raman scattering (VERS) substrate composed of hollow nanocones at the bottom of microbowls (HNCMB) is developed. The hollow nanocones of the resulting VERS substrates serve a twofold purpose: 1) extending the region of Raman signal enhancement from the nanocone surface (e.g., surface "hot spots") to the hollow area within the cone (e.g., volume "hot spots")-a novel method of Raman signal enhancement, and 2) directing analyte such as viruses of a wide range of sizes to those VERS "hot spots" while simultaneously increasing the surface area contributing to SERS. Using HNCMB VERS substrates, greatly improved Raman signals of single viruses are demonstrated, an achievement with important implications in disease diagnostics and monitoring, biomedical fields, as well as in clinical treatment.

Novel Competitive Fluorescence Sensing Platform for L-carnitine Based on Cationic Pillar[5]Arene Modified Gold Nanoparticles

Supramolecular host-guest interaction and sensing between cationic pillar[5]arenes (CP5) and L-carnitine were developed by the competitive host-guest recognition for the first time. The fluorescence sensing platform was constructed by CP5 functionalized Au nanoparticles (CP5@Au-NPs) as receptor and probe (rhodamine 123, R123), which shown high sensitivity and selectivity for L-carnitine detection. Due to the negative charge and molecular size properties of L-carnitine, it can be highly captured by the CP5 via electrostatic interactions and hydrophobic interactions. The host-guest mechanism between PP5 and L-carnitine was studied by ¹H NMR and molecular docking, indicating that more affinity binding force of CP5 with L-carnitine. Therefore, a selective and sensitive fluorescent method was developed. It has a linear response of 0.1–2.0 and 2.0–25.0 μM and a detection limit of 0.067 μM (S/N = 3). The fluorescent sensing platform was also used to detect L-carnitine in human serum and milk samples, which provided potential applications for the detection of drugs abuse and had path for guarding a serious food safety issues.

Activating [4 + 4] photoreactivity in the solid-state via complexation: from 9-(methylaminomethyl)anthracene to its silver(i) complexes

The [4 + 4] photoreactivity of the anthracene derivative 9-(methylaminomethyl)anthracene (MAMA) has been investigated in solution, gel medium and in the solid state. While quantitative formation of the cyloaddition photoproduct was achieved upon irradiation at λ = 365 nm of ethanol solutions of MAMA, only partial and slow conversion was detected in gels of low molecular weight gelators, and solid-state reactivity was not observed due to the unfavourable relative orientation of the anthracene moieties in the crystal. In hexafluorophosphate, tetrafluoroborate and nitrate silver(i) complexes, however, 9-(methylaminomethyl)anthracene exhibits a more favourable mutual orientation for the aromatic fragments, and [4 + 4] photoreactivity resulted. All compounds were structurally characterized via single crystal and/or X-ray powder diffraction and by Raman spectroscopy; this last technique proved effective in detection of the photoproduct in all solid state complexes.

Nanoscale Surface Curvature Effects on Ligand-Nanoparticle Interactions: A Plasmon-Enhanced Spectroscopic Study of Thiolated Ligand Adsorption, Desorption, and Exchange on Gold Nanoparticles

The interfacial adsorption, desorption, and exchange behaviors of thiolated ligands on nanotextured Au nanoparticle surfaces exhibit phenomenal site-to-site variations essentially dictated by the local surface curvatures, resulting in heterogeneous thermodynamic and kinetic profiles remarkably more sophisticated than those associated with the self-assembly of organothiol ligand monolayers on atomically flat Au surfaces. Here we use plasmon-enhanced Raman scattering as a spectroscopic tool combining time-resolving and molecular fingerprinting capabilities to quantitatively correlate the ligand dynamics with detailed molecular structures in real time under a diverse set of ligand adsorption, desorption, and exchange conditions at both equilibrium and nonequilibrium states, which enables us to delineate the effects of nanoscale surface curvature on the binding affinity, cooperativity, structural ordering, and the adsorption/desorption/exchange kinetics of organothiol ligands on colloidal Au nanoparticles. This work provides mechanistic insights on the key thermodynamic, kinetic, and geometric factors underpinning the surface curvature-dependent interfacial ligand behaviors, which serve as a central knowledge framework guiding the site-selective incorporation of desired surface functionalities into individual metallic nanoparticles for specific applications.

