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Lan J, Lu X, Ren B, Duo F, Niu X, Si J. Visible-light-driven photocatalytic carboxylation to aromatic carboxylic acids with CO 2. Org Biomol Chem 2024; 22:682-693. [PMID: 38189574 DOI: 10.1039/d3ob01788e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2024]
Abstract
(Hetero)aromatic carboxylic acids and their derivatives attract attention due to their role in the synthesis of several biologically active molecules, active pharmaceutical ingredients, polymers, etc. Carbon dioxide (CO2) is a prime C1 source for the synthesis of aromatic carboxylic acids because of its nontoxicity, nonflammability, abundance and renewability. Owing to the thermodynamic and chemical inertness of CO2, traditional carboxylation to aromatic carboxylic acids with CO2 is always performed under harsh reaction conditions or using stoichiometric metallic reductants. Visible-light-driven carboxylation with CO2 provides an environmentally benign, mild, and high-efficiency route for the production of aromatic carboxylic acids. This review comprehensively introduces the visible-light-driven preparation of aromatic carboxylic acids through a visible-light-driven oxidative addition and reductive elimination mechanism, binding of aryl (radical) anions which are produced by photoinduced electron transfer (PET) to CO2, binding of carbon dioxide anion radicals (CO2˙-) which are formed by PET to aryl compounds, radical coupling between CO2˙- and aryl radicals, and other mechanisms. Finally, this review provides a summary and the future work direction. This article offers a theoretical guidance for efficient synthesis of aromatic carboxylic acids via photocatalysis.
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Affiliation(s)
- Jihong Lan
- School of Chemistry and Materials Engineering, Xinxiang University, Xinxiang 453003, China.
| | - Xiaoyan Lu
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Luoyang, China
| | - Bo Ren
- School of Pharmacy, Xinxiang University, Xinxiang 453003, China
| | - Fangfang Duo
- School of Chemistry and Materials Engineering, Xinxiang University, Xinxiang 453003, China.
| | - Xinkai Niu
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Luoyang, China
| | - Jiangju Si
- School of Chemistry and Materials Engineering, Xinxiang University, Xinxiang 453003, China.
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2
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Zhou Y, Zhang S, Huang S, Fan X, Su H, Tan T. De novo biosynthesis of 2-hydroxyterephthalic acid, the monomer for high-performance hydroxyl modified PBO fiber, by enzymatic Kolbe-Schmitt reaction with CO 2 fixation. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2023; 16:179. [PMID: 37986026 PMCID: PMC10662693 DOI: 10.1186/s13068-023-02413-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Accepted: 10/18/2023] [Indexed: 11/22/2023]
Abstract
BACKGROUND High-performance poly(p-phenylenebenzobisoxazole) (PBO) fiber, with excellent mechanical properties (stiffness, strength, and toughness), high thermal stability combined and light weight, are widely employed in automotive and aerospace composites, body armor and sports goods. Hydroxyl modified PBO (HPBO) fiber shows better photostability and interfacial shear strength. 2-Hydroxyterephthalic acid (2-HTA), the monomer for the HPBO fiber, is usually synthesized by chemical method, which has poor space selectivity and high energy consumption. The enzymatic Kolbe-Schmitt reaction, which carboxylates phenolic substrates to generate hydroxybenzoic acids with bicarbonate/CO2, was applied in de novo biosynthesis of 2-HTA with CO2 fixation. RESULTS The biosynthesis of 2-HTA was achieved by the innovative application of hydroxybenzoic acid (de)carboxylases to carboxylation of 3-hydroxybenzoic acid (3-HBA) at the para-position of the benzene carboxyl group, known as enzymatic Kolbe-Schmitt reaction. 2,3-Dihydroxybenzoic acid decarboxylase from Aspergillus oryzae (2,3-DHBD_Ao) were expressed in recombinant E. coli and showed highest activity. The yield of 2-HTA was 108.97 ± 2.21 μg/L/mg protein in the whole-cell catalysis. In addition, two amino acid substitutions, F27G and T62A, proved to be of great help in improving 2,3-DHBD activity. The double site mutation F27G/T62A increased the production of 2-HTA in the whole-cell catalysis by 24.7-fold, reaching 2.69 ± 0.029 mg/L/mg protein. Moreover, de novo biosynthetic pathway of 2-HTA was constructed by co-expression of 2,3-DHBD_Ao and 3-hydroxybenzoate synthase Hyg5 in S. cerevisiae S288C with Ura3, Aro7 and Trp3 knockout. The engineered strain synthesized 45.40 ± 0.28 μg/L 2-HTA at 36 h in the CO2 environment. CONCLUSIONS De novo synthesis of 2-HTA has been achieved, using glucose as a raw material to generate shikimic acid, chorismic acid, and 3-HBA, and finally 2-HTA. We demonstrate the strong potential of hydroxybenzoate (de)carboxylase to produce terephthalic acid and its derivatives with CO2 fixation.
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Affiliation(s)
- Yali Zhou
- National Energy R&D Center for Biorefnery, Beijing Key Lab of Bioprocess, College of Life Science and Technology, Beijing University of Chemical Technology, No. 15 North 3Rd Ring Rd East, Beijing, 100029, People's Republic of China
| | - Shiding Zhang
- National Energy R&D Center for Biorefnery, Beijing Key Lab of Bioprocess, College of Life Science and Technology, Beijing University of Chemical Technology, No. 15 North 3Rd Ring Rd East, Beijing, 100029, People's Republic of China
| | - Shiming Huang
- National Energy R&D Center for Biorefnery, Beijing Key Lab of Bioprocess, College of Life Science and Technology, Beijing University of Chemical Technology, No. 15 North 3Rd Ring Rd East, Beijing, 100029, People's Republic of China
| | - Xuanhe Fan
- National Energy R&D Center for Biorefnery, Beijing Key Lab of Bioprocess, College of Life Science and Technology, Beijing University of Chemical Technology, No. 15 North 3Rd Ring Rd East, Beijing, 100029, People's Republic of China
| | - Haijia Su
- National Energy R&D Center for Biorefnery, Beijing Key Lab of Bioprocess, College of Life Science and Technology, Beijing University of Chemical Technology, No. 15 North 3Rd Ring Rd East, Beijing, 100029, People's Republic of China
| | - Tianwei Tan
- National Energy R&D Center for Biorefnery, Beijing Key Lab of Bioprocess, College of Life Science and Technology, Beijing University of Chemical Technology, No. 15 North 3Rd Ring Rd East, Beijing, 100029, People's Republic of China.
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3
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Bierbaumer S, Nattermann M, Schulz L, Zschoche R, Erb TJ, Winkler CK, Tinzl M, Glueck SM. Enzymatic Conversion of CO 2: From Natural to Artificial Utilization. Chem Rev 2023; 123:5702-5754. [PMID: 36692850 PMCID: PMC10176493 DOI: 10.1021/acs.chemrev.2c00581] [Citation(s) in RCA: 28] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Indexed: 01/25/2023]
Abstract
Enzymatic carbon dioxide fixation is one of the most important metabolic reactions as it allows the capture of inorganic carbon from the atmosphere and its conversion into organic biomass. However, due to the often unfavorable thermodynamics and the difficulties associated with the utilization of CO2, a gaseous substrate that is found in comparatively low concentrations in the atmosphere, such reactions remain challenging for biotechnological applications. Nature has tackled these problems by evolution of dedicated CO2-fixing enzymes, i.e., carboxylases, and embedding them in complex metabolic pathways. Biotechnology employs such carboxylating and decarboxylating enzymes for the carboxylation of aromatic and aliphatic substrates either by embedding them into more complex reaction cascades or by shifting the reaction equilibrium via reaction engineering. This review aims to provide an overview of natural CO2-fixing enzymes and their mechanistic similarities. We also discuss biocatalytic applications of carboxylases and decarboxylases for the synthesis of valuable products and provide a separate summary of strategies to improve the efficiency of such processes. We briefly summarize natural CO2 fixation pathways, provide a roadmap for the design and implementation of artificial carbon fixation pathways, and highlight examples of biocatalytic cascades involving carboxylases. Additionally, we suggest that biochemical utilization of reduced CO2 derivates, such as formate or methanol, represents a suitable alternative to direct use of CO2 and provide several examples. Our discussion closes with a techno-economic perspective on enzymatic CO2 fixation and its potential to reduce CO2 emissions.
