1
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Diemer V, Roy E, Agouridas V, Melnyk O. Protein desulfurization and deselenization. Chem Soc Rev 2024. [PMID: 39010733 DOI: 10.1039/d4cs00135d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/17/2024]
Abstract
Methods enabling the dechalcogenation of thiols or selenols have been investigated and developed for a long time in fields of research as diverse as the study of prebiotic chemistry, the engineering of fuel processing techniques, the study of biomolecule structures and function or the chemical synthesis of biomolecules. The dechalcogenation of thiol or selenol amino acids is nowadays a particularly flourishing area of research for being a pillar of modern chemical protein synthesis, when used in combination with thiol or selenol-based chemoselective peptide ligation chemistries. This review offers a comprehensive and scholarly overview of the field, emphasizing emerging trends and providing a detailed and critical mechanistic discussion of the dechalcogenation methods developed so far. Taking advantage of recently published reports, it also clarifies some unexpected desulfurization reactions that were observed in the past and for which no explanation was provided at the time. Additionally, the review includes a discussion on principal desulfurization methods within the framework of newly introduced green chemistry metrics and toolkits, providing a well-rounded exploration of the subject.
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Affiliation(s)
- Vincent Diemer
- Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 - UMR 9017, Center for Infection and Immunity of Lille, F-59000 Lille, France.
| | - Eliott Roy
- Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 - UMR 9017, Center for Infection and Immunity of Lille, F-59000 Lille, France.
| | - Vangelis Agouridas
- Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 - UMR 9017, Center for Infection and Immunity of Lille, F-59000 Lille, France.
- Centrale Lille, F-59000 Lille, France
| | - Oleg Melnyk
- Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 - UMR 9017, Center for Infection and Immunity of Lille, F-59000 Lille, France.
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2
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Duché G, Sanderson JM. The Chemical Reactivity of Membrane Lipids. Chem Rev 2024; 124:3284-3330. [PMID: 38498932 PMCID: PMC10979411 DOI: 10.1021/acs.chemrev.3c00608] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Revised: 02/27/2024] [Accepted: 02/28/2024] [Indexed: 03/20/2024]
Abstract
It is well-known that aqueous dispersions of phospholipids spontaneously assemble into bilayer structures. These structures have numerous applications across chemistry and materials science and form the fundamental structural unit of the biological membrane. The particular environment of the lipid bilayer, with a water-poor low dielectric core surrounded by a more polar and better hydrated interfacial region, gives the membrane particular biophysical and physicochemical properties and presents a unique environment for chemical reactions to occur. Many different types of molecule spanning a range of sizes, from dissolved gases through small organics to proteins, are able to interact with membranes and promote chemical changes to lipids that subsequently affect the physicochemical properties of the bilayer. This Review describes the chemical reactivity exhibited by lipids in their membrane form, with an emphasis on conditions where the lipids are well hydrated in the form of bilayers. Key topics include the following: lytic reactions of glyceryl esters, including hydrolysis, aminolysis, and transesterification; oxidation reactions of alkenes in unsaturated fatty acids and sterols, including autoxidation and oxidation by singlet oxygen; reactivity of headgroups, particularly with reactive carbonyl species; and E/Z isomerization of alkenes. The consequences of reactivity for biological activity and biophysical properties are also discussed.