Topographically Flat Nanoplasmonic Sensor Chips for Biosensing and Materials Science

Nanoplasmonic sensors typically comprise arrangements of noble metal nanoparticles on a dielectric support. Thus, they are intrinsically characterized by surface topography with corrugations at the 10-100 nm length scale. While irrelevant in some bio- and chemosensing applications, it is also to be expected that the surface topography significantly influences the interaction between solids, fluids, nanoparticles and (bio)molecules, and the nanoplasmonic sensor surface. To address this issue, we present a wafer-scale nanolithography-based fabrication approach for high-temperature compatible, chemically inert, topographically flat, and laterally homogeneous nanoplasmonic sensor chips. We demonstrate their sensing performance on three different examples, for which we also carry out a direct comparison with a traditional nanoplasmonic sensor with representative surface corrugation. Specifically, we (i) quantify the film-thickness dependence of the glass transition temperature in poly(methyl metacrylate) thin films, (ii) characterize the adsorption and specific binding kinetics of the avidin-biotinylated bovine serum albumin protein system, and (iii) analyze supported lipid bilayer formation on SiO₂ surfaces.

Plasmon-enhanced nanoporous BiVO4 photoanodes for efficient photoelectrochemical water oxidation

Conversion of solar irradiation into chemical fuels such as hydrogen with the use of a photoelectrochemical (PEC) cell is an attractive strategy for green energy. The promising technique of incorporating metal nanoparticles (NPs) in the photoelectrodes is being explored to enhance the performance of the photoelectrodes. In this work, we developed Au-NPs-functionalized nanoporous BiVO4 photoanodes, and utilized the plasmonic effects of Au NPs to enhance the photoresponse. The plasmonic enhancement leads to an AM 1.5 photocurrent of 5.1 ± 0.1 mA cm(-2) at 1.23 V versus a reverse hydrogen electrode. We observed an enhancement of five times with respect to pristine BiVO4 in the photocurrent with long-term stability and high energy-conversion efficiency. The overall performance enhancement is attributed to the synergy between the nanoporous architecture of BiVO4 and the plasmonic effects of Au NPs. Our further study reveals that the commendable photoactivity arises from the different plasmonic effects and co-catalyst effects of Au NPs.

Nanoparticles functionalized with supramolecular host-guest systems for nanomedicine and healthcare

Synthetic macrocyclic host compounds can interact with suitable guest molecules via noncovalent interactions to form functional supramolecular systems. With the synergistic integration of the response of molecules and the unique properties at the nanoscale, nanoparticles functionalized with the host-guest supramolecular systems have shown great potentials for a broad range of applications in the fields of nanoscience and nanotechnology. In this review article, we focus on the applications of the nanoparticles functionalized with supramolecular host-guest systems in nanomedicine and healthcare, including therapeutic delivery, imaging, sensing and removal of harmful substances. A large number of examples are included to elucidate the working mechanisms, advantages, limitations and future developments of the nanoparticle-supramolecule systems in these applications.

Remarkable acceleration of template-directed photodimerisation of 9-phenylethynylanthracene derivatives assisted by complementary salt bridge formation

The photodimerisation of 9-phenylethynylanthracene-bound carboxylic acid monomers was remarkably accelerated in the presence of the complementary amidine dimer template.