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Affiliation(s)
- Sarah Bierbaumer
- Institute
of Chemistry, University of Graz, NAWI Graz, Heinrichstraße 28, 8010 Graz, Austria
| | - Maren Nattermann
- Department
of Biochemistry and Synthetic Metabolism, Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch Straße 10, 35043 Marburg, Germany
| | - Luca Schulz
- Department
of Biochemistry and Synthetic Metabolism, Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch Straße 10, 35043 Marburg, Germany
| | | | - Tobias J. Erb
- Department
of Biochemistry and Synthetic Metabolism, Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch Straße 10, 35043 Marburg, Germany
| | - Christoph K. Winkler
- Institute
of Chemistry, University of Graz, NAWI Graz, Heinrichstraße 28, 8010 Graz, Austria
| | - Matthias Tinzl
- Department
of Biochemistry and Synthetic Metabolism, Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch Straße 10, 35043 Marburg, Germany
| | - Silvia M. Glueck
- Institute
of Chemistry, University of Graz, NAWI Graz, Heinrichstraße 28, 8010 Graz, Austria
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4
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A Combined Computational–Experimental Study on the Substrate Binding and Reaction Mechanism of Salicylic Acid Decarboxylase. Catalysts 2022. [DOI: 10.3390/catal12121577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Salicylic acid decarboxylase (SDC) from the amidohydrolase superfamily (AHS) catalyzes the reversible decarboxylation of salicylic acid to form phenol. In this study, the substrate binding mode and reaction mechanism of SDC were investigated using computational and crystallographic methods. Quantum chemical calculations show that the enzyme follows the general mechanism of AHS decarboxylases. Namely, the reaction begins with proton transfer from a metal-coordinated aspartic acid residue (Asp298 in SDC) to the C1 of salicylic acid, which is followed by the C–C bond cleavage, to generate the phenol product and release CO2. Interestingly, the calculations show that SDC is a Mg-dependent enzyme rather than the previously proposed Zn-dependent, and the substrate is shown to be bidentately coordinated to the metal center in the catalysis, which is also different from the previous proposal. These predictions are corroborated by the crystal structure of SDC solved in complex with the substrate analogue 2-nitrophenol. The mechanistic insights into SDC in the present study provide important information for the rational design of the enzyme.
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5
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Rawat A, Dhakla S, Lama P, Pal TK. Fixation of carbon dioxide to aryl/aromatic carboxylic acids. J CO2 UTIL 2022. [DOI: 10.1016/j.jcou.2022.101939] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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6
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Sarkar P, Das A, Ghosh S, Islam SM. Visible Light‐Driven Carboxylation of Olefins by Using 2D Metal‐Free Covalent Organic Framework asIntrinsicPhotocatalyst: A Sustainable Approach for CO2 Utilization. ChemCatChem 2022. [DOI: 10.1002/cctc.202200186] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
| | - Anjan Das
- University of Kalyani Chemistry INDIA
| | | | - Sk. Manirul Islam
- University of Kalyani Department of Chemistry Kalyani Ghoshpara 741235 Kalyani INDIA
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7
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Křen V, Kroutil W, Hall M. A Career in Biocatalysis: Kurt Faber. ACS Catal 2022. [DOI: 10.1021/acscatal.2c00579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Vladimir Křen
- Institute of Microbiology, Czech Academy of Sciences, Laboratory of Biotransformation, 14220 Prague, Czech Republic
| | - Wolfgang Kroutil
- Institute of Chemistry, University of Graz, 8010 Graz, Austria
- Field of Excellence BioHealth, University of Graz, 8010 Graz, Austria
- BioTechMed, University of Graz, 8010 Graz, Austria
| | - Mélanie Hall
- Institute of Chemistry, University of Graz, 8010 Graz, Austria
- Field of Excellence BioHealth, University of Graz, 8010 Graz, Austria
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8
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Hong Y, Zeng AP. Biosynthesis Based on One-Carbon Mixotrophy. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2022; 180:351-371. [DOI: 10.1007/10_2021_198] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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9
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The Use of CO2 in the Production of Bioplastics for an Even Greener Chemistry. SUSTAINABILITY 2021. [DOI: 10.3390/su132011278] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
The high life expectancy of the world population provokes increase in demand for food and energy. As a result, the intense industrialization and the application of fossil sources is responsible for high levels of CO2 emission and waste generation. To mitigate the CO2 emission a practical solution at the very short term is urgently needed. The capture of CO2 and its application in chemical processes for the valorization of residual biomass are of great importance nowadays. The application of CO2 in the selective carboxylation of furoic acid for the production of 2,5-furandicarboxylic acid (FDCA), a bio-based monomer, has been an important step towards obtaining biopolymers to replace petroleum-based plastics such as polyethylene terephthalate (PET). In this project report, we discuss on the current challenges for obtaining the 2,5-FDCA precursor from the furfural in two main routes involving oxidation and carboxylation via heterogeneous catalysis. We present the main objectives and discuss the importance of this research for the development of more sustainable processes.
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10
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Sheng X, Himo F. Mechanisms of metal-dependent non-redox decarboxylases from quantum chemical calculations. Comput Struct Biotechnol J 2021; 19:3176-3186. [PMID: 34141138 PMCID: PMC8187880 DOI: 10.1016/j.csbj.2021.05.044] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Revised: 05/24/2021] [Accepted: 05/24/2021] [Indexed: 11/18/2022] Open
Abstract
Quantum chemical calculations are today an extremely valuable tool for studying enzymatic reaction mechanisms. In this mini-review, we summarize our recent work on several metal-dependent decarboxylases, where we used the so-called cluster approach to decipher the details of the reaction mechanisms, including elucidation of the identity of the metal cofactors and the origins of substrate specificity. Decarboxylases are of growing potential for biocatalytic applications, as they can be used in the synthesis of novel compounds of, e.g., pharmaceutical interest. They can also be employed in the reverse direction, providing a strategy to synthesize value‐added chemicals by CO2 fixation. A number of non-redox metal-dependent decarboxylases from the amidohydrolase superfamily have been demonstrated to have promiscuous carboxylation activities and have attracted great attention in the recent years. The computational mechanistic studies provide insights that are important for the further modification and utilization of these enzymes in industrial processes. The discussed enzymes are: 5‐carboxyvanillate decarboxylase, γ‐resorcylate decarboxylase, 2,3‐dihydroxybenzoic acid decarboxylase, and iso-orotate decarboxylase.
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Key Words
- 2,3-DHBD, 2,3‐dihydroxybenzoic acid decarboxylase
- 2,6-DHBD, 2,6‐dihydroxybenzoic acid decarboxylase
- 2-NR, 2-nitroresorcinol
- 5-CV, 5-carboxyvanillate
- 5-NV, 5-nitrovanillate
- 5caU, 5-carboxyuracil
- AHS, amidohydrolase superfamily
- Biocatalysis
- Decarboxylase
- Density functional theory
- IDCase, iso-orotate decarboxylase
- LigW, 5‐carboxyvanillate decarboxylase
- MIMS, membrane inlet mass spectrometry
- QM/MM, quantum mechanics/molecular mechanics
- Reaction mechanism
- Transition state
- γ-RS, γ-resorcylate
- γ-RSD, γ‐resorcylate decarboxylase
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Affiliation(s)
- Xiang Sheng
- National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, and National Technology Innovation Center for Synthetic Biology, Tianjin 300308, PR China
| | - Fahmi Himo
- Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, SE-10691 Stockholm, Sweden
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11
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Programmable late-stage C−H bond functionalization enabled by integration of enzymes with chemocatalysis. Nat Catal 2021. [DOI: 10.1038/s41929-021-00603-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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12
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Aleku GA, Roberts GW, Titchiner GR, Leys D. Synthetic Enzyme-Catalyzed CO 2 Fixation Reactions. CHEMSUSCHEM 2021; 14:1781-1804. [PMID: 33631048 PMCID: PMC8252502 DOI: 10.1002/cssc.202100159] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Revised: 02/25/2021] [Indexed: 05/11/2023]
Abstract
In recent years, (de)carboxylases that catalyze reversible (de)carboxylation have been targeted for application as carboxylation catalysts. This has led to the development of proof-of-concept (bio)synthetic CO2 fixation routes for chemical production. However, further progress towards industrial application has been hampered by the thermodynamic constraint that accompanies fixing CO2 to organic molecules. In this Review, biocatalytic carboxylation methods are discussed with emphases on the diverse strategies devised to alleviate the inherent thermodynamic constraints and their application in synthetic CO2 -fixation cascades.
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Affiliation(s)
- Godwin A. Aleku
- Department of BiochemistryUniversity of Cambridge80 Tennis Court RoadCambridgeCB2 1GAUK
| | - George W. Roberts
- Manchester Institute of BiotechnologyDepartment of ChemistryUniversity of Manchester131 Princess StreetManchesterM1 7DNUK
| | - Gabriel R. Titchiner
- Manchester Institute of BiotechnologyDepartment of ChemistryUniversity of Manchester131 Princess StreetManchesterM1 7DNUK
| | - David Leys
- Manchester Institute of BiotechnologyDepartment of ChemistryUniversity of Manchester131 Princess StreetManchesterM1 7DNUK
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13
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Abstract
2,5-furandicarboxylic acid (2,5-FDCA) is a biomass derivate of high importance that is used as a building block in the synthesis of green polymers such as poly(ethylene furandicarboxylate) (PEF). PEF is presumed to be an ideal substitute for the predominant polymer in industry, the poly(ethylene terephthalate) (PET). Current routes for 2,5-FDCA synthesis require 5-hydroxymethylfurfural (HMF) as a reactant, which generates undesirable co-products due to the complicated oxidation step. Therefore, direct CO2 carboxylation of furoic acid salts (FA, produced from furfural, derivate of inedible lignocellulosic biomass) to 2,5-FDCA is potentially a good alternative. Herein, we present the primary results obtained on the carboxylation reaction of potassium 2-furoate (K2F) to synthesize 2,5-FDCA, using heterogeneous catalysts. An experimental setup was firstly validated, and then several operation conditions were optimized, using heterogeneous catalysts instead of the semi-heterogeneous counterparts (molten salts). Ag/SiO2 catalyst showed interesting results regarding the K2F conversion and space–time yield of 2,5-FDCA.
