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Paul E, Chakraborty B, Sikorskii A, Ghosh S. A framework for testing non-inferiority in a three-arm, sequential, multiple assignment randomized trial. Stat Methods Med Res 2024; 33:611-633. [PMID: 38400576 DOI: 10.1177/09622802241232124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2024]
Abstract
Sequential multiple assignment randomized trial design is becoming increasingly used in the field of precision medicine. This design allows comparisons of sequences of adaptive interventions tailored to the individual patient. Superiority testing is usually the initial goal in order to determine which embedded adaptive intervention yields the best primary outcome on average. When direct superiority is not evident, yet an adaptive intervention poses other benefits, then non-inferiority testing is warranted. Non-inferiority testing in the sequential multiple assignment randomized trial setup is rather new and involves the specification of non-inferiority margin and other important assumptions that are often unverifiable internally. These challenges are not specific to sequential multiple assignment randomized trial and apply to two-arm non-inferiority trials that do not include a standard-of-care (or placebo) arm. To address some of these challenges, three-arm non-inferiority trials that include the standard-of-care arm are proposed. However, methods developed so far for three-arm non-inferiority trials are not sequential multiple assignment randomized trial-specific. This is because apart from embedded adaptive interventions, sequential multiple assignment randomized trial typically does not include a third standard-of-care arm. In this article, we consider a three-arm sequential multiple assignment randomized trial from an National Institutes of Health-funded study of symptom management strategies among people undergoing cancer treatment. Motivated by that example, we propose a novel data analytic method for non-inferiority testing in the framework of three-arm sequential multiple assignment randomized trial for the first time. Sample size and power considerations are discussed through extensive simulation studies to elucidate our method.
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Affiliation(s)
- Erina Paul
- Biostatistics and Research Decision Sciences, Merck & Co., Inc., Kenilworth, NJ, USA
| | - Bibhas Chakraborty
- Centre for Quantitative Medicine, Duke-NUS Medical School, Singapore
- Department of Statistics and Data Science, National University of Singapore, Singapore
- Department of Biostatistics and Bioinformatics, Duke University, Durham, NC, USA
| | - Alla Sikorskii
- Department of Psychiatry, Michigan State University, East Lansing, MI, USA
| | - Samiran Ghosh
- Department of Biostatistics & Data Science and Institute for Implementation Science, School of Public Health, University of Texas, Houston, TX, USA
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Diao Z, Molludi J, Latef Fateh H, Moradi S. Comparison of the low-calorie DASH diet and a low-calorie diet on serum TMAO concentrations and gut microbiota composition of adults with overweight/obesity: a randomized control trial. Int J Food Sci Nutr 2024; 75:207-220. [PMID: 38149315 DOI: 10.1080/09637486.2023.2294685] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Accepted: 12/09/2023] [Indexed: 12/28/2023]
Abstract
This study compares two diets, Dietary Approaches to Stop Hypertension (DASH) and a Low-Calorie Diet on Trimethylamine N-oxide (TMAO) levels and gut microbiota. 120 obese adults were randomly allocated to these three groups: a low-calorie DASH diet, a Low-Calorie diet, or a control group for 12 weeks. Outcomes included plasma TMAO, lipopolysaccharides (LPS), and gut microbiota profiles. After the intervention, the low-calorie DASH diet group demonstrated a greater decrease in TMAO levels (-20 ± 8.1 vs. -10.63 ± 4.6 μM) and a significant decrease in LPS concentration (-19.76 ± 4.2 vs. -5.68 ± 2.3) compared to the low-calorie diet group. Furthermore, the low-calorie DASH diet showed a higher decrease in the Firmicutes and Bactericides (F/B) ratio, which influenced TMAO levels, compared to the Low-Calorie diet (p = 0.028). The current study found the low-calorie DASH diet improves TMAO and LPS in comparison to a Low-Calorie diet.
