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Zhang X, Lu KZ, Yan HW, Feng ZM, Yang YN, Jiang JS, Zhang PC. An ingenious method for the determination of the relative and absolute configurations of compounds containing aryl-glycerol fragments by 1H NMR spectroscopy. RSC Adv 2021; 11:8107-8116. [PMID: 35423312 PMCID: PMC8695069 DOI: 10.1039/d0ra09712h] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2020] [Accepted: 02/11/2021] [Indexed: 11/21/2022] Open
Abstract
A concise method was established to determine the relative and absolute configurations of aryl-glycerols that depend on the chemical shift differences (Δδ) of the diastereotopic methylene protons (H-3) by 1H NMR spectroscopy. When using DMSO-d6 as the preferred solvent, the threo configuration corresponded to a larger ΔδH3a–H3b value (>0.15 ppm), whereas the erythro configuration (<0.07 ppm) corresponded to a smaller value. Furthermore, the absolute configurations were determined with the aid of a simple acylation reaction through camphanoyl chloride. In the threo enantiomers, the Δδ value of the 1R,2R configuration was <0.15 ppm, and that of the 1S,2S configuration was >0.20 ppm. In the erythro enantiomers, the Δδ value of 1R,2S was >0.09 ppm, and that of 1S,2R was <0.05 ppm. Remarkably, this empirical rule is invalid in CDCl3. In addition, this method was also verified by a quantum 1H NMR calculation. A concise method was established to determine the relative and absolute configurations of aryl-glycerols that depend on the chemical shift differences (Δδ) of the diastereotopic methylene protons (H-3) by 1H NMR spectroscopy.![]()
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Affiliation(s)
- Xu Zhang
- State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences, Peking Union Medical College Beijing 100050 People's Republic of China
| | - Kai-Zhou Lu
- State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences, Peking Union Medical College Beijing 100050 People's Republic of China
| | - Hai-Wei Yan
- State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences, Peking Union Medical College Beijing 100050 People's Republic of China
| | - Zi-Ming Feng
- State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences, Peking Union Medical College Beijing 100050 People's Republic of China
| | - Ya-Nan Yang
- State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences, Peking Union Medical College Beijing 100050 People's Republic of China
| | - Jian-Shuang Jiang
- State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences, Peking Union Medical College Beijing 100050 People's Republic of China
| | - Pei-Cheng Zhang
- State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences, Peking Union Medical College Beijing 100050 People's Republic of China
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2
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Wang W, Xia X, Bian G, Song L. A chiral sensor for recognition of varied amines based on 19F NMR signals of newly designed rhodium complexes. Chem Commun (Camb) 2019; 55:6098-6101. [PMID: 31069349 DOI: 10.1039/c9cc01942a] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A novel chiral octahedral rhodium complex containing fluorine has been developed to be an excellent chiral sensor for a variety of amines including diamines, monoamines, amino alcohols and amino acids, showing well distinguishable 19F NMR signals and an accurate measurement of enantiomeric determination.
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Affiliation(s)
- Wei Wang
- The Key Laboratory of Coal to Ethylene Glycol and Its Related Technology, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, Fujian 350002, P. R. China.
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3
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Thomas R, Tamaoki N. Determination of the absolute stereostructure of a cyclic azobenzene from the crystal structure of the precursor containing a heavy element. Beilstein J Org Chem 2016; 12:2211-2215. [PMID: 27829929 PMCID: PMC5082482 DOI: 10.3762/bjoc.12.212] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2016] [Accepted: 10/07/2016] [Indexed: 01/28/2023] Open
Abstract
Single crystal X-ray diffraction has been used as one of the common methods for the unambiguous determination of the absolute stereostructure of chiral molecules. However, this method is limited to molecules containing heavy atoms or to molecules with the possibility of functionalization with heavy elements or chiral internal references. Herein, we report the determination of the absolute stereostructure of the enantiomers of molecule (E)-2, which lacks the possibility of functionalization, using a reverse method, i.e., defunctionalization of its precursor of known stereostructure with bromine substitution (S-(-)-(E)-1). A reductive debromination of S-(-)-(E)-1 results in formation of one of the enantiomers of (E)-2. Using a combination of HPLC and CD spectroscopy we could safely assign the stereostructure of one of the enantiomers of (E)-2, the reduced product R-(-)-(E)-1.
