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Li X, Wu S, Feng Z, Ning K, Ji D, Yu L, Hu W. Label-Free and Real-Time Optical Detection of Affinity Binding of the Antibody on Adherent Live Cells. Anal Chem 2024; 96:1112-1120. [PMID: 38181398 DOI: 10.1021/acs.analchem.3c03899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2024]
Abstract
Oblique-incidence reflectivity difference (OIRD) is a novel real-time, label-free, and nondestructive optical detection method and exhibits encouraging application in the detection of antibody/DNA microarrays. In this study, for the first time, an OIRD label-free immunoassay was achieved by using adherent live cells as the probe. The cells were cultured on glass cells, and the affinity binding of antibodies targeted on the HLA class I antigen of the cell surface was detected with an OIRD. The results show that an OIRD is able to detect the binding process of anti-human HLA-A, B, and C antibodies on MDA-MB-231 cells and HUVEC cells. Control experiments and complementary fluorescence analysis confirmed the high detection specificity and good quantitative virtue of the OIRD label-free immunoassay. Label-free OIRD imaging analysis of cell microarrays was further demonstrated successfully, and the underlying optical mechanism was revealed by combining the theoretical modeling. This work explores the use of live cells as probes for an OIRD immunoassay, thus expanding the potential applications of the OIRD in the field of pathological analysis, disease diagnosis, and drug screening, among others.
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Affiliation(s)
- Xiaoyi Li
- Key Laboratory of Luminescence Analysis and Molecular Sensing (Southwest University), Ministry of Education, School of Materials and Energy, Chongqing Key Laboratory for Advanced Materials and Technologies of Clean Energies, Southwest University, Chongqing 400715, P. R. China
| | - Shiming Wu
- Key Laboratory of Luminescence Analysis and Molecular Sensing (Southwest University), Ministry of Education, School of Materials and Energy, Chongqing Key Laboratory for Advanced Materials and Technologies of Clean Energies, Southwest University, Chongqing 400715, P. R. China
| | - Zhihao Feng
- Key Laboratory of Luminescence Analysis and Molecular Sensing (Southwest University), Ministry of Education, School of Materials and Energy, Chongqing Key Laboratory for Advanced Materials and Technologies of Clean Energies, Southwest University, Chongqing 400715, P. R. China
| | - Ke Ning
- Key Laboratory of Luminescence Analysis and Molecular Sensing (Southwest University), Ministry of Education, School of Materials and Energy, Chongqing Key Laboratory for Advanced Materials and Technologies of Clean Energies, Southwest University, Chongqing 400715, P. R. China
| | - Dandan Ji
- Key Laboratory of Luminescence Analysis and Molecular Sensing (Southwest University), Ministry of Education, School of Materials and Energy, Chongqing Key Laboratory for Advanced Materials and Technologies of Clean Energies, Southwest University, Chongqing 400715, P. R. China
| | - Ling Yu
- Key Laboratory of Luminescence Analysis and Molecular Sensing (Southwest University), Ministry of Education, School of Materials and Energy, Chongqing Key Laboratory for Advanced Materials and Technologies of Clean Energies, Southwest University, Chongqing 400715, P. R. China
| | - Weihua Hu
- Key Laboratory of Luminescence Analysis and Molecular Sensing (Southwest University), Ministry of Education, School of Materials and Energy, Chongqing Key Laboratory for Advanced Materials and Technologies of Clean Energies, Southwest University, Chongqing 400715, P. R. China
- Key Laboratory of Laser Technology and Optoelectronic Functional Materials of Hainan Province, Key Laboratory of Functional Materials and Photoelectrochemistry of Haikou, College of Chemistry and Chemical Engineering, Hainan Normal University, Haikou 571158, P. R. China
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Li R, Fan H, Chen Y, Huang J, Liu GL, Huang L. Application of nanoplasmonic biosensors based on nanoarrays in biological and chemical detection. OPTICS EXPRESS 2023; 31:21586-21613. [PMID: 37381254 DOI: 10.1364/oe.470786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2022] [Accepted: 10/17/2022] [Indexed: 06/30/2023]
Abstract
Technological innovation, cost effectiveness, and miniaturization are key factors that determine the commercial adaptability and sustainability of sensing platforms. Nanoplasmonic biosensors based on nanocup or nanohole arrays are attractive for the development of various miniaturized devices for clinical diagnostics, health management, and environmental monitoring. In this review, we discuss the latest trends in the engineering and development of nanoplasmonic sensors as biodiagnostic tools for the highly sensitive detection of chemical and biological analytes. We focused on studies that have explored flexible nanosurface plasmon resonance systems using a sample and scalable detection approach in an effort to highlight multiplexed measurements and portable point-of-care applications.
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3
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Ha T, Yoo D, Heo C, Vidal-Codina F, Nguyen NC, Sim KI, Park SH, Cha W, Park S, Peraire J, Kim TT, Lee YH, Oh SH. Subwavelength Terahertz Resonance Imaging (STRING) for Molecular Fingerprinting. NANO LETTERS 2022; 22:10200-10207. [PMID: 36507551 DOI: 10.1021/acs.nanolett.2c04610] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Subwavelength terahertz (THz) imaging methods are highly desirable for biochemical sensing as well as materials sciences, yet sensitive spectral fingerprinting is still challenging in the frequency domain due to weak light-matter interactions. Here, we demonstrate subwavelength THz resonance imaging (STRING) that overcomes this limitation to achieve ultrasensitive molecular fingerprinting. STRING combines individual ring-shaped coaxial single resonators with near-field spectroscopy, yielding considerable sensitivity gains from both local field enhancement and the near-field effect. As an initial demonstration, we obtained spectral fingerprints from isomers of α-lactose and maltose monohydrates, achieving sensitivity that was enhanced by up to 10 orders of magnitude compared to far-field THz measurements with pelletized samples. Our results show that the STRING platform could enable the development of THz spectroscopy as a practical and sensitive tool for the fingerprinting and spectral imaging of molecules and nanoparticles.
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Affiliation(s)
- Taewoo Ha
- Center for Integrated Nanostructure Physics, Institute for Basic Science, Sungkyunkwan University, Suwon16419, Republic of Korea
| | - Daehan Yoo
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, Minnesota55455, United States
| | - Chaejeong Heo
- Center for Integrated Nanostructure Physics, Institute for Basic Science, Sungkyunkwan University, Suwon16419, Republic of Korea
- Institute for Quantum Biophysics, Sungkyunkwan University, Suwon16419, Republic of Korea
| | - Ferran Vidal-Codina
- Department of Aeronautics and Astronautics, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
| | - Ngoc-Cuong Nguyen
- Department of Aeronautics and Astronautics, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
| | - Kyung Ik Sim
- Center for Integrated Nanostructure Physics, Institute for Basic Science, Sungkyunkwan University, Suwon16419, Republic of Korea
| | - Sang Hyun Park
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, Minnesota55455, United States
| | - Wujoon Cha
- Center for Integrated Nanostructure Physics, Institute for Basic Science, Sungkyunkwan University, Suwon16419, Republic of Korea
| | - Sungsu Park
- School of Mechanical Engineering, Sungkyunkwan University, Suwon16419, Republic of Korea
| | - Jaime Peraire
- Department of Aeronautics and Astronautics, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
| | - Teun-Teun Kim
- Department of Physics, University of Ulsan, Ulsan44610, Republic of Korea
| | - Young Hee Lee
- Center for Integrated Nanostructure Physics, Institute for Basic Science, Sungkyunkwan University, Suwon16419, Republic of Korea
| | - Sang-Hyun Oh
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, Minnesota55455, United States
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4
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Lee H, Lee TY, Park Y, Cho KS, Rho YG, Choo H, Jeon H. Structurally engineered colloidal quantum dot phosphor using TiO 2 photonic crystal backbone. LIGHT, SCIENCE & APPLICATIONS 2022; 11:318. [PMID: 36319628 PMCID: PMC9626542 DOI: 10.1038/s41377-022-01020-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Revised: 10/12/2022] [Accepted: 10/13/2022] [Indexed: 06/16/2023]
Abstract
Photonic crystal (PhC) phosphor, in which the phosphor material is periodically modulated for an enhancement in color-conversion efficiency via resonant absorption of excitation photons, is a paradigm-shifting structural phosphor platform. Two-dimensional (2D) square-lattice PhC phosphor is currently considered the most advanced platform because of not only its high efficiency, but also its immunity to excitation polarization. In the present study, two major modifications are made to further improve the performance of the 2D PhC phosphor: increasing the refractive index contrast and planarizing the surface. The index contrast is improved by replacing the PhC backbone material with TiO2 whereas the surface planarization is achieved by removing excessive colloidal quantum dots from the surface. In comparison with the reference phosphor, the upgraded PhC phosphor exhibits ~59 times enhanced absorption (in simulations) and ~7 times enhanced emission (in experiments), both of which are unprecedentedly high. Our results not only brighten the viability and applicability of the PhC phosphor but also spur the phosphor development through structural engineering of phosphor materials.
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Affiliation(s)
- Hansol Lee
- Department of Physics and Astronomy, Seoul National University, Seoul, 08826, Republic of Korea
- Inter-university Semiconductor Research Center, Seoul National University, Seoul, 08826, Republic of Korea
| | - Tae-Yun Lee
- Department of Physics and Astronomy, Seoul National University, Seoul, 08826, Republic of Korea
- Inter-university Semiconductor Research Center, Seoul National University, Seoul, 08826, Republic of Korea
| | - Yeonsang Park
- Department of Physics, Chungnam National University, Daejeon, 34134, Republic of Korea
- Institute of Quantum Systems, Chungnam National University, Daejeon, 34134, Republic of Korea
| | - Kyung-Sang Cho
- Samsung Advanced Institute of Technology, Suwon, 16678, Republic of Korea
| | - Young-Geun Rho
- Samsung Advanced Institute of Technology, Suwon, 16678, Republic of Korea.
| | - Hyuck Choo
- Samsung Advanced Institute of Technology, Suwon, 16678, Republic of Korea.
| | - Heonsu Jeon
- Department of Physics and Astronomy, Seoul National University, Seoul, 08826, Republic of Korea.
- Inter-university Semiconductor Research Center, Seoul National University, Seoul, 08826, Republic of Korea.