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14
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Ohde D, Thomas B, Bubenheim P, Liese A. Enhanced CO2 fixation in the biocatalytic carboxylation of resorcinol: Utilization of amines for amine scrubbing and in situ product precipitation. Biochem Eng J 2021. [DOI: 10.1016/j.bej.2020.107825] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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15
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Marshall JR, Mangas-Sanchez J, Turner NJ. Expanding the synthetic scope of biocatalysis by enzyme discovery and protein engineering. Tetrahedron 2021. [DOI: 10.1016/j.tet.2021.131926] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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16
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Abstract
Nowadays, biocatalysts have received much more attention in chemistry regarding their potential to enable high efficiency, high yield, and eco-friendly processes for a myriad of applications. Nature’s vast repository of catalysts has inspired synthetic chemists. Furthermore, the revolutionary technologies in bioengineering have provided the fast discovery and evolution of enzymes that empower chemical synthesis. This article attempts to deliver a comprehensive overview of the last two decades of investigation into enzymatic reactions and highlights the effective performance progress of bio-enzymes exploited in organic synthesis. Based on the types of enzymatic reactions and enzyme commission (E.C.) numbers, the enzymes discussed in the article are classified into oxidoreductases, transferases, hydrolases, and lyases. These applications should provide us with some insight into enzyme design strategies and molecular mechanisms.
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17
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Abstract
Microbial lipases represent one of the most important groups of biotechnological biocatalysts. However, the high-level production of lipases requires an understanding of the molecular mechanisms of gene expression, folding, and secretion processes. Stable, selective, and productive lipase is essential for modern chemical industries, as most lipases cannot work in different process conditions. However, the screening and isolation of a new lipase with desired and specific properties would be time consuming, and costly, so researchers typically modify an available lipase with a certain potential for minimizing cost. Improving enzyme properties is associated with altering the enzymatic structure by changing one or several amino acids in the protein sequence. This review detailed the main sources, classification, structural properties, and mutagenic approaches, such as rational design (site direct mutagenesis, iterative saturation mutagenesis) and direct evolution (error prone PCR, DNA shuffling), for achieving modification goals. Here, both techniques were reviewed, with different results for lipase engineering, with a particular focus on improving or changing lipase specificity. Changing the amino acid sequences of the binding pocket or lid region of the lipase led to remarkable enzyme substrate specificity and enantioselectivity improvement. Site-directed mutagenesis is one of the appropriate methods to alter the enzyme sequence, as compared to random mutagenesis, such as error-prone PCR. This contribution has summarized and evaluated several experimental studies on modifying the substrate specificity of lipases.
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18
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Song M, Zhang X, Liu W, Feng J, Cui Y, Yao P, Wang M, Guo RT, Wu Q, Zhu D. 2,3-Dihydroxybenzoic Acid Decarboxylase from Fusarium oxysporum: Crystal Structures and Substrate Recognition Mechanism. Chembiochem 2020; 21:2950-2956. [PMID: 32421914 DOI: 10.1002/cbic.202000244] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Revised: 05/17/2020] [Indexed: 12/17/2022]
Abstract
A 2,3-dihydroxybenzoic acid decarboxylase from Fusarium oxysporum (2,3-DHBD_Fo) has a relatively high catalytic efficiency for the decarboxylation of 2,3-dihydroxybenzoic acid (DHBA) and carboxylation of catechol, thus it has a different substrate spectrum from other benzoic acid decarboxylases. We have determined the structures of 2,3-DHBD_Fo in its apo form and complexes with catechol or 2,5-dihydroxybenzoic acid at 1.55, 1.97, and 2.45 Å resolution, respectively. The crystal structures of 2,3-DHBD_Fo show that the enzyme exists as a homotetramer, and each active center has a Zn2+ ion coordinated by E8, H167, D291 and three water molecules. This is different from 2,6-DHBD from Rhizobium sporomusa, in which the Zn2+ ion is also coordinated with H10. Surprisingly, mutation of A10 of 2,3-DHBD_Fo to His resulted in almost complete loss of the enzyme activity. Enzyme-substrate docking and site-directed mutation studies indicate that residue R233Δ interacts with the 3-hydroxy group of 2,3-DHBA, and plays an important role in substrate recognition for this enzyme, thus revealing the molecular basis 2,3-dihydroxybenzoic acid decarboxylase.
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Affiliation(s)
- Mengkun Song
- Key Laboratory of Industrial Fermentation Microbiology, Tianjin University of Science and Technology, Tianjin, 300457, P. R. China.,National Engineering Laboratory for Industrial Enzymes, Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin, 300308, P. R. China
| | - Xuemei Zhang
- Key Laboratory of Industrial Fermentation Microbiology, Tianjin University of Science and Technology, Tianjin, 300457, P. R. China.,National Engineering Laboratory for Industrial Enzymes, Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin, 300308, P. R. China
| | - Weidong Liu
- National Engineering Laboratory for Industrial Enzymes, Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin, 300308, P. R. China
| | - Jinghui Feng
- National Engineering Laboratory for Industrial Enzymes, Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin, 300308, P. R. China
| | - Yunfeng Cui
- National Engineering Laboratory for Industrial Enzymes, Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin, 300308, P. R. China
| | - Peiyuan Yao
- National Engineering Laboratory for Industrial Enzymes, Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin, 300308, P. R. China
| | - Min Wang
- Key Laboratory of Industrial Fermentation Microbiology, Tianjin University of Science and Technology, Tianjin, 300457, P. R. China
| | - Rey-Ting Guo
- National Engineering Laboratory for Industrial Enzymes, Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin, 300308, P. R. China
| | - Qiaqing Wu
- National Engineering Laboratory for Industrial Enzymes, Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin, 300308, P. R. China
| | - Dunming Zhu
- National Engineering Laboratory for Industrial Enzymes, Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin, 300308, P. R. China
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19
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Sheng X, Kazemi M, Planas F, Himo F. Modeling Enzymatic Enantioselectivity using Quantum Chemical Methodology. ACS Catal 2020. [DOI: 10.1021/acscatal.0c00983] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Xiang Sheng
- Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, Stockholm SE-106 91, Sweden
| | - Masoud Kazemi
- Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, Stockholm SE-106 91, Sweden
| | - Ferran Planas
- Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, Stockholm SE-106 91, Sweden
| | - Fahmi Himo
- Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, Stockholm SE-106 91, Sweden
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20
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Sadamitsu Y, Okumura A, Saito K, Yamada T. Kolbe-Schmitt type reaction under ambient conditions mediated by an organic base. Chem Commun (Camb) 2019; 55:9837-9840. [PMID: 31364638 DOI: 10.1039/c9cc04550c] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
The combined use of an organic base for resorcinols realized a Kolbe-Schmitt type reaction under ambient conditions. When resorcinols (3-hydroxyphenol derivatives) were treated with DBU under a carbon dioxide atmosphere, nucleophilic addition to carbon dioxide proceeded to afford the corresponding salicylic acid derivatives in high yields.
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Affiliation(s)
- Yuta Sadamitsu
- Department of Chemistry, Keio University, Hiyoshi, Kohoku-ku, Yokohama 223-8522, Japan.
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21
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Hong J, Li M, Zhang J, Sun B, Mo F. C-H Bond Carboxylation with Carbon Dioxide. CHEMSUSCHEM 2019; 12:6-39. [PMID: 30381905 DOI: 10.1002/cssc.201802012] [Citation(s) in RCA: 86] [Impact Index Per Article: 17.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2018] [Revised: 10/15/2018] [Indexed: 06/08/2023]
Abstract
Carbon dioxide is a nontoxic, renewable, and abundant C1 source, whereas C-H bond functionalization represents one of the most important approaches to the construction of carbon-carbon bonds and carbon-heteroatom bonds in an atom- and step-economical manner. Combining the chemical transformation of CO2 with C-H bond functionalization is of great importance in the synthesis of carboxylic acids and their derivatives. The contents of this Review are organized according to the type of C-H bond involved in carboxylation. The primary types of C-H bonds are as follows: C(sp)-H bonds of terminal alkynes, C(sp2 )-H bonds of (hetero)arenes, vinylic C(sp2 )-H bonds, the ipso-C(sp2 )-H bonds of the diazo group, aldehyde C(sp2 )-H bonds, α-C(sp3 )-H bonds of the carbonyl group, γ-C(sp3 )-H bonds of the carbonyl group, C(sp3 )-H bonds adjacent to nitrogen atoms, C(sp3 )-H bonds of o-alkyl phenyl ketones, allylic C(sp3 )-H bonds, C(sp3 )-H bonds of methane, and C(sp3 )-H bonds of halogenated aliphatic hydrocarbons. In addition, multicomponent reactions, tandem reactions, and key theoretical studies related to the carboxylation of C-H bonds are briefly summarized. Transition-metal-free, organocatalytic, electrochemical, and light-driven methods are highlighted.
