Hydrocarbon Constituents of the Wax Coatings of Plant Leaves: A Taxonomic Survey

Hydrocarbon Desaturation in Cyanobacterial Thylakoid Membranes Is Linked With Acclimation to Suboptimal Growth Temperatures

The ability to produce medium chain length aliphatic hydrocarbons is strictly conserved in all photosynthetic cyanobacteria, but the molecular function and biological significance of these compounds still remain poorly understood. This study gives a detailed view to the changes in intracellular hydrocarbon chain saturation in response to different growth temperatures and osmotic stress, and the associated physiological effects in the model cyanobacterium Synechocystis sp. PCC 6803. We show that the ratio between the representative hydrocarbons, saturated heptadecane and desaturated heptadecene, is reduced upon transition from 38°C toward 15°C, while the total content is not much altered. In parallel, it appears that in the hydrocarbon-deficient ∆ado (aldehyde deformylating oxygenase) mutant, phenotypic and metabolic changes become more evident under suboptimal temperatures. These include hindered growth, accumulation of polyhydroxybutyrate, altered pigment profile, restricted phycobilisome movement, and ultimately reduced CO2 uptake and oxygen evolution in the ∆ado strain as compared to Synechocystis wild type. The hydrocarbons are present in relatively low amounts and expected to interact with other nonpolar cellular components, including the hydrophobic part of the membrane lipids. We hypothesize that the function of the aliphatic chains is specifically associated with local fluidity effects of the thylakoid membrane, which may be required for the optimal movement of the integral components of the photosynthetic machinery. The findings support earlier studies and expand our understanding of the biological role of aliphatic hydrocarbons in acclimation to low temperature in cyanobacteria and link the proposed role in the thylakoid membrane to changes in photosynthetic performance, central carbon metabolism, and cell growth, which need to be effectively fine-tuned under alternating conditions in nature.

Environmental implications and evidence of natural products from dental calculi of a Neolithic-Chalcolithic community (central Italy)

In this contribution, we investigated the role of plants in the prehistoric community of Casale del Dolce (Anagni, FR, central Italy), through microparticles recovered from dental calculus. The finding of a great amount of pollen types, even in form of compact lumps, could indicate use of natural substances, such as honeybee products and/or conifer resins. This plant-microremain record also suggested environmental implications relative to the Neolithic and Chalcolithic period. Additionally, the stability of the tartar microenvironment had preserved starches and other microparticles, such as one epidermal trichome, a sporangium, and fragments of plant tissue, rarely detected in ancient dental calculus. The detection of secondary metabolites in the ancient matrix confirmed the familiarity of this community with plant resources. All these data supply various interesting food for thought and expand the knowledge about the potential of dental calculus in archaeological and archaeobotanical fields with a special focus on palaeoecology.

Tracing woody-organic tsunami deposits of the 2011 Tohoku-oki event in Misawa (Japan)

With a minimum of three reported waves, the 2011 Tohoku-oki tsunami’s destructive force caused massive damage along the northern Japanese Aomori coast. At Misawa the coastal control area was inundated up to 550 m inland and sandy sediment remnants can be traced to c. 350 m (c. 61–63% of the maximum inundation) from the shoreline. Linking the discovery of floatable plastic objects within a woody and organic layer to our analytical data lead to the detection of a yet undocumented woody-organic tsunami deposit first appearing on top of the sandy deposit but then reaching even further inland (approx. 69–72% of the max. inundation). By this observation our understanding of the documented part of the tsunami inundation may be improved. As a consequence, sand sheets of historic and paleo-tsunamis represent minimum estimates for the coastal inundation and underestimation may be reduced by addressing the woody and organic fraction of a tsunami’s inundation.

