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Ankri L, Riccitelli S, Rivlin-Etzion M. A new role for excitation in the retinal direction-selective circuit. J Physiol 2024. [PMID: 39462912 DOI: 10.1113/jp286581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2024] [Accepted: 09/24/2024] [Indexed: 10/29/2024] Open
Abstract
A key feature of the receptive field of neurons in the visual system is their centre-surround antagonism, whereby the centre and the surround exhibit responses of opposite polarity. This organization is thought to enhance visual acuity, but whether and how such antagonism plays a role in more complex processing remains poorly understood. Here, we investigate the role of centre and surround receptive fields in retinal direction selectivity by exposing posterior-preferring On-Off direction-selective ganglion cells (pDSGCs) to adaptive light and recording their response to globally moving objects. We reveal that light adaptation leads to surround expansion in pDSGCs. The pDSGCs maintain their original directional tuning in the centre receptive field, but present the oppositely tuned response in their surround. Notably, although inhibition is the main substrate for retinal direction selectivity, we found that following light adaptation, both the centre- and surround-mediated responses originate from directionally tuned excitatory inputs. Multi-electrode array recordings show similar oppositely tuned responses in other DSGC subtypes. Together, these data attribute a new role for excitation in the direction-selective circuit. This excitation carries an antagonistic centre-surround property, possibly designed to sharpen the detection of motion direction in the retina. KEY POINTS: Receptive fields of direction-selective retinal ganglion cells expand asymmetrically following light adaptation. The increase in the surround receptive field generates a delayed spiking phase that is tuned to the null direction and is mediated by excitation. Following light adaptation, excitation rules the computation in the centre receptive field and is tuned to the preferred direction. GABAergic and glycinergic inputs modulate the null-tuned delayed response differentially. Null-tuned delayed spiking phases can be detected in all types of direction-selective retinal ganglion cells. Light adaptation exposes a hidden directional excitation in the circuit, which is tuned to opposite directions in the centre and surround receptive fields.
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Affiliation(s)
- Lea Ankri
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Serena Riccitelli
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel
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2
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Famiglietti EV. Mammalian Retinal Bipolar Cells: Morphological Identification and Systematic Classification in Rabbit Retina. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.09.19.613998. [PMID: 39345639 PMCID: PMC11429971 DOI: 10.1101/2024.09.19.613998] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/01/2024]
Abstract
Retinal bipolar cells (BCs) convey visual signals from photoreceptors to more than 50 types of rabbit retinal ganglion cells (Famiglietti, 2020). More than 40 years ago, 10-11 types of bipolar cell were recognized in rabbit and cat retinas (Famiglietti, 1981). Twenty years later 10 were identified in mouse, rat, and monkey (Gosh et al., 2004), while recent molecular genetic studies indicate that there are 15 types of bipolar cell in mouse retina (Shekhar et al., 2016). The present detailed study of more than 800 bipolar cells in ten Golgi-impregnated rabbit retinas indicates that there are 14-16 types of cone bipolar cell and one type of rod bipolar cell in rabbit retina. These have been carefully analyzed in terms of dendritic and axonal morphology, and axon terminal stratification with respect to fiducial starburst amacrine cells. In fortuitous proximity, several types of bipolar cell can be related to identified ganglion cells by stratification and by contacts suggestive of synaptic connection. These results are compared with other studies of rabbit bipolar cells. Homologies with bipolar cells of mouse and monkey are considered in functional terms.
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3
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Sigulinsky CL, Pfeiffer RL, Jones BW. Retinal Connectomics: A Review. Annu Rev Vis Sci 2024; 10:263-291. [PMID: 39292552 DOI: 10.1146/annurev-vision-102122-110414] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/20/2024]
Abstract
The retina is an ideal model for understanding the fundamental rules for how neural networks are constructed. The compact neural networks of the retina perform all of the initial processing of visual information before transmission to higher visual centers in the brain. The field of retinal connectomics uses high-resolution electron microscopy datasets to map the intricate organization of these networks and further our understanding of how these computations are performed by revealing the fundamental topologies and allowable networks behind retinal computations. In this article, we review some of the notable advances that retinal connectomics has provided in our understanding of the specific cells and the organization of their connectivities within the retina, as well as how these are shaped in development and break down in disease. Using these anatomical maps to inform modeling has been, and will continue to be, instrumental in understanding how the retina processes visual signals.
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Affiliation(s)
- Crystal L Sigulinsky
- Department of Ophthalmology and Visual Sciences, John Moran Eye Center, University of Utah, Salt Lake City, Utah, USA;
| | - Rebecca L Pfeiffer
- Department of Ophthalmology and Visual Sciences, John Moran Eye Center, University of Utah, Salt Lake City, Utah, USA;
| | - Bryan William Jones
- Department of Ophthalmology and Visual Sciences, John Moran Eye Center, University of Utah, Salt Lake City, Utah, USA;
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4
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Fu J, Pierzchlewicz PA, Willeke KF, Bashiri M, Muhammad T, Diamantaki M, Froudarakis E, Restivo K, Ponder K, Denfield GH, Sinz F, Tolias AS, Franke K. Heterogeneous orientation tuning in the primary visual cortex of mice diverges from Gabor-like receptive fields in primates. Cell Rep 2024; 43:114639. [PMID: 39167488 PMCID: PMC11463840 DOI: 10.1016/j.celrep.2024.114639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2022] [Revised: 06/19/2024] [Accepted: 07/31/2024] [Indexed: 08/23/2024] Open
Abstract
A key feature of neurons in the primary visual cortex (V1) of primates is their orientation selectivity. Recent studies using deep neural network models showed that the most exciting input (MEI) for mouse V1 neurons exhibit complex spatial structures that predict non-uniform orientation selectivity across the receptive field (RF), in contrast to the classical Gabor filter model. Using local patches of drifting gratings, we identified heterogeneous orientation tuning in mouse V1 that varied up to 90° across sub-regions of the RF. This heterogeneity correlated with deviations from optimal Gabor filters and was consistent across cortical layers and recording modalities (calcium vs. spikes). In contrast, model-synthesized MEIs for macaque V1 neurons were predominantly Gabor like, consistent with previous studies. These findings suggest that complex spatial feature selectivity emerges earlier in the visual pathway in mice than in primates. This may provide a faster, though less general, method of extracting task-relevant information.
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Affiliation(s)
- Jiakun Fu
- Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA; Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX 77030, USA
| | - Paweł A Pierzchlewicz
- Institute for Bioinformatics and Medical Informatics, Tübingen University, Tübingen, Germany; Georg-August University Göttingen, Göttingen, Germany
| | - Konstantin F Willeke
- Institute for Bioinformatics and Medical Informatics, Tübingen University, Tübingen, Germany; Georg-August University Göttingen, Göttingen, Germany
| | - Mohammad Bashiri
- Institute for Bioinformatics and Medical Informatics, Tübingen University, Tübingen, Germany; Georg-August University Göttingen, Göttingen, Germany
| | - Taliah Muhammad
- Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA; Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX 77030, USA
| | - Maria Diamantaki
- Institute of Molecular Biology & Biotechnology, Foundation of Research & Technology - Hellas, Heraklion, Crete, Greece; School of Medicine, University of Crete, Heraklion, Crete, Greece
| | - Emmanouil Froudarakis
- Institute of Molecular Biology & Biotechnology, Foundation of Research & Technology - Hellas, Heraklion, Crete, Greece; School of Medicine, University of Crete, Heraklion, Crete, Greece
| | - Kelli Restivo
- Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA; Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX 77030, USA
| | - Kayla Ponder
- Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA; Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX 77030, USA
| | - George H Denfield
- Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA; Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX 77030, USA
| | - Fabian Sinz
- Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA; Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX 77030, USA; Institute for Bioinformatics and Medical Informatics, Tübingen University, Tübingen, Germany; Georg-August University Göttingen, Göttingen, Germany
| | - Andreas S Tolias
- Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA; Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX 77030, USA; Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA 94303, USA; Stanford Bio-X, Stanford University, Stanford, CA 94305, USA; Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA 94305, USA; Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA.
| | - Katrin Franke
- Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA; Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX 77030, USA; Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA 94303, USA; Stanford Bio-X, Stanford University, Stanford, CA 94305, USA; Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA 94305, USA.
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5
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Baden T. The vertebrate retina: a window into the evolution of computation in the brain. Curr Opin Behav Sci 2024; 57:None. [PMID: 38899158 PMCID: PMC11183302 DOI: 10.1016/j.cobeha.2024.101391] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 03/14/2024] [Accepted: 03/24/2024] [Indexed: 06/21/2024]
Abstract
Animal brains are probably the most complex computational machines on our planet, and like everything in biology, they are the product of evolution. Advances in developmental and palaeobiology have been expanding our general understanding of how nervous systems can change at a molecular and structural level. However, how these changes translate into altered function - that is, into 'computation' - remains comparatively sparsely explored. What, concretely, does it mean for neuronal computation when neurons change their morphology and connectivity, when new neurons appear or old ones disappear, or when transmitter systems are slowly modified over many generations? And how does evolution use these many possible knobs and dials to constantly tune computation to give rise to the amazing diversity in animal behaviours we see today? Addressing these major gaps of understanding benefits from choosing a suitable model system. Here, I present the vertebrate retina as one perhaps unusually promising candidate. The retina is ancient and displays highly conserved core organisational principles across the entire vertebrate lineage, alongside a myriad of adjustments across extant species that were shaped by the history of their visual ecology. Moreover, the computational logic of the retina is readily interrogated experimentally, and our existing understanding of retinal circuits in a handful of species can serve as an anchor when exploring the visual circuit adaptations across the entire vertebrate tree of life, from fish deep in the aphotic zone of the oceans to eagles soaring high up in the sky.
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6
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Granato A, Phillips WA, Schulz JM, Suzuki M, Larkum ME. Dysfunctions of cellular context-sensitivity in neurodevelopmental learning disabilities. Neurosci Biobehav Rev 2024; 161:105688. [PMID: 38670298 DOI: 10.1016/j.neubiorev.2024.105688] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Revised: 04/17/2024] [Accepted: 04/21/2024] [Indexed: 04/28/2024]
Abstract
Pyramidal neurons have a pivotal role in the cognitive capabilities of neocortex. Though they have been predominantly modeled as integrate-and-fire point processors, many of them have another point of input integration in their apical dendrites that is central to mechanisms endowing them with the sensitivity to context that underlies basic cognitive capabilities. Here we review evidence implicating impairments of those mechanisms in three major neurodevelopmental disabilities, fragile X, Down syndrome, and fetal alcohol spectrum disorders. Multiple dysfunctions of the mechanisms by which pyramidal cells are sensitive to context are found to be implicated in all three syndromes. Further deciphering of these cellular mechanisms would lead to the understanding of and therapies for learning disabilities beyond any that are currently available.
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Affiliation(s)
- Alberto Granato
- Dept. of Veterinary Sciences. University of Turin, Grugliasco, Turin 10095, Italy.
| | - William A Phillips
- Psychology, Faculty of Natural Sciences, University of Stirling, Scotland FK9 4LA, UK
| | - Jan M Schulz
- Roche Pharma Research & Early Development, Neuroscience & Rare Diseases Discovery, Roche Innovation Center Basel, F. Hoffmann-La Roche Ltd, Grenzacherstrasse 124, Basel 4070, Switzerland
| | - Mototaka Suzuki
- Dept. of Cognitive and Systems Neuroscience, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam, Amsterdam 1098 XH, the Netherlands
| | - Matthew E Larkum
- Neurocure Center for Excellence, Charité Universitätsmedizin Berlin, Berlin 10117, Germany; Institute of Biology, Humboldt University Berlin, Berlin, Germany
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7
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Friedrichsen K, Hsiang JC, Lin CI, McCoy L, Valkova K, Kerschensteiner D, Morgan JL. Subcellular pathways through VGluT3-expressing mouse amacrine cells provide locally tuned object-motion-selective signals in the retina. Nat Commun 2024; 15:2965. [PMID: 38580652 PMCID: PMC10997783 DOI: 10.1038/s41467-024-46996-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Accepted: 03/15/2024] [Indexed: 04/07/2024] Open
Abstract
VGluT3-expressing mouse retinal amacrine cells (VG3s) respond to small-object motion and connect to multiple types of bipolar cells (inputs) and retinal ganglion cells (RGCs, outputs). Because these input and output connections are intermixed on the same dendrites, making sense of VG3 circuitry requires comparing the distribution of synapses across their arbors to the subcellular flow of signals. Here, we combine subcellular calcium imaging and electron microscopic connectomic reconstruction to analyze how VG3s integrate and transmit visual information. VG3s receive inputs from all nearby bipolar cell types but exhibit a strong preference for the fast type 3a bipolar cells. By comparing input distributions to VG3 dendrite responses, we show that VG3 dendrites have a short functional length constant that likely depends on inhibitory shunting. This model predicts that RGCs that extend dendrites into the middle layers of the inner plexiform encounter VG3 dendrites whose responses vary according to the local bipolar cell response type.