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Affiliation(s)
- Junting Hong
- Department of Energy and Resources Engineering, College of Engineering, Peking University, No.5 Yiheyuan Road Haidian District, Beijing, 100871, PR China
| | - Man Li
- Department of Energy and Resources Engineering, College of Engineering, Peking University, No.5 Yiheyuan Road Haidian District, Beijing, 100871, PR China
| | - Jianning Zhang
- Department of Energy and Resources Engineering, College of Engineering, Peking University, No.5 Yiheyuan Road Haidian District, Beijing, 100871, PR China
| | - Beiqi Sun
- Department of Energy and Resources Engineering, College of Engineering, Peking University, No.5 Yiheyuan Road Haidian District, Beijing, 100871, PR China
| | - Fanyang Mo
- Department of Energy and Resources Engineering, College of Engineering, Peking University, No.5 Yiheyuan Road Haidian District, Beijing, 100871, PR China
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22
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Carboxylation of Hydroxyaromatic Compounds with HCO3− by Enzyme Catalysis: Recent Advances Open the Perspective for Valorization of Lignin-Derived Aromatics. Catalysts 2019. [DOI: 10.3390/catal9010037] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
Abstract
This review focuses on recent advances in the field of enzymatic carboxylation reactions of hydroxyaromatic compounds using HCO3− (as a CO2 source) to produce hydroxybenzoic and other phenolic acids in mild conditions with high selectivity and moderate to excellent yield. Nature offers an extensive portfolio of enzymes catalysing reversible decarboxylation of hydroxyaromatic acids, whose equilibrium can be pushed towards the side of the carboxylated products. Extensive structural and mutagenesis studies have allowed recent advances in the understanding of the reaction mechanism of decarboxylase enzymes, ultimately enabling an improved yield and expansion of the scope of the reaction. The topic is of particular relevance today as the scope of the carboxylation reactions can be extended to include lignin-related compounds in view of developing lignin biorefinery technology.
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23
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Rode HB, Lade DM, Grée R, Mainkar PS, Chandrasekhar S. Strategies towards the synthesis of anti-tuberculosis drugs. Org Biomol Chem 2019; 17:5428-5459. [DOI: 10.1039/c9ob00817a] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
In this report, we reviewed the strategies towards the synthesis of anti-tuberculosis drugs. They include semisynthetic approaches, resolution based strategies, microbial transformations, solid phase synthesis, and asymmetric synthesis.
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Affiliation(s)
- Haridas B. Rode
- Department of Organic Synthesis and Process Chemistry
- CSIR-Indian Institute of Chemical Technology
- Hyderabad-500007
- India
- Academy of Scientific and Innovative Research (AcSIR)
| | - Dhanaji M. Lade
- Department of Organic Synthesis and Process Chemistry
- CSIR-Indian Institute of Chemical Technology
- Hyderabad-500007
- India
- Academy of Scientific and Innovative Research (AcSIR)
| | - René Grée
- University of Rennes
- CNRS
- ISCR (Institut des Sciences Chimiques de Rennes)
- UMR 6226
- F-35000 Rennes
| | - Prathama S. Mainkar
- Department of Organic Synthesis and Process Chemistry
- CSIR-Indian Institute of Chemical Technology
- Hyderabad-500007
- India
- Academy of Scientific and Innovative Research (AcSIR)
| | - Srivari Chandrasekhar
- Department of Organic Synthesis and Process Chemistry
- CSIR-Indian Institute of Chemical Technology
- Hyderabad-500007
- India
- Academy of Scientific and Innovative Research (AcSIR)
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24
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Sheng X, Plasch K, Payer SE, Ertl C, Hofer G, Keller W, Braeuer S, Goessler W, Glueck SM, Himo F, Faber K. Reaction Mechanism and Substrate Specificity of Iso-orotate Decarboxylase: A Combined Theoretical and Experimental Study. Front Chem 2018; 6:608. [PMID: 30619817 PMCID: PMC6305744 DOI: 10.3389/fchem.2018.00608] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2018] [Accepted: 11/27/2018] [Indexed: 01/04/2023] Open
Abstract
The C-C bond cleavage catalyzed by metal-dependent iso-orotate decarboxylase (IDCase) from the thymidine salvage pathway is of interest for the elucidation of a (hypothetical) DNA demethylation pathway. IDCase appears also as a promising candidate for the synthetic regioselective carboxylation of N-heteroaromatics. Herein, we report a joint experimental-theoretical study to gain insights into the metal identity, reaction mechanism, and substrate specificity of IDCase. In contrast to previous assumptions, the enzyme is demonstrated by ICPMS/MS measurements to contain a catalytically relevant Mn2+ rather than Zn2+. Quantum chemical calculations revealed that decarboxylation of the natural substrate (5-carboxyuracil) proceeds via a (reverse) electrophilic aromatic substitution with formation of CO2. The occurrence of previously proposed tetrahedral carboxylate intermediates with concomitant formation of HCO3- could be ruled out on the basis of prohibitively high energy barriers. In contrast to related o-benzoic acid decarboxylases, such as γ-resorcylate decarboxylase and 5-carboxyvanillate decarboxylase, which exhibit a relaxed substrate tolerance for phenolic acids, IDCase shows high substrate fidelity. Structural and energy comparisons suggest that this is caused by a unique hydrogen bonding of the heterocyclic natural substrate (5-carboxyuracil) to the surrounding residues. Analysis of calculated energies also shows that the reverse carboxylation of uracil is impeded by a strongly disfavored uphill reaction.
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Affiliation(s)
- Xiang Sheng
- Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, Stockholm, Sweden
| | - Katharina Plasch
- Institute of Chemistry, Organic & Bioorganic Chemistry, University of Graz, Graz, Austria
| | - Stefan E Payer
- Institute of Chemistry, Organic & Bioorganic Chemistry, University of Graz, Graz, Austria
| | - Claudia Ertl
- Institute of Chemistry, Organic & Bioorganic Chemistry, University of Graz, Graz, Austria
| | - Gerhard Hofer
- Institute of Molecular Biosciences, University of Graz, Graz, Austria
| | - Walter Keller
- Institute of Molecular Biosciences, University of Graz, Graz, Austria
| | - Simone Braeuer
- Institute of Chemistry, Analytical Chemistry, University of Graz, Graz, Austria
| | - Walter Goessler
- Institute of Chemistry, Analytical Chemistry, University of Graz, Graz, Austria
| | - Silvia M Glueck
- Institute of Chemistry, Organic & Bioorganic Chemistry, University of Graz, Graz, Austria.,Austrian Centre of Industrial Biotechnology (ACIB GmbH), Graz, Austria
| | - Fahmi Himo
- Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, Stockholm, Sweden
| | - Kurt Faber
- Institute of Chemistry, Organic & Bioorganic Chemistry, University of Graz, Graz, Austria
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25
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Selective carboxylation of substituted phenols with engineered Escherichia coli whole-cells. Tetrahedron Lett 2018. [DOI: 10.1016/j.tetlet.2018.09.019] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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26
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Aleku GA, Prause C, Bradshaw‐Allen RT, Plasch K, Glueck SM, Bailey SS, Payne KAP, Parker DA, Faber K, Leys D. Terminal Alkenes from Acrylic Acid Derivatives via Non-Oxidative Enzymatic Decarboxylation by Ferulic Acid Decarboxylases. ChemCatChem 2018; 10:3736-3745. [PMID: 30333895 PMCID: PMC6175315 DOI: 10.1002/cctc.201800643] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2018] [Indexed: 11/26/2022]
Abstract
Fungal ferulic acid decarboxylases (FDCs) belong to the UbiD-family of enzymes and catalyse the reversible (de)carboxylation of cinnamic acid derivatives through the use of a prenylated flavin cofactor. The latter is synthesised by the flavin prenyltransferase UbiX. Herein, we demonstrate the applicability of FDC/UbiX expressing cells for both isolated enzyme and whole-cell biocatalysis. FDCs exhibit high activity with total turnover numbers (TTN) of up to 55000 and turnover frequency (TOF) of up to 370 min-1. Co-solvent compatibility studies revealed FDC's tolerance to some organic solvents up 20 % v/v. Using the in-vitro (de)carboxylase activity of holo-FDC as well as whole-cell biocatalysts, we performed a substrate profiling study of three FDCs, providing insights into structural determinants of activity. FDCs display broad substrate tolerance towards a wide range of acrylic acid derivatives bearing (hetero)cyclic or olefinic substituents at C3 affording conversions of up to >99 %. The synthetic utility of FDCs was demonstrated by a preparative-scale decarboxylation.
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Affiliation(s)
- Godwin A. Aleku
- Manchester Institute of BiotechnologySchool of ChemistryUniversity of Manchester131 Princess StreetManchesterM1 7DNUnited Kingdom
| | - Christoph Prause
- Department of ChemistryUniversity of GrazHeinrichstrasse 288010GrazAustria).
| | - Ruth T. Bradshaw‐Allen
- Manchester Institute of BiotechnologySchool of ChemistryUniversity of Manchester131 Princess StreetManchesterM1 7DNUnited Kingdom
| | - Katharina Plasch
- Department of ChemistryUniversity of GrazHeinrichstrasse 288010GrazAustria).
| | - Silvia M. Glueck
- Austrian Centre of Industrial Biotechnology (ACIB)8010GrazAustria) c/o
- Department of ChemistryUniversity of GrazHeinrichstrasse 288010GrazAustria).
| | - Samuel S. Bailey
- Manchester Institute of BiotechnologySchool of ChemistryUniversity of Manchester131 Princess StreetManchesterM1 7DNUnited Kingdom
| | - Karl A. P. Payne
- Manchester Institute of BiotechnologySchool of ChemistryUniversity of Manchester131 Princess StreetManchesterM1 7DNUnited Kingdom
| | - David A. Parker
- Innovation/BiodomainShell International Exploration and Production Inc.Westhollow Technology CenterHoustonUSA
| | - Kurt Faber
- Department of ChemistryUniversity of GrazHeinrichstrasse 288010GrazAustria).