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Affiliation(s)
- Genevieve Duché
- Génie
Enzimatique et Cellulaire, Université
Technologique de Compiègne, Compiègne 60200, France
| | - John M Sanderson
- Chemistry
Department, Durham University, Durham DH1 3LE, United Kingdom
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3
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Rosenkranz M, Leßny S, Noecker B, Breakspear S, Dmitrieva E. Formation of free radicals in human hair under strain: Combined electron paramagnetic resonance (EPR) - Strain technique. Talanta 2022; 249:123707. [PMID: 35751920 DOI: 10.1016/j.talanta.2022.123707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Revised: 06/15/2022] [Accepted: 06/16/2022] [Indexed: 11/19/2022]
Abstract
In this work, the formation of free radicals in human hair and the evolution of the radical concentration under strain, using a combined electron paramagnetic resonance (EPR) - strain technique, has been investigated. The radicals formed in the hair as a result of homolytic bond cleavage in cystine residues of polypeptide chains were identified. Stability of the radicals formed in dry hair and in the presence of water were studied. The spin-strain curves for the grey human hair in dry state and in water are presented and compared with conventional hair stress vs. strain curves. The evolution of sulfur radical species has been found to only occur at strains of above ca. 25%, corresponding with the Post-Yield region of the stress vs. strain behaviour for hair; this indicates that the matrix of the hair in this region behaves like a highly crosslinked gel and helps to explain the reversibility in hair mechanical behaviour below the Post-Yield region.
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Affiliation(s)
- Marco Rosenkranz
- Center of Spectroelectrochemistry, Leibniz Institute for Solid State and Materials Research (IFW) Dresden, Helmholtzstr. 20, 01069, Dresden, Germany
| | - Steffen Leßny
- Center of Spectroelectrochemistry, Leibniz Institute for Solid State and Materials Research (IFW) Dresden, Helmholtzstr. 20, 01069, Dresden, Germany
| | - Bernd Noecker
- Kao Germany GmbH, Pfungstädter Str. 98-100, 64297, Darmstadt, Germany
| | - Steven Breakspear
- Kao Germany GmbH, Pfungstädter Str. 98-100, 64297, Darmstadt, Germany.
| | - Evgenia Dmitrieva
- Center of Spectroelectrochemistry, Leibniz Institute for Solid State and Materials Research (IFW) Dresden, Helmholtzstr. 20, 01069, Dresden, Germany.
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4
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Probing the Role of Cysteine Thiyl Radicals in Biology: Eminently Dangerous, Difficult to Scavenge. Antioxidants (Basel) 2022; 11:antiox11050885. [PMID: 35624747 PMCID: PMC9137623 DOI: 10.3390/antiox11050885] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Revised: 04/21/2022] [Accepted: 04/23/2022] [Indexed: 11/17/2022] Open
Abstract
Thiyl radicals are exceptionally interesting reactive sulfur species (RSS), but rather rarely considered in a biological or medical context. We here review the reactivity of protein thiyl radicals in aqueous and lipid phases and provide an overview of their most relevant reaction partners in biological systems. We deduce that polyunsaturated fatty acids (PUFAs) are their preferred reaction substrates in lipid phases, whereas protein side chains arguably prevail in aqueous phases. In both cellular compartments, a single, dominating thiyl radical-specific antioxidant does not seem to exist. This conclusion is rationalized by the high reaction rate constants of thiyl radicals with several highly concentrated substrates in the cell, precluding effective interception by antioxidants, especially in lipid bilayers. The intractable reactivity of thiyl radicals may account for a series of long-standing, but still startling biochemical observations surrounding the amino acid cysteine: (i) its global underrepresentation on protein surfaces, (ii) its selective avoidance in aerobic lipid bilayers, especially the inner mitochondrial membrane, (iii) the inverse correlation between cysteine usage and longevity in animals, (iv) the mitochondrial synthesis and translational incorporation of cysteine persulfide, and potentially (v) the ex post introduction of selenocysteine into the genetic code.
