1
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Van Mulders L, Locquet L, Kaandorp C, Janssens GPJ. An overview of nutritional factors in the aetiopathogenesis of myocardial fibrosis in great apes. Nutr Res Rev 2024:1-16. [PMID: 38343129 DOI: 10.1017/s0954422424000076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/08/2024]
Abstract
The main cause of mortality in great apes in zoological settings is cardiovascular disease (CVD), affecting all four taxa: chimpanzee (Pan troglodytes), bonobo (Pan paniscus), gorilla (Gorilla spp.) and orangutan (Pongo spp.). Myocardial fibrosis, the most typical histological characterisation of CVD in great apes, is non-specific, making it challenging to understand the aetiopathogenesis. A multifactorial origin of disease is assumed whereby many potential causative factors are directly or indirectly related to the diet, which in wild-living great apes mainly consists of high-fibre, low-carbohydrate and very low-sodium components. Diets of great apes housed in zoological settings are often different compared with the situation in the wild. Moreover, low circulating vitamin D levels have recently been recognised in great apes housed in more northern regions. Evaluation of current supplementation guidelines shows that, despite implementation of different dietary strategies, animals stay vitamin D insufficient. Therefore, recent hypotheses designate vitamin D deficiency as a potential underlying factor in the pathogenesis of myocardial fibrosis. The aim of this literature review is to: (i) examine important differences in nutritional factors between zoological and wild great ape populations; (ii) explain the potential detrimental effects of the highlighted dietary discrepancies on cardiovascular function in great apes; and (iii) elucidate specific nutrition-related pathophysiological mechanisms that may underlie the development of myocardial fibrosis. This information may contribute to understanding the aetiopathogenesis of myocardial fibrosis in great apes and pave the way for future clinical studies and a more preventive approach to great ape CVD management.
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Affiliation(s)
- Laurens Van Mulders
- Faculty of Veterinary Medicine, Ghent University, Merelbeke, Belgium
- Royal Zoological Society of Antwerp (KMDA), Antwerpen, Belgium
| | - Laurent Locquet
- Department of Veterinary Medicine and Sciences, University of Notingham, Nottingham, UK
- Dick White Referrals, Cambridgeshire, UK
| | - Christine Kaandorp
- Safari Park Beekse Bergen, Hilvarenbeek, The Netherlands
- Gaia zoo, Kerkrade, The Netherlands
- Zooparc Overloon, Overloon, The Netherlands
- Dierenrijk, Mierlo, The Netherlands
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2
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Cetkovská E, Brandlová K, Ogden R, Černá Bolfíková B. Evaluation of the Impact of Population Management on the Genetic Parameters of Selected Spiral-Horned Antelopes. BIOLOGY 2024; 13:104. [PMID: 38392322 PMCID: PMC10886411 DOI: 10.3390/biology13020104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Revised: 01/25/2024] [Accepted: 01/30/2024] [Indexed: 02/24/2024]
Abstract
The rapid loss of biodiversity and the associated reduction and fragmentation of habitats means that ex situ populations have become an important part of species conservation. These populations, which are often established from a small number of founders, require careful management to avoid the negative effects of genetic drift and inbreeding. Although the inclusion of molecular data is recommended, their availability for captive breeding management remains limited. The aim of this study was to evaluate the relationship between the levels of genetic diversity in six spiral-horned antelope taxa bred under human care and their respective management strategies, conservation status, demography, and geographic origin, using 10 nuclear DNA microsatellite loci and mitochondrial control region DNA sequences. Our findings include associations between genetic diversity and management intensity but also with the diversity and contribution of wild populations to captive founders, with some populations apparently composed of animals from divergent wild lineages elevating captive genetic diversity. When population sizes are large, the potential advantages of maximizing genetic diversity in widely outcrossed populations may need careful consideration with respect to the potential disruption of adaptive diversity. Genetic data serve as a robust tool for managing captive populations, yet their interpretation necessitates a comprehensive understanding of species biology and history.
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Affiliation(s)
- Ema Cetkovská
- Faculty of Tropical AgriSciences, Czech University of Life Sciences Prague, Kamycka 129, 16500 Prague, Czech Republic
| | - Karolína Brandlová
- Faculty of Tropical AgriSciences, Czech University of Life Sciences Prague, Kamycka 129, 16500 Prague, Czech Republic
| | - Rob Ogden
- Royal (Dick) School of Veterinary Studies and the Roslin Institute, University of Edinburgh, Midlothian EH25 9RG, UK
| | - Barbora Černá Bolfíková
- Faculty of Tropical AgriSciences, Czech University of Life Sciences Prague, Kamycka 129, 16500 Prague, Czech Republic
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3
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Koops K, Humle T, Frandsen P, Fitzgerald M, D'Auvergne L, Jackson HA, Børsting C, Siegismund HR, Soumah AG, Hvilsom C. Genetics as a novel tool in mining impact assessment and biomonitoring of critically endangered western chimpanzees in the Nimba Mountains, Guinea. CONSERVATION SCIENCE AND PRACTICE 2023. [DOI: 10.1111/csp2.12898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/18/2023] Open
Affiliation(s)
- Kathelijne Koops
- Ape Behaviour & Ecology Group, Department of Evolutionary Anthropology University of Zurich Zurich Switzerland
- Department of Archaeology University of Cambridge Cambridge UK
| | - Tatyana Humle
- Durrell Institute of Conservation and Ecology, School of Anthropology and Conservation University of Kent Kent UK
| | - Peter Frandsen
- Research and Conservation Copenhagen Zoo Copenhagen Denmark
| | - Maegan Fitzgerald
- Department of Ecology and Conservation Biology Texas A&M University College Station Texas USA
| | - Lucy D'Auvergne
- Durrell Institute of Conservation and Ecology, School of Anthropology and Conservation University of Kent Kent UK
| | - Hazel A. Jackson
- Durrell Institute of Conservation and Ecology, School of Anthropology and Conservation University of Kent Kent UK
| | - Claus Børsting
- Department of Forensic Medicine University of Copenhagen Copenhagen Denmark
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4
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The mitochondrial DNA diversity of captive ruffed lemurs ( Varecia spp.): implications for conservation. ORYX 2023. [DOI: 10.1017/s0030605322000643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023] Open
Abstract
Abstract
Ruffed lemurs (Varecia variegata and Varecia rubra) are categorized as Critically Endangered on the IUCN Red List, and genetic studies are needed for assessing the conservation value of captive populations. Using 280 mitochondrial DNA (mtDNA) D-loop sequences, we studied the genetic diversity and structure of captive ruffed lemurs in Madagascar, Europe and North America. We found 10 new haplotypes: one from the European captive V. rubra population, three from captive V. variegata subcincta (one from Europe and two from Madagascar) and six from other captive V. variegata in Madagascar. We found low mtDNA genetic diversity in the European and North American captive populations of V. variegata. Several founder individuals shared the same mtDNA haplotype and therefore should not be assumed to be unrelated founders when making breeding recommendations. The captive population in Madagascar has high genetic diversity, including haplotypes not yet identified in wild populations. We determined the probable geographical provenance of founders of captive populations by comparison with previous studies; all reported haplotypes from captive ruffed lemurs were identical to or clustered with haplotypes from wild populations located north of the Mangoro River in Madagascar. Effective conservation strategies for wild populations, with potentially unidentified genetic diversity, should still be considered the priority for conserving ruffed lemurs. However, our results illustrate that the captive population in Madagascar has conservation value as a source of potential release stock for reintroduction or reinforcement projects and that cross-regional transfers within the global captive population could increase the genetic diversity and therefore the conservation value of each regional population.