Optimizing plasmonic nanoantennas via coordinated multiple coupling

Plasmonic nanoantennas, which can efficiently convert light from free space into sub-wavelength scale with the local field enhancement, are fundamental building blocks for nanophotonic systems. Predominant design methods, which exploit a single type of near- or far-field coupling in pairs or arrays of plasmonic nanostructures, have limited the tunability of spectral response and the local field enhancement. To overcome this limit, we are developing a general strategy towards exploiting the coordinated effects of multiple coupling. Using Au bowtie nanoantenna arrays with metal-insulator-metal configuration as examples, we numerically demonstrate that coordinated design and implementation of various optical coupling effects leads to both the increased tunability in the spectral response and the significantly enhanced electromagnetic field. Furthermore, we design and analyze a refractive index sensor with an ultra-high figure-of-merit (254), a high signal-to-noise ratio and a wide working range of refractive indices, and a narrow-band near-infrared plasmonic absorber with 100% absorption efficiency, high quality factor of up to 114 and a wide range of tunable wavelength from 800 nm to 1,500 nm. The plasmonic nanoantennas that exploit coordinated multiple coupling will benefit a broad range of applications, including label-free bio-chemical detection, reflective filter, optical trapping, hot-electron generation, and heat-assisted magnetic recording.

Plasmofluidics: Merging Light and Fluids at the Micro-/Nanoscale

Plasmofluidics is the synergistic integration of plasmonics and micro/nanofluidics in devices and applications in order to enhance performance. There has been significant progress in the emerging field of plasmofluidics in recent years. By utilizing the capability of plasmonics to manipulate light at the nanoscale, combined with the unique optical properties of fluids and precise manipulation via micro/nanofluidics, plasmofluidic technologies enable innovations in lab-on-a-chip systems, reconfigurable photonic devices, optical sensing, imaging, and spectroscopy. In this review article, the most recent advances in plasmofluidics are examined and categorized into plasmon-enhanced functionalities in microfluidics and microfluidics-enhanced plasmonic devices. The former focuses on plasmonic manipulations of fluids, bubbles, particles, biological cells, and molecules at the micro/nanoscale. The latter includes technological advances that apply microfluidic principles to enable reconfigurable plasmonic devices and performance-enhanced plasmonic sensors. The article is concluded with perspectives on the upcoming challenges, opportunities, and possible future directions of the emerging field of plasmofluidics.

Controlling Motion at the Nanoscale: Rise of the Molecular Machines

As our understanding and control of intra- and intermolecular interactions evolve, ever more complex molecular systems are synthesized and assembled that are capable of performing work or completing sophisticated tasks at the molecular scale. Commonly referred to as molecular machines, these dynamic systems comprise an astonishingly diverse class of motifs and are designed to respond to a plethora of actuation stimuli. In this Review, we outline the conditions that distinguish simple switches and rotors from machines and draw from a variety of fields to highlight some of the most exciting recent examples of opportunities for driven molecular mechanics. Emphasis is placed on the need for controllable and hierarchical assembly of these molecular components to display measurable effects at the micro-, meso-, and macroscales. As in Nature, this strategy will lead to dramatic amplification of the work performed via the collective action of many machines organized in linear chains, on functionalized surfaces, or in three-dimensional assemblies.

Engineering of parallel plasmonic-photonic interactions for on-chip refractive index sensors

Ultra-narrow linewidth in the extinction spectrum of noble metal nanoparticle arrays induced by the lattice plasmon resonances (LPRs) is of great significance for applications in plasmonic lasers and plasmonic sensors. However, the challenge of sustaining LPRs in an asymmetric environment greatly restricts their practical applications, especially for high-performance on-chip plasmonic sensors. Herein, we fully study the parallel plasmonic-photonic interactions in both the Au nanodisk arrays (NDAs) and the core/shell SiO2/Au nanocylinder arrays (NCAs). Different from the dipolar interactions in the conventionally studied orthogonal coupling, the horizontal propagating electric field introduces the out-of-plane "hot spots" and results in electric field delocalization. Through controlling the aspect ratio to manipulate the "hot spot" distributions of the localized surface plasmon resonances (LSPRs) in the NCAs, we demonstrate a high-performance refractive index sensor with a wide dynamic range of refractive indexes ranging from 1.0 to 1.5. Both high figure of merit (FOM) and high signal-to-noise ratio (SNR) can be maintained under these detectable refractive indices. Furthermore, the electromagnetic field distributions confirm that the high FOM in the wide dynamic range is attributed to the parallel coupling between the superstrate diffraction orders and the height-induced LSPR modes. Our study on the near-field "hot-spot" engineering and far-field parallel coupling paves the way towards improved understanding of the parallel LPRs and the design of high-performance on-chip refractive index sensors.