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Oxidation of ethidium-based probes by biological radicals: mechanism, kinetics and implications for the detection of superoxide. Sci Rep 2020; 10:18626. [PMID: 33122809 PMCID: PMC7596101 DOI: 10.1038/s41598-020-75373-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Accepted: 10/13/2020] [Indexed: 12/21/2022] Open
Abstract
Hydroethidine (HE) and hydropropidine (\documentclass[12pt]{minimal}
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\begin{document}$$\hbox {HPr}^{+}$$\end{document}HPr+) are fluorogenic probes used for the detection of the intra- and extracellular superoxide radical anion (\documentclass[12pt]{minimal}
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\begin{document}$$\hbox {O}_{ {2}}^{\bullet -}$$\end{document}O2∙-). In this study, we provide evidence that HE and \documentclass[12pt]{minimal}
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\begin{document}$$\hbox {HPr}^{+}$$\end{document}HPr+ react rapidly with the biologically relevant radicals, including the hydroxyl radical, peroxyl radicals, the trioxidocarbonate radical anion, nitrogen dioxide, and the glutathionyl radical, via one-electron oxidation, forming the corresponding radical cations. At physiological pH, the radical cations of the probes react rapidly with \documentclass[12pt]{minimal}
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\begin{document}$$\hbox {O}_{ {2}}^{\bullet -}$$\end{document}O2∙-, leading to the specific 2-hydroxylated cationic products. We determined the rate constants of the reaction between \documentclass[12pt]{minimal}
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\begin{document}$$\hbox {O}_{ {2}}^{\bullet -}$$\end{document}O2∙- and the radical cations of the probes. We also synthesized N-methylated analogs of \documentclass[12pt]{minimal}
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\begin{document}$$\hbox {HPr}^{+}$$\end{document}HPr+ and HE which were used in mechanistic studies. Methylation of the amine groups was not found to prevent the reaction between the radical cation of the probe and the superoxide, but it significantly increased the lifetime of the radical cation and had a substantial effect on the profiles of the oxidation products by inhibiting the formation of dimeric products. We conclude that the N-methylated analogs of HE and \documentclass[12pt]{minimal}
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\begin{document}$$\hbox {HPr}^{+}$$\end{document}HPr+ may be used as a scaffold for the design of a new generation of probes for intra- and extracellular superoxide.
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Radical rearrangement and transfer reactions in proteins. Essays Biochem 2020; 64:87-96. [PMID: 31922197 DOI: 10.1042/ebc20190046] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2019] [Revised: 12/16/2019] [Accepted: 12/19/2019] [Indexed: 12/29/2022]
Abstract
Radical rearrangement and transfer reactions play an important role in the chemical modifications of proteins in vivo and in vitro. These reactions depend on protein sequence, as well as structure and dynamics. Frequently, these reactions have well-defined precedents in the organic chemistry literature, but their occurrence in proteins provides a stage for a number of novel and, perhaps, unexpected reaction products. This essay will provide an overview over a few representative examples of radical rearrangement and transfer reactions.
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Schöneich C. Thiyl Radical Reactions in the Chemical Degradation of Pharmaceutical Proteins. Molecules 2019; 24:E4357. [PMID: 31795282 PMCID: PMC6930596 DOI: 10.3390/molecules24234357] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2019] [Revised: 11/16/2019] [Accepted: 11/18/2019] [Indexed: 01/01/2023] Open
Abstract
Free radical pathways play a major role in the degradation of protein pharmaceuticals. Inspired by biochemical reactions carried out by thiyl radicals in various enzymatic processes, this review focuses on the role of thiyl radicals in pharmaceutical protein degradation through hydrogen atom transfer, electron transfer, and addition reactions. These processes can lead to the epimerization of amino acids, as well as the formation of various cleavage products and cross-links. Examples are presented for human insulin, human and mouse growth hormone, and monoclonal antibodies.