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Affiliation(s)
- Zhipeng Diao
- Tianjin Yite Life Science R&D Co. LTD, Tianjin, China
| | - Jalall Molludi
- Research Center for Environmental Determinants of Health (RCEDH), Kermanshah University of Medical Sciences, Kermanshah, Iran
| | - Hawal Latef Fateh
- Nursing Department, Kalar Technical College, Sulaimani Polytechnic University, Sulaymaniyah, Iraq
- Nursing Department, Kalar Technical College, Garmian Polytechnic University, Kalar, Iraq
| | - Sara Moradi
- Research Center for Environmental Determinants of Health (RCEDH), Kermanshah University of Medical Sciences, Kermanshah, Iran
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Nahum-Shani I, Dziak JJ, Venera H, Pfammatter AF, Spring B, Dempsey W. Design of experiments with sequential randomizations on multiple timescales: the hybrid experimental design. Behav Res Methods 2024; 56:1770-1792. [PMID: 37156958 PMCID: PMC10961682 DOI: 10.3758/s13428-023-02119-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/28/2023] [Indexed: 05/10/2023]
Abstract
Psychological interventions, especially those leveraging mobile and wireless technologies, often include multiple components that are delivered and adapted on multiple timescales (e.g., coaching sessions adapted monthly based on clinical progress, combined with motivational messages from a mobile device adapted daily based on the person's daily emotional state). The hybrid experimental design (HED) is a new experimental approach that enables researchers to answer scientific questions about the construction of psychological interventions in which components are delivered and adapted on different timescales. These designs involve sequential randomizations of study participants to intervention components, each at an appropriate timescale (e.g., monthly randomization to different intensities of coaching sessions and daily randomization to different forms of motivational messages). The goal of the current manuscript is twofold. The first is to highlight the flexibility of the HED by conceptualizing this experimental approach as a special form of a factorial design in which different factors are introduced at multiple timescales. We also discuss how the structure of the HED can vary depending on the scientific question(s) motivating the study. The second goal is to explain how data from various types of HEDs can be analyzed to answer a variety of scientific questions about the development of multicomponent psychological interventions. For illustration, we use a completed HED to inform the development of a technology-based weight loss intervention that integrates components that are delivered and adapted on multiple timescales.
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Affiliation(s)
- Inbal Nahum-Shani
- Institute for Social Research, University of Michigan, Ann Arbor, MI, USA.
| | - John J Dziak
- Institute for Health Research and Policy, University of Illinois Chicago, Chicago, IL, USA
| | - Hanna Venera
- School of Public Health and Institute for Social Research, University of Michigan, Ann Arbor, MI, USA
| | - Angela F Pfammatter
- College of Education, Health, and Human Sciences, The University of Tennessee Knoxville, Knoxville, TN, USA
- Feinberg School of Medicine, Northwestern University, Evanston, IL, USA
| | - Bonnie Spring
- Feinberg School of Medicine, Northwestern University, Evanston, IL, USA
| | - Walter Dempsey
- School of Public Health and Institute for Social Research, University of Michigan, Ann Arbor, MI, USA
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Dziak JJ, Almirall D, Dempsey W, Stanger C, Nahum-Shani I. SMART Binary: New Sample Size Planning Resources for SMART Studies with Binary Outcome Measurements. MULTIVARIATE BEHAVIORAL RESEARCH 2024; 59:1-16. [PMID: 37459401 PMCID: PMC10792389 DOI: 10.1080/00273171.2023.2229079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/23/2023]
Abstract
Sequential Multiple-Assignment Randomized Trials (SMARTs) play an increasingly important role in psychological and behavioral health research. This experimental approach enables researchers to answer scientific questions about how to sequence and match interventions to the unique, changing needs of individuals. A variety of sample size planning resources for SMART studies have been developed, enabling researchers to plan SMARTs for addressing different types of scientific questions. However, relatively limited attention has been given to planning SMARTs with binary (dichotomous) outcomes, which often require higher sample sizes relative to continuous outcomes. Existing resources for estimating sample size requirements for SMARTs with binary outcomes do not consider the potential to improve power by including a baseline measurement and/or multiple repeated outcome measurements. The current paper addresses this issue by providing sample size planning simulation procedures and approximate formulas for two-wave repeated measures binary outcomes (i.e., two measurement times for the outcome variable, before and after intervention delivery). The simulation results agree well with the formulas. We also discuss how to use simulations to calculate power for studies with more than two outcome measurement occasions. Results show that having at least one repeated measurement of the outcome can substantially improve power under certain conditions.