Molecular and isotopic evidence reveals the end-Triassic carbon isotope excursion is not from massive exogenous light carbon

The negative organic carbon isotope excursion (CIE) associated with the end-Triassic mass extinction (ETE) is conventionally interpreted as the result of a massive flux of isotopically light carbon from exogenous sources into the atmosphere (e.g., thermogenic methane and/or methane clathrate dissociation linked to the Central Atlantic Magmatic Province [CAMP]). Instead, we demonstrate that at its type locality in the Bristol Channel Basin (UK), the CIE was caused by a marine to nonmarine transition resulting from an abrupt relative sea level drop. Our biomarker and compound-specific carbon isotopic data show that the emergence of microbial mats, influenced by an influx of fresh to brackish water, provided isotopically light carbon to both organic and inorganic carbon pools in centimeter-scale water depths, leading to the negative CIE. Thus, the iconic CIE and the disappearance of marine biota at the type locality are the result of local environmental change and do not mark either the global extinction event or input of exogenous light carbon into the atmosphere. Instead, the main extinction phase occurs slightly later in marine strata, where it is coeval with terrestrial extinctions and ocean acidification driven by CAMP-induced increases in Pco₂; these effects should not be conflated with the CIE. An abrupt sea-level fall observed in the Central European basins reflects the tectonic consequences of the initial CAMP emplacement, with broad implications for all extinction events related to large igneous provinces.

Investigating Plant Micro-Remains Embedded in Dental Calculus of the Phoenician Inhabitants of Motya (Sicily, Italy)

Plant records reveal remarkable evidence about past environments and human cultures. Exploiting dental calculus analysis and using a combined approach of microscopy and gas chromatography mass spectrometry, our research outlines dietary ecology and phytomedicinal practices of the ancient community of Motya (Sicily, eight to sixth century BC), one of the most important Phoenician settlements in the Mediterranean basin. Micro-remains suggest use or consumption of Triticeae cereals, and animal-derived sources (e.g., milk and aquatic birds). Markers of grape (or wine), herbs, and rhizomes, endemic of Mediterranean latitudes and the East, provide insight into the subsistence of this colony, in terms of foodstuffs and phytotherapeutic products. The application of resins and wood of Gymnosperms for social and cultural purposes is hypothesized through the identification of Pinaceae secondary metabolites and pollen grains. The information hidden in dental calculus discloses the strong human-plant interaction in Motya’s Phoenician community, in terms of cultural traditions and land use.

A multidisciplinary approach for investigating dietary and medicinal habits of the Medieval population of Santa Severa (7th-15th centuries, Rome, Italy)

A multidisciplinary approach, combining stable isotope analysis from bone proteins and investigations on dental calculus using DNA analysis, light microscopy, and gas chromatography coupled with mass spectrometry, was applied to reconstruct dietary and medicinal habits of the individuals recovered in the cemetery of the Castle of Santa Severa (7^th-15^th centuries CE; Rome, Italy). Stable isotope analysis was performed on 120 humans, 41 faunal specimens and 8 charred seeds. Dental calculus analyses were carried out on 94 samples. Overall, isotope data indicated an omnivorous diet based on C₃-terrestrial protein, although some individuals possessed carbon values indicative of C₄ plant consumption. In terms of animal protein, the diet was probably based on cattle, sheep, pig and chicken products, as witnessed by the archaeozoological findings. Evidence from calculus suggested the consumption of C₃ cereals, Fabaceae, Fagaceae, milk and dairy products. Secondary metabolites of herbs and wine were also detected. The detection of marine fish ancient DNA, as well as of ω3 fatty acids in calculus, hypothesized the consumption of marine foodstuffs for this coastal population, despite the lack of a clear marine isotopic signal and the presence of polyunsaturated fatty acids in plant tissues. Moreover, the knowledge of ethnopharmacological tradition and the application of medicinal plants (e.g. Punica granatum L., Ephedra sp. L.) were also identified. The detection of artemisinin, known to have antimalarial properties, led to hypothesize the presence of malaria in the area. Altogether, the combined application of microscopy and biomolecular techniques provided an innovative reconstruction of Medieval lifeways in Central Italy.

