1
|
Siomava N, Fuentes JSM, Diogo R. Deconstructing the long‐standing a priori assumption that serial homology generally involves ancestral similarity followed by anatomical divergence. J Morphol 2020; 281:1110-1132. [DOI: 10.1002/jmor.21236] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2020] [Revised: 06/18/2020] [Accepted: 07/07/2020] [Indexed: 12/26/2022]
Affiliation(s)
- Natalia Siomava
- Department of Anatomy Howard University College of Medicine Washington District of Columbia USA
| | | | - Rui Diogo
- Department of Anatomy Howard University College of Medicine Washington District of Columbia USA
| |
Collapse
|
3
|
Zhang Y, Qiao S, Liang S, Wu Z, Yang Z, Feng Z, Sun H, Zhou Y, Sun L, Chen Z, Zou X, Zhang B, Hu J, Li S, Chen Q, Li L, Xu G, Zhao Y, Liu S. Gbps terahertz external modulator based on a composite metamaterial with a double-channel heterostructure. NANO LETTERS 2015; 15:3501-6. [PMID: 25919444 DOI: 10.1021/acs.nanolett.5b00869] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
The past few decades have witnessed a substantial increase in terahertz (THz) research. Utilizing THz waves to transmit communication and imaging data has created a high demand for phase and amplitude modulation. However, current active THz devices, including modulators and switches, still cannot meet THz system demands. Double-channel heterostructures, an alternative semiconductor system, can support nanoscale two-dimensional electron gases (2DEGs) with high carrier concentration and mobility and provide a new way to develop active THz devices. In this Letter, we present a composite metamaterial structure that combines an equivalent collective dipolar array with a double-channel heterostructure to obtain an effective, ultrafast, and all-electronic grid-controlled THz modulator. Electrical control allows for resonant mode conversion between two different dipolar resonances in the active device, which significantly improves the modulation speed and depth. This THz modulator is the first to achieve a 1 GHz modulation speed and 85% modulation depth during real-time dynamic tests. Moreover, a 1.19 rad phase shift was realized. A wireless free-space-modulation THz communication system based on this external THz modulator was tested using 0.2 Gbps eye patterns. Therefore, this active composite metamaterial modulator provides a basis for the development of effective and ultrafast dynamic devices for THz wireless communication and imaging systems.
Collapse
Affiliation(s)
- Yaxin Zhang
- †Terahertz Science Cooperative Innovation Center, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
| | - Shen Qiao
- †Terahertz Science Cooperative Innovation Center, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
| | - Shixiong Liang
- ‡National Key Laboratory of Application Specific Integrated Circuit, Hebei Semiconductor Research Institute, Shijiazhuang 050000, China
| | - Zhenhua Wu
- †Terahertz Science Cooperative Innovation Center, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
| | - Ziqiang Yang
- †Terahertz Science Cooperative Innovation Center, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
| | - Zhihong Feng
- ‡National Key Laboratory of Application Specific Integrated Circuit, Hebei Semiconductor Research Institute, Shijiazhuang 050000, China
| | - Han Sun
- †Terahertz Science Cooperative Innovation Center, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
| | - Yucong Zhou
- †Terahertz Science Cooperative Innovation Center, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
| | - Linlin Sun
- †Terahertz Science Cooperative Innovation Center, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
| | - Zhi Chen
- §National Key Laboratory of Communication, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
| | - Xianbing Zou
- §National Key Laboratory of Communication, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
| | - Bo Zhang
- ∥School of Electronics Engineering, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
| | - Jianhao Hu
- §National Key Laboratory of Communication, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
| | - Shaoqian Li
- §National Key Laboratory of Communication, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
| | - Qin Chen
- ⊥Suzhou Institute of Nano-tech and Nano-bionics, Chinese Academy of Sciences, Suzhou 215123, P. R. China
| | - Ling Li
- †Terahertz Science Cooperative Innovation Center, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
| | - Gaiqi Xu
- †Terahertz Science Cooperative Innovation Center, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
| | - Yuncheng Zhao
- †Terahertz Science Cooperative Innovation Center, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