- Institute of Applied Physics, Seoul National University, Seoul, 08826, Republic of Korea.
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5
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Menze L, Duarte PA, Haddon L, Chu M, Chen J. Selective Single-Cell Sorting Using a Multisectorial Electroactive Nanowell Platform. ACS NANO 2022; 16:211-220. [PMID: 34559518 DOI: 10.1021/acsnano.1c05668] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Current approaches in targeted patient treatments often require the rapid isolation of specific rare target cells. Stream-based dielectrophoresis (DEP) based cell sorters have the limitation that the maximum number of sortable cell types is equivalent to the number of output channels, which makes upscaling to a higher number of different cell types technically challenging. Here, we present a microfluidic platform for selective single-cell sorting that bypasses this limitation. The platform consists of 10 000 nanoliter wells which are placed on top of interdigitated electrodes (IDEs) that facilitate dielectrophoresis-driven capture of cells. By use of a multisectorial design formed by 10 individually addressable IDE structures, our platform can capture a large number of different cell types. The sectorial approach allows for fast and straightforward modification to sort complex samples as different cell types are captured in different sectors and therefore removes the need for individual output channels per cell type. Experimental results obtained with a mixed sample of benign (MCF-10A) and malignant (MDA-MB-231) breast cells showed a target to nontarget sorting accuracy of over 95%. We envision that the high accuracy of our platform, in addition to its versatility and simplicity, will aid clinical environments where reliable sorting of varying complex samples is essential.
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Affiliation(s)
- Lukas Menze
- Department of Electrical and Computer Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada
| | - Pedro A Duarte
- Department of Electrical and Computer Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada
| | - Lacey Haddon
- Department of Oncology, University of Alberta, Edmonton, Alberta T6G 1H9, Canada
| | - Michael Chu
- Department of Oncology, University of Alberta, Edmonton, Alberta T6G 1H9, Canada
| | - Jie Chen
- Department of Electrical and Computer Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada
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6
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Duarte P, Menze L, Shoute L, Zeng J, Savchenko O, Lyu J, Chen J. Highly Efficient Capture and Quantification of the Airborne Fungal Pathogen Sclerotinia sclerotiorum Employing a Nanoelectrode-Activated Microwell Array. ACS OMEGA 2022; 7:459-468. [PMID: 35036715 PMCID: PMC8756577 DOI: 10.1021/acsomega.1c04878] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2021] [Accepted: 10/15/2021] [Indexed: 06/01/2023]
Abstract
In this study, we present a microdevice for the capture and quantification of Sclerotinia sclerotiorum spores, pathogenic agents of one of the most harmful infectious diseases of crops, Sclerotinia stem rot. The early prognosis of an outbreak is critical to avoid severe economic losses and can be achieved by the detection of a small number of airborne spores. However, the current lack of simple and effective methods to quantify fungal airborne pathogens has hindered the development of an accurate early warning system. We developed a device that remedies these limitations based on a microfluidic design that contains a nanothick aluminum electrode structure integrated with a picoliter well array for dielectrophoresis-driven capture of spores and on-chip quantitative detection employing impedimetric sensing. Based on experimental results, we demonstrated a highly efficient spore trapping rate of more than 90% with an effective impedimetric sensing method that allowed the spore quantification of each column in the array and achieved a sensitivity of 2%/spore at 5 kHz and 1.6%/spore at 20 kHz, enabling single spore detection. We envision that our device will contribute to the development of a low-cost microfluidic platform that could be integrated into an infectious plant disease forecasting tool for crop protection.
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Affiliation(s)
- Pedro
A. Duarte
- Department
of Electrical and Computer Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada
| | - Lukas Menze
- Department
of Electrical and Computer Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada
| | - Lian Shoute
- Department
of Electrical and Computer Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada
| | - Jie Zeng
- Department
of Electrical and Computer Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada
| | - Oleksandra Savchenko
- Department
of Electrical and Computer Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada
| | - Jingwei Lyu
- School
of Physics and Electronic Engineering, Northeast
Petroleum University, Daqing 163318, P. R. China
| | - Jie Chen
- Department
of Electrical and Computer Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada
- Department
of Biomedical Engineering, University of
Alberta, Edmonton, Alberta T6G 2V2, Canada
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7
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Cawley JL, Blauch ME, Collins SM, Nice JB, Xie Q, Jordan LR, Brown AC, Wittenberg NJ. Nanoarrays of Individual Liposomes and Bacterial Outer Membrane Vesicles by Liftoff Nanocontact Printing. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2021; 17:e2103338. [PMID: 34655160 PMCID: PMC8678320 DOI: 10.1002/smll.202103338] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2021] [Revised: 08/27/2021] [Indexed: 06/13/2023]
Abstract
Analytical characterization of small biological particles, such as extracellular vesicles (EVs), is complicated by their extreme heterogeneity in size, lipid, membrane protein, and cargo composition. Analysis of individual particles is essential for illuminating particle property distributions that are obscured by ensemble measurements. To enable high-throughput analysis of individual particles, liftoff nanocontact printing (LNCP) is used to define hexagonal antibody and toxin arrays that have a 425 nm dot size, on average, and 700 nm periodicity. The LNCP process is rapid, simple, and does not require access to specialized nanofabrication tools. These densely packed, highly ordered arrays are used to capture liposomes and bacterial outer membrane vesicles on the basis of their surface biomarkers, with a maximum of one particle per array dot, resulting in densely packed arrays of particles. Despite the high particle density, the underlying antibody or toxin array ensured that neighboring individual particles are optically resolvable. Provided target particle biomarkers and suitable capture molecules are identified, this approach can be used to generate high density arrays of a wide variety of small biological particles, including other types of EVs like exosomes.
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Affiliation(s)
- Jennie L Cawley
- Department of Chemistry, Lehigh University, 6 E Packer Ave, Bethlehem, PA, 18015, USA
| | - Megan E Blauch
- Department of Chemistry, Lehigh University, 6 E Packer Ave, Bethlehem, PA, 18015, USA
| | - Shannon M Collins
- Department of Chemical and Biomolecular Engineering, Lehigh University, 111 Research Drive, Bethlehem, PA, 18015, USA
| | - Justin B Nice
- Department of Chemical and Biomolecular Engineering, Lehigh University, 111 Research Drive, Bethlehem, PA, 18015, USA
| | - Qing Xie
- Department of Chemistry, Lehigh University, 6 E Packer Ave, Bethlehem, PA, 18015, USA
| | - Luke R Jordan
- Department of Chemistry, Lehigh University, 6 E Packer Ave, Bethlehem, PA, 18015, USA
| | - Angela C Brown
- Department of Chemical and Biomolecular Engineering, Lehigh University, 111 Research Drive, Bethlehem, PA, 18015, USA
| | - Nathan J Wittenberg
- Department of Chemistry, Lehigh University, 6 E Packer Ave, Bethlehem, PA, 18015, USA
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8
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Nanophotonic biosensors harnessing van der Waals materials. Nat Commun 2021; 12:3824. [PMID: 34158483 PMCID: PMC8219843 DOI: 10.1038/s41467-021-23564-4] [Citation(s) in RCA: 52] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Accepted: 04/16/2021] [Indexed: 02/07/2023] Open
Abstract
Low-dimensional van der Waals (vdW) materials can harness tightly confined polaritonic waves to deliver unique advantages for nanophotonic biosensing. The reduced dimensionality of vdW materials, as in the case of two-dimensional graphene, can greatly enhance plasmonic field confinement, boosting sensitivity and efficiency compared to conventional nanophotonic devices that rely on surface plasmon resonance in metallic films. Furthermore, the reduction of dielectric screening in vdW materials enables electrostatic tunability of different polariton modes, including plasmons, excitons, and phonons. One-dimensional vdW materials, particularly single-walled carbon nanotubes, possess unique form factors with confined excitons to enable single-molecule detection as well as in vivo biosensing. We discuss basic sensing principles based on vdW materials, followed by technological challenges such as surface chemistry, integration, and toxicity. Finally, we highlight progress in harnessing vdW materials to demonstrate new sensing functionalities that are difficult to perform with conventional metal/dielectric sensors. This review presents an overview of scenarios where van der Waals (vdW) materials provide unique advantages for nanophotonic biosensing applications. The authors discuss basic sensing principles based on vdW materials, advantages of the reduced dimensionality as well as technological challenges.
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9
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Nanogap dielectrophoresis combined with buffer exchange for detecting protein binding to trapped bioparticles. Colloids Surf A Physicochem Eng Asp 2021. [DOI: 10.1016/j.colsurfa.2020.125829] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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10
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Van Gool A, Corrales F, Čolović M, Krstić D, Oliver-Martos B, Martínez-Cáceres E, Jakasa I, Gajski G, Brun V, Kyriacou K, Burzynska-Pedziwiatr I, Wozniak LA, Nierkens S, Pascual García C, Katrlik J, Bojic-Trbojevic Z, Vacek J, Llorente A, Antohe F, Suica V, Suarez G, t'Kindt R, Martin P, Penque D, Martins IL, Bodoki E, Iacob BC, Aydindogan E, Timur S, Allinson J, Sutton C, Luider T, Wittfooth S, Sammar M. Analytical techniques for multiplex analysis of protein biomarkers. Expert Rev Proteomics 2020; 17:257-273. [PMID: 32427033 DOI: 10.1080/14789450.2020.1763174] [Citation(s) in RCA: 47] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
INTRODUCTION The importance of biomarkers for pharmaceutical drug development and clinical diagnostics is more significant than ever in the current shift toward personalized medicine. Biomarkers have taken a central position either as companion markers to support drug development and patient selection, or as indicators aiming to detect the earliest perturbations indicative of disease, minimizing therapeutic intervention or even enabling disease reversal. Protein biomarkers are of particular interest given their central role in biochemical pathways. Hence, capabilities to analyze multiple protein biomarkers in one assay are highly interesting for biomedical research. AREAS COVERED We here review multiple methods that are suitable for robust, high throughput, standardized, and affordable analysis of protein biomarkers in a multiplex format. We describe innovative developments in immunoassays, the vanguard of methods in clinical laboratories, and mass spectrometry, increasingly implemented for protein biomarker analysis. Moreover, emerging techniques are discussed with potentially improved protein capture, separation, and detection that will further boost multiplex analyses. EXPERT COMMENTARY The development of clinically applied multiplex protein biomarker assays is essential as multi-protein signatures provide more comprehensive information about biological systems than single biomarkers, leading to improved insights in mechanisms of disease, diagnostics, and the effect of personalized medicine.
