1
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Li L, Li S, Wang W, Zhang J, Sun Y, Deng Q, Zheng T, Lu J, Gao W, Yang M, Wang H, Pan Y, Liu X, Yang Y, Li J, Huo N. Adaptative machine vision with microsecond-level accurate perception beyond human retina. Nat Commun 2024; 15:6261. [PMID: 39048552 PMCID: PMC11269608 DOI: 10.1038/s41467-024-50488-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Accepted: 07/12/2024] [Indexed: 07/27/2024] Open
Abstract
Visual adaptive devices have potential to simplify circuits and algorithms in machine vision systems to adapt and perceive images with varying brightness levels, which is however limited by sluggish adaptation process. Here, the avalanche tuning as feedforward inhibition in bionic two-dimensional (2D) transistor is proposed for fast and high-frequency visual adaptation behavior with microsecond-level accurate perception, the adaptation speed is over 104 times faster than that of human retina and reported bionic sensors. As light intensity changes, the bionic transistor spontaneously switches between avalanche and photoconductive effect, varying responsivity in both magnitude and sign (from 7.6 × 104 to -1 × 103 A/W), thereby achieving ultra-fast scotopic and photopic adaptation process of 108 and 268 μs, respectively. By further combining convolutional neural networks with avalanche-tuned bionic transistor, an adaptative machine vision is achieved with remarkable microsecond-level rapid adaptation capabilities and robust image recognition with over 98% precision in both dim and bright conditions.
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Affiliation(s)
- Ling Li
- School of Semiconductor Science and Technology, South China Normal University, Foshan, 528225, P.R. China
| | - Shasha Li
- School of Electronic Engineering, Chaohu University, Hefei, 238000, China
| | - Wenhai Wang
- School of Semiconductor Science and Technology, South China Normal University, Foshan, 528225, P.R. China
| | - Jielian Zhang
- School of Semiconductor Science and Technology, South China Normal University, Foshan, 528225, P.R. China
| | - Yiming Sun
- School of Semiconductor Science and Technology, South China Normal University, Foshan, 528225, P.R. China
| | - Qunrui Deng
- School of Semiconductor Science and Technology, South China Normal University, Foshan, 528225, P.R. China
| | - Tao Zheng
- School of Semiconductor Science and Technology, South China Normal University, Foshan, 528225, P.R. China
| | - Jianting Lu
- National Key Laboratory of Science and Technology on Reliability Physics and Application of Electronic Component, China Electronic Product Reliability and Environmental Testing Research Institute, Guangzhou, 510610, China
| | - Wei Gao
- School of Semiconductor Science and Technology, South China Normal University, Foshan, 528225, P.R. China
| | - Mengmeng Yang
- School of Semiconductor Science and Technology, South China Normal University, Foshan, 528225, P.R. China
| | - Hanyu Wang
- School of Semiconductor Science and Technology, South China Normal University, Foshan, 528225, P.R. China
| | - Yuan Pan
- School of Semiconductor Science and Technology, South China Normal University, Foshan, 528225, P.R. China
| | - Xueting Liu
- School of Semiconductor Science and Technology, South China Normal University, Foshan, 528225, P.R. China
| | - Yani Yang
- School of Semiconductor Science and Technology, South China Normal University, Foshan, 528225, P.R. China
| | - Jingbo Li
- College of Optical Science and Engineering, Zhejiang University, Hangzhou, 310027, China
- Guangdong Provincial Key Laboratory of Chip and Integration Technology, Guangzhou, 510631, P.R. China
| | - Nengjie Huo
- School of Semiconductor Science and Technology, South China Normal University, Foshan, 528225, P.R. China.
- Guangdong Provincial Key Laboratory of Chip and Integration Technology, Guangzhou, 510631, P.R. China.
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2
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Brake N, Duc F, Rokos A, Arseneau F, Shahiri S, Khadra A, Plourde G. A neurophysiological basis for aperiodic EEG and the background spectral trend. Nat Commun 2024; 15:1514. [PMID: 38374047 PMCID: PMC10876973 DOI: 10.1038/s41467-024-45922-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Accepted: 02/06/2024] [Indexed: 02/21/2024] Open
Abstract
Electroencephalograms (EEGs) display a mixture of rhythmic and broadband fluctuations, the latter manifesting as an apparent 1/f spectral trend. While network oscillations are known to generate rhythmic EEG, the neural basis of broadband EEG remains unexplained. Here, we use biophysical modelling to show that aperiodic neural activity can generate detectable scalp potentials and shape broadband EEG features, but that these aperiodic signals do not significantly perturb brain rhythm quantification. Further model analysis demonstrated that rhythmic EEG signals are profoundly corrupted by shifts in synapse properties. To examine this scenario, we recorded EEGs of human subjects being administered propofol, a general anesthetic and GABA receptor agonist. Drug administration caused broadband EEG changes that quantitatively matched propofol's known effects on GABA receptors. We used our model to correct for these confounding broadband changes, which revealed that delta power, uniquely, increased within seconds of individuals losing consciousness. Altogether, this work details how EEG signals are shaped by neurophysiological factors other than brain rhythms and elucidates how these signals can undermine traditional EEG interpretation.
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Affiliation(s)
- Niklas Brake
- Quantiative Life Sciences PhD Program, McGill University, Montreal, Canada
- Department of Physiology, McGill University, Montreal, Canada
| | - Flavie Duc
- Department of Anesthesia, McGill University, Montreal, Canada
| | - Alexander Rokos
- Department of Anesthesia, McGill University, Montreal, Canada
| | | | - Shiva Shahiri
- School of Nursing, McGill University, Montreal, Canada
| | - Anmar Khadra
- Department of Physiology, McGill University, Montreal, Canada.
| | - Gilles Plourde
- Department of Anesthesia, McGill University, Montreal, Canada.
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3
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Ding X, Li Q, Tang YY. The thalamic clustering coefficient moderates the vigor-sleep quality relationship. Sleep Biol Rhythms 2023; 21:369-375. [PMID: 38476314 PMCID: PMC10899908 DOI: 10.1007/s41105-023-00456-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Accepted: 03/06/2023] [Indexed: 03/28/2023]
Abstract
Sleep disorders affect more than one-quarter of the world's population, resulting in reduced daytime productivity, impaired immune function, and an increased risk of cardiovascular disease. It is important to identify the physiological and psychological factors related to sleep for the prevention and treatment of sleep disorders. In this study, we correlated measurements of emotional state, sleep quality, and some brain neural activity parameters to better understand the brain and psychological factors related to sleep. Resting-state functional magnetic resonance imaging (rs-fMRI) of 116 healthy undergraduates were analyzed using graph theory to assess regional topological characteristics. Among these, the left thalamic cluster coefficient proved to be the ablest to reflect the characteristics of the sleep neural graph index. The Profile of Mood States (POMS) was used to measure vigor, and the Pittsburgh Sleep Quality Index (PSQI) to assess sleep quality. The results showed that the left thalamic clustering coefficient was negatively correlated with sleep quality and vigor. Further, the left thalamic clustering coefficient moderated the relationship between vigor and sleep quality. When the left thalamic clustering coefficient was very low, there was a significant positive correlation between vigor and sleep quality. However, when the left thalamic clustering coefficient was high, the correlation between vigor and sleep quality became insignificant. The relationship between vigor and sleep quality is heterogeneous. Analyzing the function of the left thalamic neural network could help understand the variation in the relationship between vigor and sleep quality in different populations. Such observations may help in the development of personalized interventions for sleep disorders.
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Affiliation(s)
- Xiaoqian Ding
- College of Psychology, Liaoning Normal University, Dalian, 116029 China
| | - Qingmin Li
- College of Psychology, Liaoning Normal University, Dalian, 116029 China
| | - Yi-Yuan Tang
- College of Health Solutions, Arizona State University, Tempe, AZ 85281 USA
- College of Health Solutions, Arizona State University, Phoenix, AZ 85004 USA
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4
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Reyes-Sanchez M, Amaducci R, Sanchez-Martin P, Elices I, Rodriguez FB, Varona P. Automatized offline and online exploration to achieve a target dynamics in biohybrid neural circuits built with living and model neurons. Neural Netw 2023; 164:464-475. [PMID: 37196436 DOI: 10.1016/j.neunet.2023.04.034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2021] [Revised: 03/01/2023] [Accepted: 04/18/2023] [Indexed: 05/19/2023]
Abstract
Biohybrid circuits of interacting living and model neurons are an advantageous means to study neural dynamics and to assess the role of specific neuron and network properties in the nervous system. Hybrid networks are also a necessary step to build effective artificial intelligence and brain hybridization. In this work, we deal with the automatized online and offline adaptation, exploration and parameter mapping to achieve a target dynamics in hybrid circuits and, in particular, those that yield dynamical invariants between living and model neurons. We address dynamical invariants that form robust cycle-by-cycle relationships between the intervals that build neural sequences from such interaction. Our methodology first attains automated adaptation of model neurons to work in the same amplitude regime and time scale of living neurons. Then, we address the automatized exploration and mapping of the synapse parameter space that lead to a specific dynamical invariant target. Our approach uses multiple configurations and parallel computing from electrophysiological recordings of living neurons to build full mappings, and genetic algorithms to achieve an instance of the target dynamics for the hybrid circuit in a short time. We illustrate and validate such strategy in the context of the study of functional sequences in neural rhythms, which can be easily generalized for any variety of hybrid circuit configuration. This approach facilitates both the building of hybrid circuits and the accomplishment of their scientific goal.
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Affiliation(s)
- Manuel Reyes-Sanchez
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049 Madrid, Spain.
| | - Rodrigo Amaducci
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Pablo Sanchez-Martin
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Irene Elices
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049 Madrid, Spain; Sorbonne Université, INSERM, CNRS, Institut de la Vision, 17 rue Moreau, F-75012 Paris, France
| | - Francisco B Rodriguez
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Pablo Varona
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049 Madrid, Spain.
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5
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A Thalamic Reticular Circuit for Head Direction Cell Tuning and Spatial Navigation. Cell Rep 2021; 31:107747. [PMID: 32521272 DOI: 10.1016/j.celrep.2020.107747] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2019] [Revised: 02/13/2020] [Accepted: 05/18/2020] [Indexed: 01/13/2023] Open
Abstract
As we navigate in space, external landmarks and internal information guide our movement. Circuit and synaptic mechanisms that integrate these cues with head-direction (HD) signals remain, however, unclear. We identify an excitatory synaptic projection from the presubiculum (PreS) and the multisensory-associative retrosplenial cortex (RSC) to the anterodorsal thalamic reticular nucleus (TRN), so far classically implied in gating sensory information flow. In vitro, projections to TRN involve AMPA/NMDA-type glutamate receptors that initiate TRN cell burst discharge and feedforward inhibition of anterior thalamic nuclei. In vivo, chemogenetic anterodorsal TRN inhibition modulates PreS/RSC-induced anterior thalamic firing dynamics, broadens the tuning of thalamic HD cells, and leads to preferential use of allo- over egocentric search strategies in the Morris water maze. TRN-dependent thalamic inhibition is thus an integral part of limbic navigational circuits wherein it coordinates external sensory and internal HD signals to regulate the choice of search strategies during spatial navigation.