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5
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Sarringhaus L, Lewton KL, Iqbal S, Carlson KJ. Ape femoral-humeral rigidities and arboreal locomotion. AMERICAN JOURNAL OF BIOLOGICAL ANTHROPOLOGY 2022; 179:624-639. [PMID: 36790629 PMCID: PMC9828227 DOI: 10.1002/ajpa.24632] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2021] [Revised: 06/29/2022] [Accepted: 09/13/2022] [Indexed: 11/07/2022]
Abstract
OBJECTIVES This study investigates patterns of bone functional adaptations in extant apes through comparing hindlimb to forelimb bone rigidity ratios in groups with varying levels of arboreality. MATERIALS AND METHODS Using CT scans, bone rigidity (J) was calculated at three regions of interest (ROI) along femoral and humeral diaphyses in Homo, Pongo, Pan, and Gorilla with further comparisons made between species and subspecies divisions within Pan and Gorilla. RESULTS Consistent with previous work on extant hominoids, species exhibited differences in midshaft femoral to humeral (F/H) rigidity ratios. Results of the present study confirm that these midshaft differences extend to 35% and 65% diaphyseal ROIs. Modern humans, exhibiting larger ratios, and orangutans, exhibiting smaller ratios, bracketed the intermediate African apes in comparisons. Within some African apes, limb rigidity ratios varied significantly between taxonomic groups. Eastern gorillas exhibited the highest mean ratios and chimpanzees the lowest at all three ROIs. In posthoc comparisons, chimpanzees and bonobos did not differ in relative limb rigidity ratios at any of the three ROIs. However, western gorillas were more similar to bonobos than eastern gorillas at 50% and 35% ROIs, but not at the 65% ROI. CONCLUSION Species, and to a lesser extent subspecies, can be distinguished by F/H limb rigidity ratios according to broad positional behavior patterns at multiple regions of interest along the diaphyses. Similarity of bonobos and western gorillas is in line with behavioral data of bonobos being the most terrestrial of Pan species, and western gorillas the most arboreal of the Gorilla groups.
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Affiliation(s)
- Lauren Sarringhaus
- Department of Evolutionary Anthropology, Duke University, Durham, North Carolina, USA
- Department of Anthropology, University of Michigan, Ann Arbor, Michigan, USA
- Department of Biology, James Madison University, Harrisonburg, Virginia, USA
| | - Kristi L Lewton
- Department of Integrative Anatomical Sciences, Keck School of Medicine, University of Southern California, Los Angeles, California, USA
| | - Safiyyah Iqbal
- School of Animal, Plant and Environmental Sciences, University of the Witwatersrand, Johannesburg, South Africa
| | - Kristian J Carlson
- Department of Integrative Anatomical Sciences, Keck School of Medicine, University of Southern California, Los Angeles, California, USA
- Evolutionary Studies Institute, University of the Witwatersrand, Johannesburg, South Africa
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6
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Shukla N, Shaban B, Gallego Romero I. Genetic Diversity in Chimpanzee Transcriptomics Does Not Represent Wild Populations. Genome Biol Evol 2021; 13:6426081. [PMID: 34788801 PMCID: PMC8633730 DOI: 10.1093/gbe/evab247] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/01/2021] [Indexed: 11/13/2022] Open
Abstract
Chimpanzees (Pan troglodytes) are a genetically diverse species, consisting of four highly distinct subspecies. As humans' closest living relative, they have been a key model organism in the study of human evolution, and comparisons of human and chimpanzee transcriptomes have been widely used to characterize differences in gene expression levels that could underlie the phenotypic differences between the two species. However, the subspecies from which these transcriptomic data sets have been derived is not recorded in metadata available in the public NCBI Sequence Read Archive (SRA). Furthermore, labeling of RNA sequencing (RNA-seq) samples is for the most part inconsistent across studies, and the true number of individuals from whom transcriptomic data are available is difficult to ascertain. Thus, we have evaluated genetic diversity at the subspecies and individual level in 486 public RNA-seq samples available in the SRA, spanning the vast majority of public chimpanzee transcriptomic data. Using multiple population genetics approaches, we find that nearly all samples (96.6%) have some degree of Western chimpanzee ancestry. At the individual donor level, we identify multiple samples that have been repeatedly analyzed across different studies and identify a total of 135 genetically distinct individuals within our data, a number that falls to 89 when we exclude likely first- and second-degree relatives. Altogether, our results show that current transcriptomic data from chimpanzees are capturing low levels of genetic diversity relative to what exists in wild chimpanzee populations. These findings provide important context to current comparative transcriptomics research involving chimpanzees.
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Affiliation(s)
- Navya Shukla
- School of BioSciences, The University of Melbourne, Parkville, Victoria, Australia.,Melbourne Integrative Genomics, University of Melbourne, Parkville, Victoria, Australia
| | - Bobbie Shaban
- Melbourne Integrative Genomics, University of Melbourne, Parkville, Victoria, Australia
| | - Irene Gallego Romero
- School of BioSciences, The University of Melbourne, Parkville, Victoria, Australia.,Melbourne Integrative Genomics, University of Melbourne, Parkville, Victoria, Australia.,Centre for Stem Cell Systems, Faculty of Medicine, Dentistry and Health Sciences, The University of Melbourne, Parkville, Victoria, Australia.,Center for Genomics, Evolution and Medicine, Institute of Genomics, University of Tartu, Estonia
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7
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Leeflang HL, Van Dongen S, Helsen P. Mother’s curse on conservation: assessing the role of mtDNA in sex‐specific survival differences in ex‐situ breeding programs. Anim Conserv 2021. [DOI: 10.1111/acv.12740] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- H. L. Leeflang
- Centre for Research and Conservation Royal Zoological Society of Antwerp Antwerp Belgium
| | - S. Van Dongen
- Department of Biology Evolutionary Ecology Group University of Antwerp Wilrijk Belgium
| | - P. Helsen
- Centre for Research and Conservation Royal Zoological Society of Antwerp Antwerp Belgium
- Department of Biology Evolutionary Ecology Group University of Antwerp Wilrijk Belgium
- Department of Biology Ghent University Ghent Belgium
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8
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Palmer A, Sommer V, Msindai JN. Hybrid apes in the Anthropocene: Burden or asset for conservation? PEOPLE AND NATURE 2021; 3:573-586. [PMID: 34805779 PMCID: PMC8581989 DOI: 10.1002/pan3.10214] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Accepted: 04/01/2021] [Indexed: 11/08/2022] Open
Abstract
Conservationists often view hybrid animals as problematic, at least if anthropogenic influence caused the intermixing to occur. However, critics propose that humans should respect non-human autonomy, reject and accept the creatures they have helped to create.Based on two case studies of our own ethological, genetic and ethnographic research about chimpanzee and orangutan subspecies hybrids, we assess what, if anything, should be done about such animals. We consider problems posed by cross-bred apes relating to: (a) Breeding-Do hybrids really experience reduced reproductive success? How are population-level concerns and welfare of individual animals balanced in conservation breeding? (b) Essentialism-Are anti-hybrid arguments based on essentialist or purist thinking? Does essentialism vary by conservation context? (c) Pragmatism-How do socio-economic circumstances influence whether hybrids are embraced or ignored? Does the erosion of 'untouched nature' render hybrids more important?We show that answers to these questions are complex and context-specific, and that therefore decisions should be made on a case-by-case basis. For example, we find that anti-hybrid arguments are essentialist in some cases (e.g. ape management in zoos) but not in others (e.g. ape reintroduction). Thus, rather than present recommendations, we conclude by posing nine questions that conservationists should ask themselves when making decisions about taxonomic hybrids. A free Plain Language Summary can be found within the Supporting Information of this article.