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Affiliation(s)
- Alain Van Gool
- Translational Metabolic Laboratory, Department of Laboratory Medicine, Radboud Institute of Molecular Life Sciences, Radboud University Medical Center , Nijmegen, The Netherlands
| | - Fernado Corrales
- Functional Proteomics Laboratory, Centro Nacional De Biotecnología , Madrid, Spain
| | - Mirjana Čolović
- Department of Physical Chemistry, "Vinča" Institute of Nuclear Sciences, University of Belgrade , Belgrade, Serbia
| | - Danijela Krstić
- Institute of Medical Chemistry, Faculty of Medicine, University of Belgrade , Belgrade, Serbia
| | - Begona Oliver-Martos
- Neuroimmunology and Neuroinflammation Group. Instituto De Investigación Biomédica De Málaga-IBIMA. UGC Neurociencias, Hospital Regional Universitario De Málaga , Malaga, Spain
| | - Eva Martínez-Cáceres
- Immunology Division, LCMN, Germans Trias I Pujol University Hospital and Research Institute, Campus Can Ruti, Badalona, and Department of Cellular Biology, Physiology and Immunology, Universitat Autònoma De Barcelona , Cerdanyola Del Vallès, Spain
| | - Ivone Jakasa
- Laboratory for Analytical Chemistry, Department of Chemistry and Biochemistry, Faculty of Food Technology and Biotechnology, University of Zagreb , Zagreb, Croatia
| | - Goran Gajski
- Mutagenesis Unit, Institute for Medical Research and Occupational Health , Zagreb, Croatia
| | - Virginie Brun
- Université Grenoble Alpes, CEA, Inserm, IRIG, BGE , Grenoble, France
| | - Kyriacos Kyriacou
- Department of Electron Microscopy/Molecular Biology, The Cyprus School of Molecular Medicine/The Cyprus Institute of Neurology and Genetics , Nicosia, Cyprus
| | - Izabela Burzynska-Pedziwiatr
- Medical Faculty, Department of Biomedical Sciences, Chair of Medical Biology & Department of Structural Biology, Medical University of Lodz , Łódź, Poland
| | - Lucyna Alicja Wozniak
- Medical Faculty, Department of Biomedical Sciences, Chair of Medical Biology & Department of Structural Biology, Medical University of Lodz , Łódź, Poland
| | - Stephan Nierkens
- Center for Translational Immunology, University Medical Center Utrecht & Princess Máxima Center for Pediatric Oncology , Utrecht, The Netherlands
| | - César Pascual García
- Materials Research and Technology Department, Luxembourg Institute of Science and Technology (LIST) , Belvaux, Luxembourg
| | - Jaroslav Katrlik
- Department of Glycobiotechnology, Institute of Chemistry, Slovak Academy of Sciences , Bratislava, Slovakia
| | - Zanka Bojic-Trbojevic
- Laboratory for Biology of Reproduction, Institute for the Application of Nuclear Energy - INEP, University of Belgrade , Belgrade, Serbia
| | - Jan Vacek
- Department of Medical Chemistry and Biochemistry, Faculty of Medicine and Dentistry, Palacky University , Olomouc, Czech Republic
| | - Alicia Llorente
- Department of Molecular Cell Biology, Institute for Cancer Research, Oslo University Hospital , Oslo, Norway
| | - Felicia Antohe
- Proteomics Department, Institute of Cellular Biology and Pathology "N. Simionescu" of the Romanian Academy , Bucharest, Romania
| | - Viorel Suica
- Proteomics Department, Institute of Cellular Biology and Pathology "N. Simionescu" of the Romanian Academy , Bucharest, Romania
| | - Guillaume Suarez
- Center for Primary Care and Public Health (Unisanté), University of Lausanne , Lausanne, Switzerland
| | - Ruben t'Kindt
- Research Institute for Chromatography (RIC) , Kortrijk, Belgium
| | - Petra Martin
- Department of Medical Oncology, Midland Regional Hospital Tullamore/St. James's Hospital , Dublin, Ireland
| | - Deborah Penque
- Human Genetics Department, Instituto Nacional De Saúde Dr Ricardo Jorge, Lisboa, Portugal and Centre for Toxicogenomics and Human Health, Universidade Nova De Lisboa , Lisbon,Portugal
| | - Ines Lanca Martins
- Human Genetics Department, Instituto Nacional De Saúde Dr Ricardo Jorge, Lisboa, Portugal and Centre for Toxicogenomics and Human Health, Universidade Nova De Lisboa , Lisbon,Portugal
| | - Ede Bodoki
- Analytical Chemistry Department, Faculty of Pharmacy, "Iuliu Hatieganu" University of Medicine and Pharmacy , Cluj-Napoca, Romania
| | - Bogdan-Cezar Iacob
- Analytical Chemistry Department, Faculty of Pharmacy, "Iuliu Hatieganu" University of Medicine and Pharmacy , Cluj-Napoca, Romania
| | - Eda Aydindogan
- Department of Chemistry, Graduate School of Sciences and Engineering, Koç University , Istanbul, Turkey
| | - Suna Timur
- Institute of Natural Sciences, Department of Biochemistry, Ege University , Izmir, Turkey
| | | | | | - Theo Luider
- Department of Neurology, Erasmus MC , Rotterdam, The Netherlands
| | | | - Marei Sammar
- Ephraim Katzir Department of Biotechnology Engineering, ORT Braude College , Karmiel, Israel
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11
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Ertsgaard CT, Wittenberg NJ, Klemme DJ, Barik A, Shih WC, Oh SH. Integrated Nanogap Platform for Sub-Volt Dielectrophoretic Trapping and Real-Time Raman Imaging of Biological Nanoparticles. NANO LETTERS 2018; 18:5946-5953. [PMID: 30071732 DOI: 10.1021/acs.nanolett.8b02654] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
A rapid, label-free, and broadly applicable chemical analysis platform for nanovesicles and subcellular components is highly desirable for diagnostic assays. We demonstrate an integrated nanogap plasmonic sensing platform that combines subvolt dielectrophoresis (DEP) trapping, gold nanoparticles (AuNPs), and a lineated illumination scheme for real-time, surface-enhanced Raman spectroscopy (SERS) imaging of biological nanoparticles. Our system is capable of isolating suspended sub-100 nm vesicles and imaging the Raman spectra of their cargo within seconds, 100 times faster than conventional point-scan Raman systems. Bare AuNPs are spiked into solution and simultaneously trapped with the nanovesicles along the gap to boost local optical fields. In addition, our platform offers simultaneous and delay-free spatial and temporal multiplexing functionality. These nanogap devices can be mass-produced via atomic layer lithography and provide a practical platform for high-speed SERS analysis of biological nanoparticles.
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Affiliation(s)
| | - Nathan J Wittenberg
- Department of Chemistry , Lehigh University , Bethlehem , Pennsylvania 18015 , United States
| | | | | | - Wei-Chuan Shih
- Department of Electrical and Computer Engineering , University of Houston , Houston , Texas 77204 , United States
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12
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Metal enhanced fluorescence (MEF) for biosensors: General approaches and a review of recent developments. Biosens Bioelectron 2018; 111:102-116. [DOI: 10.1016/j.bios.2018.04.007] [Citation(s) in RCA: 209] [Impact Index Per Article: 34.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Revised: 03/27/2018] [Accepted: 04/06/2018] [Indexed: 12/11/2022]
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13
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Lee TH, Hirst DJ, Kulkarni K, Del Borgo MP, Aguilar MI. Exploring Molecular-Biomembrane Interactions with Surface Plasmon Resonance and Dual Polarization Interferometry Technology: Expanding the Spotlight onto Biomembrane Structure. Chem Rev 2018; 118:5392-5487. [PMID: 29793341 DOI: 10.1021/acs.chemrev.7b00729] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
The molecular analysis of biomolecular-membrane interactions is central to understanding most cellular systems but has emerged as a complex technical challenge given the complexities of membrane structure and composition across all living cells. We present a review of the application of surface plasmon resonance and dual polarization interferometry-based biosensors to the study of biomembrane-based systems using both planar mono- or bilayers or liposomes. We first describe the optical principals and instrumentation of surface plasmon resonance, including both linear and extraordinary transmission modes and dual polarization interferometry. We then describe the wide range of model membrane systems that have been developed for deposition on the chips surfaces that include planar, polymer cushioned, tethered bilayers, and liposomes. This is followed by a description of the different chemical immobilization or physisorption techniques. The application of this broad range of engineered membrane surfaces to biomolecular-membrane interactions is then overviewed and how the information obtained using these techniques enhance our molecular understanding of membrane-mediated peptide and protein function. We first discuss experiments where SPR alone has been used to characterize membrane binding and describe how these studies yielded novel insight into the molecular events associated with membrane interactions and how they provided a significant impetus to more recent studies that focus on coincident membrane structure changes during binding of peptides and proteins. We then discuss the emerging limitations of not monitoring the effects on membrane structure and how SPR data can be combined with DPI to provide significant new information on how a membrane responds to the binding of peptides and proteins.