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Affiliation(s)
- Christian Schöneich
- Department of Pharmaceutical Chemistry, University of Kansas, 2093 Constant Avenue, Lawrence, KS 66047, USA
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8
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Identification of D-Amino Acids in Light Exposed mAb Formulations. Pharm Res 2018; 35:238. [PMID: 30334107 DOI: 10.1007/s11095-018-2520-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2018] [Accepted: 10/05/2018] [Indexed: 12/14/2022]
Abstract
PURPOSE We previously demonstrated that D-amino acids can form as a result of photo-irradiation of a monoclonal antibody (mAb) at both λ = 254 nm and λ > 295 nm (λmax = 305 nm), likely via reversible hydrogen transfer reactions of intermediary thiyl radicals. Here, we investigate the role of various excipients (sucrose, glucose, L-Arg, L-Met and L-Leu) on D-amino acid formation, and specifically the distribution of D-amino acids in mAb monomers and aggregates present after light exposure. METHODS The mAb-containing formulations were photo-irradiated at λ = 254 nm and λmax = 305 nm, followed by fractionation of aggregate and monomer fractions using size exclusion chromatography. These aggregate and monomer fractions were subjected to hydrolysis and subsequent amino acid analysis. RESULTS Both aggregate and monomer fractions collected from all formulations showed the formation of D-Glu and D-Val, whereas the formation of D-Ala was limited to the aggregate fraction collected from an L-Arg-containing formulation. Interestingly, quantitative analysis revealed higher yields of D-amino acids in the L-Arg-containing formulation. CONCLUSIONS Generally, D-amino acids accumulated to similar extents in monomers and aggregates.
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Light-Induced Covalent Buffer Adducts to Histidine in a Model Protein. Pharm Res 2018; 35:67. [DOI: 10.1007/s11095-017-2339-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2017] [Accepted: 12/24/2017] [Indexed: 01/06/2023]
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10
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Tetramer as efficient structural mode for organizing antioxidative carboxylic acids: The case in inhibiting DNA oxidation. Arch Biochem Biophys 2017; 631:1-10. [DOI: 10.1016/j.abb.2017.08.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2017] [Revised: 07/27/2017] [Accepted: 08/03/2017] [Indexed: 01/12/2023]
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11
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Bila WC, Mariano RMDS, Silva VR, Dos Santos MESM, Lamounier JA, Ferriolli E, Galdino AS. Applications of deuterium oxide in human health. ISOTOPES IN ENVIRONMENTAL AND HEALTH STUDIES 2017; 53:327-343. [PMID: 28165769 DOI: 10.1080/10256016.2017.1281806] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2016] [Accepted: 10/12/2016] [Indexed: 06/06/2023]
Abstract
The main aim goal of this review was to gather information about recent publications related to deuterium oxide (D2O), and its use as a scientific tool related to human health. Searches were made in electronic databases Pubmed, Scielo, Lilacs, Medline and Cochrane. Moreover, the following patent databases were consulted: EPO (Espacenet patent search), USPTO (United States Patent and Trademark Office) and Google Patents, which cover researches worldwide related to innovations using D2O.
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Affiliation(s)
- Wendell Costa Bila
- a Graduate Programme in Health Sciences , Federal University of São João Del Rei-West Centre Campus , Divinópolis , Brazil
| | - Reysla Maria da Silveira Mariano
- b Graduate Programme in Biochemistry and Molecular Biology , Federal University of São João del Rei , Divinópolis , Brazil
- c Graduate Program in Biotechnology , Federal University of São João del Rei , Divinópolis , Brazil
| | - Valmin Ramos Silva
- d Faculty of Medicine, School of Sciences of Santa Casa de Misericórdia of Vitória , Nossa Senhora da Glória Children's Hospital , Vitória , Brazil
| | | | - Joel Alves Lamounier
- a Graduate Programme in Health Sciences , Federal University of São João Del Rei-West Centre Campus , Divinópolis , Brazil
| | - Eduardo Ferriolli
- e Ribeirão Preto Medical School , University of São Paulo , Ribeirão Preto , Brazil
| | - Alexsandro Sobreira Galdino
- b Graduate Programme in Biochemistry and Molecular Biology , Federal University of São João del Rei , Divinópolis , Brazil
- c Graduate Program in Biotechnology , Federal University of São João del Rei , Divinópolis , Brazil
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12