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Affiliation(s)
- Alexandra Palmer
- School of Geography and the EnvironmentUniversity of OxfordOxfordUK
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9
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Frandsen P, Fontsere C, Nielsen SV, Hanghøj K, Castejon-Fernandez N, Lizano E, Hughes D, Hernandez-Rodriguez J, Korneliussen TS, Carlsen F, Siegismund HR, Mailund T, Marques-Bonet T, Hvilsom C. Targeted conservation genetics of the endangered chimpanzee. Heredity (Edinb) 2020; 125:15-27. [PMID: 32346130 DOI: 10.1038/s41437-020-0313-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Revised: 03/31/2020] [Accepted: 03/31/2020] [Indexed: 11/09/2022] Open
Abstract
Populations of the common chimpanzee (Pan troglodytes) are in an impending risk of going extinct in the wild as a consequence of damaging anthropogenic impact on their natural habitat and illegal pet and bushmeat trade. Conservation management programmes for the chimpanzee have been established outside their natural range (ex situ), and chimpanzees from these programmes could potentially be used to supplement future conservation initiatives in the wild (in situ). However, these programmes have often suffered from inadequate information about the geographical origin and subspecies ancestry of the founders. Here, we present a newly designed capture array with ~60,000 ancestry informative markers used to infer ancestry of individual chimpanzees in ex situ populations and determine geographical origin of confiscated sanctuary individuals. From a test panel of 167 chimpanzees with unknown origins or subspecies labels, we identify 90 suitable non-admixed individuals in the European Association of Zoos and Aquaria (EAZA) Ex situ Programme (EEP). Equally important, another 46 individuals have been identified with admixed subspecies ancestries, which therefore over time, should be naturally phased out of the breeding populations. With potential for future re-introduction to the wild, we determine the geographical origin of 31 individuals that were confiscated from the illegal trade and demonstrate the promises of using non-invasive sampling in future conservation action plans. Collectively, our genomic approach provides an exemplar for ex situ management of endangered species and offers an efficient tool in future in situ efforts to combat the illegal wildlife trade.
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Affiliation(s)
- Peter Frandsen
- Research and Conservation, Copenhagen Zoo, Roskildevej 38, 2000, Frederiksberg, Denmark. .,Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200, Copenhagen, Denmark.
| | - Claudia Fontsere
- Institute of Evolutionary Biology, (UPF-CSIC), PRBB, Dr. Aiguader 88, 08003, Barcelona, Spain.
| | - Svend Vendelbo Nielsen
- Bioinformatics Research Center, Department of Mathematics, Aarhus University, C. F. Møllers Allé 8, 8000, Aarhus C, Denmark
| | - Kristian Hanghøj
- Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200, Copenhagen, Denmark
| | - Natalia Castejon-Fernandez
- Bioinformatics Research Center, Department of Mathematics, Aarhus University, C. F. Møllers Allé 8, 8000, Aarhus C, Denmark
| | - Esther Lizano
- Institute of Evolutionary Biology, (UPF-CSIC), PRBB, Dr. Aiguader 88, 08003, Barcelona, Spain.,Institut Català de Paleontologia Miquel Crusafant, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Cerdanyala del Vallès, 08193, Barcelona, Spain
| | - David Hughes
- MRC Integrative Epidemiology Unit at University of Bristol, Bristol, BS8 2BN, UK.,Population Health Sciences, Bristol Medical School, University of Bristol, Bristol, BS8 2BN, UK
| | | | - Thorfinn Sand Korneliussen
- GLOBE, Section for Geogenetics, Øster Voldgade 5-7, 1350, Copenhagen, Denmark.,National Research University, Higher School of Economics, 20 Myasnitskaya Ulitsa, 101000, Moscow, Russia
| | - Frands Carlsen
- Research and Conservation, Copenhagen Zoo, Roskildevej 38, 2000, Frederiksberg, Denmark
| | - Hans Redlef Siegismund
- Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200, Copenhagen, Denmark
| | - Thomas Mailund
- Bioinformatics Research Center, Department of Mathematics, Aarhus University, C. F. Møllers Allé 8, 8000, Aarhus C, Denmark
| | - Tomas Marques-Bonet
- Institute of Evolutionary Biology, (UPF-CSIC), PRBB, Dr. Aiguader 88, 08003, Barcelona, Spain.,Institut Català de Paleontologia Miquel Crusafant, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Cerdanyala del Vallès, 08193, Barcelona, Spain.,Catalan Institution of Research and Advanced Studies (ICREA), Passeig de Lluís Companys 23, 08010, Barcelona, Spain.,CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Baldiri I Reixac, 408028, Barcelona, Spain
| | - Christina Hvilsom
- Research and Conservation, Copenhagen Zoo, Roskildevej 38, 2000, Frederiksberg, Denmark
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10
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Jensen EL, McClenaghan B, Ford B, Lentini A, Kerr KCR, Russello MA. Genotyping on the ark: A synthesis of genetic resources available for species in zoos. Zoo Biol 2020; 39:257-262. [DOI: 10.1002/zoo.21539] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2019] [Revised: 11/21/2019] [Accepted: 03/09/2020] [Indexed: 01/23/2023]
Affiliation(s)
- Evelyn L. Jensen
- Department of BiologyUniversity of British Columbia Okanagan Kelowna Canada
- Department of Ecology and Evolutionary BiologyYale University New Haven
| | - Beverly McClenaghan
- Wildlife and Science DivisionToronto Zoo Toronto
- Centre for Environmental Genomics ApplicationseDNAtec Inc. St. John's Canada
| | - Brett Ford
- Department of BiologyUniversity of British Columbia Okanagan Kelowna Canada
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11
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Caspers LM, Ferrie GM, Wolfe K, Hoffman EA. Subspecific identity and a comparison of genetic diversity between wild and ex situ wildebeest. Zoo Biol 2020; 39:129-140. [PMID: 31904139 DOI: 10.1002/zoo.21530] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2019] [Revised: 08/01/2019] [Accepted: 12/18/2019] [Indexed: 11/11/2022]
Abstract
The original North American ex situ wildebeest population was believed to originate from the white-bearded wildebeest (Connochaetes taurinus albojubatus), which is both morphologically distinct and geographically separated from the brindled wildebeest (C. t. taurinus). However, after an import of wildebeest into North America in 2001, managers have suspected that white-bearded and brindled wildebeest were mixed in herds at multiple institutions. We sequenced the mitochondrial control region (d-loop) from a portion of the managed North American population and compared our sequences with previously published sequences from wild individuals to determine the subspecific identity and genetic diversity of our ex situ population. We were able to confidently identify C. t. albojubatus as the subspecies identity of the sampled portion of our population. Within our population, haplotype and nucleotide diversity were low (0.169 and 0.001, respectively) with a single common haplotype (H1) containing 41 of the 45 individuals sequenced, while two rare haplotypes (H2 and H3) were derived from three individuals and a single individual, respectively. Nucleotide and haplotype diversity were greater overall in the wild populations compared with our managed population. However, C. t. albojubatus was found to exhibit lower nucleotide diversity in both wild and ex situ populations when compared to other wild subspecies. Though the overall goal of the North American wildebeest population is for public education and not reintroduction, maintaining genetic diversity is vital for the long-term viability of this managed population, which may benefit from periodic supplementation of wild animals.
