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Xu K, Leng H. Quantitative wear evaluation of tips based on sharp structures. BEILSTEIN JOURNAL OF NANOTECHNOLOGY 2024; 15:230-241. [PMID: 38379928 PMCID: PMC10877078 DOI: 10.3762/bjnano.15.22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Accepted: 02/07/2024] [Indexed: 02/22/2024]
Abstract
To comprehensively study the influence of atomic force microscopy (AFM) scanning parameters on tip wear, a tip wear assessment method based on sharp structures is proposed. This research explored the wear of AFM tips during tapping mode and examined the effects of scanning parameters on estimated tip diameter and surface roughness. The experiment results show that the non-destructive method for measuring tip morphology is highly repeatable. Additionally, a set of principles for optimizing scanning parameters has been proposed. These principles consider both scanning precision and tip wear. To achieve these results, an AFM probe was used to scan sharp structures, precisely acquiring the tip morphology. Tip wear was minimized by employing lower scanning frequency and free amplitude, and a set point of approximately 0.2, resulting in clear, high-quality AFM images.
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Affiliation(s)
- Ke Xu
- School of Electrical & Control Engineering, Shenyang Jianzhu University, Shenyang 110168, China
| | - Houwen Leng
- School of Electrical & Control Engineering, Shenyang Jianzhu University, Shenyang 110168, China
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2
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He Y, Yan Y, Geng Y. Morphology measurements by AFM tapping without causing surface damage: A phase shift characterization. Ultramicroscopy 2023; 254:113832. [PMID: 37619454 DOI: 10.1016/j.ultramic.2023.113832] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Accepted: 08/17/2023] [Indexed: 08/26/2023]
Abstract
The morphology measurement of a surface can be done by using an atomic force microscope (AFM). However, it is difficult to ensure that the measurement does not introduce any damage to the sample surface. This paper proposes that phase shift, the phase change between the original surface and scanned area, can provide a characteristic signal of the tip-surface interaction. On a poly (methyl methacrylate) thin film, the present investigation explored the relationship between phase shift and nondestructive surface morphology measurement under the tapping mode of an AFM. The study showed that when the drive amplitude was doubled, the phase shift reached from 0.47° to 1.85°. Under this condition, wrinkles became observable. With the tip radius in the range of 15-20 nm, no phase shift appeared between a scanned area and the original surface after multiple measurements. In this case, the tip-surface energy dissipation was in the range of 10-35 eV, showing a nondestructive interaction of the surface with the AFM tip. When the tip radius was about 55 nm, under the same tip excitation parameters, the energy dissipation per tap varied from 60 to 110 eV, and a phase shift occurred in the range of 0.02-0.64°, while the surface plastic deformation was still extremely minor after multiple tip scanning. A higher phase shift was occurred on the softer surface attributed to multiple scanning under tapping mode. The study found that the phase shift characteristics was a more sensible measure to signify the transition from a nondestructive to a destructive surface morphology measurement by using the tapping mode of an AFM.
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Affiliation(s)
- Yang He
- Shenzhen Key Laboratory of Cross-scale Manufacturing Mechanics, Southern University of Science and Technology, Shenzhen 518055, China; SUSTech Institute for Manufacturing Innovation, Southern University of Science and Technology, Shenzhen 518055, China; Department of Mechanics and Aerospace Engineering, Southern University of Science and Technology, Shenzhen 518055, China; The State Key Laboratory of Robotics and Systems, Robotics Institute, Harbin Institute of Technology, Harbin 150001, China; Center for Precision Engineering, Harbin Institute of Technology, Harbin 150001, China
| | - Yongda Yan
- The State Key Laboratory of Robotics and Systems, Robotics Institute, Harbin Institute of Technology, Harbin 150001, China; Center for Precision Engineering, Harbin Institute of Technology, Harbin 150001, China.
| | - Yanquan Geng
- The State Key Laboratory of Robotics and Systems, Robotics Institute, Harbin Institute of Technology, Harbin 150001, China; Center for Precision Engineering, Harbin Institute of Technology, Harbin 150001, China.