Au/Ag bimetal nanogap arrays with tunable morphologies for surface-enhanced Raman scattering

When Au and Ag were deposited onto two-dimensional polystyrene (PS) templates, a curved bimetallic film composed of nanocap-shaped Au/Ag units was formed.

Investigation of the Kinetics of a Surface Photocatalytic Reaction in Two Dimensions with Surface-enhanced Raman Scattering

Heterogeneous catalysis is a surface phenomenon. Yet, though the catalysis itself takes place on surfaces, the reactants and products rapidly take the form of another physical state, as either a liquid or a gas. Catalytic reactions within a self‐assembled monolayer are confined within two dimensions, as the molecules involved do not leave the surface. Surface‐enhanced Raman spectroscopy is an ideal technique to probe these self‐assembled monolayers as it gives molecular information in a measured volume limited to the surface. We show how surface‐enhanced Raman spectroscopy can be used to determine the reaction kinetics of a two‐dimensional reaction. As a proof of principle, we study the photocatalytic reduction of p‐nitrothiophenol. A study of the reaction rate and dilution effects leads to the conclusion that a dimerization must take place as one of the reaction steps.

Electrochemically Created Highly Surface Roughened Ag Nanoplate Arrays for SERS Biosensing Applications

Highly surface-roughened Ag nanoplate arrays are fabricated using a simple electrodeposition and in situ electrocorrosion method with inorganic borate ions as capping agent. The electrocorrosion process is induced by a change in the local pH value during the electrochemical growth, which is used to intentionally carve the electrodeposited structures. The three dimensionally arranged Ag nanoplates are integrated with substantial surface-enhanced Raman scattering (SERS) hot spots and are free of organic contaminations widely used as shaping agents in previous works, making them excellent candidate substrates for SERS biosensing applications. The SERS enhancement factor of the rough Ag nanoplates is estimated to be > 109. These Ag nanoplate arrays are used for SERS-based analysis of DNA hybridization monitoring, protein detection, and virus differentiation without any additional surface modifications or labelling. They all exhibit an extremely high detection sensitivity, reliability, and reproducibility.

In situ identification of crystal facet-mediated chemical reactions on tetrahexahedral gold nanocrystals using surface-enhanced Raman spectroscopy

Direct monitoring of a metal-catalyzed reaction by surface-enhanced Raman scattering (SERS) is always a challenging issue as it needs bifunctional metal structures that have plasmonic properties and also act as catalysts. Here we demonstrate that the tetrahexahedral (THH) gold nanocrystals (Au NCs) with exposed {520} facets give highly enhanced Raman signals from molecules at the interface, permitting in situ observation of chemical transformation from para-aminothiophenol (PATP) to 4,4'-dimercaptoazobenzene (DMAB). The origin of the intense SERS signals of DMAB is carefully investigated based on the comparison of the SERS spectra of PATP obtained with both the THH Au NCs and the Au nanospheres with the exposed {111} facets. It is elucidated that the high-index {520} facet rather than the localized surface plasmons of the THH Au NCs plays a key role in producing a high yield of the product DMAB which is accompanied by the selective enhancement of the characteristic Raman signals.

Controlling the surface environment of heterogeneous catalysts using self-assembled monolayers