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Affiliation(s)
- Lauren M Caspers
- Department of Biology, University of Central Florida, Orlando, Florida
| | - Gina M Ferrie
- Disney's Animals, Science, and Environment, Disney's Animal Kingdom, Lake Buena Vista, Florida
| | - Kristen Wolfe
- Disney's Animals, Science, and Environment, Disney's Animal Kingdom, Lake Buena Vista, Florida
| | - Eric A Hoffman
- Department of Biology, University of Central Florida, Orlando, Florida
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12
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Longevity and mortality of captive chimpanzees in Japan from 1921 to 2018. Primates 2019; 60:525-535. [DOI: 10.1007/s10329-019-00755-8] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Accepted: 09/09/2019] [Indexed: 10/25/2022]
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13
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Garcia M, Dunn JC. No evidence that maximum fundamental frequency reflects selection for signal diminution in bonobos. Curr Biol 2019; 29:R732-R733. [PMID: 31386845 DOI: 10.1016/j.cub.2019.06.022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
Acoustic allometry consists of looking at how an organism's body size scales with the characteristics of its vocalizations. A typical finding based on this framework is that across mammals body size is reflected in the fundamental frequency (fo) of vocalizations, whereby lower fo indicates larger body size [1]. This relationship holds owing to the fact that vocal fold length generally scales with body size [2]. Cross-species comparisons allow for the identification of interesting outliers from the body size-f0 regression [3]. Such cases are of particular relevance as they can provide insight into the selective forces potentially driving deviations from standard allometric principles [2]. In a recent study in Current Biology, Grawunder et al.[4] argue that selective pressure for higher f0 has led to the evolution of shorter vocal folds in bonobos than in chimpanzees. Thus, they claim, vocal fold length has evolved independently of body size in bonobos for the purposes of signal diminution (i.e., reducing the impression of body size that they advertise through their calls). However, considering both the existing literature and their own data, this conclusion does not appear to be supported for several reasons.
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Affiliation(s)
- Maxime Garcia
- Animal Behaviour, Department of Evolutionary Biology and Environmental Science, University of Zurich, Winterthurerstrasse 190, 8051, Zurich, Switzerland
| | - Jacob C Dunn
- Behavioural Ecology Research Group, Anglia Ruskin University, East Road, Cambridge, CB1 1PT, UK; Biological Anthropology, Department of Archaeology, University of Cambridge, Fitzwilliam St, Cambridge, CB2 1QH, UK.
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14
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Wroblewski EE, Parham P, Guethlein LA. Two to Tango: Co-evolution of Hominid Natural Killer Cell Receptors and MHC. Front Immunol 2019; 10:177. [PMID: 30837985 PMCID: PMC6389700 DOI: 10.3389/fimmu.2019.00177] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Accepted: 01/21/2019] [Indexed: 12/16/2022] Open
Abstract
Natural killer (NK) cells have diverse roles in hominid immunity and reproduction. Modulating these functions are the interactions between major histocompatibility complex (MHC) class I molecules that are ligands for two NK cell surface receptor types. Diverse killer cell immunoglobulin-like receptors (KIR) bind specific motifs encoded within the polymorphic MHC class I cell surface glycoproteins, while, in more conserved interactions, CD94:NKG2A receptors recognize MHC-E with bound peptides derived from MHC class I leader sequences. The hominid lineage presents a choreographed co-evolution of KIR with their MHC class I ligands. MHC-A, -B, and -C are present in all great apes with species-specific haplotypic variation in gene content. The Bw4 epitope recognized by lineage II KIR is restricted to MHC-B but also present on some gorilla and human MHC-A. Common to great apes, but rare in humans, are MHC-B possessing a C1 epitope recognized by lineage III KIR. MHC-C arose from duplication of MHC-B and is fixed in all great apes except orangutan, where it exists on approximately 50% of haplotypes and all allotypes are C1-bearing. Recent study showed that gorillas possess yet another intermediate MHC organization compared to humans. Like orangutans, but unlike the Pan-Homo species, duplication of MHC-B occurred. However, MHC-C is fixed, and the MHC-C C2 epitope (absent in orangutans) emerges. The evolution of MHC-C drove expansion of its cognate lineage III KIR. Recently, position −21 of the MHC-B leader sequence has been shown to be critical in determining NK cell educational outcome. In humans, methionine (−21M) results in CD94:NKG2A-focused education whereas threonine (−21T) produces KIR-focused education. This is another dynamic position among hominids. Orangutans have exclusively −21M, consistent with their intermediate stage in lineage III KIR-focused evolution. Gorillas have both −21M and −21T, like humans, but they are unequally encoded by their duplicated B genes. Chimpanzees have near-fixed −21T, indicative of KIR-focused NK education. Harmonious with this observation, chimpanzee KIR exhibit strong binding and, compared to humans, smaller differences between binding levels of activating and inhibitory KIR. Consistent between these MHC-NK cell receptor systems over the course of hominid evolution is the evolution of polymorphism favoring the more novel and dynamic KIR system.