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Affiliation(s)
- Karl Friedrichsen
- Department of Ophthalmology and Visual Sciences, Washington University in St. Louis, St. Louis, MO, USA
- Department of Neuroscience, Washington University in St. Louis, St. Louis, MO, USA
- Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO, USA
- Graduate Program in Neuroscience, Washington University in St. Louis, St. Louis, USA
| | - Jen-Chun Hsiang
- Department of Ophthalmology and Visual Sciences, Washington University in St. Louis, St. Louis, MO, USA
- Department of Neuroscience, Washington University in St. Louis, St. Louis, MO, USA
- Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO, USA
- Graduate Program in Neuroscience, Washington University in St. Louis, St. Louis, USA
| | - Chin-I Lin
- Department of Ophthalmology and Visual Sciences, Washington University in St. Louis, St. Louis, MO, USA
- Department of Neuroscience, Washington University in St. Louis, St. Louis, MO, USA
- Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO, USA
- Graduate Program in Neuroscience, Washington University in St. Louis, St. Louis, USA
| | - Liam McCoy
- Department of Ophthalmology and Visual Sciences, Washington University in St. Louis, St. Louis, MO, USA
- Department of Neuroscience, Washington University in St. Louis, St. Louis, MO, USA
- Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO, USA
| | - Katia Valkova
- Department of Ophthalmology and Visual Sciences, Washington University in St. Louis, St. Louis, MO, USA
- Department of Neuroscience, Washington University in St. Louis, St. Louis, MO, USA
- Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO, USA
| | - Daniel Kerschensteiner
- Department of Ophthalmology and Visual Sciences, Washington University in St. Louis, St. Louis, MO, USA.
- Department of Neuroscience, Washington University in St. Louis, St. Louis, MO, USA.
- Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO, USA.
| | - Josh L Morgan
- Department of Ophthalmology and Visual Sciences, Washington University in St. Louis, St. Louis, MO, USA.
- Department of Neuroscience, Washington University in St. Louis, St. Louis, MO, USA.
- Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO, USA.
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8
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Roy S, Yao X, Rathinavelu J, Field GD. GABAergic Inhibition Controls Receptive Field Size, Sensitivity, and Contrast Preference of Direction Selective Retinal Ganglion Cells Near the Threshold of Vision. J Neurosci 2024; 44:e1979232023. [PMID: 38182419 PMCID: PMC10941243 DOI: 10.1523/jneurosci.1979-23.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Revised: 12/13/2023] [Accepted: 12/21/2023] [Indexed: 01/07/2024] Open
Abstract
Information about motion is encoded by direction-selective retinal ganglion cells (DSGCs). These cells reliably transmit this information across a broad range of light levels, spanning moonlight to sunlight. Previous work indicates that adaptation to low light levels causes heterogeneous changes to the direction tuning of ON-OFF (oo)DSGCs and suggests that superior-preferring ON-OFF DSGCs (s-DSGCs) are biased toward detecting stimuli rather than precisely signaling direction. Using a large-scale multielectrode array, we measured the absolute sensitivity of ooDSGCs and found that s-DSGCs are 10-fold more sensitive to dim flashes of light than other ooDSGCs. We measured their receptive field (RF) sizes and found that s-DSGCs also have larger receptive fields than other ooDSGCs; however, the size difference does not fully explain the sensitivity difference. Using a conditional knock-out of gap junctions and pharmacological manipulations, we demonstrate that GABA-mediated inhibition contributes to the difference in absolute sensitivity and receptive field size at low light levels, while the connexin36-mediated gap junction coupling plays a minor role. We further show that under scotopic conditions, ooDSGCs exhibit only an ON response, but pharmacologically removing GABA-mediated inhibition unmasks an OFF response. These results reveal that GABAergic inhibition controls and differentially modulates the responses of ooDSGCs under scotopic conditions.
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Affiliation(s)
- Suva Roy
- Department of Ophthalmology, Jules Stein Eye Institute, University of California, Los Angeles, California 90095
| | - Xiaoyang Yao
- Department of Neurobiology, Duke University School of Medicine, Durham, North Carolina 27710
| | - Jay Rathinavelu
- Department of Neurobiology, Duke University School of Medicine, Durham, North Carolina 27710
| | - Greg D Field
- Department of Ophthalmology, Jules Stein Eye Institute, University of California, Los Angeles, California 90095
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9
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Chander PR, Hanson L, Chundekkad P, Awatramani GB. Neural Circuits Underlying Multifeature Extraction in the Retina. J Neurosci 2024; 44:e0910232023. [PMID: 37957014 PMCID: PMC10919202 DOI: 10.1523/jneurosci.0910-23.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Revised: 08/31/2023] [Accepted: 09/13/2023] [Indexed: 11/21/2023] Open
Abstract
Classic ON-OFF direction-selective ganglion cells (DSGCs) that encode the four cardinal directions were recently shown to also be orientation-selective. To clarify the mechanisms underlying orientation selectivity, we employed a variety of electrophysiological, optogenetic, and gene knock-out strategies to test the relative contributions of glutamate, GABA, and acetylcholine (ACh) input that are known to drive DSGCs, in male and female mouse retinas. Extracellular spike recordings revealed that DSGCs respond preferentially to either vertical or horizontal bars, those that are perpendicular to their preferred-null motion axes. By contrast, the glutamate input to all four DSGC types measured using whole-cell patch-clamp techniques was found to be tuned along the vertical axis. Tuned glutamatergic excitation was heavily reliant on type 5A bipolar cells, which appear to be electrically coupled via connexin 36 containing gap junctions to the vertically oriented processes of wide-field amacrine cells. Vertically tuned inputs are transformed by the GABAergic/cholinergic "starburst" amacrine cells (SACs), which are critical components of the direction-selective circuit, into distinct patterns of inhibition and excitation. Feed-forward SAC inhibition appears to "veto" preferred orientation glutamate excitation in dorsal/ventral (but not nasal/temporal) coding DSGCs "flipping" their orientation tuning by 90° and accounts for the apparent mismatch between glutamate input tuning and the DSGC's spiking response. Together, these results reveal how two distinct synaptic motifs interact to generate complex feature selectivity, shedding light on the intricate circuitry that underlies visual processing in the retina.
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Affiliation(s)
| | - Laura Hanson
- Department of Biology, University of Victoria, Victoria, British Columbia V8W 4A4, Canada
| | - Pavitra Chundekkad
- Department of Biology, University of Victoria, Victoria, British Columbia V8W 4A4, Canada
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10
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Hsiang JC, Shen N, Soto F, Kerschensteiner D. Distributed feature representations of natural stimuli across parallel retinal pathways. Nat Commun 2024; 15:1920. [PMID: 38429280 PMCID: PMC10907388 DOI: 10.1038/s41467-024-46348-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Accepted: 02/22/2024] [Indexed: 03/03/2024] Open
Abstract
How sensory systems extract salient features from natural environments and organize them across neural pathways is unclear. Combining single-cell and population two-photon calcium imaging in mice, we discover that retinal ON bipolar cells (second-order neurons of the visual system) are divided into two blocks of four types. The two blocks distribute temporal and spatial information encoding, respectively. ON bipolar cell axons co-stratify within each block, but separate laminarly between them (upper block: diverse temporal, uniform spatial tuning; lower block: diverse spatial, uniform temporal tuning). ON bipolar cells extract temporal and spatial features similarly from artificial and naturalistic stimuli. In addition, they differ in sensitivity to coherent motion in naturalistic movies. Motion information is distributed across ON bipolar cells in the upper and the lower blocks, multiplexed with temporal and spatial contrast, independent features of natural scenes. Comparing the responses of different boutons within the same arbor, we find that axons of all ON bipolar cell types function as computational units. Thus, our results provide insights into the visual feature extraction from naturalistic stimuli and reveal how structural and functional organization cooperate to generate parallel ON pathways for temporal and spatial information in the mammalian retina.
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Affiliation(s)
- Jen-Chun Hsiang
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine, St. Louis, MO, 63110, USA
| | - Ning Shen
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine, St. Louis, MO, 63110, USA
| | - Florentina Soto
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine, St. Louis, MO, 63110, USA
| | - Daniel Kerschensteiner
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine, St. Louis, MO, 63110, USA.
- Department of Neuroscience, Washington University School of Medicine, St. Louis, MO, 63110, USA.
- Department of Biomedical Engineering, Washington University School of Medicine, St. Louis, MO, 63110, USA.
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11
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Baden T. Ancestral photoreceptor diversity as the basis of visual behaviour. Nat Ecol Evol 2024; 8:374-386. [PMID: 38253752 DOI: 10.1038/s41559-023-02291-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Accepted: 11/10/2023] [Indexed: 01/24/2024]
Abstract
Animal colour vision is based on comparing signals from different photoreceptors. It is generally assumed that processing different spectral types of photoreceptor mainly serves colour vision. Here I propose instead that photoreceptors are parallel feature channels that differentially support visual-motor programmes like motion vision behaviours, prey capture and predator evasion. Colour vision may have emerged as a secondary benefit of these circuits, which originally helped aquatic vertebrates to visually navigate and segment their underwater world. Specifically, I suggest that ancestral vertebrate vision was built around three main systems, including a high-resolution general purpose greyscale system based on ancestral red cones and rods to mediate visual body stabilization and navigation, a high-sensitivity specialized foreground system based on ancestral ultraviolet cones to mediate threat detection and prey capture, and a net-suppressive system based on ancestral green and blue cones for regulating red/rod and ultraviolet circuits. This ancestral strategy probably still underpins vision today, and different vertebrate lineages have since adapted their original photoreceptor circuits to suit their diverse visual ecologies.
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Affiliation(s)
- Tom Baden
- University of Sussex, Sussex Neuroscience, Sussex Center for Sensory Neuroscience and Computation, Brighton, UK.
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12
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Acarón Ledesma H, Ding J, Oosterboer S, Huang X, Chen Q, Wang S, Lin MZ, Wei W. Dendritic mGluR2 and perisomatic Kv3 signaling regulate dendritic computation of mouse starburst amacrine cells. Nat Commun 2024; 15:1819. [PMID: 38418467 PMCID: PMC10901804 DOI: 10.1038/s41467-024-46234-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Accepted: 02/20/2024] [Indexed: 03/01/2024] Open
Abstract
Dendritic mechanisms driving input-output transformation in starburst amacrine cells (SACs) are not fully understood. Here, we combine two-photon subcellular voltage and calcium imaging and electrophysiological recording to determine the computational architecture of mouse SAC dendrites. We found that the perisomatic region integrates motion signals over the entire dendritic field, providing a low-pass-filtered global depolarization to dendrites. Dendrites integrate local synaptic inputs with this global signal in a direction-selective manner. Coincidental local synaptic inputs and the global motion signal in the outward motion direction generate local suprathreshold calcium transients. Moreover, metabotropic glutamate receptor 2 (mGluR2) signaling in SACs modulates the initiation of calcium transients in dendrites but not at the soma. In contrast, voltage-gated potassium channel 3 (Kv3) dampens fast voltage transients at the soma. Together, complementary mGluR2 and Kv3 signaling in different subcellular regions leads to dendritic compartmentalization and direction selectivity, highlighting the importance of these mechanisms in dendritic computation.