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3
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Fu B, Espinosa-Marzal RM. Velocity-weakening and -strengthening friction at single and multiasperity contacts with calcite single crystals. Proc Natl Acad Sci U S A 2022; 119:e2112505119. [PMID: 35613057 PMCID: PMC9295777 DOI: 10.1073/pnas.2112505119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Accepted: 04/06/2022] [Indexed: 11/18/2022] Open
Abstract
SignificanceThe empirical nature of rate-and-state friction (RSF) equations remains a drawback to their application to predict earthquakes. From nanoscale friction measurements on smooth and rough calcite crystals, a set of parameters is analyzed to elucidate microscopic processes dictating RSF. We infer the influence of roughness on the velocity dependence of friction in dry environment and that atomic attrition leads to stick-slip instabilities at slow velocities. In fault dynamics, stick-slip is associated with seismic slips. The aqueous environment eliminates atomic attrition and stick-slip and dissolves calcite under pressure. This yields remarkable lubrication, even more so in rough contacts, and suggests an alternative pathway for seismic slips. This work has implications for understanding mechanisms dictating fault strength and seismicity.
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Affiliation(s)
- Binxin Fu
- Department of Civil and Environmental Engineering, University of Illinois at Urbana–Champaign, Urbana, IL 61801
| | - Rosa M. Espinosa-Marzal
- Department of Civil and Environmental Engineering, University of Illinois at Urbana–Champaign, Urbana, IL 61801
- Department of Materials Science and Engineering, University of Illinois at Urbana–Champaign, Urbana, IL 61801
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4
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Temiryazev AG, Krayev AV, Temiryazeva MP. Two dynamic modes to streamline challenging atomic force microscopy measurements. BEILSTEIN JOURNAL OF NANOTECHNOLOGY 2021; 12:1226-1236. [PMID: 34868799 PMCID: PMC8609242 DOI: 10.3762/bjnano.12.90] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Accepted: 11/01/2021] [Indexed: 06/13/2023]
Abstract
The quality of topographic images obtained using atomic force microscopy strongly depends on the accuracy of the choice of scanning parameters. When using the most common scanning method - semicontact amplitude modulation (tapping) mode, the choice of scanning parameters is quite complicated, since it requires taking into account many factors and finding the optimal balance between them. A researcher's task can be significantly simplified by introducing new scanning techniques. Two such techniques are described: vertical and dissipation modes. Significantly simplified and formalized choice of the imaging parameters in these modes allows addressing a wide range of formerly challenging tasks - from scanning rough samples with high aspect ratio features to molecular resolution imaging.
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Affiliation(s)
- Alexei G Temiryazev
- Kotel’nikov Institute of Radioengineering and Electronics of RAS, Fryazino Branch, Vvedensky Square 1, Fryazino 141190, Russia
| | - Andrey V Krayev
- Horiba Instruments Inc., 359 Bel Marin Keys Boulevard, Suite 18, Novato, California 94949, United States
| | - Marina P Temiryazeva
- Kotel’nikov Institute of Radioengineering and Electronics of RAS, Fryazino Branch, Vvedensky Square 1, Fryazino 141190, Russia
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5
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Cafolla C, Voïtchovsky K. Real-time tracking of ionic nano-domains under shear flow. Sci Rep 2021; 11:19540. [PMID: 34599212 PMCID: PMC8486851 DOI: 10.1038/s41598-021-98137-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Accepted: 09/02/2021] [Indexed: 02/08/2023] Open
Abstract
The behaviour of ions at solid-liquid interfaces underpins countless phenomena, from the conduction of nervous impulses to charge transfer in solar cells. In most cases, ions do not operate as isolated entities, but in conjunction with neighbouring ions and the surrounding solution. In aqueous solutions, recent studies suggest the existence of group dynamics through water-mediated clusters but results allowing direct tracking of ionic domains with atomic precision are scarce. Here, we use high-speed atomic force microscopy to track the evolution of Rb+, K+, Na+ and Ca2+ nano-domains containing 20 to 120 ions adsorbed at the surface of mica in aqueous solution. The interface is exposed to a shear flow able to influence the lateral motion of single ions and clusters. The results show that, when in groups, metal ions tend to move with a relatively slow dynamics, as can be expected from a correlated group motion, with an average residence timescale of ~ 1-2 s for individual ions at a given atomic site. The average group velocity of the clusters depends on the ions' charge density and can be explained by the ion's hydration state. The lateral shear flow of the fluid is insufficient to desorb ions, but indirectly influences the diffusion dynamics by acting on ions in close vicinity to the surface. The results provide insights into the dynamics of ion clusters when adsorbed onto an immersed solid under shear flow.