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Affiliation(s)
- Reji Thomas
- Research Institute for Electronic for Science, Hokkaido University, Kita-ku, N 20, W 10, Sapporo-001-0020, Japan
- Postgraduate and Research Department of Chemistry, Farook College, Farook College P. O., Kozhikode, 673632, Kerala, India
| | - Nobuyuki Tamaoki
- Research Institute for Electronic for Science, Hokkaido University, Kita-ku, N 20, W 10, Sapporo-001-0020, Japan
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4
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Hernández K, Parella T, Joglar J, Bujons J, Pohl M, Clapés P. Expedient Synthesis of
C
‐Aryl Carbohydrates by Consecutive Biocatalytic Benzoin and Aldol Reactions. Chemistry 2015; 21:3335-46. [DOI: 10.1002/chem.201406156] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2014] [Indexed: 01/21/2023]
Affiliation(s)
- Karel Hernández
- Biotransformation and Bioactive Molecules Group, Instituto de Química Avanzada de Cataluña, IQAC‐CSIC. Jordi Girona 18‐26, 08034 Barcelona (Spain), Fax: (+34) 932045904
| | - Teodor Parella
- Servei de Ressonància Magnètica Nuclear. Dept Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Cerdanyola del Vallès (Spain)
| | - Jesús Joglar
- Biotransformation and Bioactive Molecules Group, Instituto de Química Avanzada de Cataluña, IQAC‐CSIC. Jordi Girona 18‐26, 08034 Barcelona (Spain), Fax: (+34) 932045904
| | - Jordi Bujons
- Biotransformation and Bioactive Molecules Group, Instituto de Química Avanzada de Cataluña, IQAC‐CSIC. Jordi Girona 18‐26, 08034 Barcelona (Spain), Fax: (+34) 932045904
| | - Martina Pohl
- IBG‐1: Biotechnologie, Forschungszentrum Jülich GmbH, 52425 Jülich (Germany)
| | - Pere Clapés
- Biotransformation and Bioactive Molecules Group, Instituto de Química Avanzada de Cataluña, IQAC‐CSIC. Jordi Girona 18‐26, 08034 Barcelona (Spain), Fax: (+34) 932045904
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5
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Designing chiral derivatizing agents (CDA) for the NMR assignment of the absolute configuration: a theoretical and experimental approach with thiols as a case study. Tetrahedron 2014. [DOI: 10.1016/j.tet.2013.10.077] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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6
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Kumar P, Dubey A, Harbindu A. Enantio- and diastereocontrolled conversion of chiral epoxides to trans-cyclopropane carboxylates: application to the synthesis of cascarillic acid, grenadamide and L-(-)-CCG-II. Org Biomol Chem 2012; 10:6987-94. [PMID: 22832742 DOI: 10.1039/c2ob25622c] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An efficient high yielding improved method for the enantio- and diastereoselective cyclopropanation of chiral epoxides using triethylphosphonoacetate and base (Wadsworth-Emmons cyclopropanation) is reported. The utility of this protocol is illustrated by concise and practical synthesis of cascarillic acid, grenadamide and L-(-)-CCG-II, a cyclopropane containing natural products.
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Affiliation(s)
- Pradeep Kumar
- Division of Organic Chemistry, National Chemical Laboratory, Pune 411008, India.
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7
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Seco JM, Quiñoá E, Riguera R. Assignment of the Absolute Configuration of Polyfunctional Compounds by NMR Using Chiral Derivatizing Agents. Chem Rev 2012; 112:4603-41. [DOI: 10.1021/cr2003344] [Citation(s) in RCA: 150] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- J. M. Seco
- Department of Organic
Chemistry and Center for Research in Biological
Chemistry and Molecular Materials (CIQUS), University of Santiago
de Compostela, E-15782 Santiago de Compostela, Spain
| | - E. Quiñoá
- Department of Organic
Chemistry and Center for Research in Biological
Chemistry and Molecular Materials (CIQUS), University of Santiago
de Compostela, E-15782 Santiago de Compostela, Spain
| | - R. Riguera
- Department of Organic
Chemistry and Center for Research in Biological
Chemistry and Molecular Materials (CIQUS), University of Santiago
de Compostela, E-15782 Santiago de Compostela, Spain
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8
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Zeng Q, Cheng XR, Qin JJ, Guan B, Chang RJ, Yan SK, Jin HZ, Zhang WD. Norlignans and Phenylpropanoids from Metasequoia glyptostroboidesHu et Cheng. Helv Chim Acta 2012. [DOI: 10.1002/hlca.201100363] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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9
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Wenzel TJ, Chisholm CD. Using NMR spectroscopic methods to determine enantiomeric purity and assign absolute stereochemistry. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2011; 59:1-63. [PMID: 21600355 DOI: 10.1016/j.pnmrs.2010.07.003] [Citation(s) in RCA: 118] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2010] [Accepted: 07/28/2010] [Indexed: 05/30/2023]
Affiliation(s)
- Thomas J Wenzel
- Department of Chemistry, Bates College, Lewiston, Maine 04240, USA.