Changes in soil organic matter composition after Scots pine afforestation in a native European beech forest revealed by analytical pyrolysis (Py-GC/MS)

The introduction of coniferous species in former deciduous forests may exert changes in soil organic matter, particularly in its molecular composition. In this work, pyrolysis-gas chromatography-mass spectrometry was used to study changes in SOM quality related to the centennial afforestation of Scots pine in an area formerly covered by European beech forest in the NE-flank of the Moncayo Natural Park (NE-Spain). For each soil profile three organic layers (fresh litter, fragmented litter and humified litter) and mineral soil horizons (Ah, E, Bhs and C) were studied. A total of 128 compounds were identified in the pyrograms, and composition differences were detected among the organic and mineral soil layers as well as between soils under beech and pine, for the main compound classes: nitrogen compounds, aromatics, lignin methoxyphenols, polycyclic aromatic hydrocarbons, lipids and polysaccharide-derived moieties. Such chemical differences were found to be derived from the biomass composition of the predominant vegetation type that was incorporated into the soil and from its progression into the soil profile. The analysis of the distribution of alkanes indicated higher SOM stabilization in the native beech forest soil. The signal of beech biomarkers (long chain n-alkanes C₃₁-C₃₃) found in the pine E horizon indicates the permanence of SOM derived from the natural forest ca. 100 years after the afforestation.

Tracing the sources and spatial distribution of organic carbon in subsoils using a multi-biomarker approach

Soil organic carbon (SOC) from aboveground and belowground sources has rarely been differentiated although it may drive SOC turnover and stabilization due to a presumed differing source dependent degradability. It is thus crucial to better identify the location of SOC from different sources for the parameterization of SOC models, especially in the less investigated subsoils. The aim of this study was to spatially assess contributions of organic carbon from aboveground and belowground parts of beech trees to subsoil organic carbon in a Dystric Cambisol. Different sources of SOC were distinguished by solvent-extractable and hydrolysable lipid biomarkers aided by (14)C analyses of soil compartments <63 μm. We found no effect of the distance to the trees on the investigated parameters. Instead, a vertical zonation of the subsoil was detected. A high contribution of fresh leaf- and root-derived organic carbon to the upper subsoil (leaf- and root-affected zone) indicate that supposedly fast-cycling, leaf-derived SOC may still be of considerable importance below the A-horizon. In the deeper subsoil (root-affected zone), roots were an important source of fresh SOC. Simultaneously, strongly increasing apparent (14)C ages (3860 yrs BP) indicate considerable contribution of SOC that may be inherited from the Pleistocene parent material.

"Unresolved Complex Mixture" (UCM): A brief history of the term and moving beyond it

The term "Unresolved Complex Mixture" (UCM) has been used extensively for decades to describe a gas chromatographic characteristic indicative of the presence of fossil fuel hydrocarbons (mainly petroleum hydrocarbons) in hydrocarbons isolated from aquatic samples. We chronicle the origin of the term. While it is still a useful characteristic for screening samples, more modern higher resolution two dimensional gas chromatography and gas chromatography coupled with advanced mass spectrometry techniques (Time-of-Flight or Fourier Transform-Ion Cyclotron Resonance) should be employed for analyses of petroleum contaminated samples. This will facilitate advances in understanding of the origins, fates and effects of petroleum compounds in aquatic environments.

Environmental forensics evaluation of sources of sediment hydrocarbon contamination in Milford Haven Waterway