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Affiliation(s)
- Emily E Wroblewski
- Department of Anthropology, Washington University, St. Louis, MO, United States
| | - Peter Parham
- Departments of Structural Biology and Microbiology & Immunology, Stanford University School of Medicine, Stanford, CA, United States
| | - Lisbeth A Guethlein
- Departments of Structural Biology and Microbiology & Immunology, Stanford University School of Medicine, Stanford, CA, United States
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15
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Fisken FA, Carlsen F, Elder M, de Jongh T, Pereboom JJM, Pohl B, Rietkerk F, Ross SR, Taniguchi A. Global population records and managed-programme updates for the great apes: short report. ACTA ACUST UNITED AC 2018. [DOI: 10.1111/izy.12206] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- F. A. Fisken
- Zoological Society of London; Regent's Park London NW1 4RY United Kingdom
| | - F. Carlsen
- Copenhagen Zoo; Roskildevej 38 DK-2000 Frederiksberg Denmark
| | - M. Elder
- Como Park Zoo & Conservatory; 1225 Estabrook Drive Saint Paul Minnesota 55103 USA
| | - T. de Jongh
- Burgers' Zoo; Antoon van Hooffplein 1 6816 SH Arnhem The Netherlands
| | - J. J. M. Pereboom
- Royal Zoological Society of Antwerp; Koningin Astridplein 26 2018 Antwerp Belgium
| | - B. Pohl
- Monarto Safari Park; Princes Highway Monarto SA 5254 Australia
| | - F. Rietkerk
- Stichting Apenheul; J.C; Wilslaan 21 7313 HK Apeldoorn The Netherlands
| | - S. R. Ross
- Lester E. Fisher Center for the Study and Conservation of Apes; Lincoln Park Zoo Chicago IL 60614 USA
| | - A. Taniguchi
- Tama Zoological Park; 7-1-1 Hodokubo, Hino-shi Tokyo 191-0042 Japan
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16
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Lowenstine LJ, McManamon R, Terio KA. Apes. PATHOLOGY OF WILDLIFE AND ZOO ANIMALS 2018. [PMCID: PMC7173580 DOI: 10.1016/b978-0-12-805306-5.00015-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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17
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Costa MC, Oliveira PRR, Davanço PV, de Camargo C, Laganaro NM, Azeredo RA, Simpson J, Silveira LF, Francisco MR. Recovering the Genetic Identity of an Extinct-in-the-Wild Species: The Puzzling Case of the Alagoas Curassow. PLoS One 2017; 12:e0169636. [PMID: 28056082 PMCID: PMC5215914 DOI: 10.1371/journal.pone.0169636] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2016] [Accepted: 12/16/2016] [Indexed: 01/18/2023] Open
Abstract
The conservation of many endangered taxa relies on hybrid identification, and when hybrids become morphologically indistinguishable from the parental species, the use of molecular markers can assign individual admixture levels. Here, we present the puzzling case of the extinct in the wild Alagoas Curassow (Pauxi mitu), whose captive population descends from only three individuals. Hybridization with the Razor-billed Curassow (P. tuberosa) began more than eight generations ago, and admixture uncertainty affects the whole population. We applied an analysis framework that combined morphological diagnostic traits, Bayesian clustering analyses using 14 microsatellite loci, and mtDNA haplotypes to assess the ancestry of all individuals that were alive from 2008 to 2012. Simulated data revealed that our microsatellites could accurately assign an individual a hybrid origin until the second backcross generation, which permitted us to identify a pure group among the older, but still reproductive animals. No wild species has ever survived such a severe bottleneck, followed by hybridization, and studying the recovery capability of the selected pure Alagoas Curassow group might provide valuable insights into biological conservation theory.
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Affiliation(s)
- Mariellen C. Costa
- Programa de Pós Graduação em Ecologia e Recursos Naturais, Universidade Federal de São Carlos, Rod. Washington Luís, CEP, São Carlos, SP, Brazil
| | - Paulo R. R. Oliveira
- Programa de Pós Graduação em Diversidade Biológica e Conservação, Universidade Federal de São Carlos, campus de Sorocaba, Rod. João Leme dos Santos, CEP, Sorocaba, SP, Brazil
| | - Paulo V. Davanço
- Programa de Pós Graduação em Diversidade Biológica e Conservação, Universidade Federal de São Carlos, campus de Sorocaba, Rod. João Leme dos Santos, CEP, Sorocaba, SP, Brazil
| | - Crisley de Camargo
- Departamento de Ciências Ambientais, Universidade Federal de São Carlos, Campus de Sorocaba, Rod. João Leme dos Santos, CEP, Sorocaba, SP, Brazil
| | - Natasha M. Laganaro
- Programa de Pós Graduação em Diversidade Biológica e Conservação, Universidade Federal de São Carlos, campus de Sorocaba, Rod. João Leme dos Santos, CEP, Sorocaba, SP, Brazil
| | - Roberto A. Azeredo
- CRAX—Sociedade de Pesquisa do Manejo e da Reprodução da Fauna Silvestre, rua Jarbas Camargo, Chácara Campestre, Contagem, MG, Brazil
| | - James Simpson
- CRAX—Sociedade de Pesquisa do Manejo e da Reprodução da Fauna Silvestre, rua Jarbas Camargo, Chácara Campestre, Contagem, MG, Brazil
| | - Luis F. Silveira
- Seção de Aves, Museu de Zoologia da Universidade de São Paulo, CEP, São Paulo, SP, Brazil
| | - Mercival R. Francisco
- Departamento de Ciências Ambientais, Universidade Federal de São Carlos, Campus de Sorocaba, Rod. João Leme dos Santos, CEP, Sorocaba, SP, Brazil
- * E-mail:
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18
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Estrada A, Garber PA, Rylands AB, Roos C, Fernandez-Duque E, Di Fiore A, Nekaris KAI, Nijman V, Heymann EW, Lambert JE, Rovero F, Barelli C, Setchell JM, Gillespie TR, Mittermeier RA, Arregoitia LV, de Guinea M, Gouveia S, Dobrovolski R, Shanee S, Shanee N, Boyle SA, Fuentes A, MacKinnon KC, Amato KR, Meyer ALS, Wich S, Sussman RW, Pan R, Kone I, Li B. Impending extinction crisis of the world's primates: Why primates matter. SCIENCE ADVANCES 2017; 3:e1600946. [PMID: 28116351 PMCID: PMC5242557 DOI: 10.1126/sciadv.1600946] [Citation(s) in RCA: 595] [Impact Index Per Article: 85.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2016] [Accepted: 11/22/2016] [Indexed: 05/05/2023]
Abstract
Nonhuman primates, our closest biological relatives, play important roles in the livelihoods, cultures, and religions of many societies and offer unique insights into human evolution, biology, behavior, and the threat of emerging diseases. They are an essential component of tropical biodiversity, contributing to forest regeneration and ecosystem health. Current information shows the existence of 504 species in 79 genera distributed in the Neotropics, mainland Africa, Madagascar, and Asia. Alarmingly, ~60% of primate species are now threatened with extinction and ~75% have declining populations. This situation is the result of escalating anthropogenic pressures on primates and their habitats-mainly global and local market demands, leading to extensive habitat loss through the expansion of industrial agriculture, large-scale cattle ranching, logging, oil and gas drilling, mining, dam building, and the construction of new road networks in primate range regions. Other important drivers are increased bushmeat hunting and the illegal trade of primates as pets and primate body parts, along with emerging threats, such as climate change and anthroponotic diseases. Often, these pressures act in synergy, exacerbating primate population declines. Given that primate range regions overlap extensively with a large, and rapidly growing, human population characterized by high levels of poverty, global attention is needed immediately to reverse the looming risk of primate extinctions and to attend to local human needs in sustainable ways. Raising global scientific and public awareness of the plight of the world's primates and the costs of their loss to ecosystem health and human society is imperative.