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6
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George R, Chiappalone M, Giugliano M, Levi T, Vassanelli S, Partzsch J, Mayr C. Plasticity and Adaptation in Neuromorphic Biohybrid Systems. iScience 2020; 23:101589. [PMID: 33083749 PMCID: PMC7554028 DOI: 10.1016/j.isci.2020.101589] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
Neuromorphic systems take inspiration from the principles of biological information processing to form hardware platforms that enable the large-scale implementation of neural networks. The recent years have seen both advances in the theoretical aspects of spiking neural networks for their use in classification and control tasks and a progress in electrophysiological methods that is pushing the frontiers of intelligent neural interfacing and signal processing technologies. At the forefront of these new technologies, artificial and biological neural networks are tightly coupled, offering a novel "biohybrid" experimental framework for engineers and neurophysiologists. Indeed, biohybrid systems can constitute a new class of neuroprostheses opening important perspectives in the treatment of neurological disorders. Moreover, the use of biologically plausible learning rules allows forming an overall fault-tolerant system of co-developing subsystems. To identify opportunities and challenges in neuromorphic biohybrid systems, we discuss the field from the perspectives of neurobiology, computational neuroscience, and neuromorphic engineering.
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Affiliation(s)
- Richard George
- Department of Electrical Engineering and Information Technology, Technical University of Dresden, Dresden, Germany
| | | | - Michele Giugliano
- Neuroscience Area, International School of Advanced Studies, Trieste, Italy
| | - Timothée Levi
- Laboratoire de l’Intégration du Matéeriau au Systéme, University of Bordeaux, Bordeaux, France
- LIMMS/CNRS, Institute of Industrial Science, The University of Tokyo, Tokyo, Japan
| | - Stefano Vassanelli
- Department of Biomedical Sciences and Padova Neuroscience Center, University of Padova, Padova, Italy
| | - Johannes Partzsch
- Department of Electrical Engineering and Information Technology, Technical University of Dresden, Dresden, Germany
| | - Christian Mayr
- Department of Electrical Engineering and Information Technology, Technical University of Dresden, Dresden, Germany
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7
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Reyes-Sanchez M, Amaducci R, Elices I, Rodriguez FB, Varona P. Automatic Adaptation of Model Neurons and Connections to Build Hybrid Circuits with Living Networks. Neuroinformatics 2020; 18:377-393. [PMID: 31930463 DOI: 10.1007/s12021-019-09440-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
Hybrid circuits built by creating mono- or bi-directional interactions among living cells and model neurons and synapses are an effective way to study neuron, synaptic and neural network dynamics. However, hybrid circuit technology has been largely underused in the context of neuroscience studies mainly because of the inherent difficulty in implementing and tuning this type of interactions. In this paper, we present a set of algorithms for the automatic adaptation of model neurons and connections in the creation of hybrid circuits with living neural networks. The algorithms perform model time and amplitude scaling, real-time drift adaptation, goal-driven synaptic and model tuning/calibration and also automatic parameter mapping. These algorithms have been implemented in RTHybrid, an open-source library that works with hard real-time constraints. We provide validation examples by building hybrid circuits in a central pattern generator. The results of the validation experiments show that the proposed dynamic adaptation facilitates closed-loop communication among living and artificial model neurons and connections, and contributes to characterize system dynamics, achieve control, automate experimental protocols and extend the lifespan of the preparations.
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Affiliation(s)
- Manuel Reyes-Sanchez
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049, Madrid, Spain.
| | - Rodrigo Amaducci
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049, Madrid, Spain
| | - Irene Elices
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049, Madrid, Spain
| | - Francisco B Rodriguez
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049, Madrid, Spain
| | - Pablo Varona
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049, Madrid, Spain.
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8
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Abstract
Sleep spindles are burstlike signals in the electroencephalogram (EEG) of the sleeping mammalian brain and electrical surface correlates of neuronal oscillations in thalamus. As one of the most inheritable sleep EEG signatures, sleep spindles probably reflect the strength and malleability of thalamocortical circuits that underlie individual cognitive profiles. We review the characteristics, organization, regulation, and origins of sleep spindles and their implication in non-rapid-eye-movement sleep (NREMS) and its functions, focusing on human and rodent. Spatially, sleep spindle-related neuronal activity appears on scales ranging from small thalamic circuits to functional cortical areas, and generates a cortical state favoring intracortical plasticity while limiting cortical output. Temporally, sleep spindles are discrete events, part of a continuous power band, and elements grouped on an infraslow time scale over which NREMS alternates between continuity and fragility. We synthesize diverse and seemingly unlinked functions of sleep spindles for sleep architecture, sensory processing, synaptic plasticity, memory formation, and cognitive abilities into a unifying sleep spindle concept, according to which sleep spindles 1) generate neural conditions of large-scale functional connectivity and plasticity that outlast their appearance as discrete EEG events, 2) appear preferentially in thalamic circuits engaged in learning and attention-based experience during wakefulness, and 3) enable a selective reactivation and routing of wake-instated neuronal traces between brain areas such as hippocampus and cortex. Their fine spatiotemporal organization reflects NREMS as a physiological state coordinated over brain and body and may indicate, if not anticipate and ultimately differentiate, pathologies in sleep and neurodevelopmental, -degenerative, and -psychiatric conditions.
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Affiliation(s)
- Laura M J Fernandez
- Department of Fundamental Neurosciences, University of Lausanne, Lausanne, Switzerland
| | - Anita Lüthi
- Department of Fundamental Neurosciences, University of Lausanne, Lausanne, Switzerland
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9
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Park S, Sohn JW, Cho J, Huh Y. A Computational Modeling Reveals That Strength of Inhibitory Input, E/I Balance, and Distance of Excitatory Input Modulate Thalamocortical Bursting Properties. Exp Neurobiol 2019; 28:568-577. [PMID: 31698549 PMCID: PMC6844838 DOI: 10.5607/en.2019.28.5.568] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Revised: 10/26/2019] [Accepted: 10/27/2019] [Indexed: 11/19/2022] Open
Abstract
The thalamus is a brain structure known to modulate sensory information before relaying to the cortex. The unique ability of a thalamocortical (TC) neuron to switch between the high frequency burst firing and single spike tonic firing has been implicated to have a key role in sensory modulation including pain. Of the two firing modes, burst firing, especially maintaining certain burst firing properties, was suggested to be critical in controlling nociceptive behaviors. Therefore, understanding the factors that influence burst firing properties would offer important insight into understanding sensory modulation. Using computational modeling, we investigated how the balance of excitatory and inhibitory inputs into a TC neuron influence TC bursting properties. We found that intensity of inhibitory inputs and the timing of excitatory input delivery control the dynamics of bursting properties. Then, to reflect a more realistic model, excitatory inputs delivered at different dendritic locations—proximal, intermediate, or distal—of a TC neuron were also investigated. Interestingly, excitatory input delivered into a distal dendrite, despite the furthest distance, had the strongest influence in shaping burst firing properties, suggesting that not all inputs equally contribute to modulating TC bursting properties. Overall, the results provide computational insights in understanding the detailed mechanism of the factors influencing temporal pattern of thalamic bursts.
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Affiliation(s)
- Sanggeon Park
- Department of Medical Science, College of Medicine, Catholic Kwandong University, Gangneung 25601, Korea.,Translational Brain Research Center, Catholic Kwandong University International St. Mary's Hospital, Incheon 22711, Korea.,Department of Neuroscience, University of Science & Technology, Daejeon 34113, Korea.,Center for Neuroscience, Korea Institute of Science and Technology, Seoul 02792, Korea
| | - Jeong-Woo Sohn
- Department of Medical Science, College of Medicine, Catholic Kwandong University, Gangneung 25601, Korea.,Translational Brain Research Center, Catholic Kwandong University International St. Mary's Hospital, Incheon 22711, Korea
| | - Jeiwon Cho
- Department of Medical Science, College of Medicine, Catholic Kwandong University, Gangneung 25601, Korea.,Translational Brain Research Center, Catholic Kwandong University International St. Mary's Hospital, Incheon 22711, Korea
| | - Yeowool Huh
- Department of Medical Science, College of Medicine, Catholic Kwandong University, Gangneung 25601, Korea.,Translational Brain Research Center, Catholic Kwandong University International St. Mary's Hospital, Incheon 22711, Korea
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10
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Wang J, Cauwenberghs G, Broccard FD. Neuromorphic Dynamical Synapses With Reconfigurable Voltage-Gated Kinetics. IEEE Trans Biomed Eng 2019; 67:1831-1840. [PMID: 31647418 DOI: 10.1109/tbme.2019.2948809] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
OBJECTIVE Although biological synapses express a large variety of receptors in neuronal membranes, the current hardware implementation of neuromorphic synapses often rely on simple models ignoring the heterogeneity of synaptic transmission. Our objective is to emulate different types of synapses with distinct properties. METHODS Conductance-based chemical and electrical synapses were implemented between silicon neurons on a fully programmable and reconfigurable, biophysically realistic neuromorphic VLSI chip. Different synaptic properties were achieved by configuring on-chip digital parameters for the conductances, reversal potentials, and voltage dependence of the channel kinetics. The measured I-V characteristics of the artificial synapses were compared with biological data. RESULTS We reproduced the response properties of five different types of chemical synapses, including both excitatory ( AMPA, NMDA) and inhibitory ( GABAA, GABAC, glycine) ionotropic receptors. In addition, electrical synapses were implemented in a small network of four silicon neurons. CONCLUSION Our work extends the repertoire of synapse types between silicon neurons, providing greater flexibility for the design and implementation of biologically realistic neural networks on neuromorphic chips. SIGNIFICANCE A higher synaptic heterogeneity in neuromorphic chips is relevant for the hardware implementation of energy-efficient population codes as well as for dynamic clamp applications where neural models are implemented in neuromorphic VLSI hardware.
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11
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Keren H, Partzsch J, Marom S, Mayr CG. A Biohybrid Setup for Coupling Biological and Neuromorphic Neural Networks. Front Neurosci 2019; 13:432. [PMID: 31133779 PMCID: PMC6517490 DOI: 10.3389/fnins.2019.00432] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2018] [Accepted: 04/15/2019] [Indexed: 12/30/2022] Open
Abstract
Developing technologies for coupling neural activity and artificial neural components, is key for advancing neural interfaces and neuroprosthetics. We present a biohybrid experimental setting, where the activity of a biological neural network is coupled to a biomimetic hardware network. The implementation of the hardware network (denoted NeuroSoC) exhibits complex dynamics with a multiplicity of time-scales, emulating 2880 neurons and 12.7 M synapses, designed on a VLSI chip. This network is coupled to a neural network in vitro, where the activities of both the biological and the hardware networks can be recorded, processed, and integrated bidirectionally in real-time. This experimental setup enables an adjustable and well-monitored coupling, while providing access to key functional features of neural networks. We demonstrate the feasibility to functionally couple the two networks and to implement control circuits to modify the biohybrid activity. Overall, we provide an experimental model for neuromorphic-neural interfaces, hopefully to advance the capability to interface with neural activity, and with its irregularities in pathology.