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Affiliation(s)
- Tzong-Hsien Lee
- Department of Biochemistry and Molecular Biology and Biomedicine Discovery Institute , Monash University , Clayton , VIC 3800 , Australia
| | - Daniel J Hirst
- Department of Biochemistry and Molecular Biology and Biomedicine Discovery Institute , Monash University , Clayton , VIC 3800 , Australia
| | - Ketav Kulkarni
- Department of Biochemistry and Molecular Biology and Biomedicine Discovery Institute , Monash University , Clayton , VIC 3800 , Australia
| | - Mark P Del Borgo
- Department of Biochemistry and Molecular Biology and Biomedicine Discovery Institute , Monash University , Clayton , VIC 3800 , Australia
| | - Marie-Isabel Aguilar
- Department of Biochemistry and Molecular Biology and Biomedicine Discovery Institute , Monash University , Clayton , VIC 3800 , Australia
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14
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Jackman JA, Rahim Ferhan A, Cho NJ. Nanoplasmonic sensors for biointerfacial science. Chem Soc Rev 2018; 46:3615-3660. [PMID: 28383083 DOI: 10.1039/c6cs00494f] [Citation(s) in RCA: 130] [Impact Index Per Article: 21.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
In recent years, nanoplasmonic sensors have become widely used for the label-free detection of biomolecules across medical, biotechnology, and environmental science applications. To date, many nanoplasmonic sensing strategies have been developed with outstanding measurement capabilities, enabling detection down to the single-molecule level. One of the most promising directions has been surface-based nanoplasmonic sensors, and the potential of such technologies is still emerging. Going beyond detection, surface-based nanoplasmonic sensors open the door to enhanced, quantitative measurement capabilities across the biointerfacial sciences by taking advantage of high surface sensitivity that pairs well with the size of medically important biomacromolecules and biological particulates such as viruses and exosomes. The goal of this review is to introduce the latest advances in nanoplasmonic sensors for the biointerfacial sciences, including ongoing development of nanoparticle and nanohole arrays for exploring different classes of biomacromolecules interacting at solid-liquid interfaces. The measurement principles for nanoplasmonic sensors based on utilizing the localized surface plasmon resonance (LSPR) and extraordinary optical transmission (EOT) phenomena are first introduced. The following sections are then categorized around different themes within the biointerfacial sciences, specifically protein binding and conformational changes, lipid membrane fabrication, membrane-protein interactions, exosome and virus detection and analysis, and probing nucleic acid conformations and binding interactions. Across these themes, we discuss the growing trend to utilize nanoplasmonic sensors for advanced measurement capabilities, including positional sensing, biomacromolecular conformation analysis, and real-time kinetic monitoring of complex biological interactions. Altogether, these advances highlight the rich potential of nanoplasmonic sensors and the future growth prospects of the community as a whole. With ongoing development of commercial nanoplasmonic sensors and analytical models to interpret corresponding measurement data in the context of biologically relevant interactions, there is significant opportunity to utilize nanoplasmonic sensing strategies for not only fundamental biointerfacial science, but also translational science applications related to clinical medicine and pharmaceutical drug development among countless possibilities.
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Affiliation(s)
- Joshua A Jackman
- School of Materials Science and Engineering, Nanyang Technological University, Singapore, 639798, Singapore.
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15
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Chen X, Tieleman DP, Liang Q. Modulating interactions between ligand-coated nanoparticles and phase-separated lipid bilayers by varying the ligand density and the surface charge. NANOSCALE 2018; 10:2481-2491. [PMID: 29340405 DOI: 10.1039/c7nr06494b] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The interactions between nanoparticles and lipid bilayers are critical in applications of nanoparticles in nanomedicine, cell imaging, toxicology, and elsewhere. Here, we investigate the interactions between nanoparticles coated with neutral and/or charged ligands and phase-separated lipid bilayers using coarse-grained molecular dynamics simulation. Both penetration and adsorption processes as well as the final distribution of the nanoparticles can be readily modulated by varying the ligand density and the surface charge of the nanoparticles. Completely hydrophobic (neutral) nanoparticles with larger size initially preferentially penetrate into the liquid-disordered region of the lipid bilayer and finally transfer into the liquid-ordered region; partially hydrophilic nanoparticles with low or moderate surface charge tend to either distribute in the liquid-disordered region or be adsorbed on the surface of the lipid bilayer, while strongly hydrophilic nanoparticles with high surface charge always reside on the surface of the lipid bilayer. Interactions of the nanoparticles with the lipid bilayers are affected by the surface charge of nanoparticles, hydrophobic mismatch, bending of the ligands, and the packing state of the lipids. Insight in these factors can be used to improve the efficiency of designing nanoparticles for specific applications.
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Affiliation(s)
- Xiaojie Chen
- Center for Statistical and Theoretical Condensed Matter Physics and Department of Physics, Zhejiang Normal University, Jinhua 321004, P. R. China.
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16
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Ferhan AR, Ma GJ, Jackman JA, Sut TN, Park JH, Cho NJ. Probing the Interaction of Dielectric Nanoparticles with Supported Lipid Membrane Coatings on Nanoplasmonic Arrays. SENSORS (BASEL, SWITZERLAND) 2017; 17:E1484. [PMID: 28644423 PMCID: PMC5539686 DOI: 10.3390/s17071484] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/31/2017] [Revised: 06/20/2017] [Accepted: 06/20/2017] [Indexed: 12/16/2022]
Abstract
The integration of supported lipid membranes with surface-based nanoplasmonic arrays provides a powerful sensing approach to investigate biointerfacial phenomena at membrane interfaces. While a growing number of lipid vesicles, protein, and nucleic acid systems have been explored with nanoplasmonic sensors, there has been only very limited investigation of the interactions between solution-phase nanomaterials and supported lipid membranes. Herein, we established a surface-based localized surface plasmon resonance (LSPR) sensing platform for probing the interaction of dielectric nanoparticles with supported lipid bilayer (SLB)-coated, plasmonic nanodisk arrays. A key emphasis was placed on controlling membrane functionality by tuning the membrane surface charge vis-à-vis lipid composition. The optical sensing properties of the bare and SLB-coated sensor surfaces were quantitatively compared, and provided an experimental approach to evaluate nanoparticle-membrane interactions across different SLB platforms. While the interaction of negatively-charged silica nanoparticles (SiNPs) with a zwitterionic SLB resulted in monotonic adsorption, a stronger interaction with a positively-charged SLB resulted in adsorption and lipid transfer from the SLB to the SiNP surface, in turn influencing the LSPR measurement responses based on the changing spatial proximity of transferred lipids relative to the sensor surface. Precoating SiNPs with bovine serum albumin (BSA) suppressed lipid transfer, resulting in monotonic adsorption onto both zwitterionic and positively-charged SLBs. Collectively, our findings contribute a quantitative understanding of how supported lipid membrane coatings influence the sensing performance of nanoplasmonic arrays, and demonstrate how the high surface sensitivity of nanoplasmonic sensors is well-suited for detecting the complex interactions between nanoparticles and lipid membranes.
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Affiliation(s)
- Abdul Rahim Ferhan
- School of Materials Science and Engineering and Centre for Biomimetic Sensor Science, Nanyang Technological University, 50 Nanyang Drive, Singapore 637553, Singapore.
| | - Gamaliel Junren Ma
- School of Materials Science and Engineering and Centre for Biomimetic Sensor Science, Nanyang Technological University, 50 Nanyang Drive, Singapore 637553, Singapore.
| | - Joshua A Jackman
- School of Materials Science and Engineering and Centre for Biomimetic Sensor Science, Nanyang Technological University, 50 Nanyang Drive, Singapore 637553, Singapore.
| | - Tun Naw Sut
- School of Materials Science and Engineering and Centre for Biomimetic Sensor Science, Nanyang Technological University, 50 Nanyang Drive, Singapore 637553, Singapore.
| | - Jae Hyeon Park
- School of Materials Science and Engineering and Centre for Biomimetic Sensor Science, Nanyang Technological University, 50 Nanyang Drive, Singapore 637553, Singapore.
| | - Nam-Joon Cho
- School of Materials Science and Engineering and Centre for Biomimetic Sensor Science, Nanyang Technological University, 50 Nanyang Drive, Singapore 637553, Singapore.
- School of Chemical and Biomedical Engineering, Nanyang Technological University, 62 Nanyang Drive, Singapore 637459, Singapore.
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17
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Kumar S, Wolken GG, Wittenberg NJ, Arriaga EA, Oh SH. Nanohole Array-Directed Trapping of Mammalian Mitochondria Enabling Single Organelle Analysis. Anal Chem 2015; 87:11973-7. [PMID: 26593329 PMCID: PMC4809531 DOI: 10.1021/acs.analchem.5b03604] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
We present periodic nanohole arrays fabricated in free-standing metal-coated nitride films as a platform for trapping and analyzing single organelles. When a microliter-scale droplet containing mitochondria is dispensed above the nanohole array, the combination of evaporation and capillary flow directs individual mitochondria to the nanoholes. Mammalian mitochondria arrays were rapidly formed on chip using this technique without any surface modification steps, microfluidic interconnects, or external power sources. The trapped mitochondria were depolarized on chip using an ionophore with results showing that the organelle viability and behavior were preserved during the on-chip assembly process. Fluorescence signal related to mitochondrial membrane potential was obtained from single mitochondria trapped in individual nanoholes revealing statistical differences between the behavior of polarized vs depolarized mammalian mitochondria. This technique provides a fast and stable route for droplet-based directed localization of organelles-on-a-chip with minimal limitations and complexity, as well as promotes integration with other optical or electrochemical detection techniques.
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Affiliation(s)
- Shailabh Kumar
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN 55455, United States
- Department of Biomedical Engineering, University of Minnesota, Minneapolis, MN 55455, United States
| | - Gregory G. Wolken
- Department of Chemistry, University of Minnesota, Minneapolis, MN 55455, United States
| | - Nathan J. Wittenberg
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN 55455, United States
| | - Edgar A. Arriaga
- Department of Biomedical Engineering, University of Minnesota, Minneapolis, MN 55455, United States
- Department of Chemistry, University of Minnesota, Minneapolis, MN 55455, United States
| | - Sang-Hyun Oh
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN 55455, United States
- Department of Biomedical Engineering, University of Minnesota, Minneapolis, MN 55455, United States
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18
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Sanmartí-Espinal M, Galve R, Iavicoli P, Persuy MA, Pajot-Augy E, Marco MP, Samitier J. Immunochemical strategy for quantification of G-coupled olfactory receptor proteins on natural nanovesicles. Colloids Surf B Biointerfaces 2015; 139:269-76. [PMID: 26724468 DOI: 10.1016/j.colsurfb.2015.11.062] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2015] [Revised: 10/06/2015] [Accepted: 11/23/2015] [Indexed: 02/01/2023]
Abstract
Cell membrane proteins are involved in a variety of biochemical pathways and therefore constitute important targets for therapy and development of new drugs. Bioanalytical platforms and binding assays using these membrane protein receptors for drug screening or diagnostic require the construction of well-characterized liposome and lipid bilayer arrays that act as support to prevent protein denaturation during biochip processing. Quantification of the protein receptors in the lipid membrane arrays is a key issue in order to produce reproducible and well-characterized chips. Herein, we report a novel immunochemical analytical approach for the quantification of membrane proteins (i.e., G-protein-coupled receptor, GPCR) in nanovesicles (NVs). The procedure allows direct determination of tagged receptors (i.e., c-myc tag) without any previous protein purification or extraction steps. The immunochemical method is based on a microplate ELISA format and quantifies this tag on proteins embedded in NVs with detectability in the picomolar range, using protein bioconjugates as reference standards. The applicability of the method is demonstrated through the quantification of the c-myc-olfactory receptor (OR, c-myc-OR1740) in the cell membrane NVs. The reported method opens the possibility to develop well-characterized drug-screening platforms based on G-coupled proteins embedded on membranes.