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Affiliation(s)
- John J. Dziak
- Institute for Health Research and Policy, University of Illinois at Chicago
| | | | | | - Catherine Stanger
- Center for Technology and Behavioral Health, Geisel School of Medicine, Dartmouth College
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Ghosh P, Yan X, Chakraborty B. A novel approach to assess dynamic treatment regimes embedded in a SMART with an ordinal outcome. Stat Med 2023; 42:1096-1111. [PMID: 36726310 DOI: 10.1002/sim.9659] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 10/21/2022] [Accepted: 01/04/2023] [Indexed: 02/03/2023]
Abstract
Sequential multiple assignment randomized trials (SMARTs) are used to construct data-driven optimal intervention strategies for subjects based on their intervention and covariate histories in different branches of health and behavioral sciences where a sequence of interventions is given to a participant. Sequential intervention strategies are often called dynamic treatment regimes (DTR). In the existing literature, the majority of the analysis methodologies for SMART data assume a continuous primary outcome. However, ordinal outcomes are also quite common in clinical practice. In this work, first, we introduce the notion of generalized odds ratio ( G O R $$ GOR $$ ) to compare two DTRs embedded in a SMART with an ordinal outcome and discuss some combinatorial properties of this measure. Next, we propose a likelihood-based approach to estimate G O R $$ GOR $$ from SMART data, and derive the asymptotic properties of its estimate. We discuss alternative ways to estimate G O R $$ GOR $$ using concordant-discordant pairs and two-sample U $$ U $$ -statistic. We derive the required sample size formula for designing SMARTs with ordinal outcomes based on G O R $$ GOR $$ . A simulation study shows the performance of the estimated G O R $$ GOR $$ in terms of the estimated power corresponding to the derived sample size. The methodology is applied to analyze data from the SMART+ study, conducted in the UK, to improve carbohydrate periodization behavior in athletes using a menu planner mobile application, Hexis Performance. A freely available Shiny web app using R is provided to make the proposed methodology accessible to other researchers and practitioners.
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Affiliation(s)
- Palash Ghosh
- Department of Mathematics, Indian Institute of Technology Guwahati, Assam, India.,Jyoti and Bhupat Mehta School of Health Sciences and Technology, Indian Institute of Technology Guwahati, Assam, India.,Centre for Quantitative Medicine, Duke-NUS Medical School, Singapore, Singapore
| | - Xiaoxi Yan
- Centre for Quantitative Medicine, Duke-NUS Medical School, Singapore, Singapore
| | - Bibhas Chakraborty
- Centre for Quantitative Medicine, Duke-NUS Medical School, Singapore, Singapore.,Department of Statistics and Data Science, National University of Singapore, Singapore, Singapore.,Department of Biostatistics and Bioinformatics, Duke University, Durham, North Carolina
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Abstract
Cognitive-behavioral therapy for insomnia (CBT-I) is the main recommended treatment for patients presenting with insomnia; however, the treatment is not equally effective for all, and several factors can contribute to a diminished treatment response. The rationale for combining CBT-I treatment with acupuncture is explored, and evidence supporting its use in treating insomnia and related comorbidities is discussed. Practical, regulatory, and logistical issues with implementing a combined treatment are examined, and future directions for research are made. Growing evidence supports the effectiveness of acupuncture in treating insomnia and comorbid conditions, and warrants further investigation of acupuncture as an adjunct to CBT-I.
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Wang X, Chakraborty B. The Sequential Multiple Assignment Randomized Trial for Controlling Infectious Diseases: A Review of Recent Developments. Am J Public Health 2023; 113:49-59. [PMID: 36516390 PMCID: PMC9755933 DOI: 10.2105/ajph.2022.307135] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Infectious diseases have posed severe threats to public health across the world. Effective prevention and control of infectious diseases in the long term requires adapting interventions based on epidemiological evidence. The sequential multiple assignment randomized trial (SMART) is a multistage randomized trial that can provide valid evidence of when and how to adapt interventions for controlling infectious diseases based on evolving epidemiological evidence. We review recent developments in SMARTs to bring wider attention to the potential benefits of employing SMARTs in constructing effective adaptive interventions for controlling infectious diseases and other threats to public health. We discuss 2 example SMARTs for infectious diseases and summarize recent developments in SMARTs from the varied aspects of design, analysis, cost, and ethics. Public health investigators are encouraged to familiarize themselves with the related materials we discuss and collaborate with experts in SMARTs to translate the methodological developments into preeminent public health research. (Am J Public Health. 2023;113(1):49-59. https://doi.org/10.2105/AJPH.2022.307135).