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Affiliation(s)
- Hanna Keren
- Department of Physiology, Biophysics and Systems Biology, Ruth and Bruce Rappaport Faculty of Medicine, Technion - Israel Institute of Technology, Haifa, Israel
- Network Biology Research Laboratory, Faculty of Electrical Engineering, Technion - Israel Institute of Technology, Haifa, Israel
- Institute of Circuits and Systems, Faculty of Electrical and Computer Engineering, School of Engineering Sciences, Dresden University of Technology, Dresden, Germany
| | - Johannes Partzsch
- Institute of Circuits and Systems, Faculty of Electrical and Computer Engineering, School of Engineering Sciences, Dresden University of Technology, Dresden, Germany
| | - Shimon Marom
- Department of Physiology, Biophysics and Systems Biology, Ruth and Bruce Rappaport Faculty of Medicine, Technion - Israel Institute of Technology, Haifa, Israel
- Network Biology Research Laboratory, Faculty of Electrical Engineering, Technion - Israel Institute of Technology, Haifa, Israel
| | - Christian G Mayr
- Institute of Circuits and Systems, Faculty of Electrical and Computer Engineering, School of Engineering Sciences, Dresden University of Technology, Dresden, Germany
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12
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Khoyratee F, Grassia F, Saïghi S, Levi T. Optimized Real-Time Biomimetic Neural Network on FPGA for Bio-hybridization. Front Neurosci 2019; 13:377. [PMID: 31068781 PMCID: PMC6491680 DOI: 10.3389/fnins.2019.00377] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2018] [Accepted: 04/02/2019] [Indexed: 01/04/2023] Open
Abstract
Neurological diseases can be studied by performing bio-hybrid experiments using a real-time biomimetic Spiking Neural Network (SNN) platform. The Hodgkin-Huxley model offers a set of equations including biophysical parameters which can serve as a base to represent different classes of neurons and affected cells. Also, connecting the artificial neurons to the biological cells would allow us to understand the effect of the SNN stimulation using different parameters on nerve cells. Thus, designing a real-time SNN could useful for the study of simulations of some part of the brain. Here, we present a different approach to optimize the Hodgkin-Huxley equations adapted for Field Programmable Gate Array (FPGA) implementation. The equations of the conductance have been unified to allow the use of same functions with different parameters for all ionic channels. The low resources and high-speed implementation also include features, such as synaptic noise using the Ornstein-Uhlenbeck process and different synapse receptors including AMPA, GABAa, GABAb, and NMDA receptors. The platform allows real-time modification of the neuron parameters and can output different cortical neuron families like Fast Spiking (FS), Regular Spiking (RS), Intrinsically Bursting (IB), and Low Threshold Spiking (LTS) neurons using a Digital to Analog Converter (DAC). Gaussian distribution of the synaptic noise highlights similarities with the biological noise. Also, cross-correlation between the implementation and the model shows strong correlations, and bifurcation analysis reproduces similar behavior compared to the original Hodgkin-Huxley model. The implementation of one core of calculation uses 3% of resources of the FPGA and computes in real-time 500 neurons with 25,000 synapses and synaptic noise which can be scaled up to 15,000 using all resources. This is the first step toward neuromorphic system which can be used for the simulation of bio-hybridization and for the study of neurological disorders or the advanced research on neuroprosthesis to regain lost function.
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Affiliation(s)
- Farad Khoyratee
- Laboratoire de l'Intégration du Matériau au Système, Bordeaux INP, CNRS UMR 5218, University of Bordeaux, Talence, France
| | - Filippo Grassia
- LTI Laboratory, EA 3899, University of Picardie Jules Verne, Amiens, France
| | - Sylvain Saïghi
- Laboratoire de l'Intégration du Matériau au Système, Bordeaux INP, CNRS UMR 5218, University of Bordeaux, Talence, France
| | - Timothée Levi
- Laboratoire de l'Intégration du Matériau au Système, Bordeaux INP, CNRS UMR 5218, University of Bordeaux, Talence, France.,Institute of Industrial Science, The University of Tokyo, Tokyo, Japan
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13
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Amaducci R, Reyes-Sanchez M, Elices I, Rodriguez FB, Varona P. RTHybrid: A Standardized and Open-Source Real-Time Software Model Library for Experimental Neuroscience. Front Neuroinform 2019; 13:11. [PMID: 30914940 PMCID: PMC6423167 DOI: 10.3389/fninf.2019.00011] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2018] [Accepted: 02/14/2019] [Indexed: 12/05/2022] Open
Abstract
Closed-loop technologies provide novel ways of online observation, control and bidirectional interaction with the nervous system, which help to study complex non-linear and partially observable neural dynamics. These protocols are often difficult to implement due to the temporal precision required when interacting with biological components, which in many cases can only be achieved using real-time technology. In this paper we introduce RTHybrid (www.github.com/GNB-UAM/RTHybrid), a free and open-source software that includes a neuron and synapse model library to build hybrid circuits with living neurons in a wide variety of experimental contexts. In an effort to encourage the standardization of real-time software technology in neuroscience research, we compared different open-source real-time operating system patches, RTAI, Xenomai 3 and Preempt-RT, according to their performance and usability. RTHybrid has been developed to run over Linux operating systems supporting both Xenomai 3 and Preempt-RT real-time patches, and thus allowing an easy implementation in any laboratory. We report a set of validation tests and latency benchmarks for the construction of hybrid circuits using this library. With this work we want to promote the dissemination of standardized, user-friendly and open-source software tools developed for open- and closed-loop experimental neuroscience.
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Affiliation(s)
- Rodrigo Amaducci
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, Madrid, Spain
| | | | | | | | - Pablo Varona
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, Madrid, Spain
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14
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Closed-Loop Systems and In Vitro Neuronal Cultures: Overview and Applications. ADVANCES IN NEUROBIOLOGY 2019; 22:351-387. [DOI: 10.1007/978-3-030-11135-9_15] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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15
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Cabessa J, Villa AEP. Attractor dynamics of a Boolean model of a brain circuit controlled by multiple parameters. CHAOS (WOODBURY, N.Y.) 2018; 28:106318. [PMID: 30384642 DOI: 10.1063/1.5042312] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2018] [Accepted: 08/29/2018] [Indexed: 06/08/2023]
Abstract
Studies of Boolean recurrent neural networks are briefly introduced with an emphasis on the attractor dynamics determined by the sequence of distinct attractors observed in the limit cycles. We apply this framework to a simplified model of the basal ganglia-thalamocortical circuit where each brain area is represented by a "neuronal" node in a directed graph. Control parameters ranging from neuronal excitability that affects all cells to targeted local connections modified by a new adaptive plasticity rule, and the regulation of the interactive feedback affecting the external input stream of information, allow the network dynamics to switch between stable domains delimited by highly discontinuous boundaries and reach very high levels of complexity with specific configurations. The significance of this approach with regard to brain circuit studies is briefly discussed.
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Affiliation(s)
- Jérémie Cabessa
- Laboratory of Mathematical Economics (LEMMA), Université Paris 2-Panthéon-Assas, 75005 Paris, France
| | - Alessandro E P Villa
- Neuroheuristic Research Group, University of Lausanne, CH-1015 Lausanne, Switzerland
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16
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Biomimetic microfluidic neurons for bio-hybrid experiments. ARTIFICIAL LIFE AND ROBOTICS 2018. [DOI: 10.1007/s10015-018-0452-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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17
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Boraud T, Leblois A, Rougier NP. A natural history of skills. Prog Neurobiol 2018; 171:114-124. [PMID: 30171867 DOI: 10.1016/j.pneurobio.2018.08.003] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2018] [Revised: 07/19/2018] [Accepted: 08/21/2018] [Indexed: 10/28/2022]
Abstract
The dorsal pallium (a.k.a. cortex in mammals) makes a loop circuit with the basal ganglia and the thalamus known to control and adapt behavior but the who's who of the functional roles of these structures is still debated. Influenced by the Triune brain theory that was proposed in the early sixties, many current theories propose a hierarchical organization on the top of which stands the cortex to which the subcortical structures are subordinated. In particular, habits formation has been proposed to reflect a switch from conscious on-line control of behavior by the cortex, to a fully automated subcortical control. In this review, we propose to revalue the function of the network in light of the current experimental evidence concerning the anatomy and physiology of the basal ganglia-cortical circuits in vertebrates. We briefly review the current theories and show that they could be encompassed in a broader framework of skill learning and performance. Then, after reminding the state of the art concerning the anatomical architecture of the network and the underlying dynamic processes, we summarize the evolution of the anatomical and physiological substrate of skill learning and performance among vertebrates. We then review experimental evidence supporting for the hypothesis that the development of automatized skills relies on the BG teaching cortical circuits and is actually a late feature linked with the development of a specialized cortex or pallium that evolved in parallel in different taxa. We finally propose a minimal computational framework where this hypothesis can be explicitly implemented and tested.
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Affiliation(s)
- Thomas Boraud
- CNRS, UMR 5293, IMN, 33000 Bordeaux, France; University of Bordeaux, UMR 5293, IMN, 33000 Bordeaux, France; CNRS, French-Israeli Neuroscience Lab, 33000 Bordeaux, France; CHU de Bordeaux, IMN Clinique, 33000 Bordeaux, France.
| | - Arthur Leblois
- CNRS, UMR 5293, IMN, 33000 Bordeaux, France; University of Bordeaux, UMR 5293, IMN, 33000 Bordeaux, France; CNRS, French-Israeli Neuroscience Lab, 33000 Bordeaux, France
| | - Nicolas P Rougier
- University of Bordeaux, UMR 5293, IMN, 33000 Bordeaux, France; INRIA Bordeaux Sud-Ouest, 33405 Talence, France; LaBRI, University of Bordeaux, IPB, CNRS, UMR 5800, 33405 Talence, France
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18
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Huh Y, Jung D, Seo T, Sun S, Kim SH, Rhim H, Chung S, Kim CH, Kwon Y, Bikson M, Chung YA, Kim JJ, Cho J. Brain stimulation patterns emulating endogenous thalamocortical input to parvalbumin-expressing interneurons reduce nociception in mice. Brain Stimul 2018; 11:1151-1160. [PMID: 29784588 DOI: 10.1016/j.brs.2018.05.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2018] [Revised: 04/11/2018] [Accepted: 05/09/2018] [Indexed: 01/09/2023] Open
Abstract
BACKGROUND The bursting pattern of thalamocortical (TC) pathway dampens nociception. Whether brain stimulation mimicking endogenous patterns can engage similar sensory gating processes in the cortex and reduce nociceptive behaviors remains uninvestigated. OBJECTIVE We investigated the role of cortical parvalbumin expressing (PV) interneurons within the TC circuit in gating nociception and their selective response to TC burst patterns. We then tested if transcranial magnetic stimulation (TMS) patterned on endogenous nociceptive TC bursting modulate nociceptive behaviors. METHODS The switching of TC neurons between tonic (single spike) and burst (high frequency spikes) firing modes may be a critical component in modulating nociceptive signals. Deep brain electrical stimulation of TC neurons and immunohistochemistry were used to examine the differential influence of each firing mode on cortical PV interneuron activity. Optogenetic stimulation of cortical PV interneurons assessed a direct role in nociceptive modulation. A new TMS protocol mimicking thalamic burst firing patterns, contrasted with conventional continuous and intermittent theta burst protocols, tested if TMS patterned on endogenous TC activity reduces nociceptive behaviors in mice. RESULTS Immunohistochemical evidence confirmed that burst, but not tonic, deep brain stimulation of TC neurons increased the activity of PV interneurons in the cortex. Both optogenetic activation of PV interneurons and TMS protocol mimicking thalamic burst reduced nociceptive behaviors. CONCLUSIONS Our findings suggest that burst firing of TC neurons recruits PV interneurons in the cortex to reduce nociceptive behaviors and that neuromodulation mimicking thalamic burst firing may be useful for modulating nociception.