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Affiliation(s)
- Marta Sanmartí-Espinal
- IBEC-Institute for Bioengineering of Catalonia, Nanobioengineering Group, C/Baldiri Reixac, 15-21, 08028 Barcelona, Spain; Department of Electronics, University of Barcelona, C/Martí i Franquès 1, 08028 Barcelona, Spain.
| | - Roger Galve
- Nb4D-Nanobiotechnology for Diagnostics, IQAC-CSIC, C/Jordi Girona, 18-26, 08034 Barcelona, Spain; Centro de Investigación Biomédica en Red en Bioingeniería Biomateriales y Nanomedicina (CIBER-BBN), C/María de Luna 11, Edificio CEEI, 50018 Zaragoza, Spain
| | - Patrizia Iavicoli
- IBEC-Institute for Bioengineering of Catalonia, Nanobioengineering Group, C/Baldiri Reixac, 15-21, 08028 Barcelona, Spain
| | | | | | - M-Pilar Marco
- Nb4D-Nanobiotechnology for Diagnostics, IQAC-CSIC, C/Jordi Girona, 18-26, 08034 Barcelona, Spain; Centro de Investigación Biomédica en Red en Bioingeniería Biomateriales y Nanomedicina (CIBER-BBN), C/María de Luna 11, Edificio CEEI, 50018 Zaragoza, Spain
| | - Josep Samitier
- IBEC-Institute for Bioengineering of Catalonia, Nanobioengineering Group, C/Baldiri Reixac, 15-21, 08028 Barcelona, Spain; Department of Electronics, University of Barcelona, C/Martí i Franquès 1, 08028 Barcelona, Spain; Centro de Investigación Biomédica en Red en Bioingeniería Biomateriales y Nanomedicina (CIBER-BBN), C/María de Luna 11, Edificio CEEI, 50018 Zaragoza, Spain.
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19
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Tu L, Huang L, Wang T, Wang W. Study of flow rate induced measurement error in flow-through nano-hole plasmonic sensor. BIOMICROFLUIDICS 2015; 9:064111. [PMID: 26649131 PMCID: PMC4662672 DOI: 10.1063/1.4936863] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2015] [Accepted: 11/18/2015] [Indexed: 05/08/2023]
Abstract
Flow-through gold film perforated with periodically arrayed sub-wavelength nano-holes can cause extraordinary optical transmission (EOT), which has recently emerged as a label-free surface plasmon resonance sensor in biochemical detection by measuring the transmission spectral shift. This paper describes a systematic study of the effect of microfluidic field on the spectrum of EOT associated with the porous gold film. To detect biochemical molecules, the sub-micron-thick film is free-standing in a microfluidic field and thus subject to hydrodynamic deformation. The film deformation alone may cause spectral shift as measurement error, which is coupled with the spectral shift as real signal associated with the molecules. However, this microfluid-induced measurement error has long been overlooked in the field and needs to be identified in order to improve the measurement accuracy. Therefore, we have conducted simulation and analytic analysis to investigate how the microfluidic flow rate affects the EOT spectrum and verified the effect through experiment with a sandwiched device combining Au/Cr/Si3N4 nano-hole film and polydimethylsiloxane microchannels. We found significant spectral blue shift associated with even small flow rates, for example, 12.60 nm for 4.2 μl/min. This measurement error corresponds to 90 times the optical resolution of the current state-of-the-art commercially available spectrometer or 8400 times the limit of detection. This really severe measurement error suggests that we should pay attention to the microfluidic parameter setting for EOT-based flow-through nano-hole sensors and adopt right scheme to improve the measurement accuracy.
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Affiliation(s)
- Long Tu
- State Key Laboratory of Precision Measurement Technology and Instrument, Department of Precision Instrument, Tsinghua University , Beijing, China
| | - Liang Huang
- State Key Laboratory of Precision Measurement Technology and Instrument, Department of Precision Instrument, Tsinghua University , Beijing, China
| | - Tianyi Wang
- State Key Laboratory of Precision Measurement Technology and Instrument, Department of Precision Instrument, Tsinghua University , Beijing, China
| | - Wenhui Wang
- State Key Laboratory of Precision Measurement Technology and Instrument, Department of Precision Instrument, Tsinghua University , Beijing, China
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20
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González-Henríquez CM, Sarabia-Vallejos MA. Electrospinning deposition of hydrogel fibers used as scaffold for biomembranes. Thermal stability of DPPC corroborated by ellipsometry. Chem Phys Lipids 2015. [PMID: 26206414 DOI: 10.1016/j.chemphyslip.2015.07.004] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
DPPC bilayers were deposited over thin hydrogel scaffolds using the Langmuir-Blodgett technique (with DPPC thickness ∼ 6.2 nm). Wrinkled hydrogels films were used to maintain a moist environment in order to enhance DPPC bilayer stability. Polymer mixtures were prepared using HEMA (as a base monomer) and DEGDMA, PEGDA575, PEGDA700 or AAm (as crosslinking agents); a thermal initiator was added to obtain a final pre-hydrogel (oligomer) with an adequate viscosity for thin film formation. This mixture was deposited as wrinkled film/fibers over hydrophilic silicon wafers using an electrospinning technique. Later, these samples were exposed to UV light to trigger photopolymerization, generating crosslinking bonds between hydrogel chains; this process also generated remnant surface stresses in the films that favored wrinkle formation. In the cases where DEGDMA and AAm were used as crosslinking agents, HEMA was added in higher amounts. The resultant polymer film surface showed homogenous layering with some small isolated clusters. If PEGDA575/700 was used as the crosslinking agent, we observed the formation of polymer wrinkled thin films, composed by main and secondary chains (with different dimensions). Moreover, water absorption and release was found to be mediated through surface morphology, ordering and film thickness. The thermal behavior of biomembranes was examined using ellipsometry techniques under controlled heating cycles, allowing phases and phase transitions to be detected through slight thickness variations with respect to temperature. Atomic force microscopy was used to determinate surface roughness changes according to temperature variation, temperature was varied sufficiently for the detection and recording of DPPC phase limits. Contact angle measurements corroborated and quantified system wettability, supporting the theory that wrinkled hydrogel films act to enhance DPPC bilayer stability during thermal cycles.
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Affiliation(s)
- C M González-Henríquez
- Departamento de Química, Universidad Tecnológica Metropolitana, Las Palmeras #3360, Santiago, Chile.
| | - M A Sarabia-Vallejos
- Instituto de Física, Pontificia Universidad Católica de Chile, Avda. Vicuña Mackenna #4860, Santiago, Chile
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21
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Spycher PR, Hall H, Vogel V, Reimhult E. Patterning of supported lipid bilayers and proteins using material selective nitrodopamine-mPEG. Biomater Sci 2015. [DOI: 10.1039/c4bm00090k] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
We present a generic patterning process by which biomolecules in a passivated background are patterned directly from physiological buffer to microfabricated surfaces without the need for further processing.
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Affiliation(s)
- Philipp R. Spycher
- Laboratory of Applied Mechanobiology
- Department of Health Sciences and Technology
- ETH Zurich
- Switzerland
| | - Heike Hall
- Laboratory of Applied Mechanobiology
- Department of Health Sciences and Technology
- ETH Zurich
- Switzerland
| | - Viola Vogel
- Laboratory of Applied Mechanobiology
- Department of Health Sciences and Technology
- ETH Zurich
- Switzerland
| | - Erik Reimhult
- Laboratory for Surface Science and Technology
- Department of Materials
- ETH Zurich
- Switzerland
- Institute for Biologically Inspired Materials
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22
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Zhang Z, Yu L, Xu L, Hu X, Li P, Zhang Q, Ding X, Feng X. Biotoxin sensing in food and environment via microchip. Electrophoresis 2014; 35:1547-59. [DOI: 10.1002/elps.201300570] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2013] [Revised: 02/21/2014] [Accepted: 03/20/2014] [Indexed: 12/23/2022]
Affiliation(s)
- Zhaowei Zhang
- Oil Crops Research Institute; Chinese Academy of Agricultural Sciences; Wuhan China
- Key Laboratory of Biology and Genetic Improvement of Oil Crops; Ministry of Agriculture; Wuhan China
| | - Li Yu
- Oil Crops Research Institute; Chinese Academy of Agricultural Sciences; Wuhan China
- Laboratory of Risk Assessment for Oilseeds Products (Wuhan); Ministry of Agriculture; Wuhan China
| | - Lin Xu
- Oil Crops Research Institute; Chinese Academy of Agricultural Sciences; Wuhan China
- Quality Inspection and Test Center for Oilseeds Products; Ministry of Agriculture; Wuhan China
| | - Xiaofeng Hu
- Oil Crops Research Institute; Chinese Academy of Agricultural Sciences; Wuhan China
- Key Laboratory of Detection for Mycotoxins; Ministry of Agriculture; Wuhan China
| | - Peiwu Li
- Oil Crops Research Institute; Chinese Academy of Agricultural Sciences; Wuhan China
- Key Laboratory of Biology and Genetic Improvement of Oil Crops; Ministry of Agriculture; Wuhan China
- Laboratory of Risk Assessment for Oilseeds Products (Wuhan); Ministry of Agriculture; Wuhan China
- Quality Inspection and Test Center for Oilseeds Products; Ministry of Agriculture; Wuhan China
- Key Laboratory of Detection for Mycotoxins; Ministry of Agriculture; Wuhan China
| | - Qi Zhang
- Oil Crops Research Institute; Chinese Academy of Agricultural Sciences; Wuhan China
- Key Laboratory of Biology and Genetic Improvement of Oil Crops; Ministry of Agriculture; Wuhan China
| | - Xiaoxia Ding
- Key Laboratory of Biology and Genetic Improvement of Oil Crops; Ministry of Agriculture; Wuhan China
- Laboratory of Risk Assessment for Oilseeds Products (Wuhan); Ministry of Agriculture; Wuhan China
| | - Xiaojun Feng
- Britton Chance Center for Biomedical Photonics at Wuhan National Laboratory for Optoelectronics-Hubei Bioinformatics and Molecular Imaging Key Laboratory; Systems Biology Theme, Department of Biomedical Engineering, College of Life Science and Technology; Huazhong University of Science and Technology; Wuhan China
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23
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Junesch J, Sannomiya T. Ultrathin suspended nanopores with surface plasmon resonance fabricated by combined colloidal lithography and film transfer. ACS APPLIED MATERIALS & INTERFACES 2014; 6:6322-31. [PMID: 24701958 DOI: 10.1021/am405443y] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Suspended plasmonic nanopores in ultrathin film layers were fabricated through a simple and widely applicable method combining colloidal lithography and thin film transfer, which allows mass production of short-range ordered nanopore arrays on a large scale. By this combined method, mechanically stable and flexible free-standing nanopore membranes with a thickness down to 15-30 nm were produced. The plasmon resonances of the ultrathin plasmonic nanopores fabricated in AlN/Au/AlN trilayer and single layer Au membranes were tuned to lie in the vis-NIR wavelength range by properly designing their dimensions. The optical responses to the refractive index changes were tested and applied to adlayer sensing. The trilayer nanopore membrane showed a unique property to support water only on one side of the membrane, which was confirmed by the resonance shift and comparison with numerical simulation. Pore size reduction down to 10 nm can be achieved through additional material deposition. The filtering function of such pore-size-reduced conical shaped nanofunnels has also been demonstrated. The presented nanopore fabrication method offers new platforms for ultrathin nanopore sensing or filtering devices with controlled pore-size and optical properties. The film transfer technique employed in this work would enable the transformation of any substrate-based nanostructures to free-standing membrane based devices without complicated multiple etching processes.