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10
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Louzao I, Seco JM, Quiñoá E, Riguera R. 13C NMR as a general tool for the assignment of absolute configuration. Chem Commun (Camb) 2010; 46:7903-5. [PMID: 20886140 DOI: 10.1039/c0cc02774j] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
(13)C NMR, alone or in combination with (1)H NMR, allows the assignment of the absolute configuration of chiral alcohols, amines, carboxylic acids, thiols, cyanohydrins, sec,sec-diols and sec,sec-aminoalcohols, derivatized with appropriate chiral auxiliaries. This extends the assignment possibilities of NMR to fully deuterated and to nonproton containing compounds.
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Affiliation(s)
- Iria Louzao
- Department of Organic Chemistry and Center for Research in Biological Chemistry and Molecular Materials, University of Santiago de Compostela, E-15782 Santiago de Compostela, Spain
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11
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Zörb A, Brückner R. Conversion of Conjugated Enones into Enantiomerically Pure -Hydroxy Ketones or 1,3-Diols - Samarium(II) Bromide Reductions of Protected ,-Dihydroxy Ketones. European J Org Chem 2010. [DOI: 10.1002/ejoc.201000279] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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12
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Leiro V, Seco J, Quiñoá E, Riguera R. Using a Combination of Magnetic Anisotropic Effects for the Configurational Assignment of Amino Alcohols. Chem Asian J 2010; 5:2106-12. [DOI: 10.1002/asia.201000229] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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13
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Freire F, Lallana E, Quiñoá E, Riguera R. The Stereochemistry of 1,2,3-Triols Revealed by1H NMR Spectroscopy: Principles and Applications. Chemistry 2009; 15:11963-75. [DOI: 10.1002/chem.200901505] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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14
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Porto S, Seco JM, Espinosa JF, Quiñoá E, Riguera R. Resin-Bound Chiral Derivatizing Agents for Assignment of Configuration by NMR Spectroscopy. J Org Chem 2008; 73:5714-22. [DOI: 10.1021/jo800469c] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Silvia Porto
- Departamento de Química Orgánica, Facultad de Química, and Unidad de RMN de Biomoléculas Asociada al CSIC, Universidad de Santiago de Compostela, 15782, Santiago de Compostela, Spain, Centro de Investigación Lilly, Avda de la Industria 30, 28108, Alcobendas, Madrid, Spain
| | - José Manuel Seco
- Departamento de Química Orgánica, Facultad de Química, and Unidad de RMN de Biomoléculas Asociada al CSIC, Universidad de Santiago de Compostela, 15782, Santiago de Compostela, Spain, Centro de Investigación Lilly, Avda de la Industria 30, 28108, Alcobendas, Madrid, Spain
| | - Juan Félix Espinosa
- Departamento de Química Orgánica, Facultad de Química, and Unidad de RMN de Biomoléculas Asociada al CSIC, Universidad de Santiago de Compostela, 15782, Santiago de Compostela, Spain, Centro de Investigación Lilly, Avda de la Industria 30, 28108, Alcobendas, Madrid, Spain
| | - Emilio Quiñoá
- Departamento de Química Orgánica, Facultad de Química, and Unidad de RMN de Biomoléculas Asociada al CSIC, Universidad de Santiago de Compostela, 15782, Santiago de Compostela, Spain, Centro de Investigación Lilly, Avda de la Industria 30, 28108, Alcobendas, Madrid, Spain
| | - Ricardo Riguera
- Departamento de Química Orgánica, Facultad de Química, and Unidad de RMN de Biomoléculas Asociada al CSIC, Universidad de Santiago de Compostela, 15782, Santiago de Compostela, Spain, Centro de Investigación Lilly, Avda de la Industria 30, 28108, Alcobendas, Madrid, Spain
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15
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Leiro V, Seco JM, Quiñoá E, Riguera R. Cross Interaction Between Auxiliaries: The Chirality of Amino Alcohols by NMR. Org Lett 2008; 10:2729-32. [DOI: 10.1021/ol8008528] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Victoria Leiro
- Departamento de Química Orgánica, Facultad de Química y Unidad de RMN de Biomoléculas Asociada al CSIC, Universidad de Santiago de Compostela, E-15782 Santiago de Compostela, Spain