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Affiliation(s)
- Héctor Acarón Ledesma
- Graduate Program in Biophysical Sciences, The University of Chicago, Chicago, IL, 60637, USA
- F.M. Kirby Neurobiology Center, Boston Children's Hospital, Harvard Medical School, Boston, MA, 02115, USA
| | - Jennifer Ding
- The Committee on Neurobiology Graduate Program, The University of Chicago, Chicago, IL, 60637, USA
- Department of Neurobiology, Harvard Medical School, Boston, MA, 02115, USA
| | - Swen Oosterboer
- The Committee on Neurobiology Graduate Program, The University of Chicago, Chicago, IL, 60637, USA
| | - Xiaolin Huang
- The Committee on Neurobiology Graduate Program, The University of Chicago, Chicago, IL, 60637, USA
- Division of Neurobiology, Department of Molecular and Cell Biology, Helen Wills Neuroscience Institute, University of California, Berkeley, CA, 94720, USA
| | - Qiang Chen
- The Committee on Computational Neuroscience Graduate Program, The University of Chicago, Chicago, IL, 60637, USA
- Department of Physiology & Biophysics, University of Washington, Seattle, WA, 98195, USA
| | - Sui Wang
- Department of Ophthalmology, Stanford University, Stanford, CA, 94305, USA
| | - Michael Z Lin
- Department of Neurobiology, Department of Bioengineering, Stanford University, Stanford, CA, 94305, USA
| | - Wei Wei
- Department of Neurobiology and the Neuroscience Institute, The University of Chicago, Chicago, IL, 60637, USA.
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13
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Li Y, Yu S, Jia X, Qiu X, He J. Defining morphologically and genetically distinct GABAergic/cholinergic amacrine cell subtypes in the vertebrate retina. PLoS Biol 2024; 22:e3002506. [PMID: 38363811 PMCID: PMC10914270 DOI: 10.1371/journal.pbio.3002506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2023] [Revised: 03/05/2024] [Accepted: 01/18/2024] [Indexed: 02/18/2024] Open
Abstract
In mammals, retinal direction selectivity originates from GABAergic/cholinergic amacrine cells (ACs) specifically expressing the sox2 gene. However, the cellular diversity of GABAergic/cholinergic ACs of other vertebrate species remains largely unexplored. Here, we identified 2 morphologically and genetically distinct GABAergic/cholinergic AC types in zebrafish, a previously undescribed bhlhe22+ type and a mammalian counterpart sox2+ type. Notably, while sole sox2 disruption removed sox2+ type, the codisruption of bhlhe22 and bhlhe23 was required to remove bhlhe22+ type. Also, both types significantly differed in dendritic arbors, lamination, and soma position. Furthermore, in vivo two-photon calcium imaging and the behavior assay suggested the direction selectivity of both AC types. Nevertheless, the 2 types showed preferential responses to moving bars of different sizes. Thus, our findings provide new cellular diversity and functional characteristics of GABAergic/cholinergic ACs in the vertebrate retina.
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Affiliation(s)
- Yan Li
- Institute of Neuroscience, State Key Laboratory of Neuroscience, Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Shuguang Yu
- Institute of Neuroscience, State Key Laboratory of Neuroscience, Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Xinling Jia
- Institute of Neuroscience, State Key Laboratory of Neuroscience, Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, China
| | - Xiaoying Qiu
- Institute of Neuroscience, State Key Laboratory of Neuroscience, Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, China
| | - Jie He
- Institute of Neuroscience, State Key Laboratory of Neuroscience, Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, China
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14
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Yoshimatsu T, Baden T. New twists in the evolution of retinal direction selectivity. PLoS Biol 2024; 22:e3002538. [PMID: 38422167 PMCID: PMC10903858 DOI: 10.1371/journal.pbio.3002538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2024] Open
Abstract
In mammals, starburst amacrine cells are centrally involved in motion vision and a new study in PLOS Biology, by Yan and colleagues finds that zebrafish have them, too. They coexist with a second pair of starburst-like neurons, but neither appears to be strongly motion selective.
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Affiliation(s)
- Takeshi Yoshimatsu
- Department of the Ophthalmology and Visual Sciences, Washington University in St. Louis School of Medicine, St. Louis, Missouri, United States of America
| | - Tom Baden
- Center for Sensory Neuroscience and Computation, Sussex Neuroscience, School of Life Sciences, University of Sussex, Sussex, United Kingdom
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15
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Park SJ, Lei W, Pisano J, Orpia A, Minehart J, Pottackal J, Hanke-Gogokhia C, Zapadka TE, Clarkson-Paredes C, Popratiloff A, Ross SE, Singer JH, Demb JB. Molecular identification of wide-field amacrine cells in mouse retina that encode stimulus orientation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.12.28.573580. [PMID: 38234775 PMCID: PMC10793454 DOI: 10.1101/2023.12.28.573580] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2024]
Abstract
Visual information processing is sculpted by a diverse group of inhibitory interneurons in the retina called amacrine cells. Yet, for most of the >60 amacrine cell types, molecular identities and specialized functional attributes remain elusive. Here, we developed an intersectional genetic strategy to target a group of wide-field amacrine cells (WACs) in mouse retina that co-express the transcription factor Bhlhe22 and the Kappa Opioid Receptor (KOR; B/K WACs). B/K WACs feature straight, unbranched dendrites spanning over 0.5 mm (∼15° visual angle) and produce non-spiking responses to either light increments or decrements. Two-photon dendritic population imaging reveals Ca 2+ signals tuned to the physical orientations of B/K WAC dendrites, signifying a robust structure-function alignment. B/K WACs establish divergent connections with multiple retinal neurons, including unexpected connections with non-orientation-tuned ganglion cells and bipolar cells. Our work sets the stage for future comprehensive investigations of the most enigmatic group of retinal neurons: WACs.
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16
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Gaynes JA, Budoff SA, Grybko MJ, Poleg-Polsky A. Heterogeneous presynaptic receptive fields contribute to directional tuning in starburst amacrine cells. eLife 2023; 12:RP90456. [PMID: 38149980 PMCID: PMC10752589 DOI: 10.7554/elife.90456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2023] Open
Abstract
The processing of visual information by retinal starburst amacrine cells (SACs) involves transforming excitatory input from bipolar cells (BCs) into directional calcium output. While previous studies have suggested that an asymmetry in the kinetic properties of BCs along the soma-dendritic axes of the postsynaptic cell could enhance directional tuning at the level of individual branches, it remains unclear whether biologically relevant presynaptic kinetics contribute to direction selectivity (DS) when visual stimulation engages the entire dendritic tree. To address this question, we built multicompartmental models of the bipolar-SAC circuit and trained them to boost directional tuning. We report that despite significant dendritic crosstalk and dissimilar directional preferences along the dendrites that occur during whole-cell stimulation, the rules that guide BC kinetics leading to optimal DS are similar to the single-dendrite condition. To correlate model predictions to empirical findings, we utilized two-photon glutamate imaging to study the dynamics of bipolar release onto ON- and OFF-starburst dendrites in the murine retina. We reveal diverse presynaptic dynamics in response to motion in both BC populations; algorithms trained on the experimental data suggested that the differences in the temporal release kinetics are likely to correspond to heterogeneous receptive field properties among the different BC types, including the spatial extent of the center and surround components. In addition, we demonstrate that circuit architecture composed of presynaptic units with experimentally recorded dynamics could enhance directional drive but not to levels that replicate empirical findings, suggesting other DS mechanisms are required to explain SAC function. Our study provides new insights into the complex mechanisms underlying DS in retinal processing and highlights the potential contribution of presynaptic kinetics to the computation of visual information by SACs.
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Affiliation(s)
- John A Gaynes
- Department of Physiology and Biophysics, University of Colorado School of MedicineAuroraUnited States
| | - Samuel A Budoff
- Department of Physiology and Biophysics, University of Colorado School of MedicineAuroraUnited States
| | - Michael J Grybko
- Department of Physiology and Biophysics, University of Colorado School of MedicineAuroraUnited States
| | - Alon Poleg-Polsky
- Department of Physiology and Biophysics, University of Colorado School of MedicineAuroraUnited States
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17
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Jo A, Deniz S, Cherian S, Xu J, Futagi D, DeVries SH, Zhu Y. Modular interneuron circuits control motion sensitivity in the mouse retina. Nat Commun 2023; 14:7746. [PMID: 38008788 PMCID: PMC10679153 DOI: 10.1038/s41467-023-43382-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Accepted: 11/08/2023] [Indexed: 11/28/2023] Open
Abstract
Neural computations arise from highly precise connections between specific types of neurons. Retinal ganglion cells (RGCs) with similar stratification patterns are positioned to receive similar inputs but often display different response properties. In this study, we used intersectional mouse genetics to achieve single-cell type labeling and identified an object motion sensitive (OMS) AC type, COMS-AC(counter-OMS AC). Optogenetic stimulation revealed that COMS-AC makes glycinergic synapses with the OMS-insensitive HD2p-RGC, while chemogenetic inactivation showed that COMS-AC provides inhibitory control to HD2p-RGC during local motion. This local inhibition, combined with the inhibitory drive from TH2-AC during global motion, explains the OMS-insensitive feature of HD2p-RGC. In contrast, COMS-AC fails to make synapses with W3(UHD)-RGC, allowing it to exhibit OMS under the control of VGlut3-AC and TH2-AC. These findings reveal modular interneuron circuits that endow structurally similar RGC types with different responses and present a mechanism for redundancy-reduction in the retina to expand coding capacity.
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Affiliation(s)
- Andrew Jo
- Departments of Ophthalmology and Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA
| | - Sercan Deniz
- Departments of Ophthalmology and Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA
| | - Suraj Cherian
- Departments of Ophthalmology and Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA
| | - Jian Xu
- Departments of Ophthalmology and Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA
| | - Daiki Futagi
- Departments of Ophthalmology and Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA
| | - Steven H DeVries
- Departments of Ophthalmology and Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA
| | - Yongling Zhu
- Departments of Ophthalmology and Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA.
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18
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Matsumoto A, Yonehara K. Emerging computational motifs: Lessons from the retina. Neurosci Res 2023; 196:11-22. [PMID: 37352934 DOI: 10.1016/j.neures.2023.06.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Revised: 06/03/2023] [Accepted: 06/08/2023] [Indexed: 06/25/2023]
Abstract
The retinal neuronal circuit is the first stage of visual processing in the central nervous system. The efforts of scientists over the last few decades indicate that the retina is not merely an array of photosensitive cells, but also a processor that performs various computations. Within a thickness of only ∼200 µm, the retina consists of diverse forms of neuronal circuits, each of which encodes different visual features. Since the discovery of direction-selective cells by Horace Barlow and Richard Hill, the mechanisms that generate direction selectivity in the retina have remained a fascinating research topic. This review provides an overview of recent advances in our understanding of direction-selectivity circuits. Beyond the conventional wisdom of direction selectivity, emerging findings indicate that the retina utilizes complicated and sophisticated mechanisms in which excitatory and inhibitory pathways are involved in the efficient encoding of motion information. As will become evident, the discovery of computational motifs in the retina facilitates an understanding of how sensory systems establish feature selectivity.
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Affiliation(s)
- Akihiro Matsumoto
- Danish Research Institute of Translational Neuroscience - DANDRITE, Nordic-EMBL Partnership for Molecular Medicine, Department of Biomedicine, Aarhus University, Aarhus, Denmark; Department of Gene Function and Phenomics, National Institute of Genetics, Mishima, Japan; Department of Genetics, The Graduate University for Advanced Studies (SOKENDAI), Mishima, Japan.
| | - Keisuke Yonehara
- Danish Research Institute of Translational Neuroscience - DANDRITE, Nordic-EMBL Partnership for Molecular Medicine, Department of Biomedicine, Aarhus University, Aarhus, Denmark; Department of Gene Function and Phenomics, National Institute of Genetics, Mishima, Japan; Department of Genetics, The Graduate University for Advanced Studies (SOKENDAI), Mishima, Japan
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19
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Chen J, Gish CM, Fransen JW, Salazar-Gatzimas E, Clark DA, Borghuis BG. Direct comparison reveals algorithmic similarities in fly and mouse visual motion detection. iScience 2023; 26:107928. [PMID: 37810236 PMCID: PMC10550730 DOI: 10.1016/j.isci.2023.107928] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 08/07/2023] [Accepted: 09/12/2023] [Indexed: 10/10/2023] Open
Abstract
Evolution has equipped vertebrates and invertebrates with neural circuits that selectively encode visual motion. While similarities in the computations performed by these circuits in mouse and fruit fly have been noted, direct experimental comparisons have been lacking. Because molecular mechanisms and neuronal morphology in the two species are distinct, we directly compared motion encoding in these two species at the algorithmic level, using matched stimuli and focusing on a pair of analogous neurons, the mouse ON starburst amacrine cell (ON SAC) and Drosophila T4 neurons. We find that the cells share similar spatiotemporal receptive field structures, sensitivity to spatiotemporal correlations, and tuning to sinusoidal drifting gratings, but differ in their responses to apparent motion stimuli. Both neuron types showed a response to summed sinusoids that deviates from models for motion processing in these cells, underscoring the similarities in their processing and identifying response features that remain to be explained.