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Affiliation(s)
- Xinru Wang
- Xinru Wang and Bibhas Chakraborty are with the Centre for Quantitative Medicine, Duke-NUS Medical School, Singapore. Bibhas Chakraborty is also with the Department of Statistics and Data Science, National University of Singapore, Singapore
| | - Bibhas Chakraborty
- Xinru Wang and Bibhas Chakraborty are with the Centre for Quantitative Medicine, Duke-NUS Medical School, Singapore. Bibhas Chakraborty is also with the Department of Statistics and Data Science, National University of Singapore, Singapore
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Nahum-Shani I, Dziak JJ, Walton MA, Dempsey W. Hybrid Experimental Designs for Intervention Development: What, Why, and How. ADVANCES IN METHODS AND PRACTICES IN PSYCHOLOGICAL SCIENCE 2022; 5:10.1177/25152459221114279. [PMID: 36935844 PMCID: PMC10024531 DOI: 10.1177/25152459221114279] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Advances in mobile and wireless technologies offer tremendous opportunities for extending the reach and impact of psychological interventions and for adapting interventions to the unique and changing needs of individuals. However, insufficient engagement remains a critical barrier to the effectiveness of digital interventions. Human delivery of interventions (e.g., by clinical staff) can be more engaging but potentially more expensive and burdensome. Hence, the integration of digital and human-delivered components is critical to building effective and scalable psychological interventions. Existing experimental designs can be used to answer questions either about human-delivered components that are typically sequenced and adapted at relatively slow timescales (e.g., monthly) or about digital components that are typically sequenced and adapted at much faster timescales (e.g., daily). However, these methodologies do not accommodate sequencing and adaptation of components at multiple timescales and hence cannot be used to empirically inform the joint sequencing and adaptation of human-delivered and digital components. Here, we introduce the hybrid experimental design (HED)-a new experimental approach that can be used to answer scientific questions about building psychological interventions in which human-delivered and digital components are integrated and adapted at multiple timescales. We describe the key characteristics of HEDs (i.e., what they are), explain their scientific rationale (i.e., why they are needed), and provide guidelines for their design and corresponding data analysis (i.e., how can data arising from HEDs be used to inform effective and scalable psychological interventions).
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Affiliation(s)
- Inbal Nahum-Shani
- Institute for Social Research, University of Michigan, Ann Arbor, Michigan
| | - John J. Dziak
- Prevention Research Center, The Pennsylvania State University, State College, Pennsylvania
| | - Maureen A. Walton
- Department of Psychiatry and Addiction Center, Injury Prevention Center, University of Michigan, Ann Arbor, Michigan
| | - Walter Dempsey
- School of Public Health and Institute for Social Research, University of Michigan, Ann Arbor, Michigan
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Ficek J, Chen H, Lu Y, Huang Y, Mayer JM. Assessing the impacts of cluster effects and covariate imbalance in cluster randomized equivalence trials. Stat Biopharm Res 2022. [DOI: 10.1080/19466315.2022.2071981] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Joseph Ficek
- College of Public Health, University of South Florida (USF), Tampa, FL 33612, USA
| | - Henian Chen
- College of Public Health, University of South Florida (USF), Tampa, FL 33612, USA
| | - Yuanyuan Lu
- College of Public Health, University of South Florida (USF), Tampa, FL 33612, USA
| | - Yangxin Huang
- College of Public Health, University of South Florida (USF), Tampa, FL 33612, USA
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Yan X, Matchar DB, Sivapragasam N, Ansah JP, Goel A, Chakraborty B. Sequential Multiple Assignment Randomized Trial (SMART) to identify optimal sequences of telemedicine interventions for improving initiation of insulin therapy: A simulation study. BMC Med Res Methodol 2021; 21:200. [PMID: 34592951 PMCID: PMC8481760 DOI: 10.1186/s12874-021-01395-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Accepted: 09/08/2021] [Indexed: 01/06/2023] Open