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Affiliation(s)
- Yeowool Huh
- Translational Brain Research Center, Catholic Kwandong University International St. Mary's Hospital, Incheon, South Korea; Dept. of Medical Science, College of Medicine, Catholic Kwandong University, Gangneung-si, Gangwon-do, South Korea
| | - Dahee Jung
- Translational Brain Research Center, Catholic Kwandong University International St. Mary's Hospital, Incheon, South Korea; Dept. of Medical Science, College of Medicine, Catholic Kwandong University, Gangneung-si, Gangwon-do, South Korea; Department of Neuroscience, University of Science and Technology, Daejeon, South Korea
| | - Taeyoon Seo
- Department of Electrical and Computer Engineering, Seoul National University, Seoul, South Korea
| | - Sukkyu Sun
- Department of Electrical and Computer Engineering, Seoul National University, Seoul, South Korea
| | - Su Hyun Kim
- Department of Neuroscience, University of Science and Technology, Daejeon, South Korea; Center for Neuroscience, Korea Institute of Science and Technology, Seoul, South Korea
| | - Hyewhon Rhim
- Center for Neuroscience, Korea Institute of Science and Technology, Seoul, South Korea
| | - Sooyoung Chung
- Department of Neuroscience, University of Science and Technology, Daejeon, South Korea; Center for Neuroscience, Korea Institute of Science and Technology, Seoul, South Korea
| | - Chong-Hyun Kim
- Department of Neuroscience, University of Science and Technology, Daejeon, South Korea; Center for Neuroscience, Korea Institute of Science and Technology, Seoul, South Korea
| | - Youngwoo Kwon
- Department of Electrical and Computer Engineering, Seoul National University, Seoul, South Korea
| | - Marom Bikson
- Department of Biomedical Engineering, The City College of the City University of New York, NY, USA
| | - Yong-An Chung
- Department of Radiology, Incheon St. Mary's Hospital, College of Medicine, The Catholic University of Korea, Seoul, South Korea
| | - Jeansok J Kim
- Department of Psychology, University of Washington, Seattle, WA, USA
| | - Jeiwon Cho
- Translational Brain Research Center, Catholic Kwandong University International St. Mary's Hospital, Incheon, South Korea; Dept. of Medical Science, College of Medicine, Catholic Kwandong University, Gangneung-si, Gangwon-do, South Korea.
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Pham T, Haas JS. Electrical synapses between inhibitory neurons shape the responses of principal neurons to transient inputs in the thalamus: a modeling study. Sci Rep 2018; 8:7763. [PMID: 29773817 PMCID: PMC5958104 DOI: 10.1038/s41598-018-25956-x] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2017] [Accepted: 05/02/2018] [Indexed: 11/09/2022] Open
Abstract
As multimodal sensory information proceeds to the cortex, it is intercepted and processed by the nuclei of the thalamus. The main source of inhibition within thalamus is the reticular nucleus (TRN), which collects signals both from thalamocortical relay neurons and from thalamocortical feedback. Within the reticular nucleus, neurons are densely interconnected by connexin36-based gap junctions, known as electrical synapses. Electrical synapses have been shown to coordinate neuronal rhythms, including thalamocortical spindle rhythms, but their role in shaping or modulating transient activity is less understood. We constructed a four-cell model of thalamic relay and TRN neurons, and used it to investigate the impact of electrical synapses on closely timed inputs delivered to thalamic relay cells. We show that the electrical synapses of the TRN assist cortical discrimination of these inputs through effects of truncation, delay or inhibition of thalamic spike trains. We expect that these are principles whereby electrical synapses play similar roles in regulating the processing of transient activity in excitatory neurons across the brain.
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Affiliation(s)
- Tuan Pham
- Department of Biological Sciences, Lehigh University, Bethlehem, PA, USA
| | - Julie S Haas
- Department of Biological Sciences, Lehigh University, Bethlehem, PA, USA.
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20
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Zarudnyi K, Mehonic A, Montesi L, Buckwell M, Hudziak S, Kenyon AJ. Spike-Timing Dependent Plasticity in Unipolar Silicon Oxide RRAM Devices. Front Neurosci 2018; 12:57. [PMID: 29472837 PMCID: PMC5809439 DOI: 10.3389/fnins.2018.00057] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2017] [Accepted: 01/23/2018] [Indexed: 11/13/2022] Open
Abstract
Resistance switching, or Resistive RAM (RRAM) devices show considerable potential for application in hardware spiking neural networks (neuro-inspired computing) by mimicking some of the behavior of biological synapses, and hence enabling non-von Neumann computer architectures. Spike-timing dependent plasticity (STDP) is one such behavior, and one example of several classes of plasticity that are being examined with the aim of finding suitable algorithms for application in many computing tasks such as coincidence detection, classification and image recognition. In previous work we have demonstrated that the neuromorphic capabilities of silicon-rich silicon oxide (SiOx) resistance switching devices extend beyond plasticity to include thresholding, spiking, and integration. We previously demonstrated such behaviors in devices operated in the unipolar mode, opening up the question of whether we could add plasticity to the list of features exhibited by our devices. Here we demonstrate clear STDP in unipolar devices. Significantly, we show that the response of our devices is broadly similar to that of biological synapses. This work further reinforces the potential of simple two-terminal RRAM devices to mimic neuronal functionality in hardware spiking neural networks.
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Affiliation(s)
- Konstantin Zarudnyi
- Department of Electronic and Electrical Engineering, University College London, London, United Kingdom
| | - Adnan Mehonic
- Department of Electronic and Electrical Engineering, University College London, London, United Kingdom
| | - Luca Montesi
- Department of Electronic and Electrical Engineering, University College London, London, United Kingdom
| | - Mark Buckwell
- Department of Electronic and Electrical Engineering, University College London, London, United Kingdom
| | - Stephen Hudziak
- Department of Electronic and Electrical Engineering, University College London, London, United Kingdom
| | - Anthony J Kenyon
- Department of Electronic and Electrical Engineering, University College London, London, United Kingdom
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21
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Spike pattern recognition using artificial neuron and spike-timing-dependent plasticity implemented on a multi-core embedded platform. ARTIFICIAL LIFE AND ROBOTICS 2017. [DOI: 10.1007/s10015-017-0421-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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22
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Xu Z, Skorheim S, Tu M, Berisha V, Yu S, Seo JS, Bazhenov M, Cao Y. Improving efficiency in sparse learning with the feedforward inhibitory motif. Neurocomputing 2017. [DOI: 10.1016/j.neucom.2017.05.016] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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23
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Wang J, Breen D, Akinin A, Broccard F, Abarbanel HDI, Cauwenberghs G. Assimilation of Biophysical Neuronal Dynamics in Neuromorphic VLSI. IEEE TRANSACTIONS ON BIOMEDICAL CIRCUITS AND SYSTEMS 2017; 11:1258-1270. [PMID: 29324422 DOI: 10.1109/tbcas.2017.2776198] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Representing the biophysics of neuronal dynamics and behavior offers a principled analysis-by-synthesis approach toward understanding mechanisms of nervous system functions. We report on a set of procedures assimilating and emulating neurobiological data on a neuromorphic very large scale integrated (VLSI) circuit. The analog VLSI chip, NeuroDyn, features 384 digitally programmable parameters specifying for 4 generalized Hodgkin-Huxley neurons coupled through 12 conductance-based chemical synapses. The parameters also describe reversal potentials, maximal conductances, and spline regressed kinetic functions for ion channel gating variables. In one set of experiments, we assimilated membrane potential recorded from one of the neurons on the chip to the model structure upon which NeuroDyn was designed using the known current input sequence. We arrived at the programmed parameters except for model errors due to analog imperfections in the chip fabrication. In a related set of experiments, we replicated songbird individual neuron dynamics on NeuroDyn by estimating and configuring parameters extracted using data assimilation from intracellular neural recordings. Faithful emulation of detailed biophysical neural dynamics will enable the use of NeuroDyn as a tool to probe electrical and molecular properties of functional neural circuits. Neuroscience applications include studying the relationship between molecular properties of neurons and the emergence of different spike patterns or different brain behaviors. Clinical applications include studying and predicting effects of neuromodulators or neurodegenerative diseases on ion channel kinetics.
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Broccard FD, Joshi S, Wang J, Cauwenberghs G. Neuromorphic neural interfaces: from neurophysiological inspiration to biohybrid coupling with nervous systems. J Neural Eng 2017; 14:041002. [PMID: 28573983 DOI: 10.1088/1741-2552/aa67a9] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
OBJECTIVE Computation in nervous systems operates with different computational primitives, and on different hardware, than traditional digital computation and is thus subjected to different constraints from its digital counterpart regarding the use of physical resources such as time, space and energy. In an effort to better understand neural computation on a physical medium with similar spatiotemporal and energetic constraints, the field of neuromorphic engineering aims to design and implement electronic systems that emulate in very large-scale integration (VLSI) hardware the organization and functions of neural systems at multiple levels of biological organization, from individual neurons up to large circuits and networks. Mixed analog/digital neuromorphic VLSI systems are compact, consume little power and operate in real time independently of the size and complexity of the model. APPROACH This article highlights the current efforts to interface neuromorphic systems with neural systems at multiple levels of biological organization, from the synaptic to the system level, and discusses the prospects for future biohybrid systems with neuromorphic circuits of greater complexity. MAIN RESULTS Single silicon neurons have been interfaced successfully with invertebrate and vertebrate neural networks. This approach allowed the investigation of neural properties that are inaccessible with traditional techniques while providing a realistic biological context not achievable with traditional numerical modeling methods. At the network level, populations of neurons are envisioned to communicate bidirectionally with neuromorphic processors of hundreds or thousands of silicon neurons. Recent work on brain-machine interfaces suggests that this is feasible with current neuromorphic technology. SIGNIFICANCE Biohybrid interfaces between biological neurons and VLSI neuromorphic systems of varying complexity have started to emerge in the literature. Primarily intended as a computational tool for investigating fundamental questions related to neural dynamics, the sophistication of current neuromorphic systems now allows direct interfaces with large neuronal networks and circuits, resulting in potentially interesting clinical applications for neuroengineering systems, neuroprosthetics and neurorehabilitation.