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Affiliation(s)
- Juyue Chen
- Interdepartmental Neurosciences Program, Yale University, New Haven, CT 06511, USA
| | - Caitlin M Gish
- Department of Physics, Yale University, New Haven, CT 06511, USA
| | - James W Fransen
- Department of Anatomical Sciences and Neurobiology, University of Louisville, Louisville, KY 40202, USA
| | | | - Damon A Clark
- Interdepartmental Neurosciences Program, Yale University, New Haven, CT 06511, USA
- Department of Physics, Yale University, New Haven, CT 06511, USA
- Department of Molecular, Cellular, Developmental Biology, Yale University, New Haven, CT 06511, USA
- Department of Neuroscience, Yale University, New Haven, CT 06511, USA
| | - Bart G Borghuis
- Department of Anatomical Sciences and Neurobiology, University of Louisville, Louisville, KY 40202, USA
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20
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Gaynes JA, Budoff SA, Grybko MJ, Poleg-Polsky A. Heterogeneous presynaptic receptive fields contribute to directional tuning in starburst amacrine cells. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.08.02.551732. [PMID: 37577661 PMCID: PMC10418172 DOI: 10.1101/2023.08.02.551732] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/15/2023]
Abstract
The processing of visual information by retinal starburst amacrine cells (SACs) involves transforming excitatory input from bipolar cells (BCs) into directional calcium output. While previous studies have suggested that an asymmetry in the kinetic properties of bipolar cells along the soma-dendritic axes of the postsynaptic cell could enhance directional tuning at the level of individual branches, it remains unclear whether biologically relevant presynaptic kinetics contribute to direction selectivity when visual stimulation engages the entire dendritic tree. To address this question, we built multicompartmental models of the bipolar-SAC circuit and trained them to boost directional tuning. We report that despite significant dendritic crosstalk and dissimilar directional preferences along the dendrites that occur during whole-cell stimulation, the rules that guide BC kinetics leading to optimal directional selectivity are similar to the single-dendrite condition. To correlate model predictions to empirical findings, we utilized two-photon glutamate imaging to study the dynamics of bipolar release onto ON- and OFF-starburst dendrites in the murine retina. We reveal diverse presynaptic dynamics in response to motion in both BC populations; algorithms trained on the experimental data suggested that the differences in the temporal release kinetics are likely to correspond to heterogeneous receptive field (RF) properties among the different BC types, including the spatial extent of the center and surround components. In addition, we demonstrate that circuit architecture composed of presynaptic units with experimentally recorded dynamics could enhance directional drive but not to levels that replicate empirical findings, suggesting other DS mechanisms are required to explain SAC function. Our study provides new insights into the complex mechanisms underlying direction selectivity in retinal processing and highlights the potential contribution of presynaptic kinetics to the computation of visual information by starburst amacrine cells.
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Affiliation(s)
- John A. Gaynes
- Department of Physiology and Biophysics, University of Colorado School of Medicine, Aurora, CO 80045, USA
| | - Samuel A. Budoff
- Department of Physiology and Biophysics, University of Colorado School of Medicine, Aurora, CO 80045, USA
| | - Michael J. Grybko
- Department of Physiology and Biophysics, University of Colorado School of Medicine, Aurora, CO 80045, USA
| | - Alon Poleg-Polsky
- Department of Physiology and Biophysics, University of Colorado School of Medicine, Aurora, CO 80045, USA
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21
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Jo A, Deniz S, Xu J, Duvoisin RM, DeVries SH, Zhu Y. A sign-inverted receptive field of inhibitory interneurons provides a pathway for ON-OFF interactions in the retina. Nat Commun 2023; 14:5937. [PMID: 37741839 PMCID: PMC10517963 DOI: 10.1038/s41467-023-41638-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Accepted: 09/11/2023] [Indexed: 09/25/2023] Open
Abstract
A fundamental organizing plan of the retina is that visual information is divided into ON and OFF streams that are processed in separate layers. This functional dichotomy originates in the ON and OFF bipolar cells, which then make excitatory glutamatergic synapses onto amacrine and ganglion cells in the inner plexiform layer. We have identified an amacrine cell (AC), the sign-inverting (SI) AC, that challenges this fundamental plan. The glycinergic, ON-stratifying SI-AC has OFF light responses. In opposition to the classical wiring diagrams, it receives inhibitory inputs from glutamatergic ON bipolar cells at mGluR8 synapses, and excitatory inputs from an OFF wide-field AC at electrical synapses. This "inhibitory ON center - excitatory OFF surround" receptive-field of the SI-AC allows it to use monostratified dendrites to conduct crossover inhibition and push-pull activation to enhance light detection by ACs and RGCs in the dark and feature discrimination in the light.
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Affiliation(s)
- Andrew Jo
- Departments of Ophthalmology and Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA
| | - Sercan Deniz
- Departments of Ophthalmology and Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA
| | - Jian Xu
- Departments of Ophthalmology and Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA
| | - Robert M Duvoisin
- Department of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, OR, 97239, USA
| | - Steven H DeVries
- Departments of Ophthalmology and Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA.
| | - Yongling Zhu
- Departments of Ophthalmology and Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA.
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22
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Wang B, Zhang Y. Asymmetric connections with starburst amacrine cells underlie the upward motion selectivity of J-type retinal ganglion cells. PLoS Biol 2023; 21:e3002301. [PMID: 37721959 PMCID: PMC10538761 DOI: 10.1371/journal.pbio.3002301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Revised: 09/28/2023] [Accepted: 08/17/2023] [Indexed: 09/20/2023] Open
Abstract
Motion is an important aspect of visual information. The directions of visual motion are encoded in the retina by direction-selective ganglion cells (DSGCs). ON-OFF DSGCs and ON DSGCs co-stratify with starburst amacrine cells (SACs) in the inner plexiform layer and depend on SACs for their direction selectivity. J-type retinal ganglion cells (J-RGCs), a type of OFF DSGCs in the mouse retina, on the other hand, do not co-stratify with SACs, and how direction selectivity in J-RGCs emerges has not been understood. Here, we report that both the excitatory and inhibitory synaptic inputs to J-RGCs are direction-selective (DS), with the inhibitory inputs playing a more important role for direction selectivity. The DS inhibitory inputs come from SACs, and the functional connections between J-RGCs and SACs are spatially asymmetric. Thus, J-RGCs and SACs form functionally important synaptic contacts even though their dendritic arbors show little overlap. These findings underscore the need to look beyond the neurons' stratification patterns in retinal circuit studies. Our results also highlight the critical role of SACs for retinal direction selectivity.
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Affiliation(s)
- Bo Wang
- Institute of Neuroscience, Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, China
| | - Yifeng Zhang
- Institute of Neuroscience, Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, China
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23
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Ichinose T, Hellmer CB, Bohl JM. Presynaptic depolarization differentially regulates dual neurotransmitter release from starburst amacrine cells in the mouse retina. FRONTIERS IN OPHTHALMOLOGY 2023; 3:1225824. [PMID: 38444728 PMCID: PMC10914334 DOI: 10.3389/fopht.2023.1225824] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 03/07/2024]
Abstract
The retina is comprised of diverse neural networks, signaling from photoreceptors to ganglion cells to encode images. The synaptic connections between these retinal neurons are crucial points for information transfer; however, the input-output relations of many synapses are understudied. Starburst amacrine cells in the retina are known to contribute to retinal motion detection circuits, providing a unique window for understanding neural computations. We examined the dual transmitter release of GABA and acetylcholine from starburst amacrine cells by optogenetic activation of these cells, and conducted patch clamp recordings from postsynaptic ganglion cells to record excitatory and inhibitory postsynaptic currents (EPSCs and IPSCs). As starburst amacrine cells exhibit distinct kinetics in response to objects moving in a preferred or null direction, we mimicked their depolarization kinetics using optogenetic stimuli by varying slopes of the rising phase. The amplitudes of EPSCs and IPSCs in postsynaptic ganglion cells were reduced as the stimulus rising speed was prolonged. However, the sensitivity of postsynaptic currents to the stimulus slope differed. EPSC amplitudes were consistently reduced as the steepness of the rising phase fell. By contrast, IPSCs were less sensitive to the slope of the stimulus rise phase and maintained their amplitudes until the slope became shallow. These results indicate that distinct synaptic release mechanisms contribute to acetylcholine and GABA release from starburst amacrine cells, which could contribute to the ganglion cells' direction selectivity.
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Affiliation(s)
- Tomomi Ichinose
- Department of Ophthalmology, Visual and Anatomical Sciences, Wayne State University School of Medicine, Detroit, MI, United States
| | | | - Jeremy M. Bohl
- Department of Ophthalmology, Visual and Anatomical Sciences, Wayne State University School of Medicine, Detroit, MI, United States
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24
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Peng YR. Cell-type specification in the retina: Recent discoveries from transcriptomic approaches. Curr Opin Neurobiol 2023; 81:102752. [PMID: 37499619 DOI: 10.1016/j.conb.2023.102752] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 06/26/2023] [Accepted: 06/29/2023] [Indexed: 07/29/2023]
Abstract
Understanding the formation of the complex nervous system hinges on decoding the mechanism that specifies a vast array of neuronal types, each endowed with a unique morphology, physiology, and connectivity. As a pivotal step towards addressing this problem, seminal work has been devoted to characterizing distinct neuronal types. In recent years, high-throughput, single-cell transcriptomic methods have enabled a rapid inventory of cell types in various regions of the nervous system, with the retina exhibiting complete molecular characterization across many vertebrate species. This invaluable resource has furnished a fresh perspective for investigating the molecular principles of cell-type specification, thereby advancing our understanding of retinal development. Accordingly, this review focuses on the most recent transcriptomic characterizations of retinal cells, with a particular focus on amacrine cells and retinal ganglion cells. These investigations have unearthed new insights into their cell-type specification.
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Affiliation(s)
- Yi-Rong Peng
- Department of Ophthalmology and Stein Eye Institute, UCLA David Geffen School of Medicine, Los Angeles, CA 90095, USA.
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25
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Duan W, Zhang Y, Zhang X, Yang J, Shan H, Liu L, Wei H. A Visual Pathway into Central Complex for High-Frequency Motion-Defined Bars in Drosophila. J Neurosci 2023; 43:4821-4836. [PMID: 37290936 PMCID: PMC10312062 DOI: 10.1523/jneurosci.0128-23.2023] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2023] [Revised: 05/31/2023] [Accepted: 06/02/2023] [Indexed: 06/10/2023] Open
Abstract
Relative motion breaks a camouflaged target from a same-textured background, thus eliciting discrimination of a motion-defined object. Ring (R) neurons are critical components in the Drosophila central complex, which has been implicated in multiple visually guided behaviors. Using two-photon calcium imaging with female flies, we demonstrated that a specific population of R neurons that innervate the superior domain of bulb neuropil, termed superior R neurons, encoded a motion-defined bar with high spatial frequency contents. Upstream superior tuberculo-bulbar (TuBu) neurons transmitted visual signals by releasing acetylcholine within synapses connected with superior R neurons. Blocking TuBu or R neurons impaired tracking performance of the bar, which reveals their importance in motion-defined feature encoding. Additionally, the presentation of a low spatial frequency luminance-defined bar evoked consistent excitation in R neurons of the superior bulb, whereas either excited or inhibited responses were evoked in the inferior bulb. The distinct properties of the responses to the two bar stimuli indicate there is a functional division between the bulb subdomains. Moreover, physiological and behavioral tests with restricted lines suggest that R4d neurons play a vital role in tracking motion-defined bars. We conclude that the central complex receives the motion-defined features via a visual pathway from superior TuBu to R neurons and might encode different visual features via distinct response patterns at the population level, thereby driving visually guided behaviors.SIGNIFICANCE STATEMENT Animals could discriminate a motion-defined object that is indistinguishable with a same-textured background until it moves, but little is known about the underlying neural mechanisms. In this study, we identified that R neurons and their upstream partners, TuBu neurons, innervating the superior bulb of Drosophila central brain are involved in the discrimination of high-frequency motion-defined bars. Our study provides new evidence that R neurons receive multiple visual inputs from distinct upstream neurons, indicating a population coding mechanism for the fly central brain to discriminate diverse visual features. These results build progress in unraveling neural substrates for visually guided behaviors.