| | - David Leys
- Manchester Institute of BiotechnologySchool of ChemistryUniversity of Manchester131 Princess StreetManchesterM1 7DNUnited Kingdom
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27
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Meyer LE, Plasch K, Kragl U, von Langermann J. Adsorbent-Based Downstream-Processing of the Decarboxylase-Based Synthesis of 2,6-Dihydroxy-4-methylbenzoic Acid. Org Process Res Dev 2018. [DOI: 10.1021/acs.oprd.8b00104] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Lars-Erik Meyer
- University of Rostock, Institute of Chemistry, Albert-Einstein-Str. 3a, 18051 Rostock, Germany
| | - Katharina Plasch
- University of Graz, Organic & Bioorganic Chemistry, Heinrichstrasse 28, A-8010 Graz, Austria
| | - Udo Kragl
- University of Rostock, Institute of Chemistry, Albert-Einstein-Str. 3a, 18051 Rostock, Germany
- Faculty for Interdisciplinary Research, Department Life, Light and Matter, University of Rostock, 18051 Rostock, Germany
| | - Jan von Langermann
- University of Rostock, Institute of Chemistry, Albert-Einstein-Str. 3a, 18051 Rostock, Germany
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28
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Plasch K, Hofer G, Keller W, Hay S, Heyes DJ, Dennig A, Glueck SM, Faber K. Pressurized CO 2 as a carboxylating agent for the biocatalytic ortho-carboxylation of resorcinol. GREEN CHEMISTRY : AN INTERNATIONAL JOURNAL AND GREEN CHEMISTRY RESOURCE : GC 2018; 20:1754-1759. [PMID: 29780282 PMCID: PMC5942041 DOI: 10.1039/c8gc00008e] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/01/2018] [Accepted: 03/08/2018] [Indexed: 05/25/2023]
Abstract
The utilization of gaseous carbon dioxide instead of bicarbonate would greatly facilitate process development for enzyme catalyzed carboxylations on a large scale. As a proof-of-concept, 1,3-dihydroxybenzene (resorcinol) was carboxylated in the ortho-position using pressurized CO2 (∼30-40 bar) catalyzed by ortho-benzoic acid decarboxylases with up to 68% conversion. Optimization studies revealed tight pH-control and enzyme stability as the most important determinants.
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Affiliation(s)
- Katharina Plasch
- Department of Chemistry , Organic & Bioorganic Chemistry , University of Graz , Heinrichstrasse 28 , 8010 Graz , Austria . ;
| | - Gerhard Hofer
- Institute of Molecular Biosciences , University of Graz , Humboldstrasse 50 , 8010 Graz , Austria
| | - Walter Keller
- Institute of Molecular Biosciences , University of Graz , Humboldstrasse 50 , 8010 Graz , Austria
| | - Sam Hay
- Manchester Institute of Biotechnology , University of Manchester , 131 Princess Street , Manchester M1 7DN , UK
| | - Derren J Heyes
- Manchester Institute of Biotechnology , University of Manchester , 131 Princess Street , Manchester M1 7DN , UK
| | - Alexander Dennig
- Institute of Biotechnology and Biochemical Engineering , Graz University of Technology , Petersgasse 12 , 8010 Graz , Austria
| | - Silvia M Glueck
- Department of Chemistry , Organic & Bioorganic Chemistry , University of Graz , Heinrichstrasse 28 , 8010 Graz , Austria . ;
- Austrian Centre of Industrial Biotechnology (ACIB) , Petersgasse 14 , 8010 Graz , Austria
| | - Kurt Faber
- Department of Chemistry , Organic & Bioorganic Chemistry , University of Graz , Heinrichstrasse 28 , 8010 Graz , Austria . ;
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29
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Payer SE, Pollak H, Glueck SM, Faber K. A Rational Active-Site Redesign Converts a Decarboxylase into a C=C Hydratase: "Tethered Acetate" Supports Enantioselective Hydration of 4-Hydroxystyrenes. ACS Catal 2018. [PMID: 29527405 PMCID: PMC5838639 DOI: 10.1021/acscatal.7b04293] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The promiscuous regio- and stereoselective hydration of 4-hydroxystyrenes catalyzed by ferulic acid decarboxylase from Enterobacter sp. (FDC_Es) depends on bicarbonate bound in the active site, which serves as a proton relay activating a water molecule for nucleophilic attack on a quinone methide electrophile. This "cofactor" is crucial for achieving improved conversions and high stereoselectivities for (S)-configured benzylic alcohol products. Similar effects were observed with simple aliphatic carboxylic acids as additives. A rational redesign of the active site by replacing the bicarbonate or acetate "cofactor" with a newly introduced side-chain carboxylate from an adjacent amino acid yielded mutants that efficiently acted as C=C hydratases. A single-point mutation of valine 46 to glutamate or aspartate improved the hydration activity by 40% and boosted the stereoselectivity 39-fold in the absence of bicarbonate or acetate.
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Affiliation(s)
- Stefan E. Payer
- Austrian Centre of
Industrial Biotechnology and ‡Department of Chemistry, University of Graz, Heinrichstrasse 28/2, 8010 Graz, Austria
| | - Hannah Pollak
- Austrian Centre of
Industrial Biotechnology and ‡Department of Chemistry, University of Graz, Heinrichstrasse 28/2, 8010 Graz, Austria
| | - Silvia M. Glueck
- Austrian Centre of
Industrial Biotechnology and ‡Department of Chemistry, University of Graz, Heinrichstrasse 28/2, 8010 Graz, Austria
| | - Kurt Faber
- Austrian Centre of
Industrial Biotechnology and ‡Department of Chemistry, University of Graz, Heinrichstrasse 28/2, 8010 Graz, Austria
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30
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Zhang X, Ren J, Yao P, Gong R, Wang M, Wu Q, Zhu D. Biochemical characterization and substrate profiling of a reversible 2,3-dihydroxybenzoic acid decarboxylase for biocatalytic Kolbe-Schmitt reaction. Enzyme Microb Technol 2018; 113:37-43. [PMID: 29602385 DOI: 10.1016/j.enzmictec.2018.02.008] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Revised: 02/04/2018] [Accepted: 02/20/2018] [Indexed: 11/30/2022]
Abstract
Reversible benzoic acid decarboxylases are versatile biocatalysts by taking advantage of both decarboxylation and carboxylation reactions, especially for the biocatalytic Kolbe-Schmitt reaction. In the course of developing a benzoic acid decarboxylase tool-box, a putative benzoic acid decarboxylase gene from Fusarium oxysporum was heterologously over-expressed in Escherichia coli, the recombinant protein was purified and characterized. The purified enzyme exhibited relatively high catalytic efficiencies for the decarboxylation of 2, 3-dihydroxybenzoic acid and carboxylation of catechol (kcat/Km = 2.03 × 102 and 1.88 mM-1 min-1, respectively), and thus characterized as 2, 3-dihydroxybenzoic acid decarboxylase (2, 3-DHBD_Fo). The enzyme also catalyzed the decarboxylation of various substituted salicylic acids with different groups at varied positions except 5-position and the carboxylation of phenol and the substituted phenols. In a preparative reaction, catechol was carboxylated into 2, 3-dihydroxybenoic acid with 95% conversion by adding dodecyldimethylbenzylammonium chloride into the reaction system, and the product was isolated in 72% yield. These results demonstrate that 2, 3-DHBD_Fo is a valuable addition to the benzoic acid decarboxylase tool-box with potential practical applications.
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Affiliation(s)
- Xuemei Zhang
- Key Laboratory of Industrial Fermentation Microbiology, Ministry of Education, College of Biotechnology, Tianjin University of Science & Technology, Tianjin 300457, China; National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin, 300308, China
| | - Jie Ren
- National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin, 300308, China
| | - Peiyuan Yao
- National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin, 300308, China
| | - Rui Gong
- National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin, 300308, China
| | - Min Wang
- Key Laboratory of Industrial Fermentation Microbiology, Ministry of Education, College of Biotechnology, Tianjin University of Science & Technology, Tianjin 300457, China
| | - Qiaqing Wu
- National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin, 300308, China
| | - Dunming Zhu
- National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin, 300308, China.
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31
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Sheng X, Patskovsky Y, Vladimirova A, Bonanno JB, Almo SC, Himo F, Raushel FM. Mechanism and Structure of γ-Resorcylate Decarboxylase. Biochemistry 2018; 57:3167-3175. [PMID: 29283551 DOI: 10.1021/acs.biochem.7b01213] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
γ-Resorcylate decarboxylase (γ-RSD) has evolved to catalyze the reversible decarboxylation of 2,6-dihydroxybenzoate to resorcinol in a nonoxidative fashion. This enzyme is of significant interest because of its potential for the production of γ-resorcylate and other benzoic acid derivatives under environmentally sustainable conditions. Kinetic constants for the decarboxylation of 2,6-dihydroxybenzoate catalyzed by γ-RSD from Polaromonas sp. JS666 are reported, and the enzyme is shown to be active with 2,3-dihydroxybenzoate, 2,4,6-trihydroxybenzoate, and 2,6-dihydroxy-4-methylbenzoate. The three-dimensional structure of γ-RSD with the inhibitor 2-nitroresorcinol (2-NR) bound in the active site is reported. 2-NR is directly ligated to a Mn2+ bound in the active site, and the nitro substituent of the inhibitor is tilted significantly from the plane of the phenyl ring. The inhibitor exhibits a binding mode different from that of the substrate bound in the previously determined structure of γ-RSD from Rhizobium sp. MTP-10005. On the basis of the crystal structure of the enzyme from Polaromonas sp. JS666, complementary density functional calculations were performed to investigate the reaction mechanism. In the proposed reaction mechanism, γ-RSD binds 2,6-dihydroxybenzoate by direct coordination of the active site manganese ion to the carboxylate anion of the substrate and one of the adjacent phenolic oxygens. The enzyme subsequently catalyzes the transfer of a proton to C1 of γ-resorcylate prior to the actual decarboxylation step. The reaction mechanism proposed previously, based on the structure of γ-RSD from Rhizobium sp. MTP-10005, is shown to be associated with high energies and thus less likely to be correct.