Abstract
BACKGROUND To examine the value of a Sequential Multiple Assignment Randomized Trial (SMART) design compared to a conventional randomized control trial (RCT) for telemedicine strategies to support titration of insulin therapy for Type 2 Diabetes Mellitus (T2DM) patients new to insulin. METHODS Microsimulation models were created in R using a synthetic sample based on primary data from 63 subjects enrolled in a pilot study of a smartphone application (App), Diabetes Pal compared to a nurse-based telemedicine strategy (Nurse). For comparability, the SMART and an RCT design were constructed to allow comparison of four (embedded) adaptive interventions (AIs). RESULTS In the base case scenario, the SMART has similar overall mean expected HbA1c and cost per subject compared with RCT, for sample size of n = 100 over 10,000 simulations. SMART has lower (better) standard deviations of the mean expected HbA1c per AI, and higher efficiency of choosing the correct AI across various sample sizes. The differences between SMART and RCT become apparent as sample size decreases. For both trial designs, the threshold value at which a subject was deemed to have been responsive at an intermediate point in the trial had an optimal choice (i.e., the sensitivity curve had a U-shape). SMART design dominates the RCT, in the overall mean HbA1c (lower value) when the threshold value is close to optimal. CONCLUSIONS SMART is suited to evaluating the efficacy of different sequences of treatment options, in addition to the advantage of providing information on optimal treatment sequences.
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Affiliation(s)
- Xiaoxi Yan
- Centre for Quantitative Medicine. Duke-NUS Medical School, 8 College Road, Singapore, 169857 Singapore
| | - David B. Matchar
- Health Services and Systems Research Department, Duke-NUS Medical School, 8 College Road, Singapore, 169857 Singapore
- Department of Medicine, Duke University Medical Center, Durham, North Carolina USA
| | - Nirmali Sivapragasam
- Health Services and Systems Research Department, Duke-NUS Medical School, 8 College Road, Singapore, 169857 Singapore
| | - John P. Ansah
- Health Services and Systems Research Department, Duke-NUS Medical School, 8 College Road, Singapore, 169857 Singapore
| | - Aastha Goel
- Health Services and Systems Research Department, Duke-NUS Medical School, 8 College Road, Singapore, 169857 Singapore
| | - Bibhas Chakraborty
- Centre for Quantitative Medicine. Duke-NUS Medical School, 8 College Road, Singapore, 169857 Singapore
- Department of Statistics and Applied Probability, Faculty of Science, National University of Singapore, Singapore, 117546 Singapore
- Department of Biostatistics and Bioinformatics, Duke University, Durham, North Carolina USA
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Chakraborty B. Statistical Remedies for Medical Researchers
Peter F. Thall Springer, 2020, xi + 291 pages, £ 79.99/$109.99, hardcover ISBN: 978‐3‐030‐43713‐8. Int Stat Rev 2020. [DOI: 10.1111/insr.12419] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Bibhas Chakraborty
- Center for Quantitative Medicine, Duke‐NUS Medical School 8 College Road 169857 Singapore
- Department of Statistics and Applied Probability National University of Singapore Singapore
- Department of Biostatistics and Bioinformatics Duke University Durham North Carolina USA
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Yan X, Ghosh P, Chakraborty B. Sample size calculation based on precision for pilot sequential multiple assignment randomized trial (SMART). Biom J 2020; 63:247-271. [DOI: 10.1002/bimj.201900364] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2019] [Revised: 05/09/2020] [Accepted: 05/14/2020] [Indexed: 11/11/2022]
Affiliation(s)
- Xiaoxi Yan
- Centre for Quantitative Medicine Duke‐NUS Medical School Singapore
| | - Palash Ghosh
- Centre for Quantitative Medicine Duke‐NUS Medical School Singapore
- Department of Mathematics Indian Institute of Technology Guwahati Guwahati Assam India
| | - Bibhas Chakraborty
- Centre for Quantitative Medicine Duke‐NUS Medical School Singapore
- Department of Statistics and Applied Probability National University of Singapore Singapore
- Department of Biostatistics and Bioinformatics Duke University Durham NC USA
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