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Schöneich C. Sulfur Radical-Induced Redox Modifications in Proteins: Analysis and Mechanistic Aspects. Antioxid Redox Signal 2017; 26:388-405. [PMID: 27288212 DOI: 10.1089/ars.2016.6779] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
SIGNIFICANCE The sulfur-containing amino acids cysteine (Cys) and methionine (Met) are prominent protein targets of redox modification during conditions of oxidative stress. Here, two-electron pathways have received widespread attention, in part due to their role in signaling processes. However, Cys and Met are equally prone to one-electron pathways, generating intermediary radicals and/or radial ions. These radicals/radical ions can generate various reaction products that are not commonly monitored in redox proteomic studies, but they may be relevant for the fate of proteins during oxidative stress. Recent Advances: Time-resolved kinetic studies and product analysis have expanded our mechanistic understanding of radical reaction pathways of sulfur-containing amino acids. These reactions are now studied in some detail for Met and Cys in proteins, and homocysteine (Hcy) chemically linked to proteins, and the role of protein radical reactions in physiological processes is evolving. CRITICAL ISSUES Radical-derived products from Cys, Hcy, and Met can react with additional amino acids in proteins, leading to secondary protein modifications, which are potentially remote from initial points of radical attack. These products may contain intra- and intermolecular cross-links, which may lead to protein aggregation. Protein sequence and conformation will have a significant impact on the formation of such products, and a thorough understanding of reaction mechanisms and specifically how protein structure influences reaction pathways will be critical for identification and characterization of novel reaction products. FUTURE DIRECTIONS Future studies must evaluate the biological significance of novel reaction products that are derived from radical reactions of sulfur-containing amino acids. Antioxid. Redox Signal. 26, 388-405.
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Affiliation(s)
- Christian Schöneich
- Department of Pharmaceutical Chemistry, The University of Kansas , Lawrence, Kansas
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13
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Koppenol WH, Bounds PL. Signaling by sulfur-containing molecules. Quantitative aspects. Arch Biochem Biophys 2017; 617:3-8. [DOI: 10.1016/j.abb.2016.09.012] [Citation(s) in RCA: 49] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2016] [Revised: 09/21/2016] [Accepted: 09/22/2016] [Indexed: 12/16/2022]
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Mozziconacci O, Schöneich C. Chemical degradation of proteins in the solid state with a focus on photochemical reactions. Adv Drug Deliv Rev 2015; 93:2-13. [PMID: 25481682 DOI: 10.1016/j.addr.2014.11.016] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2013] [Revised: 11/12/2014] [Accepted: 11/20/2014] [Indexed: 01/10/2023]
Abstract
Protein pharmaceuticals comprise an increasing fraction of marketed products but the limited solution stability of proteins requires considerable research effort to prepare stable formulations. An alternative is solid formulation, as proteins in the solid state are thermodynamically less susceptible to degradation. Nevertheless, within the time of storage a large panel of kinetically controlled degradation reactions can occur such as, e.g., hydrolysis reactions, the formation of diketopiperazine, condensation and aggregation reactions. These mechanisms of degradation in protein solids are relatively well covered by the literature. Considerably less is known about oxidative and photochemical reactions of solid proteins. This review will provide an overview over photolytic and non-photolytic degradation reactions, and specially emphasize mechanistic details on how solid structure may affect the interaction of protein solids with light.
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Affiliation(s)
- Olivier Mozziconacci
- Department of Pharmaceutical Chemistry, 2095 Constant Avenue, University of Kansas, Lawrence, KS 66047, USA
| | - Christian Schöneich
- Department of Pharmaceutical Chemistry, 2095 Constant Avenue, University of Kansas, Lawrence, KS 66047, USA.
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Abstract
Thiyl radicals are important intermediates in the redox biology and chemistry of thiols. These radicals can react via hydrogen transfer with various C-H bonds in peptides and proteins, leading to the generation of carbon-centered radicals, and, potentially, to irreversible protein damage. This review summarizes quantitative information on reaction kinetics and product formation, and discusses the significance of these reactions for protein degradation induced by thiyl radical formation.