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Affiliation(s)
- Xiang Sheng
- Department of Organic Chemistry, Arrhenius Laboratory , Stockholm University , SE-106 91 Stockholm , Sweden
| | - Yury Patskovsky
- Albert Einstein College of Medicine , 1300 Morris Park Avenue , Bronx , New York 10461 , United States
| | - Anna Vladimirova
- Department of Chemistry , Texas A&M University , College Station , Texas 77842 , United States
| | - Jeffrey B Bonanno
- Albert Einstein College of Medicine , 1300 Morris Park Avenue , Bronx , New York 10461 , United States
| | - Steven C Almo
- Albert Einstein College of Medicine , 1300 Morris Park Avenue , Bronx , New York 10461 , United States
| | - Fahmi Himo
- Department of Organic Chemistry, Arrhenius Laboratory , Stockholm University , SE-106 91 Stockholm , Sweden
| | - Frank M Raushel
- Department of Chemistry , Texas A&M University , College Station , Texas 77842 , United States
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32
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Pesci L, Gurikov P, Liese A, Kara S. Amine-Mediated Enzymatic Carboxylation of Phenols Using CO 2 as Substrate Increases Equilibrium Conversions and Reaction Rates. Biotechnol J 2017; 12. [PMID: 28862371 DOI: 10.1002/biot.201700332] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2017] [Revised: 08/18/2017] [Indexed: 01/08/2023]
Abstract
A variety of strategies is applied to alleviate thermodynamic and kinetic limitations in biocatalytic carboxylation of metabolites in vivo. A key feature to consider in enzymatic carboxylations is the nature of the cosubstrate: CO2 or its hydrated form, bicarbonate. The substrate binding and activation mechanism determine what the actual carboxylation agent is. Dihydroxybenzoic acid (de)carboxylases catalyze the reversible regio-selective ortho-(de)carboxylation of phenolics. These enzymes have attracted considerable attention in the last 10 years due to their potential in substituting harsh conditions typical of chemical carboxylations (100-200 °C, 5-100 bar) with, ideally, greener ones (20-40 °C, 1 bar). They are reported to use bicarbonate as substrate, needed in large excess to overcome thermodynamic and kinetic limitations. Therefore, CO2 can be used as substrate by these enzymes only if it is converted into bicarbonate in situ. In this contribution, we report the simultaneous amine-mediated conversion of CO2 into bicarbonate and the ortho-carboxylation of different phenolic molecules catalyzed by 2,3-dihydroxybenzoic acid (de)carboxylase from Aspergillus oryzae. Our results show that under the newly developed conditions a significant thermodynamic (up to twofold increase in conversion) and kinetic improvement (up to approx. fivefold increase in rate) of the biocatalytic carboxylation of catechol is achieved.
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Affiliation(s)
- Lorenzo Pesci
- Institute of Technical Biocatalysis, Hamburg University of Technology, Denickestr. 15, Hamburg 21073, Germany
| | - Pavel Gurikov
- Institute of Thermal Separation Processes, Hamburg University of Technology, Hamburg, Germany
| | - Andreas Liese
- Institute of Technical Biocatalysis, Hamburg University of Technology, Denickestr. 15, Hamburg 21073, Germany
| | - Selin Kara
- Institute of Technical Biocatalysis, Hamburg University of Technology, Denickestr. 15, Hamburg 21073, Germany
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33
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Luo J, Larrosa I. C-H Carboxylation of Aromatic Compounds through CO 2 Fixation. CHEMSUSCHEM 2017; 10:3317-3332. [PMID: 28722818 PMCID: PMC5601192 DOI: 10.1002/cssc.201701058] [Citation(s) in RCA: 145] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2017] [Revised: 07/19/2017] [Indexed: 05/24/2023]
Abstract
Carbon dioxide (CO2 ) represents the most abundant and accessible carbon source on Earth. Thus the ability to transform CO2 into valuable commodity chemicals through the construction of C-C bonds is an invaluable strategy. Carboxylic acids and derivatives, the main products obtained by carboxylation of carbon nucleophiles by reaction of CO2 , have wide application in pharmaceuticals and advanced materials. Among the variety of carboxylation methods currently available, the direct carboxylation of C-H bonds with CO2 has attracted much attention owing to advantages from a step- and atom-economical point of view. In particular, the prevalence of (hetero)aromatic carboxylic acids and derivatives among biologically active compounds has led to significant interest in the development of methods for their direct carboxylation from CO2 . Herein, the latest achievements in the area of direct C-H carboxylation of (hetero)aromatic compounds with CO2 will be discussed.
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Affiliation(s)
- Junfei Luo
- School of Materials Science and Chemical EngineeringNingbo UniversityNingbo315211P.R. China
| | - Igor Larrosa
- School of ChemistryUniversity of ManchesterOxford RoadManchesterM13 9PLUnited Kingdom
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Abstract
The quantum chemical cluster approach is a powerful method for investigating enzymatic reactions. Over the past two decades, a large number of highly diverse systems have been studied and a great wealth of mechanistic insight has been developed using this technique. This Perspective reviews the current status of the methodology. The latest technical developments are highlighted, and challenges are discussed. Some recent applications are presented to illustrate the capabilities and progress of this approach, and likely future directions are outlined.
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Affiliation(s)
- Fahmi Himo
- Arrhenius Laboratory, Department of Organic Chemistry, Stockholm University , SE-106 91 Stockholm, Sweden
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35
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Payer SE, Sheng X, Pollak H, Wuensch C, Steinkellner G, Himo F, Glueck SM, Faber K. Exploring the Catalytic Promiscuity of Phenolic Acid Decarboxylases: Asymmetric, 1,6-Conjugate Addition of Nucleophiles Across 4-Hydroxystyrene. Adv Synth Catal 2017; 359:2066-2075. [PMID: 28713228 PMCID: PMC5488193 DOI: 10.1002/adsc.201700247] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2017] [Revised: 04/02/2017] [Indexed: 01/29/2023]
Abstract
The catalytic promiscuity of a ferulic acid decarboxylase from Enterobacter sp. (FDC_Es) and phenolic acid decarboxylases (PADs) for the asymmetric conjugate addition of water across the C=C bond of hydroxystyrenes was extended to the N‐, C‐ and S‐nucleophiles methoxyamine, cyanide and propanethiol to furnish the corresponding addition products in up to 91% ee. The products obtained from the biotransformation employing the most suitable enzyme/nucleophile pairs were isolated and characterized after optimizing the reaction conditions. Finally, a mechanistic rationale supported by quantum mechanical calculations for the highly (S)‐selective addition of cyanide is proposed. ![]()
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Affiliation(s)
- Stefan E Payer
- Department of Chemistry University of Graz Heinrichstrasse 28, A-8010 Graz Austria
| | - Xiang Sheng
- Arrhenius Laboratory Department of Organic Chemistry Stockholm University SE-106 91 Stockholm Sweden
| | - Hannah Pollak
- Department of Chemistry University of Graz Heinrichstrasse 28, A-8010 Graz Austria
| | - Christiane Wuensch
- Austrian Centre of Industrial Biotechnology (ACIB) c/o Department of Chemistry University of Graz Heinrichstrasse 28, A-8010 Graz Austria.,Department of Chemistry University of Graz Heinrichstrasse 28, A-8010 Graz Austria
| | - Georg Steinkellner
- Austrian Centre of Industrial Biotechnology (ACIB) c/o Department of Chemistry University of Graz Heinrichstrasse 28, A-8010 Graz Austria.,Center for Molecular Biosciences University of Graz Humboldtstrasse 508010 Graz Austria
| | - Fahmi Himo
- Arrhenius Laboratory Department of Organic Chemistry Stockholm University SE-106 91 Stockholm Sweden
| | - Silvia M Glueck
- Austrian Centre of Industrial Biotechnology (ACIB) c/o Department of Chemistry University of Graz Heinrichstrasse 28, A-8010 Graz Austria.,Department of Chemistry University of Graz Heinrichstrasse 28, A-8010 Graz Austria
| | - Kurt Faber
- Department of Chemistry University of Graz Heinrichstrasse 28, A-8010 Graz Austria
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36
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Recent Progress and Novel Applications in Enzymatic Conversion of Carbon Dioxide. ENERGIES 2017. [DOI: 10.3390/en10040473] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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37
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Plasch K, Resch V, Hitce J, Popłoński J, Faber K, Glueck SM. Regioselective Enzymatic Carboxylation of Bioactive (Poly)phenols. Adv Synth Catal 2017; 359:959-965. [PMID: 28450825 PMCID: PMC5396361 DOI: 10.1002/adsc.201601046] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2016] [Revised: 11/21/2016] [Indexed: 11/07/2022]
Abstract
In order to extend the applicability of the regioselective enzymatic carboxylation of phenols, the substrate scope of o-benzoic acid (de)carboxylases has been investigated towards complex molecules with an emphasis on flavouring agents and polyphenols possessing antioxidant properties. o-Hydroxycarboxylic acid products were obtained with perfect regioselectivity, in moderate to excellent yields. The applicability of this method was proven by the regioselective bio-carboxylation of resveratrol on a preparative scale with 95% yield.