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Affiliation(s)
- Juliane Junesch
- Institute of Biomedical Engineering, ETH Zürich , Gloriastrasse 35, 8092, Zürich, Switzerland
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24
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Wittenberg NJ, Johnson TW, Jordan LR, Xu X, Warrington AE, Rodriguez M, Oh SH. Formation of biomembrane microarrays with a squeegee-based assembly method. J Vis Exp 2014:51501. [PMID: 24837169 PMCID: PMC4032179 DOI: 10.3791/51501] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Abstract
Lipid bilayer membranes form the plasma membranes of cells and define the boundaries of subcellular organelles. In nature, these membranes are heterogeneous mixtures of many types of lipids, contain membrane-bound proteins and are decorated with carbohydrates. In some experiments, it is desirable to decouple the biophysical or biochemical properties of the lipid bilayer from those of the natural membrane. Such cases call for the use of model systems such as giant vesicles, liposomes or supported lipid bilayers (SLBs). Arrays of SLBs are particularly attractive for sensing applications and mimicking cell-cell interactions. Here we describe a new method for forming SLB arrays. Submicron-diameter SiO2 beads are first coated with lipid bilayers to form spherical SLBs (SSLBs). The beads are then deposited into an array of micro-fabricated submicron-diameter microwells. The preparation technique uses a "squeegee" to clean the substrate surface, while leaving behind SSLBs that have settled into microwells. This method requires no chemical modification of the microwell substrate, nor any particular targeting ligands on the SSLB. Microwells are occupied by single beads because the well diameter is tuned to be just larger than the bead diameter. Typically, more 75% of the wells are occupied, while the rest remain empty. In buffer SSLB arrays display long-term stability of greater than one week. Multiple types of SSLBs can be placed in a single array by serial deposition, and the arrays can be used for sensing, which we demonstrate by characterizing the interaction of cholera toxin with ganglioside GM1. We also show that phospholipid vesicles without the bead supports and biomembranes from cellular sources can be arrayed with the same method and cell-specific membrane lipids can be identified.
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Affiliation(s)
| | - Timothy W Johnson
- Department of Electrical and Computer Engineering, University of Minnesota
| | - Luke R Jordan
- Department of Biomedical Engineering, University of Minnesota
| | - Xiaohua Xu
- Department of Neurology, Mayo Clinic College of Medicine
| | | | - Moses Rodriguez
- Department of Neurology, Mayo Clinic College of Medicine; Department of Immunology, Mayo Clinic College of Medicine
| | - Sang-Hyun Oh
- Department of Electrical and Computer Engineering, University of Minnesota; Department of Biomedical Engineering, University of Minnesota
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25
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Wittenberg NJ, Wootla B, Jordan LR, Denic A, Warrington AE, Oh SH, Rodriguez M. Applications of SPR for the characterization of molecules important in the pathogenesis and treatment of neurodegenerative diseases. Expert Rev Neurother 2014; 14:449-63. [PMID: 24625008 PMCID: PMC3989105 DOI: 10.1586/14737175.2014.896199] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Characterization of binding kinetics and affinity between a potential drug and its receptor are key steps in the development of new drugs. Among the techniques available to determine binding affinities, surface plasmon resonance has emerged as the gold standard because it can measure binding and dissociation rates in real-time in a label-free fashion. Surface plasmon resonance is now finding applications in the characterization of molecules for treatment of neurodegenerative diseases, characterization of molecules associated with pathogenesis of neurodegenerative diseases and detection of neurodegenerative disease biomarkers. In addition it has been used in the characterization of a new class of natural autoantibodies that have therapeutic potential in a number of neurologic diseases. In this review we will introduce surface plasmon resonance and describe some applications of the technique that pertain to neurodegenerative disorders and their treatment.
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Affiliation(s)
- Nathan J. Wittenberg
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN USA
| | - Bharath Wootla
- Department of Neurology, Mayo Clinic College of Medicine, Rochester, MN USA
| | - Luke R. Jordan
- Department of Biomedical Engineering, University of Minnesota, Minneapolis, MN USA
| | - Aleksandar Denic
- Department of Neurology, Mayo Clinic College of Medicine, Rochester, MN USA
| | | | - Sang-Hyun Oh
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN USA
- Department of Biomedical Engineering, University of Minnesota, Minneapolis, MN USA
| | - Moses Rodriguez
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN USA
- Department of Immunology, Mayo Clinic College of Medicine, Rochester, MN USA
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26
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Palma AS, Feizi T, Childs RA, Chai W, Liu Y. The neoglycolipid (NGL)-based oligosaccharide microarray system poised to decipher the meta-glycome. Curr Opin Chem Biol 2014; 18:87-94. [PMID: 24508828 DOI: 10.1016/j.cbpa.2014.01.007] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2013] [Revised: 01/09/2014] [Accepted: 01/09/2014] [Indexed: 01/01/2023]
Abstract
The neoglycolipid (NGL) technology is the basis of a state-of-the-art oligosaccharide microarray system. The NGL-based microarray system in the Glycosciences Laboratory Imperial College London (http://www3.imperial.ac.uk/glycosciences) is one of the two leading platforms for glycan microarrays, being offered for screening analyses to the broad biomedical community. Highlighted in this review are the sensitivity of the analysis system and, coupled with mass spectrometry, the provision for generating 'designer' microarrays from glycomes to identify novel ligands of biological relevance. Among recent applications are assignments of ligands for apicomplexan parasites, pandemic 2009 influenza virus, polyoma and reoviruses, an innate immune receptor against fungal pathogens, Dectin-1, and a novel protein of the endoplasmic reticulum, malectin; also the characterization of an elusive cancer-associated antigen. Some other contemporary advances in glycolipid-containing arrays and microarrays are also discussed.
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Affiliation(s)
- Angelina S Palma
- The Glycosciences Laboratory, Department of Medicine, Imperial College London, United Kingdom; REQUIMTE/CQFB, Faculty of Science and Technology, New University of Lisbon, Caparica, Portugal.
| | - Ten Feizi
- The Glycosciences Laboratory, Department of Medicine, Imperial College London, United Kingdom.
| | - Robert A Childs
- The Glycosciences Laboratory, Department of Medicine, Imperial College London, United Kingdom
| | - Wengang Chai
- The Glycosciences Laboratory, Department of Medicine, Imperial College London, United Kingdom
| | - Yan Liu
- The Glycosciences Laboratory, Department of Medicine, Imperial College London, United Kingdom.
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27
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Shi L, Chu Z, Dong X, Jin W, Dempsey E. A highly oriented hybrid microarray modified electrode fabricated by a template-free method for ultrasensitive electrochemical DNA recognition. NANOSCALE 2013; 5:10219-10225. [PMID: 24061929 DOI: 10.1039/c3nr03097k] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Highly oriented growth of a hybrid microarray was realized by a facile template-free method on gold substrates for the first time. The proposed formation mechanism involves an interfacial structure-directing force arising from self-assembled monolayers (SAMs) between gold substrates and hybrid crystals. Different SAMs and variable surface coverage of the assembled molecules play a critical role in the interfacial directing forces and influence the morphologies of hybrid films. A highly oriented hybrid microarray was formed on the highly aligned and vertical SAMs of 1,4-benzenedithiol molecules with rigid backbones, which afforded an intense structure-directing power for the oriented growth of hybrid crystals. Additionally, the density of the microarray could be adjusted by controlling the surface coverage of assembled molecules. Based on the hybrid microarray modified electrode with a large specific area (ca. 10 times its geometrical area), a label-free electrochemical DNA biosensor was constructed for the detection of an oligonucleotide fragment of the avian flu virus H5N1. The DNA biosensor displayed a significantly low detection limit of 5 pM (S/N = 3), a wide linear response from 10 pM to 10 nM, as well as excellent selectivity, good regeneration and high stability. We expect that the proposed template-free method can provide a new reference for the fabrication of a highly oriented hybrid array and the as-prepared microarray modified electrode will be a promising paradigm in constructing highly sensitive and selective biosensors.
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Affiliation(s)
- Lei Shi
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Chemistry and Chemical Engineering, Nanjing University of Technology, Nanjing 210009, P. R. China.