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Affiliation(s)
- Clodomiro Cafolla
- grid.8250.f0000 0000 8700 0572Physics Department, Durham University, Durham, DH1 3LE UK
| | - Kislon Voïtchovsky
- grid.8250.f0000 0000 8700 0572Physics Department, Durham University, Durham, DH1 3LE UK
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6
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Collinson DW, Sheridan RJ, Palmeri MJ, Brinson LC. Best practices and recommendations for accurate nanomechanical characterization of heterogeneous polymer systems with atomic force microscopy. Prog Polym Sci 2021. [DOI: 10.1016/j.progpolymsci.2021.101420] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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7
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Massively parallel cantilever-free atomic force microscopy. Nat Commun 2021; 12:393. [PMID: 33452253 PMCID: PMC7810748 DOI: 10.1038/s41467-020-20612-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Accepted: 12/09/2020] [Indexed: 11/08/2022] Open
Abstract
Resolution and field-of-view often represent a fundamental tradeoff in microscopy. Atomic force microscopy (AFM), in which a cantilevered probe deflects under the influence of local forces as it scans across a substrate, is a key example of this tradeoff with high resolution imaging being largely limited to small areas. Despite the tremendous impact of AFM in fields including materials science, biology, and surface science, the limitation in imaging area has remained a key barrier to studying samples with intricate hierarchical structure. Here, we show that massively parallel AFM with >1000 probes is possible through the combination of a cantilever-free probe architecture and a scalable optical method for detecting probe-sample contact. Specifically, optically reflective conical probes on a comparatively compliant film are found to comprise a distributed optical lever that translates probe motion into an optical signal that provides sub-10 nm vertical precision. The scalability of this approach makes it well suited for imaging applications that require high resolution over large areas.
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8
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Xiang L, Zhang J, Gong L, Zeng H. Surface forces and interaction mechanisms of soft thin films under confinement: a short review. SOFT MATTER 2020; 16:6697-6719. [PMID: 32648881 DOI: 10.1039/d0sm00924e] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Surface forces of soft thin films under confinement in fluids play an important role in diverse biological and technological applications, such as bio-adhesion, lubrication and micro- and nano-electromechanical systems. Understanding the involved interaction mechanisms underlying the adhesion behaviors and tribological performances (i.e., friction and lubrication) of various confined soft thin films is significant in the development of both fundamental science and practical technologies. In this review, the fundamentals of surface forces are briefly presented. The widely utilized force measurement techniques including surface forces apparatus (SFA), atomic force microscopy (AFM) and spacer layer interferometry tribometer techniques are introduced. The advances in the fundamental understanding of a wide range of adhesion and tribological phenomena have been reviewed, in terms of the intermolecular and surface interaction mechanisms involved. The influences of various factors such as confined film properties, experimental conditions (e.g., normal load, and sliding velocity) and environmental variables (e.g., salts, salinity, additives and pH) on the adhesion, friction or lubrication forces of confined soft thin films are presented. The correlation between adhesion hysteresis and friction/lubrication behaviors has been discussed. Some of the challenging issues remaining and future perspectives are also provided.