| | - José Manuel Seco
- Departamento de Química Orgánica, Facultad de Química y Unidad de RMN de Biomoléculas Asociada al CSIC, Universidad de Santiago de Compostela, E-15782 Santiago de Compostela, Spain
| | - Emilio Quiñoá
- Departamento de Química Orgánica, Facultad de Química y Unidad de RMN de Biomoléculas Asociada al CSIC, Universidad de Santiago de Compostela, E-15782 Santiago de Compostela, Spain
| | - Ricardo Riguera
- Departamento de Química Orgánica, Facultad de Química y Unidad de RMN de Biomoléculas Asociada al CSIC, Universidad de Santiago de Compostela, E-15782 Santiago de Compostela, Spain
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16
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Kalaitzakis D, Smonou I. A Convenient Method for the Assignment of Relative Configuration of Acyclic α-Alkyl-β-hydroxy Carbonyl Compounds by 1H NMR. J Org Chem 2008; 73:3919-21. [DOI: 10.1021/jo800066a] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Dimitris Kalaitzakis
- Department of Chemistry, University of Crete, Voutes-Iraklio 71003, Crete, Greece
| | - Ioulia Smonou
- Department of Chemistry, University of Crete, Voutes-Iraklio 71003, Crete, Greece
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17
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Freire F, Calderón F, Seco JM, Fernandez-Mayoralas A, Quiñoá E, Riguera R. Relative and Absolute Stereochemistry of Secondary/Secondary Diols: Low-Temperature 1H NMR of Their bis-MPA Esters. J Org Chem 2007; 72:2297-301. [PMID: 17343414 DOI: 10.1021/jo061939r] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Comparison of the room- and low-temperature 1H NMR spectra of the bis-(R)- or bis-(S)-MPA ester derivative of an open chain sec,sec-1,2-diol allows the easy determination of its relative stereochemistry and in some cases absolute configuration. If the diol is anti, its absolute configuration can be directly deduced from the signs of DeltadeltaT1T2 for substituents R1/R2, but if the relative stereochemistry of the diol is syn, the assignment of its absolute configuration requires the preparation of two derivatives (both the bis-(R)- and bis-(S)-MPA esters), comparison of their room-temperature 1H NMR spectra, and calculation of the DeltadeltaRS signs for the methines Halpha(R1) and Halpha(R2) and R1/R2 protons. The reliability of these correlations is validated with 17 diols of known absolute configuration used as model compounds.
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Affiliation(s)
- Félix Freire
- Departamento de Química Orgánica, Facultad de Química, and Unidad de RMN de Biomoléculas Asociada al CSIC, Universidad de Santiago de Compostela, 15782, Santiago de Compostela, Spain
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18
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Barreto RDL, Carpes MJ, Santana CC, Correia CR. Synthesis of conformationally restricted acetylcholine analogues. Comparing lipase-mediated resolution with simulated moving bed chromatography of arylated β-hydroxy-pyrrolidines. ACTA ACUST UNITED AC 2007. [DOI: 10.1016/j.tetasy.2007.01.030] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Błazewska K, Paneth P, Gajda T. The Assignment of the Absolute Configuration of Diethyl Hydroxy- and Aminophosphonates by 1H and 31P NMR Using Naproxen as a Reliable Chiral Derivatizing Agent. J Org Chem 2007; 72:878-87. [PMID: 17253807 DOI: 10.1021/jo062097z] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The assignment of the absolute configuration of hydroxy- and aminophosphonates by their double derivatization with commercially available naproxen is presented. The correlation between the spatial arrangement around the stereogenic carbon center and the signs of the DeltadeltaRS allows determination of the absolute configuration of hydroxy- and aminophosphonates by simple comparison of the 1H and 31P NMR spectra of the (R)- and (S)-naproxen ester or amide derivatives. Extensive conformational analysis (theoretical calculations, low-temperature experiments) supported by the NMR studies of structurally diverse naproxen esters and amides of hydroxy- and aminophosphonates proved that a simplified model can be successfully used.
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Affiliation(s)
- Katarzyna Błazewska
- The Faculty of Chemistry, Technical University of Lodz (Politechnika), Zeromskiego St. 116, 90-924 Lodz, Poland
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