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Affiliation(s)
- Katharina Plasch
- Department of Chemistry, Organic & Bioorganic ChemistryUniversity of GrazHeinrichstrasse 28A-8010GrazAustria
| | - Verena Resch
- Department of Chemistry, Organic & Bioorganic ChemistryUniversity of GrazHeinrichstrasse 28A-8010GrazAustria
| | - Julien Hitce
- L'Oréal Research & Innovation30 bis rue Maurice Berteaux95500Le ThillayFrance
| | - Jarosław Popłoński
- Department of ChemistryWrocław University of Environmental and Life Sciencesul. C. K. Norwida 2550-375WrocławPoland
| | - Kurt Faber
- Department of Chemistry, Organic & Bioorganic ChemistryUniversity of GrazHeinrichstrasse 28A-8010GrazAustria
| | - Silvia M. Glueck
- Department of Chemistry, Organic & Bioorganic ChemistryUniversity of GrazHeinrichstrasse 28A-8010GrazAustria
- Austrian Centre of Industrial Biotechnology (ACIB)University of GrazHeinrichstrasse 28A-8010GrazAustria
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38
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Yuan Y, Chen C, Zeng C, Mousavi B, Chaemchuen S, Verpoort F. Carboxylation of Terminal Alkynes with Carbon Dioxide Catalyzed by an In Situ Ag2O/N-Heterocyclic Carbene Precursor System. ChemCatChem 2017. [DOI: 10.1002/cctc.201601379] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Ye Yuan
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing; Wuhan University of Technology; Wuhan 430070 P.R. China
- School of Material Science and Engineering; Wuhan University of Technology; Wuhan 430070 P.R. China
| | - Cheng Chen
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing; Wuhan University of Technology; Wuhan 430070 P.R. China
| | - Cheng Zeng
- School of Material Science and Engineering; Wuhan University of Technology; Wuhan 430070 P.R. China
| | - Bibimaryam Mousavi
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing; Wuhan University of Technology; Wuhan 430070 P.R. China
| | - Somboon Chaemchuen
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing; Wuhan University of Technology; Wuhan 430070 P.R. China
| | - Francis Verpoort
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing; Wuhan University of Technology; Wuhan 430070 P.R. China
- School of Material Science and Engineering; Wuhan University of Technology; Wuhan 430070 P.R. China
- National Research Tomsk Polytechnic University; Lenin Avenue 30 Tomsk 634050 Russian Federation
- Global Campus Songdo; Ghent University; 119 Songdomunhwa-Ro, Yeonsu-Gu Incheon Korea
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39
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Sheng X, Himo F. Theoretical Study of Enzyme Promiscuity: Mechanisms of Hydration and Carboxylation Activities of Phenolic Acid Decarboxylase. ACS Catal 2017. [DOI: 10.1021/acscatal.6b03249] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Xiang Sheng
- Department of Organic Chemistry,
Arrhenius Laboratory, Stockholm University, SE-10691 Stockholm, Sweden
| | - Fahmi Himo
- Department of Organic Chemistry,
Arrhenius Laboratory, Stockholm University, SE-10691 Stockholm, Sweden
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40
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Song CX, Chen P, Tang Y. Carboxylation of styrenes with CBr4and DMSO via cooperative photoredox and cobalt catalysis. RSC Adv 2017. [DOI: 10.1039/c6ra28744a] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Cooperative photoredox and cobalt catalyzed carboxylation of styrenes with CBr4to afford the corresponding α,β-unsaturated carboxylic acids has been realized through radical addition and Kornblum (DMSO) oxidation.
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Affiliation(s)
- Cai-xia Song
- School of Pharmaceutical Science and Technology
- Key Laboratory for Modern Drug Delivery & High-Efficiency
- Tianjin University
- Tianjin
- 300072 P. R. China
| | - Ping Chen
- Key Laboratory of Marine Drugs
- Chinese Ministry of Education
- School of Medicine and Pharmacy
- Ocean University of China
- Qingdao
| | - Yu Tang
- School of Pharmaceutical Science and Technology
- Key Laboratory for Modern Drug Delivery & High-Efficiency
- Tianjin University
- Tianjin
- 300072 P. R. China
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41
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Pesci L, Kara S, Liese A. Evaluation of the Substrate Scope of Benzoic Acid (De)carboxylases According to Chemical and Biochemical Parameters. Chembiochem 2016; 17:1845-1850. [PMID: 27505856 DOI: 10.1002/cbic.201600333] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2016] [Indexed: 11/06/2022]
Abstract
The enzymatic carboxylation of phenolic compounds has been attracting increasing interest in recent years, owing to its regioselectivity and technical potential as a biocatalytic equivalent for the Kolbe-Schmitt reaction. Mechanistically the reaction was demonstrated to occur through electrophilic aromatic substitution/water elimination with bicarbonate as a cosubstrate. The effects of the substituents on the phenolic ring have not yet been elucidated in detail, but this would give detailed insight into the substrate-activity relationship and would provide predictability for the acceptance of future substrates. In this report we show how the kinetic and (apparent) thermodynamic behavior can be explained through the evaluation of linear free energy relationships based on electronic, steric, and geometric parameters and through the consideration of enzyme-ligand interactions. Moreover, the similarity between the benzoic acid decarboxylases and the amidohydrolases superfamily is investigated, and promiscuous hydrolytic activity of the decarboxylase in the context of the hydrolysis of an activated ester bond has been established.
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Affiliation(s)
- Lorenzo Pesci
- Institute of Technical Biocatalysis, Hamburg University of Technology, Denickestrasse 15, 21073, Hamburg, Germany
| | - Selin Kara
- Institute of Technical Biocatalysis, Hamburg University of Technology, Denickestrasse 15, 21073, Hamburg, Germany
| | - Andreas Liese
- Institute of Technical Biocatalysis, Hamburg University of Technology, Denickestrasse 15, 21073, Hamburg, Germany.
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42
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Law BJC, Bennett MR, Thompson ML, Levy C, Shepherd SA, Leys D, Micklefield J. Effects of Active-Site Modification and Quaternary Structure on the Regioselectivity of Catechol-O-Methyltransferase. Angew Chem Int Ed Engl 2016; 55:2683-7. [PMID: 26797714 PMCID: PMC4770447 DOI: 10.1002/anie.201508287] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2015] [Indexed: 11/08/2022]
Abstract
Catechol‐O‐methyltransferase (COMT), an important therapeutic target in the treatment of Parkinson's disease, is also being developed for biocatalytic processes, including vanillin production, although lack of regioselectivity has precluded its more widespread application. By using structural and mechanistic information, regiocomplementary COMT variants were engineered that deliver either meta‐ or para‐methylated catechols. X‐ray crystallography further revealed how the active‐site residues and quaternary structure govern regioselectivity. Finally, analogues of AdoMet are accepted by the regiocomplementary COMT mutants and can be used to prepare alkylated catechols, including ethyl vanillin.
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Affiliation(s)
- Brian J C Law
- School of Chemistry & Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK
| | - Matthew R Bennett
- School of Chemistry & Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK
| | - Mark L Thompson
- School of Chemistry & Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK
| | - Colin Levy
- School of Chemistry & Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK
| | - Sarah A Shepherd
- School of Chemistry & Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK
| | - David Leys
- School of Chemistry & Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK
| | - Jason Micklefield
- School of Chemistry & Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK.
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43
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Law BJC, Bennett MR, Thompson ML, Levy C, Shepherd SA, Leys D, Micklefield J. Effects of Active-Site Modification and Quaternary Structure on the Regioselectivity of Catechol-O-Methyltransferase. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201508287] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Brian J. C. Law
- School of Chemistry & Manchester Institute of Biotechnology; University of Manchester; 131 Princess Street Manchester M1 7DN UK
| | - Matthew R. Bennett
- School of Chemistry & Manchester Institute of Biotechnology; University of Manchester; 131 Princess Street Manchester M1 7DN UK
| | - Mark L. Thompson
- School of Chemistry & Manchester Institute of Biotechnology; University of Manchester; 131 Princess Street Manchester M1 7DN UK
| | - Colin Levy
- School of Chemistry & Manchester Institute of Biotechnology; University of Manchester; 131 Princess Street Manchester M1 7DN UK
| | - Sarah A. Shepherd
- School of Chemistry & Manchester Institute of Biotechnology; University of Manchester; 131 Princess Street Manchester M1 7DN UK
| | - David Leys
- School of Chemistry & Manchester Institute of Biotechnology; University of Manchester; 131 Princess Street Manchester M1 7DN UK
| | - Jason Micklefield
- School of Chemistry & Manchester Institute of Biotechnology; University of Manchester; 131 Princess Street Manchester M1 7DN UK
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44
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Busto E, Gerstmann M, Tobola F, Dittmann E, Wiltschi B, Kroutil W. Systems biocatalysis: para-alkenylation of unprotected phenols. Catal Sci Technol 2016. [DOI: 10.1039/c6cy01947a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Commercially available phenol derivatives were transformed with pyruvate to form a new C–C bond leading to the correspondingpara-coumaric acids and only one molecule of water as an innocent side product in buffer.