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Affiliation(s)
- Li Xiang
- Department of Chemical and Materials Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada.
| | - Jiawen Zhang
- Department of Chemical and Materials Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada.
| | - Lu Gong
- Department of Chemical and Materials Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada.
| | - Hongbo Zeng
- Department of Chemical and Materials Engineering, University of Alberta, Edmonton, Alberta T6G 1H9, Canada.
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9
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Garcia R. Nanomechanical mapping of soft materials with the atomic force microscope: methods, theory and applications. Chem Soc Rev 2020; 49:5850-5884. [PMID: 32662499 DOI: 10.1039/d0cs00318b] [Citation(s) in RCA: 161] [Impact Index Per Article: 40.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/28/2024]
Abstract
Fast, high-resolution, non-destructive and quantitative characterization methods are needed to develop materials with tailored properties at the nanoscale or to understand the relationship between mechanical properties and cell physiology. This review introduces the state-of-the-art force microscope-based methods to map at high-spatial resolution the elastic and viscoelastic properties of soft materials. The experimental methods are explained in terms of the theories that enable the transformation of observables into material properties. Several applications in materials science, molecular biology and mechanobiology illustrate the scope, impact and potential of nanomechanical mapping methods.
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Affiliation(s)
- Ricardo Garcia
- Instituto de Ciencia de Materiales de Madrid, CSIC, c/Sor Juana Inés de la Cruz 3, 28049 Madrid, Spain.
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10
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Benaglia S, Amo CA, Garcia R. Fast, quantitative and high resolution mapping of viscoelastic properties with bimodal AFM. NANOSCALE 2019; 11:15289-15297. [PMID: 31386741 DOI: 10.1039/c9nr04396a] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Quantitative mapping of viscoelastic properties of soft matter with a nanoscale spatial resolution is an active and relevant research topic in atomic force microscopy (AFM) and nanoscale science characterization. The AFM has demonstrated its accuracy to measure the energy dissipated on a sample surface with an atomic-scale resolution. However, the transformation of energy dissipation values associated with viscoelastic interactions to a material property remains very challenging. A key issue is to establish the relationship between the AFM observables and some material properties such as viscosity coefficient or relaxation time. Another relevant issue is to determine the accuracy of the measurements. We demonstrate that bimodal atomic force microscopy enables the accurate measurement of several viscoelastic parameters such as the Young's modulus, viscosity coefficient, retardation time or loss tangent. The parameters mentioned above are measured at the same time that the true topography. We demonstrate that the loss tangent is proportional to the viscosity coefficient. We show that the mapping of viscoelastic properties neither degrades the spatial resolution nor the imaging speed of AFM. The results are presented for homogeneous polymer and block co-polymer samples with Young's modulus, viscosity and retardation times ranging from 100 MPa to 3 GPa, 10 to 400 Pa s and 50 to 400 ns, respectively. Numerical simulations validate the accuracy of bimodal AFM to determine the viscoelastic parameters.
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Affiliation(s)
- Simone Benaglia
- Material Science Factory, Instituto de Ciencia de Materiales de Madrid, CSIC, c/Sor Juana Ines de la Cruz 3, 28049 Madrid, Spain.