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Affiliation(s)
- Christian Schöneich
- a Department of Pharmaceutical Chemistry , The University of Kansas , Lawrence , KS 66047 , USA
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Nauser T, Koppenol WH, Schöneich C. Protein thiyl radical reactions and product formation: a kinetic simulation. Free Radic Biol Med 2015; 80:158-63. [PMID: 25499854 PMCID: PMC5118936 DOI: 10.1016/j.freeradbiomed.2014.12.006] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/22/2014] [Revised: 11/26/2014] [Accepted: 12/01/2014] [Indexed: 11/30/2022]
Abstract
Protein thiyl radicals are important intermediates generated in redox processes of thiols and disulfides. Thiyl radicals efficiently react with glutathione and ascorbate, and the common notion is that these reactions serve to eliminate thiyl radicals before they can enter potentially hazardous processes. However, over the past years increasing evidence has been provided for rather efficient intramolecular hydrogen transfer processes of thiyl radicals in proteins and peptides. Based on rate constants published for these processes, we have performed kinetic simulations of protein thiyl radical reactivity. Our simulations suggest that protein thiyl radicals enter intramolecular hydrogen transfer reactions to a significant extent even under physiologic conditions, i.e., in the presence of 30 µM oxygen, 1 mM ascorbate, and 10 mM glutathione. At lower concentrations of ascorbate and glutathione, frequently observed when tissue is exposed to oxidative stress, the extent of irreversible protein thiyl radical-dependent protein modification increases.
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Affiliation(s)
- Thomas Nauser
- Institute of Inorganic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zürich, 8093 Zürich, Switzerland.
| | - Willem H Koppenol
- Institute of Inorganic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zürich, 8093 Zürich, Switzerland
| | - Christian Schöneich
- Department of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS 66047, USA.
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Yang TY, Xu ZF, Liu W, Xu B, Deng Y, Li YH, Feng S. Alpha-lipoic acid protects against methylmercury-induced neurotoxic effects via inhibition of oxidative stress in rat cerebral cortex. ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY 2015; 39:157-166. [PMID: 25522843 DOI: 10.1016/j.etap.2014.11.020] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2014] [Revised: 11/24/2014] [Accepted: 11/26/2014] [Indexed: 06/04/2023]
Abstract
MeHg is one of the environmental pollutants that lead to oxidative stress and an indirect excitotoxicity caused by altered glutamate (Glu) concentration. However, little was known of the interaction. Therefore, we developed a rat model of MeHg poisoning to explore its neurotoxic effects, and whether LA could attenuate MeHg-induced neurotoxicity. Seventy-two rats were randomly divided into four groups: control group, MeHg-treated groups (4 and 12μmol/kg), and LA pre-treatment group. Administration of the 12μmol/kg MeHg for 4 weeks significantly increased ROS formation that might be critical to aggravate oxidative damages in cerebral cortex. Meanwhile, Glu metabolism as well as GLAST and GLT-1 appeared to be disrupted by MeHg exposure. Pre-treatment of the 35μmol/kg LA significantly prevented MeHg-induced oxidative stress and Glu dyshomoestasis. In conclusion, findings indicated that MeHg could induce oxidative stress and Glu uptake/metabolism disorders in cerebral cortex, LA might antagonize these neurotoxic effects induced by MeHg.
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Affiliation(s)
- Tian-Yao Yang
- Department of Environmental Health, School of Public Health, China Medical University, Shenyang 110001, Liaoning Province, People's Republic of China
| | - Zhao-Fa Xu
- Department of Environmental Health, School of Public Health, China Medical University, Shenyang 110001, Liaoning Province, People's Republic of China.