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Affiliation(s)
- Eduardo Busto
- Department of Chemistry
- NAWI Graz
- BioTechMed Graz
- University of Graz
- 8010 Graz
| | | | - Felix Tobola
- Austrian Centre of Industrial Biotechnology (ACIB)
- 8010 Graz
- Austria
| | - Edmund Dittmann
- Austrian Centre of Industrial Biotechnology (ACIB)
- 8010 Graz
- Austria
| | - Birgit Wiltschi
- Austrian Centre of Industrial Biotechnology (ACIB)
- 8010 Graz
- Austria
| | - Wolfgang Kroutil
- Department of Chemistry
- NAWI Graz
- BioTechMed Graz
- University of Graz
- 8010 Graz
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45
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Ren J, Yao P, Yu S, Dong W, Chen Q, Feng J, Wu Q, Zhu D. An Unprecedented Effective Enzymatic Carboxylation of Phenols. ACS Catal 2015. [DOI: 10.1021/acscatal.5b02529] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jie Ren
- National Engineering Laboratory
for Industrial Enzymes and Tianjin Engineering Research Center for
Biocatalytic Technology Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin 300308, China
| | - Peiyuan Yao
- National Engineering Laboratory
for Industrial Enzymes and Tianjin Engineering Research Center for
Biocatalytic Technology Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin 300308, China
| | - Shanshan Yu
- National Engineering Laboratory
for Industrial Enzymes and Tianjin Engineering Research Center for
Biocatalytic Technology Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin 300308, China
| | - Wenyue Dong
- National Engineering Laboratory
for Industrial Enzymes and Tianjin Engineering Research Center for
Biocatalytic Technology Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin 300308, China
| | - Qijia Chen
- National Engineering Laboratory
for Industrial Enzymes and Tianjin Engineering Research Center for
Biocatalytic Technology Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin 300308, China
| | - Jinhui Feng
- National Engineering Laboratory
for Industrial Enzymes and Tianjin Engineering Research Center for
Biocatalytic Technology Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin 300308, China
| | - Qiaqing Wu
- National Engineering Laboratory
for Industrial Enzymes and Tianjin Engineering Research Center for
Biocatalytic Technology Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin 300308, China
| | - Dunming Zhu
- National Engineering Laboratory
for Industrial Enzymes and Tianjin Engineering Research Center for
Biocatalytic Technology Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 Xi Qi Dao, Tianjin Airport Economic Area, Tianjin 300308, China
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46
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Alissandratos A, Easton CJ. Biocatalysis for the application of CO2 as a chemical feedstock. Beilstein J Org Chem 2015; 11:2370-87. [PMID: 26734087 PMCID: PMC4685893 DOI: 10.3762/bjoc.11.259] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2015] [Accepted: 11/20/2015] [Indexed: 11/23/2022] Open
Abstract
Biocatalysts, capable of efficiently transforming CO2 into other more reduced forms of carbon, offer sustainable alternatives to current oxidative technologies that rely on diminishing natural fossil-fuel deposits. Enzymes that catalyse CO2 fixation steps in carbon assimilation pathways are promising catalysts for the sustainable transformation of this safe and renewable feedstock into central metabolites. These may be further converted into a wide range of fuels and commodity chemicals, through the multitude of known enzymatic reactions. The required reducing equivalents for the net carbon reductions may be drawn from solar energy, electricity or chemical oxidation, and delivered in vitro or through cellular mechanisms, while enzyme catalysis lowers the activation barriers of the CO2 transformations to make them more energy efficient. The development of technologies that treat CO2-transforming enzymes and other cellular components as modules that may be assembled into synthetic reaction circuits will facilitate the use of CO2 as a renewable chemical feedstock, greatly enabling a sustainable carbon bio-economy.
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Affiliation(s)
| | - Christopher J Easton
- Research School of Chemistry, Australian National University, Canberra ACT 2601, Australia
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47
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Sato M, Sakurai N, Suzuki H, Shibata D, Kino K. Enzymatic carboxylation of hydroxystilbenes by the γ-resorcylic acid decarboxylase from Rhizobium radiobacter WU-0108 under reverse reaction conditions. ACTA ACUST UNITED AC 2015. [DOI: 10.1016/j.molcatb.2015.10.006] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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48
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Busto E, Simon RC, Kroutil W. Vinylation of Unprotected Phenols Using a Biocatalytic System. Angew Chem Int Ed Engl 2015; 54:10899-902. [DOI: 10.1002/anie.201505696] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2015] [Indexed: 11/10/2022]
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49
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Busto E, Simon RC, Kroutil W. Vinylation of Unprotected Phenols Using a Biocatalytic System. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201505696] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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50
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Wuensch C, Pavkov-Keller T, Steinkellner G, Gross J, Fuchs M, Hromic A, Lyskowski A, Fauland K, Gruber K, Glueck SM, Faber K. Regioselective Enzymatic β-Carboxylation of para-Hydroxy- styrene Derivatives Catalyzed by Phenolic Acid Decarboxylases. Adv Synth Catal 2015; 357:1909-1918. [PMID: 26190963 PMCID: PMC4498466 DOI: 10.1002/adsc.201401028] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2014] [Revised: 01/07/2015] [Indexed: 11/17/2022]
Abstract
We report on a 'green' method for the utilization of carbon dioxide as C1 unit for the regioselective synthesis of (E)-cinnamic acids via regioselective enzymatic carboxylation of para-hydroxystyrenes. Phenolic acid decarboxylases from bacterial sources catalyzed the β-carboxylation of para-hydroxystyrene derivatives with excellent regio- and (E/Z)-stereoselectivity by exclusively acting at the β-carbon atom of the C=C side chain to furnish the corresponding (E)-cinnamic acid derivatives in up to 40% conversion at the expense of bicarbonate as carbon dioxide source. Studies on the substrate scope of this strategy are presented and a catalytic mechanism is proposed based on molecular modelling studies supported by mutagenesis of amino acid residues in the active site.
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Affiliation(s)
- Christiane Wuensch
- Austrian Centre of Industrial Biotechnology, c/o Department of Chemistry, Organic & Bioorganic Chemistry, Heinrichstrasse 28, University of Graz 8010 Graz, Austria ; Department of Chemistry, Organic & Bioorganic Chemistry, Heinrichstrasse 28, University of Graz 8010 Graz, Austria, ; phone: (+43)-316-380-5332 ; e-mail: or
| | - Tea Pavkov-Keller
- Austrian Centre of Industrial Biotechnology, c/o Department of Chemistry, Organic & Bioorganic Chemistry, Heinrichstrasse 28, University of Graz 8010 Graz, Austria ; Institute of Molecular Biosciences, Humboldtstrasse 50, University of Graz 8010 Graz, Austria
| | - Georg Steinkellner
- Austrian Centre of Industrial Biotechnology, c/o Department of Chemistry, Organic & Bioorganic Chemistry, Heinrichstrasse 28, University of Graz 8010 Graz, Austria ; Institute of Molecular Biosciences, Humboldtstrasse 50, University of Graz 8010 Graz, Austria
| | - Johannes Gross
- Austrian Centre of Industrial Biotechnology, c/o Department of Chemistry, Organic & Bioorganic Chemistry, Heinrichstrasse 28, University of Graz 8010 Graz, Austria ; Department of Chemistry, Organic & Bioorganic Chemistry, Heinrichstrasse 28, University of Graz 8010 Graz, Austria, ; phone: (+43)-316-380-5332 ; e-mail: or
| | - Michael Fuchs
- Department of Chemistry, Organic & Bioorganic Chemistry, Heinrichstrasse 28, University of Graz 8010 Graz, Austria, ; phone: (+43)-316-380-5332 ; e-mail: or
| | - Altijana Hromic
- Austrian Centre of Industrial Biotechnology, c/o Department of Chemistry, Organic & Bioorganic Chemistry, Heinrichstrasse 28, University of Graz 8010 Graz, Austria ; Institute of Molecular Biosciences, Humboldtstrasse 50, University of Graz 8010 Graz, Austria
| | - Andrzej Lyskowski
- Austrian Centre of Industrial Biotechnology, c/o Department of Chemistry, Organic & Bioorganic Chemistry, Heinrichstrasse 28, University of Graz 8010 Graz, Austria ; Institute of Molecular Biosciences, Humboldtstrasse 50, University of Graz 8010 Graz, Austria
| | - Kerstin Fauland
- Austrian Centre of Industrial Biotechnology, c/o Department of Chemistry, Organic & Bioorganic Chemistry, Heinrichstrasse 28, University of Graz 8010 Graz, Austria ; Institute of Molecular Biosciences, Humboldtstrasse 50, University of Graz 8010 Graz, Austria
| | - Karl Gruber
- Institute of Molecular Biosciences, Humboldtstrasse 50, University of Graz 8010 Graz, Austria
| | - Silvia M Glueck
- Austrian Centre of Industrial Biotechnology, c/o Department of Chemistry, Organic & Bioorganic Chemistry, Heinrichstrasse 28, University of Graz 8010 Graz, Austria ; Department of Chemistry, Organic & Bioorganic Chemistry, Heinrichstrasse 28, University of Graz 8010 Graz, Austria, ; phone: (+43)-316-380-5332 ; e-mail: or
| | - Kurt Faber
- Department of Chemistry, Organic & Bioorganic Chemistry, Heinrichstrasse 28, University of Graz 8010 Graz, Austria, ; phone: (+43)-316-380-5332 ; e-mail: or
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