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11
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Jiryaei Sharahi H, Egberts P, Kim S. Mechanisms of friction reduction of nanoscale sliding contacts achieved through ultrasonic excitation. NANOTECHNOLOGY 2019; 30:075502. [PMID: 30523838 DOI: 10.1088/1361-6528/aaf3cd] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Friction reduction is an important issue for proper functioning of nano-/micro-electromechanical systems (N-/MEMS) due to their large surface to volume ratios and the inability of traditional liquid lubricants to effectively lubricate sliding contacts. One efficient technique to achieve substantially lowered friction at the nanoscale, as well as superlubricity in some instances, was investigated with the coupling of ultrasonic actuation of the sliding contact in an atomic force microscope (AFM). Despite the successful application of ultrasonic AFM methods in achieving mechanical property measurements and nanoscale subsurface imaging of soft and hard materials, the mechanism of friction reduction in the microscopic contact and the influence of the ultrasonic parameters on friction reduction are still elusive. In this study, the effects of excitation amplitude, applied normal force, tip radius, and humidity on friction have been investigated in detail. Ultrasonic force microscopy (UFM) results are compared against those collected with conventional contact-AFM (C-AFM) and indicate that a reduction in the adhesive interaction between the tip and sample, as well as a reduction in the shear strength can explain the mechanisms of the friction reduction in UFM method. This study opens up a new door for the control of friction and wear, which is critical for the increased lifetime of AFM probes, N-/MEMS devices and would potentially bridge the gap between nanotribology and other fields, such as nanomachining, nanolithography and biomaterials imaging.
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Affiliation(s)
- Hossein Jiryaei Sharahi
- Department of Mechanical and Manufacturing Engineering, University of Calgary, 2500 University Dr. NW., Calgary, Alberta T2N 1N4, Canada
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12
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Wang Z, Qian J, Li Y, Zhang Y, Shan G, Dou Z, Song Z, Lin R. Time-frequency analysis of the tip motion in liquids using the wavelet transform in dynamic atomic force microscopy. NANOTECHNOLOGY 2018; 29:385702. [PMID: 29957597 DOI: 10.1088/1361-6528/aad031] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
The tip motion of the dynamic atomic force microscope in liquids shows complex transient behaviors when using a low stiffness cantilever. The second flexural mode of the cantilever is momentarily excited. Multiple impacts between the tip and the sample might occur in one oscillation cycle. However, the commonly used Fourier transform method cannot provide time-related information about these transient features. To overcome this limitation, we apply the wavelet transform to perform the time-frequency analysis of the tip motion in liquids. The momentary excitation of the second mode and the phenomenon of multiple impacts are clearly shown in the time-frequency plane of the wavelet scalogram. The instantaneous frequencies and magnitudes of the second mode are extracted by the wavelet ridge analysis, which can provide quantitative estimations of the tip motion in the second mode. Moreover, the relations of the maximum instantaneous magnitude (MIM) to the amplitude setpoint and the Young's modulus of the sample surface are investigated. The results suggest that the MIM can be used to characterize the nanomechanical property of the sample surface at high amplitude setpoints.
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Affiliation(s)
- Zhenyu Wang
- School of Physics and Nuclear Energy Engineering, Beihang University, Beijing 100083, People's Republic of China. Key Laboratory of Micro-nano Measurement-Manipulation and Physics, Beihang University, Beijing 100083, People's Republic of China
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13
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Gujrati A, Khanal SR, Pastewka L, Jacobs TDB. Combining TEM, AFM, and Profilometry for Quantitative Topography Characterization Across All Scales. ACS APPLIED MATERIALS & INTERFACES 2018; 10:29169-29178. [PMID: 30052425 DOI: 10.1021/acsami.8b09899] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Surface roughness affects the functional properties of surfaces, including adhesion, friction, hydrophobicity, biological response, and electrical and thermal transport properties. However, experimental investigations to quantify these links are often inconclusive because surfaces are fractal-like, and the values of measured roughness parameters depend on measurement size. Here, we demonstrate the characterization of topography of an ultrananocrystalline diamond (UNCD) surface at the angstrom scale using transmission electron microscopy (TEM), as well as its combination with conventional techniques to achieve a comprehensive surface description spanning 8 orders of magnitude in size. We performed more than 100 individual measurements of the nanodiamond film using both TEM and conventional techniques (stylus profilometry and atomic force microscopy). While individual measurements of root-mean-square (RMS) height, RMS slope, and RMS curvature vary by orders of magnitude, we combine the various techniques using the power spectral density and use this to compute scale-independent parameters. This analysis reveals that "smooth" UNCD surfaces have an RMS slope greater than 1, even larger than the slope of the Austrian Alps when measured on the scale of a human step. This approach of comprehensive multiscale roughness characterization, measured with angstrom-scale detail, will enable the systematic evaluation and optimization of other technologically relevant surfaces, as well as systematic testing of the many analytical and numerical models for the behavior of rough surfaces.