| | - Wei Liu
- Department of Environmental Health, School of Public Health, China Medical University, Shenyang 110001, Liaoning Province, People's Republic of China
| | - Bin Xu
- Department of Environmental Health, School of Public Health, China Medical University, Shenyang 110001, Liaoning Province, People's Republic of China
| | - Yu Deng
- Department of Environmental Health, School of Public Health, China Medical University, Shenyang 110001, Liaoning Province, People's Republic of China
| | - Yue-Hui Li
- Department of Environmental Health, School of Public Health, China Medical University, Shenyang 110001, Liaoning Province, People's Republic of China
| | - Shu Feng
- Department of Environmental Health, School of Public Health, China Medical University, Shenyang 110001, Liaoning Province, People's Republic of China
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Nechab M, Mondal S, Bertrand MP. 1,n-Hydrogen-Atom Transfer (HAT) Reactions in Whichn≠5: An Updated Inventory. Chemistry 2014; 20:16034-59. [DOI: 10.1002/chem.201403951] [Citation(s) in RCA: 167] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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19
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Mozziconacci O, Schöneich C. Sequence-specific formation of d-amino acids in a monoclonal antibody during light exposure. Mol Pharm 2014; 11:4291-7. [PMID: 25283332 DOI: 10.1021/mp500508w] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
The photoirradiation of a monoclonal antibody 1 (mAb1) at λ = 254 nm and λmax = 305 nm resulted in the sequence-specific generation of d-Val, d-Tyr, and potentially d-Ala and d-Arg, in the heavy chain sequence [95-101] YCARVVY. d-Amino acid formation is most likely the product of reversible intermediary carbon-centered radical formation at the (α)C-positions of the respective amino acids ((α)C(•) radicals) through the action of Cys thiyl radicals (CysS(•)). The latter can be generated photochemically either through direct homolysis of cystine or through photoinduced electron transfer from Trp and/or Tyr residues. The potential of mAb1 sequences to undergo epimerization was first evaluated through covalent H/D exchange during photoirradiation in D2O, and proteolytic peptides exhibiting deuterium incorporation were monitored by HPLC-MS/MS analysis. Subsequently, mAb1 was photoirradiated in H2O, and peptides, for which deuterium incorporation in D2O had been documented, were purified by HPLC and subjected to hydrolysis and amino acid analysis. Importantly, not all peptide sequences which incorporated deuterium during photoirradiation in D2O also exhibited photoinduced d-amino acid formation. For example, the heavy chain sequence [12-18] VQPGGSL showed significant deuterium incorporation during photoirradiation in D2O, but no photoinduced formation of d-amino acids was detected. Instead this sequence contained ca. 22% d-Val in both a photoirradiated and a control sample. This observation could indicate that d-Val may have been generated either during production and/or storage or during sample preparation. While sample preparation did not lead to the formation of d-Val or other d-amino acids in the control sample for the heavy chain sequence [95-101] YCARVVY, we may have to consider that during hydrolysis N-terminal residues (such as in VQPGGSL) may be more prone to epimerization. We conclude that the photoinduced, radical-dependent formation of d-amino acids requires not only the intermediary formation of a (α)C(•) radical but also sufficient flexibility of the protein domain to allow both pro-chiral faces of the (α)C(•) radical to accept a hydrogen atom.