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28
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Kamat NP, Henry SJ, Lee D, Hammer DA. Single-vesicle patterning of uniform, giant polymersomes into microarrays. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2013; 9:2272-2276. [PMID: 23818399 DOI: 10.1002/smll.201202627] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2012] [Indexed: 06/02/2023]
Abstract
Giant, cell-sized polymersomes are functionalized and patterned at the single vesicle level. Microfluidic methods are employed to generate uniform diameter vesicles with high loading efficiencies and microcontact printing is used to generate patterns of adhesive ligand. A simple sensory capability is demonstrated with the immobilized array of vesicles.
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Affiliation(s)
- Neha P Kamat
- Department of Bioengineering, University of Pennsylvania, 210 South 33rd Street, Philadelphia, PA 19104, USA
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29
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Thiruvengadathan R, Korampally V, Ghosh A, Chanda N, Gangopadhyay K, Gangopadhyay S. Nanomaterial processing using self-assembly-bottom-up chemical and biological approaches. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2013; 76:066501. [PMID: 23722189 DOI: 10.1088/0034-4885/76/6/066501] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Nanotechnology is touted as the next logical sequence in technological evolution. This has led to a substantial surge in research activities pertaining to the development and fundamental understanding of processes and assembly at the nanoscale. Both top-down and bottom-up fabrication approaches may be used to realize a range of well-defined nanostructured materials with desirable physical and chemical attributes. Among these, the bottom-up self-assembly process offers the most realistic solution toward the fabrication of next-generation functional materials and devices. Here, we present a comprehensive review on the physical basis behind self-assembly and the processes reported in recent years to direct the assembly of nanoscale functional blocks into hierarchically ordered structures. This paper emphasizes assembly in the synthetic domain as well in the biological domain, underscoring the importance of biomimetic approaches toward novel materials. In particular, two important classes of directed self-assembly, namely, (i) self-assembly among nanoparticle-polymer systems and (ii) external field-guided assembly are highlighted. The spontaneous self-assembling behavior observed in nature that leads to complex, multifunctional, hierarchical structures within biological systems is also discussed in this review. Recent research undertaken to synthesize hierarchically assembled functional materials have underscored the need as well as the benefits harvested in synergistically combining top-down fabrication methods with bottom-up self-assembly.
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30
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Taajamaa L, Rojas OJ, Laine J, Yliniemi K, Kontturi E. Protein-assisted 2D assembly of gold nanoparticles on a polysaccharide surface. Chem Commun (Camb) 2013; 49:1318-20. [PMID: 23306350 DOI: 10.1039/c2cc37288f] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Site-specific assembly of gold nanoparticles on a polysaccharide surface was accomplished via a straightforward method exploiting interfacial polymer blends, selective protein adsorption and electrostatic interaction. The method could be useful in further applications due to the universal nature of the utilized phenomena.
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Affiliation(s)
- Laura Taajamaa
- Department of Forest Products Technology, School of Chemical Technology, Aalto University, P.O. Box 16300, FI-00076 Aalto, Finland
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31
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Dahlin AB, Wittenberg NJ, Höök F, Oh SH. Promises and Challenges of Nanoplasmonic Devices for Refractometric Biosensing. NANOPHOTONICS 2013; 2:83-101. [PMID: 24159429 PMCID: PMC3804425 DOI: 10.1515/nanoph-2012-0026] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Optical biosensors based on surface plasmon resonance (SPR) in metallic thin films are currently standard tools for measuring molecular binding kinetics and affinities - an important task for biophysical studies and pharmaceutical development. Motivated by recent progress in the design and fabrication of metallic nanostructures, such as nanoparticles or nanoholes of various shapes, researchers have been pursuing a new generation of biosensors harnessing tailored plasmonic effects in these engineered nanostructures. Nanoplasmonic devices, while demanding nanofabrication, offer tunability with respect to sensor dimension and physical properties, thereby enabling novel biological interfacing opportunities and extreme miniaturization. Here we provide an integrated overview of refractometric biosensing with nanoplasmonic devices and highlight some recent examples of nanoplasmonic sensors capable of unique functions that are difficult to accomplish with conventional SPR. For example, since the local field strength and spatial distribution can be readily tuned by varying the shape and arrangement of nanostructures, biomolecular interactions can be controlled to occur in regions of high field strength. This may improve signal-to-noise and also enable sensing a small number of molecules. Furthermore, the nanoscale plasmonic sensor elements may, in combination with nanofabrication and materials-selective surface-modifications, make it possible to merge affinity biosensing with nanofluidic liquid handling.
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Affiliation(s)
- Andreas B. Dahlin
- Chalmers University of Technology, Division of Bionanophotonics, Department of Applied Physics, Fysikgränd 3, 41296, Göteborg, Sweden
| | - Nathan J. Wittenberg
- Department of Electrical and Computer Engineering, Laboratory of Nanostructures and Biosensing, University of Minnesota, Twin Cities, 200 Union St. S.E., Minneapolis, MN 55455, U.S.A
| | - Fredrik Höök
- Chalmers University of Technology, Division of Bionanophotonics, Department of Applied Physics, Fysikgränd 3, 41296, Göteborg, Sweden
| | - Sang-Hyun Oh
- Department of Electrical and Computer Engineering, Laboratory of Nanostructures and Biosensing, University of Minnesota, Twin Cities, 200 Union St. S.E., Minneapolis, MN 55455, U.S.A
- Department of Biophysics and Chemical Biology, Seoul National University, Seoul 151-747, Korea
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32
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Kumar S, Wittenberg NJ, Oh SH. Nanopore-induced spontaneous concentration for optofluidic sensing and particle assembly. Anal Chem 2012; 85:971-7. [PMID: 23214989 DOI: 10.1021/ac302690w] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Metallic nanopore arrays have emerged as optofluidic platforms with multifarious sensing and analytical capabilities such as label-free surface plasmon resonance (SPR) sensing of molecular binding interactions and surface-enhanced Raman spectroscopy (SERS). However, directed delivery of analytes through open nanopores using traditional methods such as external electric fields or pressure gradients still remains difficult. We demonstrate that nanopore arrays have an intrinsic ability to promote flow through them via capillary flow and evaporation. This passive "nano-drain" mechanism is utilized to concentrate biomolecules on the surface of nanopores for improved detection sensitivity or create ordered nanoscale arrays of beads and liposomes. Without using any external pump or fluidic interconnects, we can concentrate and detect the presence of less than a femtomole of streptavidin in 10 μL of sample using fluorescence imaging. Liposome nanoarrays are also prepared in less than 5 min and used to detect lipid-protein interactions. We also demonstrate label-free SPR detection of analytes using metallic nanopore arrays. This method provides a fast, simple, transportable, and small-volume platform for labeled as well as label-free plasmonic analysis while improving the detection time and sensitivity.
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Affiliation(s)
- Shailabh Kumar
- Laboratory of Nanostructures and Biosensing, Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, Minnesota 55455, USA
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33
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Junesch J, Sannomiya T, Dahlin AB. Optical properties of nanohole arrays in metal-dielectric double films prepared by mask-on-metal colloidal lithography. ACS NANO 2012; 6:10405-15. [PMID: 23098107 DOI: 10.1021/nn304662e] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
We present the fabrication and optical characterization of plasmonic nanostructures consisting of nanohole arrays in two thin films, a metal and a dielectric. A novel method called mask-on-metal colloidal lithography is used to prepare high aspect ratio holes, providing efficient mass fabrication of stable structures with close to vertical walls and without the need for an adhesion layer under the metal. Our approach for understanding the transmission properties is based on solving the dispersions of the guided modes supported by the two films and calculating the influence from interference. The methodology is generic and can be extended to multilayered films. In particular, the influence from coupling to waveguide modes is discussed. We show that by rational design of structural dimensions it is possible to study only bonding surface plasmons and the associated hole transmission maximum. Further, numerical simulations with the multiple multipole program provide good agreement with experimental data and enable visualization of the asymmetric near-field distribution in the nanohole arrays, which is focused to the interior of the "nanowells". The refractometric sensitivity is evaluated experimentally both by liquid bulk changes and surface adsorption. We demonstrate how the localized mode provides reasonably good sensitivity in terms of resonance shift to molecular binding inside the voids. Importantly, high resolution sensing can be accomplished also for the surface plasmon mode, despite its extremely low figure of merit. This is accomplished by monitoring the coupling efficiency of light to plasmons instead of conventional sensing which is based on changes in plasmon energy. We suggest that these nanohole structures can be used for studying molecular transport through nanopores and the behavior of molecules confined in volumes of approximately one attoliter.
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Affiliation(s)
- Juliane Junesch
- Laboratory of Biosensors and Bioelectronics, Swiss Federal Institute of Technology, Zurich, Switzerland
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34
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Zheng YB, Kiraly B, Weiss PS, Huang TJ. Molecular plasmonics for biology and nanomedicine. Nanomedicine (Lond) 2012; 7:751-70. [PMID: 22630155 DOI: 10.2217/nnm.12.30] [Citation(s) in RCA: 102] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
The optical excitation of surface plasmons in metal nanoparticles leads to nanoscale spatial confinement of electromagnetic fields. The confined electromagnetic fields can generate intense, localized thermal energy and large near-field optical forces. The interaction between these effects and nearby molecules has led to the emerging field known as molecular plasmonics. Recent advances in molecular plasmonics have enabled novel optical materials and devices with applications in biology and nanomedicine. In this article, we categorize three main types of interactions between molecules and surface plasmons: optical, thermal and mechanical. Within the scope of each type of interaction, we will review applications of molecular plasmonics in biology and nanomedicine. We include a wide range of applications that involve sensing, spectral analysis, imaging, delivery, manipulation and heating of molecules, biomolecules or cells using plasmonic effects. We also briefly describe the physical principles of molecular plasmonics and progress in the nanofabrication, surface functionalization and bioconjugation of metal nanoparticles.