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Affiliation(s)
- Frédéric D Broccard
- Institute for Neural Computation, UC San Diego, United States of America. Department of Bioengineering, UC San Diego, United States of America
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25
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Pani D, Meloni P, Tuveri G, Palumbo F, Massobrio P, Raffo L. An FPGA Platform for Real-Time Simulation of Spiking Neuronal Networks. Front Neurosci 2017; 11:90. [PMID: 28293163 PMCID: PMC5328944 DOI: 10.3389/fnins.2017.00090] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2017] [Accepted: 02/10/2017] [Indexed: 11/17/2022] Open
Abstract
In the last years, the idea to dynamically interface biological neurons with artificial ones has become more and more urgent. The reason is essentially due to the design of innovative neuroprostheses where biological cell assemblies of the brain can be substituted by artificial ones. For closed-loop experiments with biological neuronal networks interfaced with in silico modeled networks, several technological challenges need to be faced, from the low-level interfacing between the living tissue and the computational model to the implementation of the latter in a suitable form for real-time processing. Field programmable gate arrays (FPGAs) can improve flexibility when simple neuronal models are required, obtaining good accuracy, real-time performance, and the possibility to create a hybrid system without any custom hardware, just programming the hardware to achieve the required functionality. In this paper, this possibility is explored presenting a modular and efficient FPGA design of an in silico spiking neural network exploiting the Izhikevich model. The proposed system, prototypically implemented on a Xilinx Virtex 6 device, is able to simulate a fully connected network counting up to 1,440 neurons, in real-time, at a sampling rate of 10 kHz, which is reasonable for small to medium scale extra-cellular closed-loop experiments.
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Affiliation(s)
- Danilo Pani
- EOLab - Microelectronics and Bioengineering Lab, Department of Electrical and Electronic Engineering, University of Cagliari Cagliari, Italy
| | - Paolo Meloni
- EOLab - Microelectronics and Bioengineering Lab, Department of Electrical and Electronic Engineering, University of Cagliari Cagliari, Italy
| | - Giuseppe Tuveri
- EOLab - Microelectronics and Bioengineering Lab, Department of Electrical and Electronic Engineering, University of Cagliari Cagliari, Italy
| | - Francesca Palumbo
- Information Engineering Unit, PolComIng Department, University of Sassari Sassari, Italy
| | - Paolo Massobrio
- Neuroengineering and Bio-nano Technology Lab, Dibris, University of Genova Genova, Italy
| | - Luigi Raffo
- EOLab - Microelectronics and Bioengineering Lab, Department of Electrical and Electronic Engineering, University of Cagliari Cagliari, Italy
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Chiolerio A, Chiappalone M, Ariano P, Bocchini S. Coupling Resistive Switching Devices with Neurons: State of the Art and Perspectives. Front Neurosci 2017; 11:70. [PMID: 28261048 PMCID: PMC5309244 DOI: 10.3389/fnins.2017.00070] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2016] [Accepted: 01/31/2017] [Indexed: 11/13/2022] Open
Abstract
Here we provide the state-of-the-art of bioelectronic interfacing between biological neuronal systems and artificial components, focusing the attention on the potentiality offered by intrinsically neuromorphic synthetic devices based on Resistive Switching (RS). Neuromorphic engineering is outside the scopes of this Perspective. Instead, our focus is on those materials and devices featuring genuine physical effects that could be sought as non-linearity, plasticity, excitation, and extinction which could be directly and more naturally coupled with living biological systems. In view of important applications, such as prosthetics and future life augmentation, a cybernetic parallelism is traced, between biological and artificial systems. We will discuss how such intrinsic features could reduce the complexity of conditioning networks for a more natural direct connection between biological and synthetic worlds. Putting together living systems with RS devices could represent a feasible though innovative perspective for the future of bionics.
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Affiliation(s)
- Alessandro Chiolerio
- Center for Sustainable Future Technologies, Istituto Italiano di Tecnologia Torino, Italy
| | - Michela Chiappalone
- Neuroscience and Brain Technologies Department, Istituto Italiano di Tecnologia Genova, Italy
| | - Paolo Ariano
- Center for Sustainable Future Technologies, Istituto Italiano di Tecnologia Torino, Italy
| | - Sergio Bocchini
- Center for Sustainable Future Technologies, Istituto Italiano di Tecnologia Torino, Italy
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Gu Q, Cao H, Xuan M, Luo W, Guan X, Xu J, Huang P, Zhang M, Xu X. Increased thalamic centrality and putamen-thalamic connectivity in patients with parkinsonian resting tremor. Brain Behav 2017; 7:e00601. [PMID: 28127519 PMCID: PMC5256184 DOI: 10.1002/brb3.601] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/15/2016] [Revised: 09/27/2016] [Accepted: 09/27/2016] [Indexed: 01/18/2023] Open
Abstract
INTRODUCTION Evidence has indicated a strong association between hyperactivity in the cerebello-thalamo-motor cortical loop and resting tremor in Parkinson's disease (PD). Within this loop, the thalamus serves as a central hub based on its structural centrality in the generation of resting tremor. To study whether this thalamic abnormality leads to an alteration at the whole-brain level, our study investigated the role of the thalamus in patients with parkinsonian resting tremor in a large-scale brain network context. METHODS Forty-one patients with PD (22 with resting tremor, TP and 19 without resting tremor, NTP) and 45 healthy controls (HC) were included in this resting-state functional MRI study. Graph theory-based network analysis was performed to examine the centrality measures of bilateral thalami across the three groups. To further provide evidence to the central role of the thalamus in parkinsonian resting tremor, the seed-based functional connectivity analysis was then used to quantify the functional interactions between the basal ganglia and the thalamus. RESULTS Compared with the HC group, patients with the TP group exhibited increased degree centrality (p < .04), betweenness centrality (p < .01), and participation coefficient (p < .01) in the bilateral thalami. Two of these alterations (degree centrality and participation coefficient) were significantly correlated with tremor severity, especially in the left hemisphere (p < .02). The modular analysis showed that the TP group had more intermodular connections between the thalamus and the regions within the cerebello-thalamo-motor cortical loop. Furthermore, the data revealed significantly enhanced functional connectivity between the putamen and the thalamus in the TP group (p = .027 corrected for family-wise error). CONCLUSIONS These findings suggest increased thalamic centrality as a potential tremor-specific imaging measure for PD, and provide evidence for the altered putamen-thalamic interaction in patients with resting tremor.
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Affiliation(s)
- Quanquan Gu
- Department of RadiologyThe Second Affiliated HospitalZhejiang University School of MedicineHangzhouChina
| | - Hengyi Cao
- Department of Psychiatry and PsychotherapyCentral Institute of Mental HealthUniversity of Heidelberg Medical Faculty MannheimMannheimGermany
| | - Min Xuan
- Department of RadiologyThe Second Affiliated HospitalZhejiang University School of MedicineHangzhouChina
| | - Wei Luo
- Department of NeurologyThe Second Affiliated HospitalZhejiang University School of MedicineHangzhouChina
| | - Xiaojun Guan
- Department of RadiologyThe Second Affiliated HospitalZhejiang University School of MedicineHangzhouChina
| | - Jingjing Xu
- Department of RadiologyThe Second Affiliated HospitalZhejiang University School of MedicineHangzhouChina
| | - Peiyu Huang
- Department of RadiologyThe Second Affiliated HospitalZhejiang University School of MedicineHangzhouChina
| | - Minming Zhang
- Department of RadiologyThe Second Affiliated HospitalZhejiang University School of MedicineHangzhouChina
| | - Xiaojun Xu
- Department of RadiologyThe Second Affiliated HospitalZhejiang University School of MedicineHangzhouChina
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28
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Ha GE, Lee J, Kwak H, Song K, Kwon J, Jung SY, Hong J, Chang GE, Hwang EM, Shin HS, Lee CJ, Cheong E. The Ca 2+-activated chloride channel anoctamin-2 mediates spike-frequency adaptation and regulates sensory transmission in thalamocortical neurons. Nat Commun 2016; 7:13791. [PMID: 27991499 PMCID: PMC5187435 DOI: 10.1038/ncomms13791] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2016] [Accepted: 11/02/2016] [Indexed: 12/22/2022] Open
Abstract
Neuronal firing patterns, which are crucial for determining the nature of encoded information, have been widely studied; however, the molecular identity and cellular mechanisms of spike-frequency adaptation are still not fully understood. Here we show that spike-frequency adaptation in thalamocortical (TC) neurons is mediated by the Ca2+-activated Cl− channel (CACC) anoctamin-2 (ANO2). Knockdown of ANO2 in TC neurons results in significantly reduced spike-frequency adaptation along with increased tonic spiking. Moreover, thalamus-specific knockdown of ANO2 increases visceral pain responses. These results indicate that ANO2 contributes to reductions in spike generation in highly activated TC neurons and thereby restricts persistent information transmission.
Spike-frequency adaptation in thalamocortical (TC) neurons is important for sensory transmission though the underlying mechanisms are not fully understood. Here, the authors identify a role for the calcium-activated chloride channel, ANO2, in mediating TC spiking adaptations and visceral pain response.
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Affiliation(s)
- Go Eun Ha
- Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul 03722, Republic of Korea
| | - Jaekwang Lee
- Center for Neural Science, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea
| | - Hankyul Kwak
- Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul 03722, Republic of Korea
| | - Kiyeong Song
- Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul 03722, Republic of Korea
| | - Jea Kwon
- Center for Neural Science, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea
| | - Soon-Young Jung
- Center for Neural Science, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea
| | - Joohyeon Hong
- Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul 03722, Republic of Korea
| | - Gyeong-Eon Chang
- Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul 03722, Republic of Korea
| | - Eun Mi Hwang
- Center for Functional Connectomics, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea
| | - Hee-Sup Shin
- Center for Cognition and Sociality, Institute for Basic Science, Daejeon 34141, Republic of Korea
| | - C Justin Lee
- Center for Neural Science, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea
| | - Eunji Cheong
- Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul 03722, Republic of Korea
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Huh Y, Cho J. Differential Responses of Thalamic Reticular Neurons to Nociception in Freely Behaving Mice. Front Behav Neurosci 2016; 10:223. [PMID: 27917114 PMCID: PMC5116476 DOI: 10.3389/fnbeh.2016.00223] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2016] [Accepted: 11/07/2016] [Indexed: 12/04/2022] Open
Abstract
Pain serves an important protective role. However, it can also have debilitating adverse effects if dysfunctional, such as in pathological pain conditions. As part of the thalamocortical circuit, the thalamic reticular nucleus (TRN) has been implicated to have important roles in controlling nociceptive signal transmission. However studies on how TRN neurons, especially how TRN neuronal subtypes categorized by temporal bursting firing patterns—typical bursting, atypical bursting and non-bursting TRN neurons—contribute to nociceptive signal modulation is not known. To reveal the relationship between TRN neuronal subtypes and modulation of nociception, we simultaneously recorded behavioral responses and TRN neuronal activity to formalin induced nociception in freely moving mice. We found that typical bursting TRN neurons had the most robust response to nociception; changes in tonic firing rate of typical TRN neurons exactly matched changes in behavioral nociceptive responses, and burst firing rate of these neurons increased significantly when behavioral nociceptive responses were reduced. This implies that typical TRN neurons could critically modulate ascending nociceptive signals. The role of other TRN neuronal subtypes was less clear; atypical bursting TRN neurons decreased tonic firing rate after the second peak of behavioral nociception and the firing rate of non-bursting TRN neurons mostly remained at baseline level. Overall, our results suggest that different TRN neuronal subtypes contribute differentially to processing formalin induced sustained nociception in freely moving mice.