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Affiliation(s)
- Alejandro Estrada
- Institute of Biology, National Autonomous University of Mexico, CP 04510, Mexico City, Mexico
| | - Paul A. Garber
- Department of Anthropology, Program in Ecology, Evolution, and Conservation Biology, University of Illinois, Urbana, IL 61801, USA
| | - Anthony B. Rylands
- Conservation International, 2011 Crystal Drive, Suite 500, Arlington, VA 22202, USA
| | - Christian Roos
- Gene Bank of Primates and Primate Genetics Laboratory, German Primate Center, Leibniz Institute for Primate Research, Kellnerweg 4, 37077 Göttingen, Germany
| | | | - Anthony Di Fiore
- Department of Anthropology, University of Texas, Austin, TX 78705, USA
| | | | - Vincent Nijman
- Department of Social Sciences, Oxford Brookes University, Oxford OX3 0BP, U.K
| | - Eckhard W. Heymann
- Abteilung Verhaltensökologie und Soziobiologie, Deutsches Primatenzentrum, Leibniz-Institut für Primatenforschung, Kellnerweg 4, D-37077 Göttingen, Germany
| | - Joanna E. Lambert
- Department of Anthropology, University of Colorado at Boulder, 1350 Pleasant Street UCB 233, Boulder, CO 80309, USA
| | - Francesco Rovero
- Tropical Biodiversity Section, MUSE—Museo delle Scienze, Corso del Lavoro e della Scienza 3, 38122 Trento, Italy
| | - Claudia Barelli
- Tropical Biodiversity Section, MUSE—Museo delle Scienze, Corso del Lavoro e della Scienza 3, 38122 Trento, Italy
| | - Joanna M. Setchell
- Department of Anthropology, and Behaviour, Ecology and Evolution Research Centre, Durham University, South Road, Durham DH1 3LE, U.K
| | - Thomas R. Gillespie
- Departments of Environmental Sciences and Environmental Health, Rollins School of Public Health, Emory University, 400 Dowman Drive, Math and Science Center, Suite E510, Atlanta, GA 30322, USA
| | | | | | - Miguel de Guinea
- Department of Social Sciences, Oxford Brookes University, Oxford OX3 0BP, U.K
| | - Sidney Gouveia
- Department of Ecology, Federal University of Sergipe, São Cristóvão, SE 49100-000, Brazil
| | - Ricardo Dobrovolski
- Department of Zoology, Federal University of Bahia, Salvador, BA 40170-290, Brazil
| | - Sam Shanee
- Neotropical Primate Conservation, 23 Portland Road, Manchester M32 0PH, U.K
- Asociación Neotropical Primate Conservation Perú, 1187 Avenida Belaunde, La Esperanza, Yambrasbamba, Bongará, Amazonas, Peru
| | - Noga Shanee
- Neotropical Primate Conservation, 23 Portland Road, Manchester M32 0PH, U.K
- Asociación Neotropical Primate Conservation Perú, 1187 Avenida Belaunde, La Esperanza, Yambrasbamba, Bongará, Amazonas, Peru
| | - Sarah A. Boyle
- Department of Biology, Rhodes College, 2000 North Parkway, Memphis, TN 38112, USA
| | - Agustin Fuentes
- Department of Anthropology, University of Notre Dame, Notre Dame, IN 46556, USA
| | - Katherine C. MacKinnon
- Department of Sociology and Anthropology, Saint Louis University, St. Louis, MO 63108, USA
| | - Katherine R. Amato
- Department of Anthropology, Northwestern University, 1810 Hinman Avenue, Evanston, IL 60208, USA
| | - Andreas L. S. Meyer
- Programa de Pós-Graduação em Zoologia, Departamento de Zoologia, Universidade Federal do Paraná, C.P. 19020, Curitiba, PR 81531-990, Brazil
| | - Serge Wich
- School of Natural Sciences and Psychology, Liverpool John Moores University, James Parsons Building, Byrom Street, Liverpool L3 3AF, U.K
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, Netherlands
| | - Robert W. Sussman
- Department of Anthropology, Washington University, St. Louis, MO 63130, USA
| | - Ruliang Pan
- School of Anatomy, Physiology and Human Biology, University of Western Australia (M309), 35 Stirling Highway, Crawley, Western Australia 6009, Australia
| | - Inza Kone
- Centre Suisse des Recherches Scientifiques, Université de Cocody, Abidjan, Côte d’Ivoire
| | - Baoguo Li
- Xi’an Branch of Chinese Academy of Sciences, College of Life Sciences, Northwest University, No. 229, Taibai North Road, Xi’an 710069, China
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19
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Staes N, Koski SE, Helsen P, Fransen E, Eens M, Stevens JMG. Chimpanzee sociability is associated with vasopressin (Avpr1a) but not oxytocin receptor gene (OXTR) variation. Horm Behav 2015; 75:84-90. [PMID: 26299644 DOI: 10.1016/j.yhbeh.2015.08.006] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/06/2015] [Revised: 06/16/2015] [Accepted: 08/14/2015] [Indexed: 11/25/2022]
Abstract
The importance of genes in regulating phenotypic variation of personality traits in humans and animals is becoming increasingly apparent in recent studies. Here we focus on variation in the vasopressin receptor gene 1a (Avpr1a) and oxytocin receptor gene (OXTR) and their effects on social personality traits in chimpanzees. We combine newly available genetic data on Avpr1a and OXTR allelic variation of 62 captive chimpanzees with individual variation in personality, based on behavioral assessments. Our study provides support for the positive association of the Avpr1a promoter region, in particular the presence of DupB, and sociability in chimpanzees. This complements findings of previous studies on adolescent chimpanzees and studies that assessed personality using questionnaire data. In contrast, no significant associations were found for the single nucleotide polymorphism (SNP) ss1388116472 of the OXTR and any of the personality components. Most importantly, our study provides additional evidence for the regulatory function of the 5' promoter region of Avpr1a on social behavior and its evolutionary stable effect across species, including rodents, chimpanzees and humans. Although it is generally accepted that complex social behavior is regulated by a combination of genes, the environment and their interaction, our findings highlight the importance of candidate genes with large effects on behavioral variation.
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Affiliation(s)
- Nicky Staes
- University of Antwerp, Department of Biology, B-2610 Antwerp, Belgium; Centre for Research and Conservation, Royal Zoological Society of Antwerp, B-2018 Antwerp, Belgium.
| | - Sonja E Koski
- Helsinki University, Finnish Centre of Excellence in Intersubjectivity in Interaction, FI-00014 Helsinki, Finland.
| | - Philippe Helsen
- Centre for Research and Conservation, Royal Zoological Society of Antwerp, B-2018 Antwerp, Belgium; University of Antwerp, Department of Biology, B-2610 Antwerp, Belgium.
| | - Erik Fransen
- University of Antwerp, Statua Center for Statistics, B-2000 Antwerp, Belgium.
| | - Marcel Eens
- University of Antwerp, Department of Biology, B-2610 Antwerp, Belgium.
| | - Jeroen M G Stevens
- Centre for Research and Conservation, Royal Zoological Society of Antwerp, B-2018 Antwerp, Belgium; University of Antwerp, Department of Biology, B-2610 Antwerp, Belgium.