Current and historic petroleum-related activities in Milford Haven Waterway (MHW; Wales, UK) contribute to hydrocarbon contamination of surficial sediments. Three main hydrocarbon components of sediments were analyzed: (1) aliphatic hydrocarbons of predominantly biogenic origin, representing about 5-15% of total hydrocarbons (THC); (2) polycyclic aromatic hydrocarbons (PAHs) from recent petrogenic and mainly older pyrogenic sources, representing about 2-6% of THC; (3) unresolved complex mixture from spill-related and heavily-weathered petrogenic sources, representing as much as 70-85% of THC. Environmental forensics evaluation of the data demonstrate that although 72,000 tonnes (t) crude oil spilled from the Sea Empress in 1996, the Forties blend cargo was not identified in 2010. However, using biomarkers, heavy fuel oil (HFO) from Sea Empress' bunkers (480 t spilled) was detected further upstream and more widely than previously. Iranian crude (100 t) spilled by the El Omar in 1988 and fuel (130,000 t) lost during bombing in 1940 also were tentatively identified. The PAH source ratios demonstrate that the historic pyrogenic PAHs come mainly from biomass and coal combustion. The distribution pattern of PAHs appeared more pyrogenic in 2012 than in 1996, as if recovering from the more petrogenic signature, in places, of the Sea Empress. The heavier PAH distributions were pyrogenic at most stations, and similar to those in sediments from oil terminal berths up to 2006, when dredging operations peaked. Partly as a result of this, in 2007 the concentrations of PAHs peaked throughout the waterway. Apart from effluent, atmospheric and runoff inputs, most of the identified inputs to the surficial sediments are historic. Therefore, likely processes include disturbance by construction (e.g. pile-driving) and dredging of contaminants sequestered in sediments, followed by their wide redistribution via suspended sediment transport.

Effects of different compost amendments on the abundance and composition of alkB harboring bacterial communities in a soil under industrial use contaminated with hydrocarbons

Alkane degrading microorganisms play an important role for the bioremediation of petrogenic contaminated environments. In this study, we investigated the effects of compost addition on the abundance and diversity of bacteria harboring the alkane monooxygenase gene (alkB) in an oil-contaminated soil originated from an industrial zone in Celje, Slovenia (Technosol). Soil without any amendments (control soil) and soil amended with two composts differing in their maturation stage and nutrient availability, were incubated under controlled conditions in a microcosm experiment and sampled after 0, 6, 12, and 36 weeks of incubation. As expected the addition of compost stimulated the degradation of alkanes in the investigated soil shortly after the addition. By using quantitative real-time PCR higher number of alkB genes were detected in soil samples amended with compost compared to the control soils. To get an insight into the composition of alkB harboring microbial communities, we performed next generation sequencing of amplicons of alkB gene fragment. Richness and diversity of alkB gene harboring prokaryotes was higher in soil mixed with compost compared to control soils with stronger effects of the less maturated, nutrient poor compost. The phylogenetic analysis of communities suggested that the addition of compost stimulated the abundance of alkB harboring Actinobacteria during the experiment independent from the maturation stage of the compost. AlkB harboring γ-proteobacteria like Shewanella or Hydrocarboniphaga as well as α-proteobacteria of the genus Agrobacterium responded also positively to the addition of compost to soil. The amendment of the less maturated, nutrient poor compost resulted in addition in a large increase of alkB harboring bacteria of the Cytophaga group (Microscilla) mainly at the early sampling time points. Our data indicates that compost amendments significantly change abundance and diversity pattern of alkB harboring microbes in Technosol and might be a useful agent to stimulate bioremediation of hydrocarbons in contaminated soils.

Revisiting hydrocarbons source appraisal in sediments exposed to multiple inputs

The aim of this work was to test the efficiency of statistical methods as compared to the traditional diagnostic ratios to improve hydrocarbon source identification in sediments subjected to multiple inputs. Hydrocarbon determination in Guanabara Bay sediments pointed out high degradation and ubiquitous petrogenic pollution through the presence of high unresolved complex mixture. Polycyclic aromatic hydrocarbon (PAHs) ratios suggested pervasive contamination derived from combustion in all sediments and failed discriminating samples despite the specificity of sources in different sampling sites. Principal component analysis (PCA) effectively distinguished the petrogenic imprint superimposed to the ubiquitous combustion contamination, since this technique reduces the influence of PAHs distribution which is common to all samples. PCA associated to multivariate linear regression (MLR) allowed a quantitative assessment of sources confirming predominance of the pervasive contaminant component superimposed to a generalized petrogenic imprint. The pervasive component derives from combustion contributions as well as from differential PAHs degradation.