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Affiliation(s)
- Yeowool Huh
- Center for Neural Science, Korea Institute of Science and TechnologySeoul, South Korea; Department of Neuroscience, University of Science and TechnologyDaejeon, South Korea
| | - Jeiwon Cho
- Center for Neural Science, Korea Institute of Science and TechnologySeoul, South Korea; Department of Neuroscience, University of Science and TechnologyDaejeon, South Korea
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Qian C, Sun J, Kong LA, Gou G, Yang J, He J, Gao Y, Wan Q. Artificial Synapses Based on in-Plane Gate Organic Electrochemical Transistors. ACS APPLIED MATERIALS & INTERFACES 2016; 8:26169-26175. [PMID: 27608136 DOI: 10.1021/acsami.6b08866] [Citation(s) in RCA: 61] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Realization of biological synapses using electronic devices is regarded as the basic building blocks for neuromorphic engineering and artificial neural network. With the advantages of biocompatibility, low cost, flexibility, and compatible with printing and roll-to-roll processes, the artificial synapse based on organic transistor is of great interest. In this paper, the artificial synapse simulation by ion-gel gated organic field-effect transistors (FETs) with poly(3-hexylthiophene) (P3HT) active channel is demonstrated. Key features of the synaptic behaviors, such as paired-pulse facilitation (PPF), short-term plasticity (STP), self-tuning, the spike logic operation, spatiotemporal dentritic integration, and modulation are successfully mimicked. Furthermore, the interface doping processes of electrolyte ions between the active P3HT layer and ion gels is comprehensively studied for confirming the operating processes underlying the conductivity and excitatory postsynaptic current (EPSC) variations in the organic synaptic devices. This study represents an important step toward building future artificial neuromorphic systems with newly emerged ion gel gated organic synaptic devices.
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Affiliation(s)
- Chuan Qian
- Hunan Key Laboratory for Super Microstructure and Ultrafast Process, School of Physics and Electronics, Central South University , Changsha, Hunan 410083, P. R. China
| | - Jia Sun
- Hunan Key Laboratory for Super Microstructure and Ultrafast Process, School of Physics and Electronics, Central South University , Changsha, Hunan 410083, P. R. China
| | - Ling-An Kong
- Hunan Key Laboratory for Super Microstructure and Ultrafast Process, School of Physics and Electronics, Central South University , Changsha, Hunan 410083, P. R. China
| | - Guangyang Gou
- Hunan Key Laboratory for Super Microstructure and Ultrafast Process, School of Physics and Electronics, Central South University , Changsha, Hunan 410083, P. R. China
| | - Junliang Yang
- Hunan Key Laboratory for Super Microstructure and Ultrafast Process, School of Physics and Electronics, Central South University , Changsha, Hunan 410083, P. R. China
| | - Jun He
- Hunan Key Laboratory for Super Microstructure and Ultrafast Process, School of Physics and Electronics, Central South University , Changsha, Hunan 410083, P. R. China
| | - Yongli Gao
- Hunan Key Laboratory for Super Microstructure and Ultrafast Process, School of Physics and Electronics, Central South University , Changsha, Hunan 410083, P. R. China
- Department of Physics and Astronomy, University of Rochester , Rochester, New York 14627, United States
| | - Qing Wan
- School of Electronic Science & Engineering, and Collaborative Innovation Center of Advanced Microstructures, Nanjing University , Nanjing 210093, P. R. China
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32
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Matias FS, Gollo LL, Carelli PV, Mirasso CR, Copelli M. Inhibitory loop robustly induces anticipated synchronization in neuronal microcircuits. Phys Rev E 2016; 94:042411. [PMID: 27841618 DOI: 10.1103/physreve.94.042411] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Indexed: 06/06/2023]
Abstract
We investigate the synchronization properties between two excitatory coupled neurons in the presence of an inhibitory loop mediated by an interneuron. Dynamic inhibition together with noise independently applied to each neuron provide phase diversity in the dynamics of the neuronal motif. We show that the interplay between the coupling strengths and the external noise controls the phase relations between the neurons in a counterintuitive way. For a master-slave configuration (unidirectional coupling) we find that the slave can anticipate the master, on average, if the slave is subject to the inhibitory feedback. In this nonusual regime, called anticipated synchronization (AS), the phase of the postsynaptic neuron is advanced with respect to that of the presynaptic neuron. We also show that the AS regime survives even in the presence of unbalanced bidirectional excitatory coupling. Moreover, for the symmetric mutually coupled situation, the neuron that is subject to the inhibitory loop leads in phase.
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Affiliation(s)
- Fernanda S Matias
- Instituto de Física, Universidade Federal de Alagoas, Maceió, Alagoas 57072-970, Brazil
| | - Leonardo L Gollo
- System Neuroscience Group, Queensland Institute of Medical Research, Brisbane QLD 4006, Australia
| | - Pedro V Carelli
- Departamento de Física, Universidade Federal de Pernambuco, Recife, Pernambuco 50670-901, Brazil
| | - Claudio R Mirasso
- Instituto de Fisica Interdisciplinar y Sistemas Complejos, CSIC-UIB, Campus Universitat de les Illes Balears, E-07122 Palma de Mallorca, Spain
| | - Mauro Copelli
- Departamento de Física, Universidade Federal de Pernambuco, Recife, Pernambuco 50670-901, Brazil
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Vassanelli S, Mahmud M. Trends and Challenges in Neuroengineering: Toward "Intelligent" Neuroprostheses through Brain-"Brain Inspired Systems" Communication. Front Neurosci 2016; 10:438. [PMID: 27721741 PMCID: PMC5034009 DOI: 10.3389/fnins.2016.00438] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2016] [Accepted: 09/09/2016] [Indexed: 11/30/2022] Open
Abstract
Future technologies aiming at restoring and enhancing organs function will intimately rely on near-physiological and energy-efficient communication between living and artificial biomimetic systems. Interfacing brain-inspired devices with the real brain is at the forefront of such emerging field, with the term "neurobiohybrids" indicating all those systems where such interaction is established. We argue that achieving a "high-level" communication and functional synergy between natural and artificial neuronal networks in vivo, will allow the development of a heterogeneous world of neurobiohybrids, which will include "living robots" but will also embrace "intelligent" neuroprostheses for augmentation of brain function. The societal and economical impact of intelligent neuroprostheses is likely to be potentially strong, as they will offer novel therapeutic perspectives for a number of diseases, and going beyond classical pharmaceutical schemes. However, they will unavoidably raise fundamental ethical questions on the intermingling between man and machine and more specifically, on how deeply it should be allowed that brain processing is affected by implanted "intelligent" artificial systems. Following this perspective, we provide the reader with insights on ongoing developments and trends in the field of neurobiohybrids. We address the topic also from a "community building" perspective, showing through a quantitative bibliographic analysis, how scientists working on the engineering of brain-inspired devices and brain-machine interfaces are increasing their interactions. We foresee that such trend preludes to a formidable technological and scientific revolution in brain-machine communication and to the opening of new avenues for restoring or even augmenting brain function for therapeutic purposes.
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Affiliation(s)
- Stefano Vassanelli
- NeuroChip Laboratory, Department of Biomedical Sciences, University of PadovaPadova, Italy
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Microfluidic Neurons, a New Way in Neuromorphic Engineering? MICROMACHINES 2016; 7:mi7080146. [PMID: 30404317 PMCID: PMC6189925 DOI: 10.3390/mi7080146] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/20/2016] [Revised: 08/14/2016] [Accepted: 08/18/2016] [Indexed: 01/15/2023]
Abstract
This article describes a new way to explore neuromorphic engineering, the biomimetic artificial neuron using microfluidic techniques. This new device could replace silicon neurons and solve the issues of biocompatibility and power consumption. The biological neuron transmits electrical signals based on ion flow through their plasma membrane. Action potentials are propagated along axons and represent the fundamental electrical signals by which information are transmitted from one place to another in the nervous system. Based on this physiological behavior, we propose a microfluidic structure composed of chambers representing the intra and extracellular environments, connected by channels actuated by Quake valves. These channels are equipped with selective ion permeable membranes to mimic the exchange of chemical species found in the biological neuron. A thick polydimethylsiloxane (PDMS) membrane is used to create the Quake valve membrane. Integrated electrodes are used to measure the potential difference between the intracellular and extracellular environments: the membrane potential.
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Abstract
Neuromorphic computing covers a diverse range of approaches to information processing all of which demonstrate some degree of neurobiological inspiration that differentiates them from mainstream conventional computing systems. The philosophy behind neuromorphic computing has its origins in the seminal work carried out by Carver Mead at Caltech in the late 1980s. This early work influenced others to carry developments forward, and advances in VLSI technology supported steady growth in the scale and capability of neuromorphic devices. Recently, a number of large-scale neuromorphic projects have emerged, taking the approach to unprecedented scales and capabilities. These large-scale projects are associated with major new funding initiatives for brain-related research, creating a sense that the time and circumstances are right for progress in our understanding of information processing in the brain. In this review we present a brief history of neuromorphic engineering then focus on some of the principal current large-scale projects, their main features, how their approaches are complementary and distinct, their advantages and drawbacks, and highlight the sorts of capabilities that each can deliver to neural modellers.
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Affiliation(s)
- Steve Furber
- School of Computer Science, The University of Manchester Oxford Road, Manchester M13 9PL UK
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36
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Mehonic A, Kenyon AJ. Emulating the Electrical Activity of the Neuron Using a Silicon Oxide RRAM Cell. Front Neurosci 2016; 10:57. [PMID: 26941598 PMCID: PMC4763078 DOI: 10.3389/fnins.2016.00057] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2015] [Accepted: 02/08/2016] [Indexed: 11/19/2022] Open
Abstract
In recent years, formidable effort has been devoted to exploring the potential of Resistive RAM (RRAM) devices to model key features of biological synapses. This is done to strengthen the link between neuro-computing architectures and neuroscience, bearing in mind the extremely low power consumption and immense parallelism of biological systems. Here we demonstrate the feasibility of using the RRAM cell to go further and to model aspects of the electrical activity of the neuron. We focus on the specific operational procedures required for the generation of controlled voltage transients, which resemble spike-like responses. Further, we demonstrate that RRAM devices are capable of integrating input current pulses over time to produce thresholded voltage transients. We show that the frequency of the output transients can be controlled by the input signal, and we relate recent models of the redox-based nanoionic resistive memory cell to two common neuronal models, the Hodgkin-Huxley (HH) conductance model and the leaky integrate-and-fire model. We employ a simplified circuit model to phenomenologically describe voltage transient generation.