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20
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Wroblewski EE, Norman PJ, Guethlein LA, Rudicell RS, Ramirez MA, Li Y, Hahn BH, Pusey AE, Parham P. Signature Patterns of MHC Diversity in Three Gombe Communities of Wild Chimpanzees Reflect Fitness in Reproduction and Immune Defense against SIVcpz. PLoS Biol 2015; 13:e1002144. [PMID: 26020813 PMCID: PMC4447270 DOI: 10.1371/journal.pbio.1002144] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2014] [Accepted: 04/02/2015] [Indexed: 11/19/2022] Open
Abstract
Major histocompatibility complex (MHC) class I molecules determine immune responses to viral infections. These polymorphic cell-surface glycoproteins bind peptide antigens, forming ligands for cytotoxic T and natural killer cell receptors. Under pressure from rapidly evolving viruses, hominoid MHC class I molecules also evolve rapidly, becoming diverse and species-specific. Little is known of the impact of infectious disease epidemics on MHC class I variant distributions in human populations, a context in which the chimpanzee is the superior animal model. Population dynamics of the chimpanzees inhabiting Gombe National Park, Tanzania have been studied for over 50 years. This population is infected with SIVcpz, the precursor of human HIV-1. Because HLA-B is the most polymorphic human MHC class I molecule and correlates strongly with HIV-1 progression, we determined sequences for its ortholog, Patr-B, in 125 Gombe chimpanzees. Eleven Patr-B variants were defined, as were their frequencies in Gombe's three communities, changes in frequency with time, and effect of SIVcpz infection. The growing populations of the northern and central communities, where SIVcpz is less prevalent, have stable distributions comprising a majority of low-frequency Patr-B variants and a few high-frequency variants. Driving the latter to high frequency has been the fecundity of immigrants to the northern community, whereas in the central community, it has been the fecundity of socially dominant individuals. In the declining population of the southern community, where greater SIVcpz prevalence is associated with mortality and emigration, Patr-B variant distributions have been changing. Enriched in this community are Patr-B variants that engage with natural killer cell receptors. Elevated among SIVcpz-infected chimpanzees, the Patr-B*06:03 variant has striking structural and functional similarities to HLA-B*57, the human allotype most strongly associated with delayed HIV-1 progression. Like HLA-B*57, Patr-B*06:03 correlates with reduced viral load, as assessed by detection of SIVcpz RNA in feces.
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Affiliation(s)
- Emily E. Wroblewski
- Department of Structural Biology and Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, United States of America
- * E-mail: (EEW); (PP)
| | - Paul J. Norman
- Department of Structural Biology and Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, United States of America
| | - Lisbeth A. Guethlein
- Department of Structural Biology and Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, United States of America
| | - Rebecca S. Rudicell
- Vaccine Research Center, National Institutes of Health, Bethesda, Maryland, United States of America
- Sanofi, Cambridge, Massachusetts, United States of America
| | - Miguel A. Ramirez
- Departments of Medicine and Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
| | - Yingying Li
- Departments of Medicine and Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
| | - Beatrice H. Hahn
- Departments of Medicine and Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
| | - Anne E. Pusey
- Department of Evolutionary Anthropology, Duke University, Durham, North Carolina, United States of America
| | - Peter Parham
- Department of Structural Biology and Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, United States of America
- * E-mail: (EEW); (PP)
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21
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Trading or coercion? Variation in male mating strategies between two communities of East African chimpanzees. Behav Ecol Sociobiol 2015; 69:1039-1052. [PMID: 26279605 DOI: 10.1007/s00265-015-1917-x] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
Across taxa, males employ a variety of mating strategies, including sexual coercion and the provision, or trading, of resources. Biological market theory (BMT) predicts that trading of commodities for mating opportunities should exist only when males cannot monopolize access to females and/or obtain mating by force, in situations where power differentials between males are low; both coercion and trading have been reported for chimpanzees (Pan troglodytes). Here, we investigate whether the choice of strategy depends on the variation in male power differentials, using data from two wild communities of East African chimpanzees (Pan troglodytes schweinfurthii): the structurally despotic Sonso community (Budongo, Uganda) and the structurally egalitarian M-group (Mahale, Tanzania). We found evidence of sexual coercion by male Sonso chimpanzees, and of trading-of grooming for mating-by M-group males; females traded sex for neither meat nor protection from male aggression. Our results suggest that the despotism-egalitarian axis influences strategy choice: male chimpanzees appear to pursue sexual coercion when power differentials are large and trading when power differentials are small and coercion consequently ineffective. Our findings demonstrate that trading and coercive strategies are not restricted to particular chimpanzee subspecies; instead, their occurrence is consistent with BMT predictions. Our study raises interesting, and as yet unanswered, questions regarding female chimpanzees' willingness to trade sex for grooming, if doing so represents a compromise to their fundamentally promiscuous mating strategy. It highlights the importance of within-species cross-group comparisons and the need for further study of the relationship between mating strategy and dominance steepness.
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22
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Bataillon T, Duan J, Hvilsom C, Jin X, Li Y, Skov L, Glemin S, Munch K, Jiang T, Qian Y, Hobolth A, Wang J, Mailund T, Siegismund HR, Schierup MH. Inference of purifying and positive selection in three subspecies of chimpanzees (Pan troglodytes) from exome sequencing. Genome Biol Evol 2015; 7:1122-32. [PMID: 25829516 PMCID: PMC4419804 DOI: 10.1093/gbe/evv058] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
We study genome-wide nucleotide diversity in three subspecies of extant chimpanzees using exome capture. After strict filtering, Single Nucleotide Polymorphisms and indels were called and genotyped for greater than 50% of exons at a mean coverage of 35× per individual. Central chimpanzees (Pan troglodytes troglodytes) are the most polymorphic (nucleotide diversity, θw = 0.0023 per site) followed by Eastern (P. t. schweinfurthii) chimpanzees (θw = 0.0016) and Western (P. t. verus) chimpanzees (θw = 0.0008). A demographic scenario of divergence without gene flow fits the patterns of autosomal synonymous nucleotide diversity well except for a signal of recent gene flow from Western into Eastern chimpanzees. The striking contrast in X-linked versus autosomal polymorphism and divergence previously reported in Central chimpanzees is also found in Eastern and Western chimpanzees. We show that the direction of selection statistic exhibits a strong nonmonotonic relationship with the strength of purifying selection S, making it inappropriate for estimating S. We instead use counts in synonymous versus nonsynonymous frequency classes to infer the distribution of S coefficients acting on nonsynonymous mutations in each subspecies. The strength of purifying selection we infer is congruent with the differences in effective sizes of each subspecies: Central chimpanzees are undergoing the strongest purifying selection followed by Eastern and Western chimpanzees. Coding indels show stronger selection against indels changing the reading frame than observed in human populations.