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Affiliation(s)
- Wenlan Duan
- State Key Laboratory of Brain and Cognitive Science, Chinese Academy of Sciences Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China
- College of Life Sciences, University of the Chinese Academy of Sciences, Beijing 100039, China
| | - Yihao Zhang
- State Key Laboratory of Brain and Cognitive Science, Chinese Academy of Sciences Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China
- College of Life Sciences, University of the Chinese Academy of Sciences, Beijing 100039, China
| | - Xin Zhang
- State Key Laboratory of Brain and Cognitive Science, Chinese Academy of Sciences Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China
- College of Life Sciences, University of the Chinese Academy of Sciences, Beijing 100039, China
| | - Jihua Yang
- State Key Laboratory of Brain and Cognitive Science, Chinese Academy of Sciences Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China
- College of Life Sciences, University of the Chinese Academy of Sciences, Beijing 100039, China
| | - Heying Shan
- State Key Laboratory of Brain and Cognitive Science, Chinese Academy of Sciences Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China
| | - Li Liu
- State Key Laboratory of Brain and Cognitive Science, Chinese Academy of Sciences Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China
- College of Life Sciences, University of the Chinese Academy of Sciences, Beijing 100039, China
- Chinese Academy of Sciences Key Laboratory of Mental Health, Beijing 100101, China
| | - Hongying Wei
- State Key Laboratory of Brain and Cognitive Science, Chinese Academy of Sciences Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China
- College of Life Sciences, University of the Chinese Academy of Sciences, Beijing 100039, China
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26
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Maruyama T, Ishii T, Kaneda M. Starburst amacrine cells form gap junctions in the early postnatal stage of the mouse retina. Front Cell Neurosci 2023; 17:1173579. [PMID: 37293630 PMCID: PMC10244514 DOI: 10.3389/fncel.2023.1173579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Accepted: 05/03/2023] [Indexed: 06/10/2023] Open
Abstract
Although gap junctional coupling in the developing retina is important for the maturation of neuronal networks, its role in the development of individual neurons remains unclear. Therefore, we herein investigated whether gap junctional coupling by starburst amacrine cells (SACs), a key neuron for the formation of direction selectivity, occurs during the developmental stage in the mouse retina. Neurobiotin-injected SACs coupled with many neighboring cells before eye-opening. The majority of tracer-coupled cells were retinal ganglion cells, and tracer coupling was not detected between SACs. The number of tracer-coupled cells significantly decreased after eye-opening and mostly disappeared by postnatal day 28 (P28). Membrane capacitance (Cm), an indicator of the formation of electrical coupling with gap junctions, was larger in SACs before than after eye-opening. The application of meclofenamic acid, a gap junction blocker, reduced the Cm of SACs. Gap junctional coupling by SACs was regulated by dopamine D1 receptors before eye-opening. In contrast, the reduction in gap junctional coupling after eye-opening was not affected by visual experience. At the mRNA level, 4 subtypes of connexins (23, 36, 43, and 45) were detected in SACs before eye-opening. Connexin 43 expression levels significantly decreased after eye-opening. These results indicate that gap junctional coupling by SACs occurs during the developmental period and suggest that the elimination of gap junctions proceeds with the innate system.
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Wu J, Kim YJ, Dacey DM, Troy JB, Smith RG. Two mechanisms for direction selectivity in a model of the primate starburst amacrine cell. Vis Neurosci 2023; 40:E003. [PMID: 37218623 PMCID: PMC10207453 DOI: 10.1017/s0952523823000019] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Revised: 04/25/2023] [Accepted: 04/25/2023] [Indexed: 05/24/2023]
Abstract
In a recent study, visual signals were recorded for the first time in starburst amacrine cells of the macaque retina, and, as for mouse and rabbit, a directional bias observed in calcium signals was recorded from near the dendritic tips. Stimulus motion from the soma toward the tip generated a larger calcium signal than motion from the tip toward the soma. Two mechanisms affecting the spatiotemporal summation of excitatory postsynaptic currents have been proposed to contribute to directional signaling at the dendritic tips of starbursts: (1) a "morphological" mechanism in which electrotonic propagation of excitatory synaptic currents along a dendrite sums bipolar cell inputs at the dendritic tip preferentially for stimulus motion in the centrifugal direction; (2) a "space-time" mechanism that relies on differences in the time-courses of proximal and distal bipolar cell inputs to favor centrifugal stimulus motion. To explore the contributions of these two mechanisms in the primate, we developed a realistic computational model based on connectomic reconstruction of a macaque starburst cell and the distribution of its synaptic inputs from sustained and transient bipolar cell types. Our model suggests that both mechanisms can initiate direction selectivity in starburst dendrites, but their contributions differ depending on the spatiotemporal properties of the stimulus. Specifically, the morphological mechanism dominates when small visual objects are moving at high velocities, and the space-time mechanism contributes most for large visual objects moving at low velocities.
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Affiliation(s)
- Jiajia Wu
- Department of Biomedical Engineering, Northwestern University, Evanston, IL, USA
| | - Yeon Jin Kim
- Department of Biological Structure, Washington National Primate Research Center, University of Washington, Seattle, WA, USA
| | - Dennis M. Dacey
- Department of Biological Structure, Washington National Primate Research Center, University of Washington, Seattle, WA, USA
| | - John B. Troy
- Department of Biomedical Engineering, Northwestern University, Evanston, IL, USA
| | - Robert G. Smith
- Department of Neuroscience, University of Pennsylvania, Philadelphia, PA, USA
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28
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Kline AM, Aponte DA, Kato HK. Distinct nonlinear spectrotemporal integration in primary and secondary auditory cortices. Sci Rep 2023; 13:7658. [PMID: 37169827 PMCID: PMC10175507 DOI: 10.1038/s41598-023-34731-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Accepted: 05/06/2023] [Indexed: 05/13/2023] Open
Abstract
Animals sense sounds through hierarchical neural pathways that ultimately reach higher-order cortices to extract complex acoustic features, such as vocalizations. Elucidating how spectrotemporal integration varies along the hierarchy from primary to higher-order auditory cortices is a crucial step in understanding this elaborate sensory computation. Here we used two-photon calcium imaging and two-tone stimuli with various frequency-timing combinations to compare spectrotemporal integration between primary (A1) and secondary (A2) auditory cortices in mice. Individual neurons showed mixed supralinear and sublinear integration in a frequency-timing combination-specific manner, and we found unique integration patterns in these two areas. Temporally asymmetric spectrotemporal integration in A1 neurons suggested their roles in discriminating frequency-modulated sweep directions. In contrast, temporally symmetric and coincidence-preferring integration in A2 neurons made them ideal spectral integrators of concurrent multifrequency sounds. Moreover, the ensemble neural activity in A2 was sensitive to two-tone timings, and coincident two-tones evoked distinct ensemble activity patterns from the linear sum of component tones. Together, these results demonstrate distinct roles of A1 and A2 in encoding complex acoustic features, potentially suggesting parallel rather than sequential information extraction between these regions.
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Affiliation(s)
- Amber M Kline
- Department of Psychiatry, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
- Neuroscience Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
| | - Destinee A Aponte
- Department of Psychiatry, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
- Neuroscience Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
| | - Hiroyuki K Kato
- Department of Psychiatry, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA.
- Neuroscience Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA.
- Carolina Institute for Developmental Disabilities, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA.
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Zhang Q, Yang Y, Cao KJ, Chen W, Paidi S, Xia CH, Kramer RH, Gong X, Ji N. Retinal microvascular and neuronal pathologies probed in vivo by adaptive optical two-photon fluorescence microscopy. eLife 2023; 12:84853. [PMID: 37039777 PMCID: PMC10089658 DOI: 10.7554/elife.84853] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Accepted: 03/19/2023] [Indexed: 04/12/2023] Open
Abstract
The retina, behind the transparent optics of the eye, is the only neural tissue whose physiology and pathology can be non-invasively probed by optical microscopy. The aberrations intrinsic to the mouse eye, however, prevent high-resolution investigation of retinal structure and function in vivo. Optimizing the design of a two-photon fluorescence microscope (2PFM) and sample preparation procedure, we found that adaptive optics (AO), by measuring and correcting ocular aberrations, is essential for resolving putative synaptic structures and achieving three-dimensional cellular resolution in the mouse retina in vivo. Applying AO-2PFM to longitudinal retinal imaging in transgenic models of retinal pathology, we characterized microvascular lesions with sub-capillary details in a proliferative vascular retinopathy model, and found Lidocaine to effectively suppress retinal ganglion cell hyperactivity in a retinal degeneration model. Tracking structural and functional changes at high-resolution longitudinally, AO-2PFM enables microscopic investigations of retinal pathology and pharmacology for disease diagnosis and treatment in vivo.
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Affiliation(s)
- Qinrong Zhang
- Department of Physics, University of California, Berkeley, United States
- Department of Molecular and Cell Biology, University of California, Berkeley, United States
| | - Yuhan Yang
- Department of Physics, University of California, Berkeley, United States
| | - Kevin J Cao
- Department of Molecular and Cell Biology, University of California, Berkeley, United States
- Helen Wills Neuroscience Institute, University of California, Berkeley, United States
| | - Wei Chen
- Department of Physics, University of California, Berkeley, United States
- Department of Molecular and Cell Biology, University of California, Berkeley, United States
| | - Santosh Paidi
- School of Optometry, University of California, Berkeley, United States
| | - Chun-Hong Xia
- School of Optometry, University of California, Berkeley, United States
- Vision Science Program, University of California, Berkeley, United States
| | - Richard H Kramer
- Department of Molecular and Cell Biology, University of California, Berkeley, United States
- Helen Wills Neuroscience Institute, University of California, Berkeley, United States
- Vision Science Program, University of California, Berkeley, United States
| | - Xiaohua Gong
- School of Optometry, University of California, Berkeley, United States
- Vision Science Program, University of California, Berkeley, United States
| | - Na Ji
- Department of Physics, University of California, Berkeley, United States
- Department of Molecular and Cell Biology, University of California, Berkeley, United States
- Helen Wills Neuroscience Institute, University of California, Berkeley, United States
- Vision Science Program, University of California, Berkeley, United States
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, United States
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Sánchez-Sáez X, Ortuño-Lizarán I, Sánchez-Castillo C, Lax P, Cuenca N. Starburst amacrine cells, involved in visual motion perception, loose their synaptic input from dopaminergic amacrine cells and degenerate in Parkinson's disease patients. Transl Neurodegener 2023; 12:17. [PMID: 37013599 PMCID: PMC10071607 DOI: 10.1186/s40035-023-00348-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Accepted: 03/10/2023] [Indexed: 04/05/2023] Open
Abstract
BACKGROUND The main clinical symptoms characteristic of Parkinson's disease (PD) are bradykinesia, tremor, and other motor deficits. However, non-motor symptoms, such as visual disturbances, can be identified at early stages of the disease. One of these symptoms is the impairment of visual motion perception. Hence, we sought to determine if the starburst amacrine cells, which are the main cellular type involved in motion direction selectivity, are degenerated in PD and if the dopaminergic system is related to this degeneration. METHODS Human eyes from control (n = 10) and PD (n = 9) donors were available for this study. Using immunohistochemistry and confocal microscopy, we quantified starburst amacrine cell density (choline acetyltransferase [ChAT]-positive cells) and the relationship between these cells and dopaminergic amacrine cells (tyrosine hydroxylase-positive cells and vesicular monoamine transporter-2-positive presynapses) in cross-sections and wholemount retinas. RESULTS First, we found two different ChAT amacrine populations in the human retina that presented different ChAT immunoreactivity intensity and different expression of calcium-binding proteins. Both populations are affected in PD and their density is reduced compared to controls. Also, we report, for the first time, synaptic contacts between dopaminergic amacrine cells and ChAT-positive cells in the human retina. We found that, in PD retinas, there is a reduction of the dopaminergic synaptic contacts into ChAT cells. CONCLUSIONS Taken together, this work indicates degeneration of starburst amacrine cells in PD related to dopaminergic degeneration and that dopaminergic amacrine cells could modulate the function of starburst amacrine cells. Since motion perception circuitries are affected in PD, their assessment using visual tests could provide new insights into the diagnosis of PD.