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Affiliation(s)
- Adnan Mehonic
- Department of Electronic and Electrical Engineering, University College London London, UK
| | - Anthony J Kenyon
- Department of Electronic and Electrical Engineering, University College London London, UK
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Béhuret S, Deleuze C, Bal T. Corticothalamic Synaptic Noise as a Mechanism for Selective Attention in Thalamic Neurons. Front Neural Circuits 2015; 9:80. [PMID: 26733818 PMCID: PMC4686626 DOI: 10.3389/fncir.2015.00080] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2015] [Accepted: 11/27/2015] [Indexed: 12/04/2022] Open
Abstract
A reason why the thalamus is more than a passive gateway for sensory signals is that two-third of the synapses of thalamocortical neurons are directly or indirectly related to the activity of corticothalamic axons. While the responses of thalamocortical neurons evoked by sensory stimuli are well characterized, with ON- and OFF-center receptive field structures, the prevalence of synaptic noise resulting from neocortical feedback in intracellularly recorded thalamocortical neurons in vivo has attracted little attention. However, in vitro and modeling experiments point to its critical role for the integration of sensory signals. Here we combine our recent findings in a unified framework suggesting the hypothesis that corticothalamic synaptic activity is adapted to modulate the transfer efficiency of thalamocortical neurons during selective attention at three different levels: First, on ionic channels by interacting with intrinsic membrane properties, second at the neuron level by impacting on the input-output gain, and third even more effectively at the cell assembly level by boosting the information transfer of sensory features encoded in thalamic subnetworks. This top-down population control is achieved by tuning the correlations in subthreshold membrane potential fluctuations and is adapted to modulate the transfer of sensory features encoded by assemblies of thalamocortical relay neurons. We thus propose that cortically-controlled (de-)correlation of subthreshold noise is an efficient and swift dynamic mechanism for selective attention in the thalamus.
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Affiliation(s)
- Sébastien Béhuret
- Unité de Neurosciences, Information et Complexité, Centre National de la Recherche Scientifique FRE-3693 Gif-sur-Yvette, France
| | - Charlotte Deleuze
- Unité de Neurosciences, Information et Complexité, Centre National de la Recherche Scientifique FRE-3693Gif-sur-Yvette, France; Institut National de la Santé et de la Recherche Médicale U 1127, Centre National de la Recherche Scientifique UMR 7225, Sorbonne Universités, UPMC Univ Paris 06 UMR S 1127, Institut du Cerveau et de la Moelle ÉpinièreParis, France
| | - Thierry Bal
- Unité de Neurosciences, Information et Complexité, Centre National de la Recherche Scientifique FRE-3693 Gif-sur-Yvette, France
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Herrera CG, Cadavieco MC, Jego S, Ponomarenko A, Korotkova T, Adamantidis A. Hypothalamic feedforward inhibition of thalamocortical network controls arousal and consciousness. Nat Neurosci 2015; 19:290-8. [PMID: 26691833 PMCID: PMC5818272 DOI: 10.1038/nn.4209] [Citation(s) in RCA: 178] [Impact Index Per Article: 19.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2015] [Accepted: 11/30/2015] [Indexed: 02/07/2023]
Abstract
During non-rapid eye movement (NREM) sleep, synchronous synaptic activity in the thalamocortical network generates predominantly low-frequency oscillations (<4 Hz) that are modulated by inhibitory inputs from the thalamic reticular nucleus (TRN). Whether TRN cells integrate sleep-wake signals from subcortical circuits remains unclear. We found that GABA neurons from the lateral hypothalamus (LHGABA) exert a strong inhibitory control over TRN GABA neurons (TRNGABA). We found that optogenetic activation of this circuit recapitulated state-dependent changes of TRN neuron activity in behaving mice and induced rapid arousal during NREM, but not REM, sleep. During deep anesthesia, activation of this circuit induced sustained cortical arousal. In contrast, optogenetic silencing of LHGABA-TRNGABA transmission increased the duration of NREM sleep and amplitude of delta (1-4 Hz) oscillations. Collectively, these results demonstrate that TRN cells integrate subcortical arousal inputs selectively during NREM sleep and may participate in sleep intensity.
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Affiliation(s)
- Carolina Gutierrez Herrera
- Department of Neurology, Inselspital University Hospital, University of Bern, Bern, Switzerland.,Douglas Mental Health University Institute, Department of Psychiatry, McGill University, Montreal, Canada.,Department of Preclinical Research (DKF), University of Bern, Bern, Switzerland
| | - Marta Carus Cadavieco
- Leibniz Institute for Molecular Pharmacology (FMP)/NeuroCure Cluster of Excellence, Berlin, Germany
| | - Sonia Jego
- Douglas Mental Health University Institute, Department of Psychiatry, McGill University, Montreal, Canada
| | - Alexey Ponomarenko
- Leibniz Institute for Molecular Pharmacology (FMP)/NeuroCure Cluster of Excellence, Berlin, Germany
| | - Tatiana Korotkova
- Leibniz Institute for Molecular Pharmacology (FMP)/NeuroCure Cluster of Excellence, Berlin, Germany
| | - Antoine Adamantidis
- Department of Neurology, Inselspital University Hospital, University of Bern, Bern, Switzerland.,Douglas Mental Health University Institute, Department of Psychiatry, McGill University, Montreal, Canada.,Department of Preclinical Research (DKF), University of Bern, Bern, Switzerland
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Pillay S, Liu X, Baracskay P, Hudetz AG. Brainstem stimulation increases functional connectivity of basal forebrain-paralimbic network in isoflurane-anesthetized rats. Brain Connect 2015; 4:523-34. [PMID: 25090190 DOI: 10.1089/brain.2014.0254] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
Abstract
Brain states and cognitive-behavioral functions are precisely controlled by subcortical neuromodulatory networks. Manipulating key components of the ascending arousal system (AAS), via deep-brain stimulation, may help facilitate global arousal in anesthetized animals. Here we test the hypothesis that electrical stimulation of the oral part of the pontine reticular nucleus (PnO) under light isoflurane anesthesia, associated with loss of consciousness, leads to cortical desynchronization and specific changes in blood-oxygenation-level-dependent (BOLD) functional connectivity (FC) of the brain. BOLD signals were acquired simultaneously with frontal epidural electroencephalogram before and after PnO stimulation. Whole-brain FC was mapped using correlation analysis with seeds in major centers of the AAS. PnO stimulation produced cortical desynchronization, a decrease in δ- and θ-band power, and an increase in approximate entropy. Significant increases in FC after PnO stimulation occurred between the left nucleus Basalis of Meynert (NBM) as seed and numerous regions of the paralimbic network. Smaller increases in FC were present between the central medial thalamic nucleus and retrosplenium seeds and the left caudate putamen and NBM. The results suggest that, during light anesthesia, PnO stimulation preferentially modulates basal forebrain-paralimbic networks. We speculate that this may be a reflection of disconnected awareness.
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Affiliation(s)
- Siveshigan Pillay
- 1 Department of Anesthesiology, Medical College of Wisconsin , Milwaukee, Wisconsin
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40
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Zhang D, Wu S, Rasch MJ. Circuit motifs for contrast-adaptive differentiation in early sensory systems: the role of presynaptic inhibition and short-term plasticity. PLoS One 2015; 10:e0118125. [PMID: 25723493 PMCID: PMC4344245 DOI: 10.1371/journal.pone.0118125] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2014] [Accepted: 01/06/2015] [Indexed: 01/26/2023] Open
Abstract
In natural signals, such as the luminance value across of a visual scene, abrupt changes in intensity value are often more relevant to an organism than intensity values at other positions and times. Thus to reduce redundancy, sensory systems are specialized to detect the times and amplitudes of informative abrupt changes in the input stream rather than coding the intensity values at all times. In theory, a system that responds transiently to fast changes is called a differentiator. In principle, several different neural circuit mechanisms exist that are capable of responding transiently to abrupt input changes. However, it is unclear which circuit would be best suited for early sensory systems, where the dynamic range of the natural input signals can be very wide. We here compare the properties of different simple neural circuit motifs for implementing signal differentiation. We found that a circuit motif based on presynaptic inhibition (PI) is unique in a sense that the vesicle resources in the presynaptic site can be stably maintained over a wide range of stimulus intensities, making PI a biophysically plausible mechanism to implement a differentiator with a very wide dynamical range. Moreover, by additionally considering short-term plasticity (STP), differentiation becomes contrast adaptive in the PI-circuit but not in other potential neural circuit motifs. Numerical simulations show that the behavior of the adaptive PI-circuit is consistent with experimental observations suggesting that adaptive presynaptic inhibition might be a good candidate neural mechanism to achieve differentiation in early sensory systems.
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Affiliation(s)
- Danke Zhang
- Department of Biomedical Engineering, Hangzhou Dianzi University, Hangzhou, China
- State Key Laboratory of Cognitive Neuroscience and Learning, IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China
| | - Si Wu
- State Key Laboratory of Cognitive Neuroscience and Learning, IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China
| | - Malte J. Rasch
- State Key Laboratory of Cognitive Neuroscience and Learning, IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China
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Abstract
The human connectome will provide a detailed mapping of the brain's connectivity, with fundamental insights for health and disease. However, further understanding of brain function and dysfunction will require an integrated framework that links brain connectivity with brain dynamics, as well as the biological details that relate this connectivity more directly to function. In this Perspective, we describe such a framework for studying the brain's "dynome" and its relationship to cognition.
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Affiliation(s)
- Nancy J Kopell
- Department of Mathematics and Statistics, Boston University, Boston, MA 02215, USA.
| | - Howard J Gritton
- Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA
| | - Miles A Whittington
- The Hull York Medical School, University of York, Heslington, York YO10 5DD, UK
| | - Mark A Kramer
- Department of Mathematics and Statistics, Boston University, Boston, MA 02215, USA
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Agarwal R, Santaniello S, Sarma SV. Generalizing performance limitations of relay neurons: application to Parkinson's disease. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2015; 2014:6573-6. [PMID: 25571502 DOI: 10.1109/embc.2014.6945134] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Relay cells are prevalent throughout sensory systems and receive two types of inputs: driving and modulating. The driving input contains receptive field properties that must be transmitted while the modulating input alters the specifics of transmission. Relay reliability of a relay cell is defined as the fraction of pulses in the driving input that generate action potentials at the neuron's output, and is in general a complicated function of the driving input, the modulating input and the cell's properties. In a recent study, we computed analytic bounds on the reliability of relay neurons for a class of Poisson driving inputs and sinusoidal modulating inputs. Here, we generalize our analysis and compute bounds on the relay reliability for any modulating input. Furthermore, we show that if the modulating input is generated by a colored Gaussian process, closed form expressions for bounds on relay reliability can be derived. We applied our analysis to investigate relay reliability of thalamic cells in health and in Parkinson's disease (PD). It is hypothesized that in health, neurons in the motor thalamus relay information only when needed and this capability is compromised in PD due to exaggerated beta-band oscillations in the modulating input from the basal ganglia (BG). To test this hypothesis, we used modulating and driving inputs simulated from a detailed computational model of the cortico-BG-thalamo-cortical motor loop and computed our theoretical bounds in both PD and healthy conditions. Our bounds match well with our empirically computed reliability and show that the relay reliability is larger in the healthy condition across the population of thalamic neurons. Furthermore, we show that the increase in power in the beta-band of the modulating input (output of BG) is causally related with the decrease in relay reliability in the PD condition.