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Affiliation(s)
| | - Jinjie Duan
- Bioinformatics Research Centre, Aarhus University, Denmark
| | - Christina Hvilsom
- Science and Conservation, Copenhagen Zoo, Denmark Bioinformatics, University of Copenhagen, Denmark
| | | | | | - Laurits Skov
- Bioinformatics Research Centre, Aarhus University, Denmark
| | - Sylvain Glemin
- Institut des Sciences de l'Evolution, Universite Montpellier 2, France
| | - Kasper Munch
- Bioinformatics Research Centre, Aarhus University, Denmark
| | | | - Yu Qian
- Bioinformatics Research Centre, Aarhus University, Denmark
| | - Asger Hobolth
- Bioinformatics Research Centre, Aarhus University, Denmark
| | - Jun Wang
- BGI Shenzhen, China Section of Metabolic Genetics, The Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark The Department of Genetic Medicine, Faculty of Medicine and Princess Al Jawhara Albrahim Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah, Saudi Arabia Department of Biology, University of Copenhagen, Denmark Macau University of Science and Technology, China
| | - Thomas Mailund
- Bioinformatics Research Centre, Aarhus University, Denmark
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23
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Schmidt F, Franke FA, Shirley MH, Vliet KA, Villanova VL. The importance of genetic research in zoo breeding programmes for threatened species: the African dwarf crocodiles (genusOsteolaemus) as a case study. ACTA ACUST UNITED AC 2014. [DOI: 10.1111/izy.12082] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- F. Schmidt
- Zoo Leipzig; Pfaffendorfer Strasse 29 D-04105 Leipzig Germany
| | - F. A. Franke
- Animal Evolution & Development; Institute of Biology; University Leipzig; Talstrasse 33 D-04103 Leipzig Germany
- Molecular Evolution and Animal Systematics; Institute of Biology; University Leipzig; Talstrasse 33 D-04103 Leipzig Germany
| | | | - K. A. Vliet
- Department of Biology; University of Florida; 876 Newell Drive Gainesville Florida 32611 USA
| | - V. L. Villanova
- Department of Biology; University of Central Florida; 4000 Central Florida Boulevard Orlando Florida 32816 USA
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24
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Fünfstück T, Arandjelovic M, Morgan DB, Sanz C, Reed P, Olson SH, Cameron K, Ondzie A, Peeters M, Vigilant L. The sampling scheme matters: Pan troglodytes troglodytes and P. t. schweinfurthii are characterized by clinal genetic variation rather than a strong subspecies break. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2014; 156:181-91. [PMID: 25330245 DOI: 10.1002/ajpa.22638] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2014] [Revised: 08/15/2014] [Accepted: 10/06/2014] [Indexed: 11/10/2022]
Abstract
Populations of an organism living in marked geographical or evolutionary isolation from other populations of the same species are often termed subspecies and expected to show some degree of genetic distinctiveness. The common chimpanzee (Pan troglodytes) is currently described as four geographically delimited subspecies: the western (P. t. verus), the nigerian-cameroonian (P. t. ellioti), the central (P. t. troglodytes) and the eastern (P. t. schweinfurthii) chimpanzees. Although these taxa would be expected to be reciprocally monophyletic, studies have not always consistently resolved the central and eastern chimpanzee taxa. Most studies, however, used data from individuals of unknown or approximate geographic provenance. Thus, genetic data from samples of known origin may shed light on the evolutionary relationship of these subspecies. We generated microsatellite genotypes from noninvasively collected fecal samples of 185 central chimpanzees that were sampled across large parts of their range and analyzed them together with 283 published eastern chimpanzee genotypes from known localities. We observed a clear signal of isolation by distance across both subspecies. Further, we found that a large proportion of comparisons between groups taken from the same subspecies showed higher genetic differentiation than the least differentiated between-subspecies comparison. This proportion decreased substantially when we simulated a more clumped sampling scheme by including fewer groups. Our results support the general concept that the distribution of the sampled individuals can dramatically affect the inference of genetic population structure. With regard to chimpanzees, our results emphasize the close relationship of equatorial chimpanzees from central and eastern equatorial Africa and the difficult nature of subspecies definitions.
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Affiliation(s)
- Tillmann Fünfstück
- Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103, Leipzig, Germany
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25
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Senn H, Banfield L, Wacher T, Newby J, Rabeil T, Kaden J, Kitchener AC, Abaigar T, Silva TL, Maunder M, Ogden R. Splitting or lumping? A conservation dilemma exemplified by the critically endangered dama gazelle (Nanger dama). PLoS One 2014; 9:e98693. [PMID: 24956104 PMCID: PMC4067283 DOI: 10.1371/journal.pone.0098693] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2014] [Accepted: 05/02/2014] [Indexed: 01/07/2023] Open
Abstract
Managers of threatened species often face the dilemma of whether to keep populations separate to conserve local adaptations and minimize the risk of outbreeding, or whether to manage populations jointly to reduce loss of genetic diversity and minimise inbreeding. In this study we examine genetic relatedness and diversity in three of the five last remaining wild populations of dama gazelle and a number of captive populations, using mtDNA control region and cytochrome b data. Despite the sampled populations belonging to the three putative subspecies, which are delineated according to phenotypes and geographical location, we find limited evidence for phylogeographical structure within the data and no genetic support for the putative subspecies. In the light of these data we discuss the relevance of inbreeding depression, outbreeding depression, adaptive variation, genetic drift, and phenotypic variation to the conservation of the dama gazelle and make some recommendations for its future conservation management. The genetic data suggest that the best conservation approach is to view the dama gazelle as a single species without subspecific divisions.
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Affiliation(s)
- Helen Senn
- WildGenes Laboratory, Royal Zoological Society of Scotland, Edinburgh, United Kingdom
| | - Lisa Banfield
- Conservation Department, Al Ain Zoo, Al Ain, Abu Dhabi, United Arab Emirates
| | - Tim Wacher
- Conservation Programmes, Zoologicial Society of London, Regents Park, London, United Kingdom
| | - John Newby
- Sahara Conservation Fund, L'Isle, Switzerland
| | | | - Jennifer Kaden
- WildGenes Laboratory, Royal Zoological Society of Scotland, Edinburgh, United Kingdom
| | - Andrew C. Kitchener
- Department of Natural Sciences, National Museums Scotland, Chambers Street, Edinburgh, United Kingdom
- Institute of Geography, School of Geosciences, University of Edinburgh, Drummond Street, Edinburgh, United Kingdom
| | - Teresa Abaigar
- Estación Experimental de Zonas Áridas, Consejo Superior de Investigaciones Científicas (CSIC), Almería, Spain
| | - Teresa Luísa Silva
- CIBIO/InBIO, Centro de Investigção em Biodiversidade e Recursos Genéticos da Universidade do Porto, Vairão, Portugal
- Estación Experimental de Zonas Áridas, Consejo Superior de Investigaciones Científicas (CSIC), Almería, Spain
- Departamento de Biologia da, Faculdade de Ciências da Universidade do Porto, Porto, Portugal
| | - Mike Maunder
- College of Arts and Sciences, Florida International University, Miami, Florida, United States of America
| | - Rob Ogden
- WildGenes Laboratory, Royal Zoological Society of Scotland, Edinburgh, United Kingdom
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Hvilsom C, Carlsen F, Heller R, Jaffré N, Siegismund HR. Contrasting demographic histories of the neighboring bonobo and chimpanzee. Primates 2013; 55:101-12. [DOI: 10.1007/s10329-013-0373-3] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2013] [Accepted: 07/10/2013] [Indexed: 12/01/2022]
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