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Grants
- FEDER-PID 2019-106230RB-I00 Ministerio de Ciencia e Innovación
- FEDER-PID 2019-106230RB-I00 Ministerio de Ciencia e Innovación
- FPU16/04114 Ministerio de Universidades
- RETICS-FEDER RD16/0008/0016 Instituto de Salud Carlos III
- IDIFEDER/2017/064 Conselleria de Innovación, Universidades, Ciencia y Sociedad Digital, Generalitat Valenciana
- PROMETEO/2021/024 Conselleria de Innovación, Universidades, Ciencia y Sociedad Digital, Generalitat Valenciana
- PROMETEO/2021/024 Conselleria de Innovación, Universidades, Ciencia y Sociedad Digital, Generalitat Valenciana
- APOSTD/2020/245 Conselleria de Innovación, Universidades, Ciencia y Sociedad Digital, Generalitat Valenciana
- 2019/00286/001 Es Retina Asturias
- 2019/00286/001 Es Retina Asturias
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Affiliation(s)
- Xavier Sánchez-Sáez
- Department of Physiology, Genetics and Microbiology, University of Alicante, San Vicente del Raspeig, Spain
| | - Isabel Ortuño-Lizarán
- Department of Physiology, Genetics and Microbiology, University of Alicante, San Vicente del Raspeig, Spain
| | - Carla Sánchez-Castillo
- Department of Physiology, Genetics and Microbiology, University of Alicante, San Vicente del Raspeig, Spain
| | - Pedro Lax
- Department of Physiology, Genetics and Microbiology, University of Alicante, San Vicente del Raspeig, Spain
- Alicante Institute for Health and Biomedical Research (ISABIAL), Alicante, Spain
| | - Nicolás Cuenca
- Department of Physiology, Genetics and Microbiology, University of Alicante, San Vicente del Raspeig, Spain.
- Alicante Institute for Health and Biomedical Research (ISABIAL), Alicante, Spain.
- Ramón Margalef Institute, University of Alicante, San Vicente del Raspeig, Spain.
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31
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Gao S, Zhou M, Wang Z, Sugiyama D, Cheng J, Wang J, Todo Y. Fully Complex-Valued Dendritic Neuron Model. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2023; 34:2105-2118. [PMID: 34487498 DOI: 10.1109/tnnls.2021.3105901] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
A single dendritic neuron model (DNM) that owns the nonlinear information processing ability of dendrites has been widely used for classification and prediction. Complex-valued neural networks that consist of a number of multiple/deep-layer McCulloch-Pitts neurons have achieved great successes so far since neural computing was utilized for signal processing. Yet no complex value representations appear in single neuron architectures. In this article, we first extend DNM from a real-value domain to a complex-valued one. Performance of complex-valued DNM (CDNM) is evaluated through a complex XOR problem, a non-minimum phase equalization problem, and a real-world wind prediction task. Also, a comparative analysis on a set of elementary transcendental functions as an activation function is implemented and preparatory experiments are carried out for determining hyperparameters. The experimental results indicate that the proposed CDNM significantly outperforms real-valued DNM, complex-valued multi-layer perceptron, and other complex-valued neuron models.
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32
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Mu S, Turner NL, Silversmith WM, Jordan CS, Kemnitz N, Sorek M, David C, Jones DL, Bland D, Moore M, Sterling AR, Seung HS. Special nuclear layer contacts between starburst amacrine cells in the mouse retina. FRONTIERS IN OPHTHALMOLOGY 2023; 3:1129463. [PMID: 38983098 PMCID: PMC11182129 DOI: 10.3389/fopht.2023.1129463] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Accepted: 03/07/2023] [Indexed: 07/11/2024]
Abstract
Starburst amacrine cells are a prominent neuron type in the mammalian retina that has been well-studied for its role in direction-selective information processing. One specific property of these cells is that their dendrites tightly stratify at specific depths within the inner plexiform layer (IPL), which, together with their unique expression of choline acetyltransferase (ChAT), has made them the most common depth marker for studying other retinal neurons in the IPL. This stratifying property makes it unexpected that they could routinely have dendrites reaching into the nuclear layer or that they could have somatic contact specializations, which is exactly what we have found in this study. Specifically, an electron microscopic image volume of sufficient size from a mouse retina provided us with the opportunity to anatomically observe both microscopic details and collective patterns, and our detailed cell reconstructions revealed interesting cell-cell contacts between starburst amacrine neurons. The contact characteristics differ between the respective On and Off starburst amacrine subpopulations, but both occur within the soma layers, as opposed to their regular contact laminae within the inner plexiform layer.
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Affiliation(s)
- Shang Mu
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, United States
| | - Nicholas L Turner
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, United States
- Computer Science Department, Princeton University, Princeton, NJ, United States
| | - William M Silversmith
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, United States
| | - Chris S Jordan
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, United States
| | - Nico Kemnitz
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, United States
| | - Marissa Sorek
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, United States
| | - Celia David
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, United States
| | - Devon L Jones
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, United States
| | - Doug Bland
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, United States
| | - Merlin Moore
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, United States
| | - Amy Robinson Sterling
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, United States
| | - H Sebastian Seung
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, United States
- Computer Science Department, Princeton University, Princeton, NJ, United States
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33
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Yu H, Shi J, Qian J, Wang S, Li S. Single dendritic neural classification with an effective spherical search-based whale learning algorithm. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2023; 20:7594-7632. [PMID: 37161164 DOI: 10.3934/mbe.2023328] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
McCulloch-Pitts neuron-based neural networks have been the mainstream deep learning methods, achieving breakthrough in various real-world applications. However, McCulloch-Pitts neuron is also under longtime criticism of being overly simplistic. To alleviate this issue, the dendritic neuron model (DNM), which employs non-linear information processing capabilities of dendrites, has been widely used for prediction and classification tasks. In this study, we innovatively propose a hybrid approach to co-evolve DNM in contrast to back propagation (BP) techniques, which are sensitive to initial circumstances and readily fall into local minima. The whale optimization algorithm is improved by spherical search learning to perform co-evolution through dynamic hybridizing. Eleven classification datasets were selected from the well-known UCI Machine Learning Repository. Its efficiency in our model was verified by statistical analysis of convergence speed and Wilcoxon sign-rank tests, with receiver operating characteristic curves and the calculation of area under the curve. In terms of classification accuracy, the proposed co-evolution method beats 10 existing cutting-edge non-BP methods and BP, suggesting that well-learned DNMs are computationally significantly more potent than conventional McCulloch-Pitts types and can be employed as the building blocks for the next-generation deep learning methods.
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Affiliation(s)
- Hang Yu
- College of Computer Science and Technology, Taizhou University, Taizhou 225300, China
| | - Jiarui Shi
- Department of Engineering, Wesoft Company Ltd., Kawasaki-shi 210-0024, Japan
| | - Jin Qian
- College of Computer Science and Technology, Taizhou University, Taizhou 225300, China
| | - Shi Wang
- College of Computer Science and Technology, Taizhou University, Taizhou 225300, China
| | - Sheng Li
- College of Computer Science and Technology, Taizhou University, Taizhou 225300, China
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34
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Tarchick MJ, Clute DA, Renna JM. Modeling cholinergic retinal waves: starburst amacrine cells shape wave generation, propagation, and direction bias. Sci Rep 2023; 13:2834. [PMID: 36808155 PMCID: PMC9938278 DOI: 10.1038/s41598-023-29572-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Accepted: 02/07/2023] [Indexed: 02/19/2023] Open
Abstract
Stage II cholinergic retinal waves are one of the first instances of neural activity in the visual system as they are present at a developmental timepoint in which light-evoked activity remains largely undetectable. These waves of spontaneous neural activity sweeping across the developing retina are generated by starburst amacrine cells, depolarize retinal ganglion cells, and drive the refinement of retinofugal projections to numerous visual centers in the brain. Building from several well-established models, we assemble a spatial computational model of starburst amacrine cell-mediated wave generation and wave propagation that includes three significant advancements. First, we model the intrinsic spontaneous bursting of the starburst amacrine cells, including the slow afterhyperpolarization, which shapes the stochastic process of wave generation. Second, we establish a mechanism of wave propagation using reciprocal acetylcholine release, synchronizing the bursting activity of neighboring starburst amacrine cells. Third, we model the additional starburst amacrine cell release of GABA, changing the spatial propagation of retinal waves and in certain instances, the directional bias of the retinal wave front. In total, these advancements comprise a now more comprehensive model of wave generation, propagation, and direction bias.
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Affiliation(s)
| | - Dustin A Clute
- Department of Biology, University of Akron, Akron, OH, 44325-3908, USA
| | - Jordan M Renna
- Department of Biology, University of Akron, Akron, OH, 44325-3908, USA.
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Gaynes JA, Budoff SA, Grybko MJ, Hunt JB, Poleg-Polsky A. Classical center-surround receptive fields facilitate novel object detection in retinal bipolar cells. Nat Commun 2022; 13:5575. [PMID: 36163249 PMCID: PMC9512824 DOI: 10.1038/s41467-022-32761-8] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Accepted: 08/16/2022] [Indexed: 11/11/2022] Open
Abstract
Antagonistic interactions between center and surround receptive field (RF) components lie at the heart of the computations performed in the visual system. Circularly symmetric center-surround RFs are thought to enhance responses to spatial contrasts (i.e., edges), but how visual edges affect motion processing is unclear. Here, we addressed this question in retinal bipolar cells, the first visual neuron with classic center-surround interactions. We found that bipolar glutamate release emphasizes objects that emerge in the RF; their responses to continuous motion are smaller, slower, and cannot be predicted by signals elicited by stationary stimuli. In our hands, the alteration in signal dynamics induced by novel objects was more pronounced than edge enhancement and could be explained by priming of RF surround during continuous motion. These findings echo the salience of human visual perception and demonstrate an unappreciated capacity of the center-surround architecture to facilitate novel object detection and dynamic signal representation.
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Affiliation(s)
- John A Gaynes
- Department of Physiology and Biophysics, University of Colorado School of Medicine, Aurora, CO, USA
| | - Samuel A Budoff
- Department of Physiology and Biophysics, University of Colorado School of Medicine, Aurora, CO, USA
| | - Michael J Grybko
- Department of Physiology and Biophysics, University of Colorado School of Medicine, Aurora, CO, USA
| | - Joshua B Hunt
- Department of Physiology and Biophysics, University of Colorado School of Medicine, Aurora, CO, USA
| | - Alon Poleg-Polsky
- Department of Physiology and Biophysics, University of Colorado School of Medicine, Aurora, CO, USA.
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36
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Strauss S, Korympidou MM, Ran Y, Franke K, Schubert T, Baden T, Berens P, Euler T, Vlasits AL. Center-surround interactions underlie bipolar cell motion sensitivity in the mouse retina. Nat Commun 2022; 13:5574. [PMID: 36163124 PMCID: PMC9513071 DOI: 10.1038/s41467-022-32762-7] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Accepted: 08/16/2022] [Indexed: 11/09/2022] Open
Abstract
Motion sensing is a critical aspect of vision. We studied the representation of motion in mouse retinal bipolar cells and found that some bipolar cells are radially direction selective, preferring the origin of small object motion trajectories. Using a glutamate sensor, we directly observed bipolar cells synaptic output and found that there are radial direction selective and non-selective bipolar cell types, the majority being selective, and that radial direction selectivity relies on properties of the center-surround receptive field. We used these bipolar cell receptive fields along with connectomics to design biophysical models of downstream cells. The models and additional experiments demonstrated that bipolar cells pass radial direction selective excitation to starburst amacrine cells, which contributes to their directional tuning. As bipolar cells provide excitation to most amacrine and ganglion cells, their radial direction selectivity may contribute to motion processing throughout the visual system.
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Affiliation(s)
- Sarah Strauss
- Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany
- Centre for Integrative Neuroscience, University of Tübingen, Tübingen, Germany
- Tübingen AI Center, University of Tübingen, Tübingen, Germany
| | - Maria M Korympidou
- Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany
- Centre for Integrative Neuroscience, University of Tübingen, Tübingen, Germany
| | - Yanli Ran
- Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany
- Centre for Integrative Neuroscience, University of Tübingen, Tübingen, Germany
| | - Katrin Franke
- Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany
- Centre for Integrative Neuroscience, University of Tübingen, Tübingen, Germany
| | - Timm Schubert
- Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany
- Centre for Integrative Neuroscience, University of Tübingen, Tübingen, Germany
| | - Tom Baden
- Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany
- School of Life Sciences, University of Sussex, Brighton, UK
| | - Philipp Berens
- Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany
- Centre for Integrative Neuroscience, University of Tübingen, Tübingen, Germany
- Tübingen AI Center, University of Tübingen, Tübingen, Germany
| | - Thomas Euler
- Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany.