Rationally designing and producing suitable catalysts to promote specific reaction pathways remains a major objective in heterogeneous catalysis. One approach involves using traditional catalytic materials modified with self-assembled monolayers (SAMs) to create a more favorable surface environment for specific product formation. A major advantage of SAM-based modifiers is their tendency to form consistent, highly ordered assembly structures on metal surfaces. In addition, both the attachment chemistry and tail structures can easily be tuned to facilitate specific interactions between reactants and the catalyst. In this Account, we summarize our recent modification approaches for tuning monolayer structure to improve catalytic performance for hydrogenation reactions on palladium and platinum catalysts. Each approach serves to direct selectivity by tuning a particular aspect of the system including the availability of specific active sites (active-site selection), intermolecular interactions between the reactants and modifiers (molecular recognition), and general steric or crowding effects. We have demonstrated that the tail moiety can be tuned to control the density of SAM modifiers on the surface. Infrared spectra of adsorbed CO probe molecules reveal that increasing the density of the thiols restricts the availability of contiguous active sites on catalyst terraces while maintaining accessibility to sites located at particle edges and steps. This technique was utilized to direct selectivity for the hydrogenation of furfural. Results obtained from SAM coatings with different surface densities indicated that, for this reaction, formation of the desirable products occurs primarily at particle edges and steps, whereas the undesired pathway occurs on particle terrace sites. As an alternative approach, the tail structure of the SAM precursor can be tuned to promote specific intermolecular interactions between the modifier and reactant in order to position reactant molecules in a desired orientation. This technique was utilized for the hydrogenation of cinnamaldehyde, which contains an aromatic phenyl moiety. By using a phenyl-containing SAM modifier with an appropriate tether length, > 90% selectivity toward reaction of the aldehyde group was achieved. In contrast, employing a modifier where the phenyl moiety was closer to the catalyst surface biased selectivity toward the hydrogenation of the C═C bond due to reorienting the molecule to a more "lying down" conformation. In addition to approaches that target specific interactions between the reactant and modified catalyst, we have demonstrated the use of SAMs to impose a steric or blocking effect, for example, during the hydrogenation of polyunsaturated fatty acids. The SAMs facilitated hydrogenation of polyunsaturated to monounsaturated fatty acids but inhibited further hydrogenation to the completely saturated species due to the sterically hindered, single "kink" shape of the monounsaturated product. The recent contributions discussed in this Account demonstrate the significant potential for this approach to design improved catalysts and to develop a deeper understanding of mechanistic effects due to the near surface environment.

Nanotools for neuroscience and brain activity mapping

Neuroscience is at a crossroads. Great effort is being invested into deciphering specific neural interactions and circuits. At the same time, there exist few general theories or principles that explain brain function. We attribute this disparity, in part, to limitations in current methodologies. Traditional neurophysiological approaches record the activities of one neuron or a few neurons at a time. Neurochemical approaches focus on single neurotransmitters. Yet, there is an increasing realization that neural circuits operate at emergent levels, where the interactions between hundreds or thousands of neurons, utilizing multiple chemical transmitters, generate functional states. Brains function at the nanoscale, so tools to study brains must ultimately operate at this scale, as well. Nanoscience and nanotechnology are poised to provide a rich toolkit of novel methods to explore brain function by enabling simultaneous measurement and manipulation of activity of thousands or even millions of neurons. We and others refer to this goal as the Brain Activity Mapping Project. In this Nano Focus, we discuss how recent developments in nanoscale analysis tools and in the design and synthesis of nanomaterials have generated optical, electrical, and chemical methods that can readily be adapted for use in neuroscience. These approaches represent exciting areas of technical development and research. Moreover, unique opportunities exist for nanoscientists, nanotechnologists, and other physical scientists and engineers to contribute to tackling the challenging problems involved in understanding the fundamentals of brain function.

Photoreaction of matrix-isolated dihydroazulene-functionalized molecules on Au{111}

Dihydroazulenes are photochromic molecules that reversibly switch between two distinct geometric and conductivity states. Molecular design, surface attachment, and precise control over the assembly of such molecular machines are critical in order to understand molecular function and motion at the nanoscale. Here, we use surface-enhanced Raman spectroscopy on special atomically flat, plasmonically enhanced substrates to measure the photoreaction kinetics of isolated dihydroazulene-functionalized molecules assembled on Au{111}, which undergo a ring-opening reaction upon illumination with UV light and switch back to the initial isomer via thermal relaxation. Photokinetic analyses reveal the high efficiency of the dihydroazulene photoreaction on solid substrates compared to other photoswitches. An order of magnitude decrease in the photoreaction cross section of surface-bound dihydroazulenes was observed when compared with the cross sections of these molecules in solution.