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Affiliation(s)
- Olivier Mozziconacci
- Department of Pharmaceutical Chemistry, University of Kansas , 2095 Constant Avenue, Lawrence, Kansas 66047, United States
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Nauser T, Steinmann D, Grassi G, Koppenol WH. Why Selenocysteine Replaces Cysteine in Thioredoxin Reductase: A Radical Hypothesis. Biochemistry 2014; 53:5017-22. [DOI: 10.1021/bi5003376] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Thomas Nauser
- Institute of Inorganic Chemistry and ‡Institute of Physical Chemistry,
Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg
2, CH-8093 Zürich, Switzerland
| | - Daniel Steinmann
- Institute of Inorganic Chemistry and ‡Institute of Physical Chemistry,
Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg
2, CH-8093 Zürich, Switzerland
| | - Guido Grassi
- Institute of Inorganic Chemistry and ‡Institute of Physical Chemistry,
Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg
2, CH-8093 Zürich, Switzerland
| | - Willem H. Koppenol
- Institute of Inorganic Chemistry and ‡Institute of Physical Chemistry,
Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg
2, CH-8093 Zürich, Switzerland
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Wei Y, Mathies G, Yokoyama K, Chen J, Griffin R, Stubbe J. A chemically competent thiosulfuranyl radical on the Escherichia coli class III ribonucleotide reductase. J Am Chem Soc 2014; 136:9001-13. [PMID: 24827372 PMCID: PMC4073831 DOI: 10.1021/ja5030194] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2014] [Indexed: 11/28/2022]
Abstract
The class III ribonucleotide reductases (RNRs) are glycyl radical (G•) enzymes that provide the balanced pool of deoxynucleotides required for DNA synthesis and repair in many facultative and obligate anaerobic bacteria and archaea. Unlike the class I and II RNRs, where reducing equivalents for the reaction are delivered by a redoxin (thioredoxin, glutaredoxin, or NrdH) via a pair of conserved active site cysteines, the class III RNRs examined to date use formate as the reductant. Here, we report that reaction of the Escherichia coli class III RNR with CTP (substrate) and ATP (allosteric effector) in the absence of formate leads to loss of the G• concomitant with stoichiometric formation of a new radical species and a "trapped" cytidine derivative that can break down to cytosine. Addition of formate to the new species results in recovery of 80% of the G• and reduction of the cytidine derivative, proposed to be 3'-keto-deoxycytidine, to dCTP and a small amount of cytosine. The structure of the new radical has been identified by 9.5 and 140 GHz EPR spectroscopy on isotopically labeled varieties of the protein to be a thiosulfuranyl radical [RSSR2]•, composed of a cysteine thiyl radical stabilized by an interaction with a methionine residue. The presence of a stable radical species on the reaction pathway rationalizes the previously reported [(3)H]-(k(cat)/K(M)) isotope effect of 2.3 with [(3)H]-formate, requiring formate to exchange between the active site and solution during nucleotide reduction. Analogies with the disulfide anion radical proposed to provide the reducing equivalent to the 3'-keto-deoxycytidine intermediate by the class I and II RNRs provide further evidence for the involvement of thiyl radicals in the reductive half-reaction catalyzed by all RNRs.
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Affiliation(s)
- Yifeng Wei
- Departments of Chemistry and Biology and Francis Bitter National Magnet Laboratory, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139-4307, United States
| | - Guinevere Mathies
- Departments of Chemistry and Biology and Francis Bitter National Magnet Laboratory, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139-4307, United States
| | - Kenichi Yokoyama
- Departments of Chemistry and Biology and Francis Bitter National Magnet Laboratory, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139-4307, United States
| | - Jiahao Chen
- Departments of Chemistry and Biology and Francis Bitter National Magnet Laboratory, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139-4307, United States
| | - Robert
G. Griffin
- Departments of Chemistry and Biology and Francis Bitter National Magnet Laboratory, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139-4307, United States
| | - JoAnne Stubbe
- Departments of Chemistry and Biology and Francis Bitter National Magnet Laboratory, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139-4307, United States
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Schöneich C, Mozziconacci O, Koppenol WH, Nauser T. Intramolecular 1,2- and 1,3-Hydrogen Transfer Reactions of Thiyl Radicals. Isr J Chem 2014. [DOI: 10.1002/ijch.201300107] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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Chatgilialoglu C, Ferreri C, Melchiorre M, Sansone A, Torreggiani A. Lipid geometrical isomerism: from chemistry to biology and diagnostics. Chem Rev 2013; 114:255-84. [PMID: 24050531 DOI: 10.1021/cr4002287] [Citation(s) in RCA: 121] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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Osburn S, Berden G, Oomens J, Gulyuz K, Polfer NC, O'Hair RAJ, Ryzhov V. Structure and Reactivity of the Glutathione Radical Cation: Radical Rearrangement from the Cysteine Sulfur to the Glutamic Acid α-Carbon Atom. Chempluschem 2013; 78:970-978. [DOI: 10.1002/cplu.201300057] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2013] [Indexed: 12/19/2022]
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