- Centre for Integrative Neuroscience, University of Tübingen, Tübingen, Germany.
| | - Anna L Vlasits
- Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany.
- Centre for Integrative Neuroscience, University of Tübingen, Tübingen, Germany.
- Department of Neurobiology, Northwestern University, Evanston, IL, USA.
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37
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Abstract
Voltage-gated Ca2+ (Cav) channels play pivotal roles in regulating gene transcription, neuronal excitability, and neurotransmitter release. To meet the spatial and temporal demands of visual signaling, Cav channels exhibit unusual properties in the retina compared to their counterparts in other areas of the nervous system. In this article, we review current concepts regarding the specific subtypes of Cav channels expressed in the retina, their intrinsic properties and forms of modulation, and how their dysregulation could lead to retinal disease.
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Affiliation(s)
- Brittany Williams
- Department of Cell Biology & Physiology, Carolina Institute for Developmental Disabilities, and Neuroscience Center, University of North Carolina, Chapel Hill, North Carolina, USA
| | - J Wesley Maddox
- Department of Neuroscience, University of Texas, Austin, Texas, USA;
| | - Amy Lee
- Department of Neuroscience, University of Texas, Austin, Texas, USA;
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38
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Haq W, Basavaraju S, Speck A, Zrenner E. Nature-inspired saccadic-like electrical stimulation paradigm promotes sustained retinal ganglion cell responses by spatiotemporally alternating activation of contiguous multi-electrode patterns. J Neural Eng 2022; 19. [PMID: 36066085 DOI: 10.1088/1741-2552/ac8ad0] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2022] [Accepted: 08/18/2022] [Indexed: 11/12/2022]
Abstract
Objective. Retinal electrical stimulation using multi-electrode arrays (MEAs) aims to restore visual object perception in blind patients. However, the rate and duration of the artificial visual sensations are limited due to the rapid response decay of the stimulated neurons. Hence, we investigated a novel nature-inspired saccadic-like stimulation paradigm (biomimetic) to evoke sustained retinal responses. For implementation, the macroelectrode was replaced by several contiguous microelectrodes and activated non-simultaneously but alternating topologically.Approach.MEAs with hexagonally arranged electrodes were utilized to simulate and record mouse retinal ganglion cells (RGCs). Two shapes were presented electrically using MEAs: a 6e-hexagon (six hexagonally arranged 10µm electrodes; 6e-hexagon diameter: 80µm) and a double-bar (180µm spaced, 320µm in length). Electrodes of each shape were activated in three different modes (simultaneous, circular, and biomimetic ('zig-zag')), stimulating at different frequencies (1-20 Hz).Main results.The biomimetic stimulation generated enhanced RGC responses increasing the activity rate by 87.78%. In the spatiotemporal context, the electrical representation of the 6e-hexagon produced sustained and local RGC responses (∼130µm corresponding to ∼2.5° of the human visual angle) for up to 90 s at 10 Hz stimulation and resolved the electrically presented double-bar. In contrast, during conventional simultaneous stimulation, the responses were poor and declined within seconds. Similarly, the applicability of the biomimetic mode for retinal implants (7 × 8 pixels) was successfully demonstrated. An object shape impersonating a smile was presented electrically, and the recorded data were used to emulate the implant's performance. The spatiotemporal pixel mapping of the activity produced a complete retinal image of the smile.Significance.The application of electrical stimulation in the biomimetic mode produced locally enhanced RGC responses with significantly reduced fading effects and yielded advanced spatiotemporal performance reflecting the presented electrode shapes in the mapped activity imprint. Therefore, it is likely that the RGC responses persist long enough to evoke visual perception and generate a seamless image, taking advantage of the flicker fusion. Hence, replacing the implant's macroelectrodes with microelectrodes and their activation in a topologically alternating biomimetic fashion may overcome the patient's perceptual image fading, thereby enhancing the spatiotemporal characteristics of artificial vision.
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Affiliation(s)
- Wadood Haq
- Neuroretinal Electrophysiology and Imaging, Centre for Ophthalmology, Institute for Ophthalmic Research, University of Tübingen, Elfriede-Aulhorn-Str. 5-7, D-72076 Tübingen, Germany
| | - Sunetra Basavaraju
- Neuroretinal Electrophysiology and Imaging, Centre for Ophthalmology, Institute for Ophthalmic Research, University of Tübingen, Elfriede-Aulhorn-Str. 5-7, D-72076 Tübingen, Germany
| | - Achim Speck
- Neuroretinal Electrophysiology and Imaging, Centre for Ophthalmology, Institute for Ophthalmic Research, University of Tübingen, Elfriede-Aulhorn-Str. 5-7, D-72076 Tübingen, Germany
| | - Eberhart Zrenner
- Neuroretinal Electrophysiology and Imaging, Centre for Ophthalmology, Institute for Ophthalmic Research, University of Tübingen, Elfriede-Aulhorn-Str. 5-7, D-72076 Tübingen, Germany
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39
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Meah A, Boodram V, Bucinca-Cupallari F, Lim H. Axonal architecture of the mouse inner retina revealed by second harmonic generation. PNAS NEXUS 2022; 1:pgac160. [PMID: 36106183 PMCID: PMC9463061 DOI: 10.1093/pnasnexus/pgac160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Accepted: 08/11/2022] [Indexed: 01/29/2023]
Abstract
We describe a novel method for visualizing the network of axons in the unlabeled fresh wholemount retina. The intrinsic radiation of second harmonic generation (SHG) was utilized to visualize single axons of all major retinal neurons, i.e., photoreceptors, horizontal cells, bipolar cells, amacrine cells, and the retinal ganglion cells. The cell types of SHG+ axons were determined using transgenic GFP/YFP mice. New findings were obtained with retinal SHG imaging: Müller cells do not maintain uniformly polarized microtubules in the processes; SHG+ axons of bipolar cells terminate in the inner plexiform layer (IPL) in a subtype-specific manner; a subset of amacrine cells, presumably the axon-bearing types, emits SHG; and the axon-like neurites of amacrine cells provide a cytoskeletal scaffolding for the IPL stratification. To demonstrate the utility, retinal SHG imaging was applied to testing whether the inner retina is preserved in glaucoma, using DBA/2 mice as a model of glaucoma and DBA/2-Gpnmb+ as the nonglaucomatous control. It was found that the morphology of the inner retina was largely intact in glaucoma and the presynaptic compartments to the retinal ganglion cells were uncompromised. It proves retinal SHG imaging as a promising technology for studying the physiological and diseased retinas in 3D.
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Affiliation(s)
- Arafat Meah
- Department of Physics and Astronomy, Hunter College, New York, NY 10065, USA
| | - Vinessia Boodram
- Department of Physics and Astronomy, Hunter College, New York, NY 10065, USA
| | - Festa Bucinca-Cupallari
- Department of Physics and Astronomy, Hunter College, New York, NY 10065, USA,The Graduate Centre of the City University of New York, New York, NY 10065, USA
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40
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Tiriac A, Feller MB. Roles of visually evoked and spontaneous activity in the development of retinal direction selectivity maps. Trends Neurosci 2022; 45:529-538. [PMID: 35491255 DOI: 10.1016/j.tins.2022.04.002] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Revised: 03/30/2022] [Accepted: 04/05/2022] [Indexed: 11/18/2022]
Abstract
Detecting the direction of motion underlies many visually guided behaviors, from reflexive eye movements to identifying and catching moving objects. A subset of motion sensitive cells are direction selective - responding strongly to motion in one direction and weakly to motion in other directions. In mammals, direction-selective cells are found throughout the visual system, including the retina, superior colliculus, and primary visual cortex. Direction selectivity maps are well characterized in the mouse retina, where the preferred directions of retinal direction-selective cells follow the projections of optic flow, generated by the movements animals make as they navigate their environment. Here, we synthesize recent findings implicating activity-dependent mechanisms in the development of retinal direction selectivity maps, with primary focus on studies in mice, and discuss the implications for the development of direction-selective responses in downstream visual areas.
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Affiliation(s)
- Alexandre Tiriac
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
| | - Marla B Feller
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA; Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, 94720, USA.
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41
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Rose P, Klioutchnikov A, Wallace DJ, Greenberg DS, Kerr JND, Sawinski J. Measurement of arbitrary scan patterns for correction of imaging distortions in laser scanning microscopy. BIOMEDICAL OPTICS EXPRESS 2022; 13:3983-3992. [PMID: 35991933 PMCID: PMC9352294 DOI: 10.1364/boe.454155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Revised: 03/17/2022] [Accepted: 03/20/2022] [Indexed: 06/15/2023]
Abstract
Laser scanning microscopy requires beam steering through relay and focusing optics at sub-micron precision. In light-weight mobile systems, such as head mounted multiphoton microscopes, distortion and imaging plane curvature management is unpractical due to the complexity of required optic compensation. Thus, the resulting scan pattern limits anatomical fidelity and decreases analysis algorithm efficiency. Here, we present a technique that reconstructs the three-dimensional scan path only requiring translation of a simple fluorescent test probe. Our method is applicable to any type of scanning instrument with sectioning capabilities without prior assumptions regarding origin of imaging deviations. Further, we demonstrate that the obtained scan pattern allows analysis of these errors, and allows to restore anatomical accuracy relevant for complementary methods such as motion correction, further enhancing spatial registration and feature extraction.
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42
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A survey on dendritic neuron model: Mechanisms, algorithms and practical applications. Neurocomputing 2022. [DOI: 10.1016/j.neucom.2021.08.153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Kim YJ, Peterson BB, Crook JD, Joo HR, Wu J, Puller C, Robinson FR, Gamlin PD, Yau KW, Viana F, Troy JB, Smith RG, Packer OS, Detwiler PB, Dacey DM. Origins of direction selectivity in the primate retina. Nat Commun 2022; 13:2862. [PMID: 35606344 PMCID: PMC9126974 DOI: 10.1038/s41467-022-30405-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Accepted: 04/27/2022] [Indexed: 12/22/2022] Open
Abstract
From mouse to primate, there is a striking discontinuity in our current understanding of the neural coding of motion direction. In non-primate mammals, directionally selective cell types and circuits are a signature feature of the retina, situated at the earliest stage of the visual process. In primates, by contrast, direction selectivity is a hallmark of motion processing areas in visual cortex, but has not been found in the retina, despite significant effort. Here we combined functional recordings of light-evoked responses and connectomic reconstruction to identify diverse direction-selective cell types in the macaque monkey retina with distinctive physiological properties and synaptic motifs. This circuitry includes an ON-OFF ganglion cell type, a spiking, ON-OFF polyaxonal amacrine cell and the starburst amacrine cell, all of which show direction selectivity. Moreover, we discovered that macaque starburst cells possess a strong, non-GABAergic, antagonistic surround mediated by input from excitatory bipolar cells that is critical for the generation of radial motion sensitivity in these cells. Our findings open a door to investigation of a precortical circuitry that computes motion direction in the primate visual system.
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Affiliation(s)
- Yeon Jin Kim
- Department of Biological Structure, University of Washington, Seattle, WA, 98195, USA
| | - Beth B Peterson
- Department of Biological Structure, University of Washington, Seattle, WA, 98195, USA
| | - Joanna D Crook
- Department of Biological Structure, University of Washington, Seattle, WA, 98195, USA
| | - Hannah R Joo
- Department of Biological Structure, University of Washington, Seattle, WA, 98195, USA
| | - Jiajia Wu
- Department of Biomedical Engineering, Northwestern University, Evanston, IL, 60208, USA
| | - Christian Puller
- Department of Biological Structure, University of Washington, Seattle, WA, 98195, USA
| | - Farrel R Robinson
- Department of Biological Structure, University of Washington, Seattle, WA, 98195, USA
- Washington National Primate Research Center, Seattle, WA, 98195, USA
| | - Paul D Gamlin
- Department of Ophthalmology and Vision Sciences, University of Alabama at Birmingham, Birmingham, AL, 35294-4390, USA
| | - King-Wai Yau
- Departments of Neuroscience and Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD, 21205-2185, USA
| | - Felix Viana
- Institute of Neuroscience, UMH-CSIC, San Juan de Alicante, 03550, Spain
| | - John B Troy
- Department of Biomedical Engineering, Northwestern University, Evanston, IL, 60208, USA
| | - Robert G Smith
- Department of Neuroscience, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Orin S Packer
- Department of Biological Structure, University of Washington, Seattle, WA, 98195, USA
| | - Peter B Detwiler
- Department of Physiology and Biophysics, University of Washington, Seattle, WA, 98195, USA
| | - Dennis M Dacey
- Department of Biological Structure, University of Washington, Seattle, WA, 98195, USA.