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Béhuret S, Deleuze C, Gomez L, Frégnac Y, Bal T. Cortically-controlled population stochastic facilitation as a plausible substrate for guiding sensory transfer across the thalamic gateway. PLoS Comput Biol 2013; 9:e1003401. [PMID: 24385892 PMCID: PMC3873227 DOI: 10.1371/journal.pcbi.1003401] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2013] [Accepted: 11/04/2013] [Indexed: 11/18/2022] Open
Abstract
The thalamus is the primary gateway that relays sensory information to the cerebral cortex. While a single recipient cortical cell receives the convergence of many principal relay cells of the thalamus, each thalamic cell in turn integrates a dense and distributed synaptic feedback from the cortex. During sensory processing, the influence of this functional loop remains largely ignored. Using dynamic-clamp techniques in thalamic slices in vitro, we combined theoretical and experimental approaches to implement a realistic hybrid retino-thalamo-cortical pathway mixing biological cells and simulated circuits. The synaptic bombardment of cortical origin was mimicked through the injection of a stochastic mixture of excitatory and inhibitory conductances, resulting in a gradable correlation level of afferent activity shared by thalamic cells. The study of the impact of the simulated cortical input on the global retinocortical signal transfer efficiency revealed a novel control mechanism resulting from the collective resonance of all thalamic relay neurons. We show here that the transfer efficiency of sensory input transmission depends on three key features: i) the number of thalamocortical cells involved in the many-to-one convergence from thalamus to cortex, ii) the statistics of the corticothalamic synaptic bombardment and iii) the level of correlation imposed between converging thalamic relay cells. In particular, our results demonstrate counterintuitively that the retinocortical signal transfer efficiency increases when the level of correlation across thalamic cells decreases. This suggests that the transfer efficiency of relay cells could be selectively amplified when they become simultaneously desynchronized by the cortical feedback. When applied to the intact brain, this network regulation mechanism could direct an attentional focus to specific thalamic subassemblies and select the appropriate input lines to the cortex according to the descending influence of cortically-defined “priors”. Most of the sensory information in the early visual system is relayed from the retina to the primary visual cortex through principal relay cells in the thalamus. While relay cells receive ∼7–16% of their synapses from retina, they integrate the synaptic barrage of a dense cortical feedback, which accounts for more than 60% of their total input. This feedback is thought to carry some form of “prior” resulting from the computation performed in cortical areas, which influences the response of relay cells, presumably by regulating the transfer of sensory information to cortical areas. Nevertheless, its statistical nature (input synchronization, excitation/inhibition ratio, etc.) and the cellular mechanisms gating thalamic transfer are largely ignored. Here we implemented hybrid circuits (biological and modeled cells) reproducing the main features of the thalamic gate and explored the functional impact of various statistics of the cortical input. We found that the regulation of sensory information is critically determined by the statistical coherence of the cortical synaptic bombardment associated with a stochastic facilitation process. We propose that this tuning mechanism could operate in the intact brain to selectively filter the sensory information reaching cortical areas according to attended features predesignated by the cortical feedback.
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Affiliation(s)
- Sébastien Béhuret
- Unité de Neurosciences, Information et Complexité (UNIC), CNRS UPR-3293, Gif-sur-Yvette, France
- * E-mail: (SB); (TB)
| | - Charlotte Deleuze
- Unité de Neurosciences, Information et Complexité (UNIC), CNRS UPR-3293, Gif-sur-Yvette, France
| | - Leonel Gomez
- Unité de Neurosciences, Information et Complexité (UNIC), CNRS UPR-3293, Gif-sur-Yvette, France
- Laboratorio de Neurociencias, Facultad de Ciencias, Universidad de la República Oriental del Uruguay, Montevideo, Uruguay
| | - Yves Frégnac
- Unité de Neurosciences, Information et Complexité (UNIC), CNRS UPR-3293, Gif-sur-Yvette, France
| | - Thierry Bal
- Unité de Neurosciences, Information et Complexité (UNIC), CNRS UPR-3293, Gif-sur-Yvette, France
- * E-mail: (SB); (TB)
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Ambroise M, Levi T, Joucla S, Yvert B, Saïghi S. Real-time biomimetic Central Pattern Generators in an FPGA for hybrid experiments. Front Neurosci 2013; 7:215. [PMID: 24319408 PMCID: PMC3836270 DOI: 10.3389/fnins.2013.00215] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2013] [Accepted: 10/29/2013] [Indexed: 11/23/2022] Open
Abstract
This investigation of the leech heartbeat neural network system led to the development of a low resources, real-time, biomimetic digital hardware for use in hybrid experiments. The leech heartbeat neural network is one of the simplest central pattern generators (CPG). In biology, CPG provide the rhythmic bursts of spikes that form the basis for all muscle contraction orders (heartbeat) and locomotion (walking, running, etc.). The leech neural network system was previously investigated and this CPG formalized in the Hodgkin–Huxley neural model (HH), the most complex devised to date. However, the resources required for a neural model are proportional to its complexity. In response to this issue, this article describes a biomimetic implementation of a network of 240 CPGs in an FPGA (Field Programmable Gate Array), using a simple model (Izhikevich) and proposes a new synapse model: activity-dependent depression synapse. The network implementation architecture operates on a single computation core. This digital system works in real-time, requires few resources, and has the same bursting activity behavior as the complex model. The implementation of this CPG was initially validated by comparing it with a simulation of the complex model. Its activity was then matched with pharmacological data from the rat spinal cord activity. This digital system opens the way for future hybrid experiments and represents an important step toward hybridization of biological tissue and artificial neural networks. This CPG network is also likely to be useful for mimicking the locomotion activity of various animals and developing hybrid experiments for neuroprosthesis development.
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Affiliation(s)
- Matthieu Ambroise
- Laboratoire IMS, UMR Centre National de la Recherche Scientifique, University of Bordeaux Talence, France
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Ward LM. The thalamus: gateway to the mind. WILEY INTERDISCIPLINARY REVIEWS. COGNITIVE SCIENCE 2013; 4:609-622. [DOI: 10.1002/wcs.1256] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2013] [Revised: 07/31/2013] [Accepted: 08/06/2013] [Indexed: 11/10/2022]
Affiliation(s)
- Lawrence M. Ward
- Department of Psychology and Brain Research Centre; University of British Columbia; Vancouver BC Canada
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Abstract
Electronic realizations of neurons are of great interest as building blocks for neuromorphic computation. Electronic neurons should send signals into the input and output lines when subject to an input signal exceeding a given threshold, in such a way that they may affect all other parts of a neural network. Here, we propose a design for a neuron that is based on molecular-electronics components and thus promises a very high level of integration. We employ the Monte Carlo technique to simulate typical time evolutions of this system and thereby show that it indeed functions as a neuron.
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Affiliation(s)
- C Timm
- Institute of Theoretical Physics, Technische Universität Dresden, Dresden, Germany.
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Huh Y, Cho J. Discrete pattern of burst stimulation in the ventrobasal thalamus for anti-nociception. PLoS One 2013; 8:e67655. [PMID: 23950787 PMCID: PMC3732121 DOI: 10.1371/journal.pone.0067655] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2013] [Accepted: 05/21/2013] [Indexed: 11/18/2022] Open
Abstract
The thalamus has been proposed to play a role in sensory modulation via switching between tonic and burst dual firing of individual neurons. Of the two firing modes, altered burst firing has been repeatedly implicated with pathological pain conditions, which suggests that maintaining a certain form of thalamic burst could be crucial for controlling pain. However, specific elements of burst firing that may contribute to pain control have not yet been actively investigated. Utilizing the deep brain stimulation (DBS) technique, we explored the effects of bursting properties in pain control by electrically stimulating the ventrobasal (VB) thalamus in forms of burst patterned to test different aspects of bursts during the formalin induced nociception in mice. Our results demonstrated that electrical stimulations mimicking specific burst firing properties are important in producing an anti-nociceptive effect and found that the ≤ 3 ms interval between burst pluses (intra-burst-interval: IntraBI) and ≥ 3 pulses per burst were required to reliably reduce formalin induced nociceptive responses in mice. Periodicity of IntraBI was also suggested to contribute to anti-nociception to a limited extent.
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Affiliation(s)
- Yeowool Huh
- Center for Neural Science, Korea Institute of Science and Technology, Seoul, Korea
- Department of Neuroscience, University of Science and Technology, Daejeon, Korea
| | - Jeiwon Cho
- Center for Neural Science, Korea Institute of Science and Technology, Seoul, Korea
- Department of Neuroscience, University of Science and Technology, Daejeon, Korea
- * E-mail:
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Li J, Katori Y, Kohno T. An FPGA-Based Silicon Neuronal Network with Selectable Excitability Silicon Neurons. Front Neurosci 2012; 6:183. [PMID: 23269911 PMCID: PMC3529302 DOI: 10.3389/fnins.2012.00183] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2012] [Accepted: 12/04/2012] [Indexed: 11/13/2022] Open
Abstract
This paper presents a digital silicon neuronal network which simulates the nerve system in creatures and has the ability to execute intelligent tasks, such as associative memory. Two essential elements, the mathematical-structure-based digital spiking silicon neuron (DSSN) and the transmitter release based silicon synapse, allow us to tune the excitability of silicon neurons and are computationally efficient for hardware implementation. We adopt mixed pipeline and parallel structure and shift operations to design a sufficient large and complex network without excessive hardware resource cost. The network with 256 full-connected neurons is built on a Digilent Atlys board equipped with a Xilinx Spartan-6 LX45 FPGA. Besides, a memory control block and USB control block are designed to accomplish the task of data communication between the network and the host PC. This paper also describes the mechanism of associative memory performed in the silicon neuronal network. The network is capable of retrieving stored patterns if the inputs contain enough information of them. The retrieving probability increases with the similarity between the input and the stored pattern increasing. Synchronization of neurons is observed when the successful stored pattern retrieval occurs.
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Affiliation(s)
- Jing Li
- Graduate School of Engineering, The University of Tokyo Tokyo, Japan
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VLSI circuits implementing computational models of neocortical circuits. J Neurosci Methods 2012; 210:93-109. [DOI: 10.1016/j.jneumeth.2012.01.019] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2011] [Revised: 01/27/2012] [Accepted: 01/31/2012] [Indexed: 11/20/2022]
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Abstract
Relay cells are prevalent throughout sensory systems and receive two types of inputs: driving and modulating. The driving input contains receptive field properties that must be transmitted while the modulating input alters the specifics of transmission. For example, the visual thalamus contains relay neurons that receive driving inputs from the retina that encode a visual image, and modulating inputs from reticular activating system and layer 6 of visual cortex that control what aspects of the image will be relayed back to visual cortex for perception. What gets relayed depends on several factors such as attentional demands and a subject's goals. In this paper, we analyze a biophysical based model of a relay cell and use systems theoretic tools to construct analytic bounds on how well the cell transmits a driving input as a function of the neuron's electrophysiological properties, the modulating input, and the driving signal parameters. We assume that the modulating input belongs to a class of sinusoidal signals and that the driving input is an irregular train of pulses with inter-pulse intervals obeying an exponential distribution. Our analysis applies to any [Formula: see text] order model as long as the neuron does not spike without a driving input pulse and exhibits a refractory period. Our bounds on relay reliability contain performance obtained through simulation of a second and third order model, and suggest, for instance, that if the frequency of the modulating input increases or the DC offset decreases, then relay increases. Our analysis also shows, for the first time, how the biophysical properties of the neuron (e.g. ion channel dynamics) define the oscillatory patterns needed in the modulating input for appropriately timed relay of sensory information. In our discussion, we describe how our bounds predict experimentally observed neural activity in the basal ganglia in (i) health, (ii) in Parkinson's disease (PD), and (iii) in PD during therapeutic deep brain stimulation. Our bounds also predict different rhythms that emerge in the lateral geniculate nucleus in the thalamus during different attentional states.
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Affiliation(s)
- Rahul Agarwal
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland, USA.
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