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Affiliation(s)
- Abhijeet Gujrati
- Mechanical Engineering and Materials Science , University of Pittsburgh , Pittsburgh , Pennsylvania 15261 , United States
| | - Subarna R Khanal
- Mechanical Engineering and Materials Science , University of Pittsburgh , Pittsburgh , Pennsylvania 15261 , United States
| | - Lars Pastewka
- Microsystems Engineering , University of Freiburg , 79110 Freiburg , Germany
| | - Tevis D B Jacobs
- Mechanical Engineering and Materials Science , University of Pittsburgh , Pittsburgh , Pennsylvania 15261 , United States
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14
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Gramazio F, Lorenzoni M, Pérez-Murano F, Rull Trinidad E, Staufer U, Fraxedas J. Functional dependence of resonant harmonics on nanomechanical parameters in dynamic mode atomic force microscopy. BEILSTEIN JOURNAL OF NANOTECHNOLOGY 2017; 8:883-891. [PMID: 28503399 PMCID: PMC5405692 DOI: 10.3762/bjnano.8.90] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2016] [Accepted: 03/26/2017] [Indexed: 06/01/2023]
Abstract
We present a combined theoretical and experimental study of the dependence of resonant higher harmonics of rectangular cantilevers of an atomic force microscope (AFM) as a function of relevant parameters such as the cantilever force constant, tip radius and free oscillation amplitude as well as the stiffness of the sample's surface. The simulations reveal a universal functional dependence of the amplitude of the 6th harmonic (in resonance with the 2nd flexural mode) on these parameters, which can be expressed in terms of a gun-shaped function. This analytical expression can be regarded as a practical tool for extracting qualitative information from AFM measurements and it can be extended to any resonant harmonics. The experiments confirm the predicted dependence in the explored 3-45 N/m force constant range and 2-345 GPa sample's stiffness range. For force constants around 25 N/m, the amplitude of the 6th harmonic exhibits the largest sensitivity for ultrasharp tips (tip radius below 10 nm) and polymers (Young's modulus below 20 GPa).
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Affiliation(s)
- Federico Gramazio
- Catalan Institute of Nanoscience and Nanotechnology (ICN2), CSIC and The Barcelona Institute of Science and Technology, Campus UAB, Bellaterra, 08193 Barcelona, Spain
| | - Matteo Lorenzoni
- Instituto de Microelectrónica de Barcelona (IMB-CNM, CSIC), Campus UAB, 08193 Bellaterra, Barcelona, Spain
| | - Francesc Pérez-Murano
- Instituto de Microelectrónica de Barcelona (IMB-CNM, CSIC), Campus UAB, 08193 Bellaterra, Barcelona, Spain
| | | | - Urs Staufer
- Technical University of Delft, Mekelweg 2, 2628CD Delft, The Netherlands
| | - Jordi Fraxedas
- Catalan Institute of Nanoscience and Nanotechnology (ICN2), CSIC and The Barcelona Institute of Science and Technology, Campus UAB, Bellaterra, 08193 Barcelona, Spain
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15
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Perrino AP, Garcia R. How soft is a single protein? The stress-strain curve of antibody pentamers with 5 pN and 50 pm resolutions. NANOSCALE 2016; 8:9151-8. [PMID: 26732032 DOI: 10.1039/c5nr07957h] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Understanding the mechanical functionalities of complex biological systems requires the measurement of the mechanical compliance of their smallest components. Here, we develop a force microscopy method to quantify the softness of a single antibody pentamer by measuring the stress-strain curve with force and deformation resolutions, respectively, of 5 pN and 50 pm. The curve shows three distinctive regions. For ultrasmall compressive forces (5-75 pN), the protein's central region shows that the strain and stress are proportional (elastic regime). This region has an average Young's modulus of 2.5 MPa. For forces between 80 and 220 pN, the stress is roughly proportional to the strain with a Young's modulus of 9 MPa. Higher forces lead to irreversible deformations (plastic regime). Full elastic recovery could reach deformations amounting to 40% of the protein height. The existence of two different elastic regions is explained in terms of the structure of the antibody central region. The stress-strain curve explains the capability of the antibody to sustain multiple collisions without any loss of biological functionality.