Abrupt drainage cycles of the Fennoscandian Ice Sheet

Continental ice sheets are a key component of the Earth's climate system, but their internal dynamics need to be further studied. Since the last deglaciation, the northern Eurasian Fennoscandian Ice Sheet (FIS) has been connected to the Black Sea (BS) watershed, making this basin a suitable location to investigate former ice-sheet dynamics. Here, from a core retrieved in the BS, we combine the use of neodymium isotopes, high-resolution elemental analysis, and biomarkers to trace changes in sediment provenance and river runoff. We reveal cyclic releases of meltwater originating from Lake Disna, a proglacial lake linked to the FIS during Heinrich Stadial 1. Regional interactions within the climate-lake-FIS system, linked to changes in the availability of subglacial water, led to abrupt drainage cycles of the FIS into the BS watershed. This phenomenon raised the BS water level by ∼100 m until the sill of the Bosphorus Strait was reached, flooding the vast northwestern BS shelf and deeply affecting the hydrology and circulation of the BS and, probably, of the Marmara and Aegean Seas.

Plant litter and soil type drive abundance, activity and community structure of alkB harbouring microbes in different soil compartments

Alkanes are major constituents of plant-derived waxy materials. In this study, we investigated the abundance, community structure and activity of bacteria harbouring the alkane monooxygenase gene alkB, which catalyses a major step in the pathway of aerobic alkane degradation in the litter layer, the litter-soil interface and in bulk soil at three time points during the degradation of maize and pea plant litter (2, 8 and 30 weeks) to improve our understanding about drivers for microbial performance in different soil compartments. Soil cores of different soil textures (sandy and silty) were taken from an agricultural field and incubated at constant laboratory conditions. The abundance of alkB genes and transcripts (by qPCR) as well as the community structure (by terminal restriction fragment polymorphism fingerprinting) were measured in combination with the concentrations and composition of alkanes. The results obtained indicate a clear response pattern of all investigated biotic and abiotic parameters depending on the applied litter material, the type of soil used, the time point of sampling and the soil compartment studied. As expected the distribution of alkanes of different chain length formed a steep gradient from the litter layer to the bulk soil. Mainly in the two upper soil compartments community structure and abundance patterns of alkB were driven by the applied litter type and its degradation. Surprisingly, the differences between the compartments in one soil were more pronounced than the differences between similar compartments in the two soils studied. This indicates the necessity for analysing processes in different soil compartments to improve our mechanistic understanding of the dynamics of distinct functional groups of microbes.

Organic matter compounds as source indicators and tracers for marine pollution in a western Mediterranean coastal zone

INTRODUCTION

Complex organic compounds found in oil and sediments linked with a particular source (such as algae, bacteria or vascular plants) are defined as biomarkers and are useful dating indicators in organic geochemistry.

METHODS AND RESULTS

This paper presents the composition of the organic matter (OM) on marine surface sediments from a degraded Tunisian coast analysed by pyrolysis and gas chromatography-mass spectrometry (GC-MS). High total OM contents (0.3-4.2%) were detected with high levels of saturated linear hydrocarbons. The aliphatic lipids had contributed with up to 11.7% of the total OM, and their distribution had consisted of resolved compounds (n-alkanes and fatty acid (FAs)) and an unresolved complex mixture. Hydrocarbons, primarily n-alkanes, were ranged from 368 to 3,886 μg g(-1). The FAs (674-2,568 μg g(-1)) were dominated by derived primary production, and the short chain FAs (C16 and C18) were the most abundant throughout. The ubiquitous presence of petroleum contamination, mainly from offshore oil exploration, discharge of pollutants from rivers, shipping activities and atmospheric deposition was found in all samples. The Gabès littoral seems to be quite to very polluted near the industrial zone of Ghannouch. The C/H ratio (generally around 5.9), the thermal analysis and GC-MS of n-alkanes and FAs showed that the OM in the studied area was composed of anthropogenic/petrogenic, marine and continental sources.