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Affiliation(s)
- Yue Bing Zheng
- California NanoSystems Institute, University of California, Los Angeles, CA 90095, USA
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35
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Lee SH, Lindquist NC, Wittenberg NJ, Jordan LR, Oh SH. Real-time full-spectral imaging and affinity measurements from 50 microfluidic channels using nanohole surface plasmon resonance. LAB ON A CHIP 2012; 12:3882-90. [PMID: 22895607 PMCID: PMC3447124 DOI: 10.1039/c2lc40455a] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
With recent advances in high-throughput proteomics and systems biology, there is a growing demand for new instruments that can precisely quantify a wide range of receptor-ligand binding kinetics in a high-throughput fashion. Here we demonstrate a surface plasmon resonance (SPR) imaging spectroscopy instrument capable of simultaneously extracting binding kinetics and affinities from 50 parallel microfluidic channels. The instrument utilizes large-area (~ cm(2)) metallic nanohole arrays as SPR sensing substrates and combines a broadband light source, a high-resolution imaging spectrometer and a low-noise CCD camera to extract spectral information from every channel in real time with a refractive index resolution of 7.7 × 10(-6) refractive index units. To demonstrate the utility of our instrument for quantifying a wide range of biomolecular interactions, each parallel microfluidic channel is coated with a biomimetic supported lipid membrane containing ganglioside (GM1) receptors. The binding kinetics of cholera toxin b (CTX-b) to GM1 are then measured in a single experiment from 50 channels. By combining the highly parallel microfluidic device with large-area periodic nanohole array chips, our SPR imaging spectrometer system enables high-throughput, label-free, real-time SPR biosensing, and its full-spectral imaging capability combined with nanohole arrays could enable integration of SPR imaging with concurrent surface-enhanced Raman spectroscopy.
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Affiliation(s)
- Si Hoon Lee
- Laboratory of Nanostructures and Biosensing, University of Minnesota, Minneapolis, MN 55455, United States
| | | | - Nathan J. Wittenberg
- Laboratory of Nanostructures and Biosensing, University of Minnesota, Minneapolis, MN 55455, United States
| | - Luke R. Jordan
- Laboratory of Nanostructures and Biosensing, University of Minnesota, Minneapolis, MN 55455, United States
| | - Sang-Hyun Oh
- Laboratory of Nanostructures and Biosensing, University of Minnesota, Minneapolis, MN 55455, United States
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36
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Abstract
Lipid bilayer membranes found in nature are heterogeneous mixtures of lipids and proteins. Model systems, such as supported lipid bilayers (SLBs), are often employed to simplify experimental systems while mimicking the properties of natural lipid bilayers. Here, we demonstrate a new method to form SLB arrays by first forming spherical supported lipid bilayers (SSLBs) on submicrometer-diameter SiO(2) beads. The SSLBs are then arrayed into microwells using a simple physical assembly method that requires no chemical modification of the substrate nor modification of the lipid membrane with recognition moieties. The resulting arrays have submicrometer SSLBs with 3 μm periodicity where >75% of the microwells are occupied by an individual SSLB. Because the arrays have high density, fluorescence from >1000 discrete SSLBs can be acquired with a single image capture. We show that 2-component random arrays can be formed, and we also use the arrays to determine the equilibrium dissociation constant for cholera toxin binding to ganglioside GM1. SSLB arrays are robust and are stable for at least one week in buffer.
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Affiliation(s)
- Nathan J. Wittenberg
- Laboratory of Nanostructures and Biosensing, Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN 55455, USA
| | - Timothy W. Johnson
- Laboratory of Nanostructures and Biosensing, Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN 55455, USA
| | - Sang-Hyun Oh
- Laboratory of Nanostructures and Biosensing, Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN 55455, USA
- Department of Biophysics and Chemical Biology, Seoul National University, Seoul 151-747, Korea
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37
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Nakamoto K, Kurita R, Niwa O. Electrochemical Surface Plasmon Resonance Measurement Based on Gold Nanohole Array Fabricated by Nanoimprinting Technique. Anal Chem 2012; 84:3187-91. [DOI: 10.1021/ac203160r] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Kohei Nakamoto
- National Institute of Advanced Industrial Science and Technology (AIST), Central 6, 1-1-1 Higashi, Tsukuba
305-8566, Japan
- Institute
of Materials Science, Graduate School of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8573,
Japan
| | - Ryoji Kurita
- National Institute of Advanced Industrial Science and Technology (AIST), Central 6, 1-1-1 Higashi, Tsukuba
305-8566, Japan
| | - Osamu Niwa
- National Institute of Advanced Industrial Science and Technology (AIST), Central 6, 1-1-1 Higashi, Tsukuba
305-8566, Japan
- Institute
of Materials Science, Graduate School of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8573,
Japan
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38
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Lindquist NC, Nagpal P, McPeak KM, Norris DJ, Oh SH. Engineering metallic nanostructures for plasmonics and nanophotonics. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2012; 75:036501. [PMID: 22790420 PMCID: PMC3396886 DOI: 10.1088/0034-4885/75/3/036501] [Citation(s) in RCA: 76] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Metallic nanostructures now play an important role in many applications. In particular, for the emerging fields of plasmonics and nanophotonics, the ability to engineer metals on nanometric scales allows the development of new devices and the study of exciting physics. This review focuses on top-down nanofabrication techniques for engineering metallic nanostructures, along with computational and experimental characterization techniques. A variety of current and emerging applications are also covered.
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Affiliation(s)
- Nathan C Lindquist
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN, U.S.A
- Physics Department, Bethel University, St. Paul, MN, U.S.A
| | | | - Kevin M McPeak
- Optical Materials Engineering Laboratory, ETH Zürich, Zürich, Switzerland
| | - David J Norris
- Optical Materials Engineering Laboratory, ETH Zürich, Zürich, Switzerland
| | - Sang-Hyun Oh
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN, U.S.A
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39
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Im H, Wittenberg NJ, Lindquist NC, Oh SH. Atomic layer deposition (ALD): A versatile technique for plasmonics and nanobiotechnology. JOURNAL OF MATERIALS RESEARCH 2012; 27:663-671. [PMID: 22865951 PMCID: PMC3410655 DOI: 10.1557/jmr.2011.434] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
While atomic layer deposition (ALD) has been used for many years as an industrial manufacturing method for microprocessors and displays, this versatile technique is finding increased use in the emerging fields of plasmonics and nanobiotechnology. In particular, ALD coatings can modify metallic surfaces to tune their optical and plasmonic properties, to protect them against unwanted oxidation and contamination, or to create biocompatible surfaces. Furthermore, ALD is unique among thin-film deposition techniques in its ability to meet the processing demands for engineering nanoplasmonic devices, offering conformal deposition of dense and ultra-thin films on high-aspect-ratio nanostructures at temperatures below 100 °C. In this review, we present key features of ALD and describe how it could benefit future applications in plasmonics, nanosciences, and biotechnology.
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Affiliation(s)
- Hyungsoon Im
- Laboratory of Nanostructures and Biosensing, Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN 55455, United States
| | - Nathan J. Wittenberg
- Laboratory of Nanostructures and Biosensing, Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN 55455, United States
| | - Nathan C. Lindquist
- Laboratory of Nanostructures and Biosensing, Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN 55455, United States
- Department of Physics, Bethel University, St. Paul, MN 55112, United States
| | - Sang-Hyun Oh
- Laboratory of Nanostructures and Biosensing, Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN 55455, United States
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40
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Im H, Sutherland JN, Maynard JA, Oh SH. Nanohole-based surface plasmon resonance instruments with improved spectral resolution quantify a broad range of antibody-ligand binding kinetics. Anal Chem 2012; 84:1941-7. [PMID: 22235895 DOI: 10.1021/ac300070t] [Citation(s) in RCA: 87] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
We demonstrate an affordable low-noise surface plasmon resonance (SPR) instrument based on extraordinary optical transmission (EOT) in metallic nanohole arrays and quantify a broad range of antibody-ligand binding kinetics with equilibrium dissociation constants ranging from 200 pM to 40 nM. This nanohole-based SPR instrument is straightforward to construct, align, and operate, since it is built around a standard microscope and a portable fiber-optic spectrometer. The measured refractive index resolution of this platform is 3.1 × 10(-6) without on-chip cooling, which is among the lowest reported for SPR sensors based on EOT. This is accomplished via rapid full-spectrum acquisition in 10 ms followed by frame averaging of the EOT spectra, which is made possible by the production of template-stripped gold nanohole arrays with homogeneous optical properties over centimeter-sized areas. Sequential SPR measurements are performed using a 12-channel microfluidic flow cell after optimizing surface modification protocols and antibody injection conditions to minimize mass-transport artifacts. The immobilization of a model ligand, the protective antigen of anthrax on the gold surface, is monitored in real-time with a signal-to-noise ratio of ~860. Subsequently, real-time binding kinetic curves were measured quantitatively between the antigen and a panel of small, 25 kDa single-chain antibodies at concentrations down to 1 nM. These results indicate that nanohole-based SPR instruments have potential for quantitative antibody screening and as a general-purpose platform for integrating SPR sensors with other bioanalytical tools.
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Affiliation(s)
- Hyungsoon Im
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, Minnesota 55455, USA
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41
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Nanofabrication for the analysis and manipulation of membranes. Ann Biomed Eng 2011; 40:1356-66. [PMID: 22143598 DOI: 10.1007/s10439-011-0479-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2011] [Accepted: 11/23/2011] [Indexed: 12/21/2022]
Abstract
Recent advancements and applications of nanofabrication have enabled the characterization and control of biological membranes at submicron scales. This review focuses on the application of nanofabrication towards the nanoscale observing, patterning, sorting, and concentrating membrane components. Membranes on living cells are a necessary component of many fundamental cellular processes that naturally incorporate nanoscale rearrangement of the membrane lipids and proteins. Nanofabrication has advanced these understandings, for example, by providing 30 nm resolution of membrane proteins with metal-enhanced fluorescence at the tip of a scanning probe on fixed cells. Naturally diffusing single molecules at high concentrations on live cells have been observed at 60 nm resolution by confining the fluorescence excitation light through nanoscale metallic apertures. The lateral reorganization on the plasma membrane during membrane-mediated signaling processes has been examined in response to nanoscale variations in the patterning and mobility of the signal-triggering molecules. Further, membrane components have been separated, concentrated, and extracted through on-chip electrophoretic and microfluidic methods. Nanofabrication provides numerous methods for examining and manipulating membranes for both greater understandings of membrane processes as well as for the application of membranes to other biophysical methods.
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