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Affiliation(s)
- Alma P Perrino
- Instituto de Ciencia de Materiales de Madrid (CSIC), c/ Sor Juana Ines de la Cruz 3, 28049 Madrid, Spain.
| | - Ricardo Garcia
- Instituto de Ciencia de Materiales de Madrid (CSIC), c/ Sor Juana Ines de la Cruz 3, 28049 Madrid, Spain.
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16
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Payam AF, Martin-Jimenez D, Garcia R. Force reconstruction from tapping mode force microscopy experiments. NANOTECHNOLOGY 2015; 26:185706. [PMID: 25876817 DOI: 10.1088/0957-4484/26/18/185706] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Fast, accurate, and robust nanomechanical measurements are intensely studied in materials science, applied physics, and molecular biology. Amplitude modulation force microscopy (tapping mode) is the most established nanoscale characterization technique of surfaces for air and liquid environments. However, its quantitative capabilities lag behind its high spatial resolution and robustness. We develop a general method to transform the observables into quantitative force measurements. The force reconstruction algorithm has been deduced on the assumption that the observables (amplitude and phase shift) are slowly varying functions of the tip-surface separation. The accuracy and applicability of the method is validated by numerical simulations and experiments. The method is valid for liquid and air environments, small and large free amplitudes, compliant and rigid materials, and conservative and non-conservative forces.
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Affiliation(s)
- Amir F Payam
- Instituto de Ciencia de Materiales de Madrid, CSIC Sor Juana Inés de la Cruz 3 28049 Madrid, Spain
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17
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Vahdat V, Ryan KE, Keating PL, Jiang Y, Adiga SP, Schall JD, Turner KT, Harrison JA, Carpick RW. Atomic-scale wear of amorphous hydrogenated carbon during intermittent contact: a combined study using experiment, simulation, and theory. ACS NANO 2014; 8:7027-40. [PMID: 24922087 DOI: 10.1021/nn501896e] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
In this study, we explore the wear behavior of amplitude modulation atomic force microscopy (AM-AFM, an intermittent-contact AFM mode) tips coated with a common type of diamond-like carbon, amorphous hydrogenated carbon (a-C:H), when scanned against an ultra-nanocrystalline diamond (UNCD) sample both experimentally and through molecular dynamics (MD) simulations. Finite element analysis is utilized in a unique way to create a representative geometry of the tip to be simulated in MD. To conduct consistent and quantitative experiments, we apply a protocol that involves determining the tip-sample interaction geometry, calculating the tip-sample force and normal contact stress over the course of the wear test, and precisely quantifying the wear volume using high-resolution transmission electron microscopy imaging. The results reveal gradual wear of a-C:H with no sign of fracture or plastic deformation. The wear rate of a-C:H is consistent with a reaction-rate-based wear theory, which predicts an exponential dependence of the rate of atom removal on the average normal contact stress. From this, kinetic parameters governing the wear process are estimated. MD simulations of an a-C:H tip, whose radius is comparable to the tip radii used in experiments, making contact with a UNCD sample multiple times exhibit an atomic-level removal process. The atomistic wear events observed in the simulations are correlated with under-coordinated atomic species at the contacting surfaces.
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Affiliation(s)
- Vahid Vahdat
- Department of Mechanical Engineering and Applied Mechanics, University of Pennsylvania , Philadelphia, Pennsylvania 19104, United States
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