- Washington National Primate Research Center, Seattle, WA, 98195, USA.
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44
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Patterson SS, Bembry BN, Mazzaferri MA, Neitz M, Rieke F, Soetedjo R, Neitz J. Conserved circuits for direction selectivity in the primate retina. Curr Biol 2022; 32:2529-2538.e4. [PMID: 35588744 DOI: 10.1016/j.cub.2022.04.056] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Revised: 02/25/2022] [Accepted: 04/20/2022] [Indexed: 02/06/2023]
Abstract
The detection of motion direction is a fundamental visual function and a classic model for neural computation. In the non-primate retina, direction selectivity arises in starburst amacrine cell (SAC) dendrites, which provide selective inhibition to direction-selective retinal ganglion cells (dsRGCs). Although SACs are present in primates, their connectivity and the existence of dsRGCs remain open questions. Here, we present a connectomic reconstruction of the primate ON SAC circuit from a serial electron microscopy volume of the macaque central retina. We show that the structural basis for the SACs' ability to confer directional selectivity on postsynaptic neurons is conserved. SACs selectively target a candidate homolog to the mammalian ON-sustained dsRGCs that project to the accessory optic system (AOS) and contribute to gaze-stabilizing reflexes. These results indicate that the capacity to compute motion direction is present in the retina, which is earlier in the primate visual system than classically thought.
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Affiliation(s)
- Sara S Patterson
- Center for Visual Science, University of Rochester, Rochester, NY 14620, USA; Department of Ophthalmology, University of Washington, Seattle, WA 98109, USA.
| | - Briyana N Bembry
- Department of Ophthalmology, University of Washington, Seattle, WA 98109, USA
| | - Marcus A Mazzaferri
- Department of Ophthalmology, University of Washington, Seattle, WA 98109, USA
| | - Maureen Neitz
- Department of Ophthalmology, University of Washington, Seattle, WA 98109, USA
| | - Fred Rieke
- Department of Physiology and Biophysics, University of Washington, Seattle, WA 98195, USA
| | - Robijanto Soetedjo
- Department of Physiology and Biophysics, University of Washington, Seattle, WA 98195, USA; Washington National Primate Research Center, University of Washington, Seattle, WA 98195, USA
| | - Jay Neitz
- Department of Ophthalmology, University of Washington, Seattle, WA 98109, USA.
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45
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Abstract
Retinal circuits transform the pixel representation of photoreceptors into the feature representations of ganglion cells, whose axons transmit these representations to the brain. Functional, morphological, and transcriptomic surveys have identified more than 40 retinal ganglion cell (RGC) types in mice. RGCs extract features of varying complexity; some simply signal local differences in brightness (i.e., luminance contrast), whereas others detect specific motion trajectories. To understand the retina, we need to know how retinal circuits give rise to the diverse RGC feature representations. A catalog of the RGC feature set, in turn, is fundamental to understanding visual processing in the brain. Anterograde tracing indicates that RGCs innervate more than 50 areas in the mouse brain. Current maps connecting RGC types to brain areas are rudimentary, as is our understanding of how retinal signals are transformed downstream to guide behavior. In this article, I review the feature selectivities of mouse RGCs, how they arise, and how they are utilized downstream. Not only is knowledge of the behavioral purpose of RGC signals critical for understanding the retinal contributions to vision; it can also guide us to the most relevant areas of visual feature space. Expected final online publication date for the Annual Review of Vision Science, Volume 8 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
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Affiliation(s)
- Daniel Kerschensteiner
- John F. Hardesty, MD, Department of Ophthalmology and Visual Sciences; Department of Neuroscience; Department of Biomedical Engineering; and Hope Center for Neurological Disorders, Washington University School of Medicine, Saint Louis, Missouri, USA;
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46
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A novel motion direction detection mechanism based on dendritic computation of direction-selective ganglion cells. Knowl Based Syst 2022. [DOI: 10.1016/j.knosys.2022.108205] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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47
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Jain V, Hanson L, Sethuramanujam S, Michaels T, Gawley J, Gregg RG, Pyle I, Zhang C, Smith RG, Berson D, McCall MA, Awatramani GB. Gain control by sparse, ultra-slow glycinergic synapses. Cell Rep 2022; 38:110410. [PMID: 35196487 DOI: 10.1016/j.celrep.2022.110410] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2021] [Revised: 10/21/2021] [Accepted: 01/28/2022] [Indexed: 12/23/2022] Open
Abstract
In the retina, ON starburst amacrine cells (SACs) play a crucial role in the direction-selective circuit, but the sources of inhibition that shape their response properties remain unclear. Previous studies demonstrate that ∼95% of their inhibitory synapses are GABAergic, yet we find that the light-evoked inhibitory currents measured in SACs are predominantly glycinergic. Glycinergic inhibition is extremely slow, relying on non-canonical glycine receptors containing α4 subunits, and is driven by both the ON and OFF retinal pathways. These attributes enable glycine inputs to summate and effectively control the output gain of SACs, expanding the range over which they compute direction. Serial electron microscopic reconstructions reveal three specific types of ON and OFF narrow-field amacrine cells as the presumptive sources of glycinergic inhibition. Together, these results establish an unexpected role for specific glycinergic amacrine cells in the retinal computation of stimulus direction by SACs.
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Affiliation(s)
- Varsha Jain
- Department of Biology, University of Victoria, Victoria, BC V8W 3N5 Canada
| | - Laura Hanson
- Department of Biology, University of Victoria, Victoria, BC V8W 3N5 Canada
| | | | - Tracy Michaels
- Department of Biology, University of Victoria, Victoria, BC V8W 3N5 Canada
| | - Jerram Gawley
- Department of Biology, University of Victoria, Victoria, BC V8W 3N5 Canada
| | - Ronald G Gregg
- Department of Ophthalmology & Visual Sciences, University of Louisville, Louisville, KY 40202, USA
| | - Ian Pyle
- Department of Anatomical Sciences & Neurobiology, University of Louisville, Louisville, KY 40202, USA
| | - Chi Zhang
- Department of Anatomical Sciences & Neurobiology, University of Louisville, Louisville, KY 40202, USA
| | - Robert G Smith
- Department of Neuroscience, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - David Berson
- Department of Neuroscience, Brown University, Providence, RI 02912, USA
| | - Maureen A McCall
- Department of Ophthalmology & Visual Sciences, University of Louisville, Louisville, KY 40202, USA; Department of Anatomical Sciences & Neurobiology, University of Louisville, Louisville, KY 40202, USA.
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48
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Artificial Visual System for Orientation Detection. ELECTRONICS 2022. [DOI: 10.3390/electronics11040568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
The human visual system is one of the most important components of the nervous system, responsible for visual perception. The research on orientation detection, in which neurons of the visual cortex respond only to a line stimulus in a particular orientation, is an important driving force of computer vision and biological vision. However, the principle underlying orientation detection remains a mystery. In order to solve this mystery, we first propose a completely new mechanism that explains planar orientation detection in a quantitative manner. First, we assume that there are planar orientation-detective neurons which respond only to a particular planar orientation locally and that these neurons detect local planar orientation information based on nonlinear interactions that take place on the dendrites. Then, we propose an implementation of these local planar orientation-detective neurons based on their dendritic computations, use them to extract the local planar orientation information, and infer the global planar orientation information from the local planar orientation information. Furthermore, based on this mechanism, we propose an artificial visual system (AVS) for planar orientation detection and other visual information processing. In order to prove the effectiveness of our mechanism and the AVS, we conducted a series of experiments on rectangular images which included rectangles of various sizes, shapes and positions. Computer simulations show that the mechanism can perfectly perform planar orientation detection regardless of their sizes, shapes and positions in all experiments. Furthermore, we compared the performance of both AVS and a traditional convolution neural network (CNN) on planar orientation detection and found that AVS completely outperformed CNN in planar orientation detection in terms of identification accuracy, noise resistance, computation and learning cost, hardware implementation and reasonability.
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49
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Sharpe ZJ, Shehu A, Ichinose T. Asymmetric Distributions of Achromatic Bipolar Cells in the Mouse Retina. Front Neuroanat 2022; 15:786142. [PMID: 35095431 PMCID: PMC8792968 DOI: 10.3389/fnana.2021.786142] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Accepted: 12/13/2021] [Indexed: 11/23/2022] Open
Abstract
In the retina, evolutionary changes can be traced in the topography of photoreceptors. The shape of the visual streak depends on the height of the animal and its habitat, namely, woods, prairies, or mountains. Also, the distribution of distinct wavelength-sensitive cones is unique to each animal. For example, UV and green cones reside in the ventral and dorsal regions in the mouse retina, respectively, whereas in the rat retina these cones are homogeneously distributed. In contrast with the abundant investigation on the distribution of photoreceptors and the third-order neurons, the distribution of bipolar cells has not been well understood. We utilized two enhanced green fluorescent protein (EGFP) mouse lines, Lhx4-EGFP (Lhx4) and 6030405A18Rik-EGFP (Rik), to examine the topographic distributions of bipolar cells in the retina. First, we characterized their GFP-expressing cells using type-specific markers. We found that GFP was expressed by type 2, type 3a, and type 6 bipolar cells in the Rik mice and by type 3b, type 4, and type 5 bipolar cells in the Lhx4 mice. All these types are achromatic. Then, we examined the distributions of bipolar cells in the four cardinal directions and three different eccentricities of the retinal tissue. In the Rik mice, GFP-expressing bipolar cells were more highly observed in the nasal region than those in the temporal retina. The number of GFP cells was not different along with the ventral-dorsal axis. In contrast, in the Lhx4 mice, GFP-expressing cells occurred at a higher density in the ventral region than in the dorsal retina. However, no difference was observed along the nasal-temporal axis. Furthermore, we examined which type of bipolar cells contributed to the asymmetric distributions in the Rik mice. We found that type 3a bipolar cells occurred at a higher density in the temporal region, whereas type 6 bipolar cells were denser in the nasal region. The asymmetricity of these bipolar cells shaped the uneven distribution of the GFP cells in the Rik mice. In conclusion, we found that a subset of achromatic bipolar cells is asymmetrically distributed in the mouse retina, suggesting their unique roles in achromatic visual processing.
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50
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Srivastava P, de Rosenroll G, Matsumoto A, Michaels T, Turple Z, Jain V, Sethuramanujam S, Murphy-Baum BL, Yonehara K, Awatramani GB. Spatiotemporal properties of glutamate input support direction selectivity in the dendrites of retinal starburst amacrine cells. eLife 2022; 11:81533. [PMID: 36346388 PMCID: PMC9674338 DOI: 10.7554/elife.81533] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Accepted: 11/02/2022] [Indexed: 11/09/2022] Open
Abstract
The asymmetric summation of kinetically distinct glutamate inputs across the dendrites of retinal 'starburst' amacrine cells is one of the several mechanisms that have been proposed to underlie their direction-selective properties, but experimentally verifying input kinetics has been a challenge. Here, we used two-photon glutamate sensor (iGluSnFR) imaging to directly measure the input kinetics across individual starburst dendrites. We found that signals measured from proximal dendrites were relatively sustained compared to those measured from distal dendrites. These differences were observed across a range of stimulus sizes and appeared to be shaped mainly by excitatory rather than inhibitory network interactions. Temporal deconvolution analysis suggests that the steady-state vesicle release rate was ~3 times larger at proximal sites compared to distal sites. Using a connectomics-inspired computational model, we demonstrate that input kinetics play an important role in shaping direction selectivity at low stimulus velocities. Taken together, these results provide direct support for the 'space-time wiring' model for direction selectivity.
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Affiliation(s)
| | | | - Akihiro Matsumoto
- Danish Research Institute of Translational Neuroscience, Nordic-EMBL Partnership for Molecular Medicine, Department of Biomedicine, Aarhus UniversityAarhusDenmark
| | - Tracy Michaels
- Department of Biology, University of VictoriaVictoriaCanada
| | - Zachary Turple
- Department of Biology, University of VictoriaVictoriaCanada
| | - Varsha Jain
- Department of Biology, University of VictoriaVictoriaCanada
| | | | | | - Keisuke Yonehara
- Danish Research Institute of Translational Neuroscience, Nordic-EMBL Partnership for Molecular Medicine, Department of Biomedicine, Aarhus UniversityAarhusDenmark
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