ENERGY REQUIREMENT FOR MICROBIAL GROWTH

Effects of Contagious Respiratory Pathogens on Breath Biomarkers

Due to their immediate exhalation after generation at the cellular/microbiome levels, exhaled volatile organic compounds (VOCs) may provide real-time information on pathophysiological mechanisms and the host response to infection. In recent years, the metabolic profiling of the most frequent respiratory infections has gained interest as it holds potential for the early, non-invasive detection of pathogens and the monitoring of disease progression and the response to therapy. Using previously unpublished data, randomly selected individuals from a COVID-19 test center were included in the study. Based on multiplex PCR results (non-SARS-CoV-2 respiratory pathogens), the breath profiles of 479 subjects with the presence or absence of flu-like symptoms were obtained using proton-transfer-reaction time-of-flight mass spectrometry. Among 223 individuals, one respiratory pathogen was detected in 171 cases, and more than one pathogen in 52 cases. A total of 256 subjects had negative PCR test results and had no symptoms. The exhaled VOC profiles were affected by the presence of Haemophilus influenzae, Streptococcus pneumoniae, and Rhinovirus. The endogenous ketone, short-chain fatty acid, organosulfur, aldehyde, and terpene concentrations changed, but only a few compounds exhibited concentration changes above inter-individual physiological variations. Based on the VOC origins, the observed concentration changes may be attributed to oxidative stress and antioxidative defense, energy metabolism, systemic microbial immune homeostasis, and inflammation. In contrast to previous studies with pre-selected patient groups, the results of this study demonstrate the broad inter-individual variations in VOC profiles in real-life screening conditions. As no unique infection markers exist, only concentration changes clearly above the mentioned variations can be regarded as indicative of infection or colonization.

In silico genome-scale reconstruction and validation of the Staphylococcus aureus metabolic network

A genome-scale metabolic model of the Gram-positive, facultative anaerobic opportunistic pathogen Staphylococcus aureus N315 was constructed based on current genomic data, literature, and physiological information. The model comprises 774 metabolic processes representing approximately 23% of all protein-coding regions. The model was extensively validated against experimental observations and it correctly predicted main physiological properties of the wild-type strain, such as aerobic and anaerobic respiration and fermentation. Due to the frequent involvement of S. aureus in hospital-acquired bacterial infections combined with its increasing antibiotic resistance, we also investigated the clinically relevant phenotype of small colony variants and found that the model predictions agreed with recent findings of proteome analyses. This indicates that the model is useful in assisting future experiments to elucidate the interrelationship of bacterial metabolism and resistance. To help directing future studies for novel chemotherapeutic targets, we conducted a large-scale in silico gene deletion study that identified 158 essential intracellular reactions. A more detailed analysis showed that the biosynthesis of glycans and lipids is rather rigid with respect to circumventing gene deletions, which should make these areas particularly interesting for antibiotic development. The combination of this stoichiometric model with transcriptomic and proteomic data should allow a new quality in the analysis of clinically relevant organisms and a more rationalized system-level search for novel drug targets.

Energy conservation in chemotrophic anaerobic bacteria

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Carbon dioxide inhibition of yeast growth in biomass production

Saccharomyces cerevisiae was grown under aerobic and substrate-limiting conditions for efficient biomass production. Under these conditions, where the sugar substrate was fed incrementally, the growth pattern of the yeast cells was found to be uniform, as indicated by a constant respiratory quotient during the entire growing period. The effect of carbon dioxide was investigated by replacing portions of the nitrogen in the air stream with carbon dioxide, while maintaining the oxygen content at the normal 20% level, so that identical oxygen transfer rate and atmospheric pressure were maintained for all experiments with different partial pressures of carbon dioxide. Inhibition of yeast growth was negligible below 20% CO2 in the aeration mixture. Slight inhibition was noted at the 40% CO2 level and significant inhibition was noted above the 50% CO2 level, corresponding to 1.6 X 10(-2)M of dissolved CO2 in the fermentor broth. High carbon dioxide content in the gas phase also inhibited the fermentation activity of baker's yeast.

Molar growth yields of certain lactic acid bacteria as influenced by autolysis

Molar growth yields determined from batch cultures of Streptococcus diacetilactis and S. faecalis were appreciably greater at the peaks of maximal growth than after continued incubation and considerable autolysis. The higher molar growth yields were about equal to those determined in a continuous culture. Autolysis during logarithmic growth was minimal. The average Y value for adenosine triphosphate (ATP), determined by using limiting concentrations of glucose, galactose, lactose, and maltose for growing S. diacetilactis and limiting concentrations of glucose for growing S. lactis, S. cremoris, and S. faecalis, was 17.0. This is close to the Y (arginine) value of 17.8 determined with S. faecalis, but 62% greater than the generally accepted value of 10.5. Data are presented indicating that the often-used Y (ATP) value of 10.5 is erroneously low.

Energy supply and cell yield in aerobically growth microorganisms

Cell yields of Pseudomonas fluorescens, Aerobacter cloacae UW-C83, Escherichia coli K-12, Candida utilis UW-3, and Saccharomyces carlsbergensis UW-110 grown aerobically on several carbon sources are reported. The Y(atp) concept is discussed in relation to the yields on oxygen and to assumed P to O ratios for bacteria and reported P to O ratios for yeast.

Bacterial growth as a practical indicator of extensive biodegradability of organic compounds

The proportionality of growth, as indicated by turbidity of cultures of Pseudomonas C12B, to the initial concentration of sodium dodecyl sulfate, dodecanol, or a mixture of C(10)-C(20) secondary alcohol sulfates, each provided as sole carbon source in basal mineral salts medium, was demonstrated. Subsequently, the direct correlation of culture turbidity as a growth indicator and degradation of sodium dodecyl sulfate and the C(10)-C(20) compounds was established. Degradation of these detergents was measured by the rise in surface tension and the decrease in methylene blue values, respectively. Turbidimetry was found to be a poor indicator of degradation of dodecanol in the early hours of culture, however, and did not correlate over a significant range with degradation of substrate. Viable cell counts did parallel dodecanol degradation as measured by gas-liquid chromatography. The use of bacterial growth as a reliable, quantitative, and easily measured parameter indicating biodegradability was suggested for those organic compounds which can be shown to serve as a carbon source for a bacterium.