CONCLUSIONS

Our study represents an innovative approach to assessing environmental pollution. The evaluation of organic matter by examination of sterols, alkanes and fatty acids allows the identification of source, both anthropogenic and natural.

Chemical and pharmacological observations on some Hebe species

Examination of oven-dried leaves and twigs of four species of Hebe indigenous to New Zealand—H. stricta, H. odora, H. bollonsii and H. corriganii—has revealed D-mannitol and condensed tannins to be major constituents. Identification of some of the minor constituents, namely alkanes, fatty acids and aliphatic alcohols was achieved by means of gas-liquid chromatography. Pharmacological studies with the condensed tannin fractions of H. stricta and H. odora have indicated that the reputation of H. stricta as a constipatory agent is attributable to tannins; this agrees with earlier assumptions.

Electrical generation of natural aerosols from vegetation

It is suggested that an alternative, or additional, source of the blue haze above heavily forested areas may be the generation of submicrometer-sized wax particles by the action of strong electrical fields at the tips of pine needles and other wax-covered plant surfaces. Exposure of pine needles to high potential gradients results in the production of airborne wax particles with diameters less than 0.6 micrometer.

Saturated hydrocarbons in bovine liver

A homologous series of n-alkanes (C(14)-C(33)) and two isoprenoid hydrocarbons, 2,6,10,14-tetramethylhexadecane (phytane) and 2,6,10,14-tetramethylpentadecane (pristane) have been identified in bovine liver. Another branched but non-isoprenoid alkane and three isomers of molecular formula C(20)H(40) were partially identified. Phytane and the C(18)-C(22) and C(29)-C(33)n-alkanes were found to be the major components in liver, suggesting that at least the main hydrocarbon components were derived from various plants in the diet. The hydrocarbons were separated and identified by a series of steps involving solvent extraction, saponification, elution chromatography on alumina and silica gel columns, molecular sieving and by infrared and ultraviolet spectroscopy, followed by combined capillary gas chromatography-mass spectrometry.

THE EFFECT OF CULTURE CONDITIONS ON THE HYDROCARBON CONTENT OF CHLORELLA VULGARIS(1) (2)

Cultures of Chlorella vulgaris were grown aulo-trophically under fluorescent light and heterotrophically on glucose and inorganic salts. Hydrocarbons were extracted and analyzed by gas-liquid chromatography, molecular sieve separations, and silicic acid-AgNO3 chromatography. Chlorella vulgaris grown under both culture conditions contained a series of saturated n-paraffins ranging from 17 to 36 carbon atoms in length. This is in contrast to reports in the early literature which indicated that the hydrocarbon fraction of algae was composed of only 1 or 2 specific hydrocarbons. Only under heterotrophic conditions, however, did C. vulgaris produce 1-penta-cosene and 1-heptacosene as the primary components of the hydrocarbon mixture. Other Chlorella species were examined, but only C. vulgaris produced significant quantities of these compounds.

Paraffinic Hydrocarbons in Pasture Plants

The gas chromatographicmass spectrometric technique recently developed by Ryhage has been applied to the analysis of paraffins extracted from pasture plants, specifically, whole plant and leaves of spotted bur clover (Medicago arabica). Normal alkanes from C(18) to C(35) have been found. The C(29), C(31), and C(33) normal saturated hydrocarbons predominate and n-C(31) is the major component. In the range from C(24) to C(34) the ratio of alkanes with an even number of carbon atoms to those with an odd number is approximately 8 for the whole plant and 5 for the leaves. The distribution of paraffins is similar to that reported for cattle manure and also resembles that of some soils and sediments.

Fatty Acids in Pollen of Some Coniferous Species

Fatty acids in pollen of five coniferous species were isolated and analyzed by gas-liquid chromatography. It was found that 0.76 to 0.89 percent of the dry weight of pollen was fatty acid in three species of Pseudotsuga and 1.25 to 1.33 percent in two species of Pinus. Major components in Pseudotsuga were oleic, palmitic, and linoleic acids, whereas in Pinus they were linolenic, oleic, palmitic, and stearic acids.