| | - Shenggang Liu
- †Terahertz Science Cooperative Innovation Center, University of Electronic Science and Technology of China, Chengdu 610054, P. R. China
| |
Collapse
|
6
|
Wang LR, Xue X, Hu XM, Wei MY, Zhang CQ, Ge GL, Liang XJ. Structure-dependent mitochondrial dysfunction and hypoxia induced with single-walled carbon nanotubes. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2014; 10:2859-2869. [PMID: 24677813 DOI: 10.1002/smll.201303342] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2013] [Revised: 03/07/2014] [Indexed: 06/03/2023]
Abstract
Cytotoxicity of nanomaterials on living systems is known to be affected by their size, shape, surface chemistry, and other physicochemical properties. Exposure to a well-characterized subpopulation of specific nanomaterials is therefore desired to reveal more detailed mechanisms. This study develops scalable density gradient ultracentrifugation sorting of highly dispersed single-walled carbon nanotubes (SWNTs) into four distinct bands based on diameter, aggregation, and structural integrity, with greatly improved efficiency, yield, and reproducibility. With guarantee of high yield and stability of four SWNT fractions, it is possible for the first time, to investigate the structure-dependent bioeffects of four SWNT fractions. it is possible Among these, singly-dispersed integral SWNTs show no significant effects on the mitochondrial functions and hypoxia. The aggregated integral SWNTs show more significant effects on the mitochondrial dysfunction and hypoxia compared to the aggregated SWNTs with poor structure integrity. Then, it is found that the aggregated integral SWNTs induced the irregular mitochondria respiratory and pro-apoptotic proteins activation, while aggregated SWNTs with poor structure integrity greatly enhanced reactive oxygen species (ROS) levels. This work supports the view that control of the distinct structure characteristics of SWNTs helps establish clearer structure-bioeffect correlation and health risk assessment. It is also hoped that these results can help in the design of nanomaterials with higher efficiency and accuracy in subcellular translocation.
Collapse
Affiliation(s)
- Li-Rong Wang
- Chinese Academy of Sciences Key Laboratory of Standardization and Measurement for Nanotechnology, National Center for Nanoscience and Technology of China, Beijing, 100190, China
| | | | | | | | | | | | | |
Collapse
|
7
|
Harris K, Sheehan S, Kamm JA, Song YS. Decoding coalescent hidden Markov models in linear time. RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY : ... ANNUAL INTERNATIONAL CONFERENCE, RECOMB ... : PROCEEDINGS. RECOMB (CONFERENCE : 2005- ) 2014; 8394:100-114. [PMID: 25340178 DOI: 10.1007/978-3-319-05269-4_8] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
In many areas of computational biology, hidden Markov models (HMMs) have been used to model local genomic features. In particular, coalescent HMMs have been used to infer ancient population sizes, migration rates, divergence times, and other parameters such as mutation and recombination rates. As more loci, sequences, and hidden states are added to the model, however, the runtime of coalescent HMMs can quickly become prohibitive. Here we present a new algorithm for reducing the runtime of coalescent HMMs from quadratic in the number of hidden time states to linear, without making any additional approximations. Our algorithm can be incorporated into various coalescent HMMs, including the popular method PSMC for inferring variable effective population sizes. Here we implement this algorithm to speed up our demographic inference method diCal, which is equivalent to PSMC when applied to a sample of two haplotypes. We demonstrate that the linear-time method can reconstruct a population size change history more accurately than the quadratic-time method, given similar computation resources. We also apply the method to data from the 1000 Genomes project, inferring a high-resolution history of size changes in the European population.
Collapse
Affiliation(s)
- Kelley Harris
- Department of Mathematics, University of California, Berkeley
| | - Sara Sheehan
- Computer Science Division, University of California, Berkeley
| | - John A Kamm
- Department of Statistics, University of California, Berkeley
| | - Yun S Song
- Department of Integrative Biology, University of California, Berkeley
| |
Collapse
|
8
|
Gong H, Peng R, Liu Z. Carbon nanotubes for biomedical imaging: the recent advances. Adv Drug Deliv Rev 2013; 65:1951-63. [PMID: 24184130 DOI: 10.1016/j.addr.2013.10.002] [Citation(s) in RCA: 221] [Impact Index Per Article: 18.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2013] [Revised: 10/09/2013] [Accepted: 10/16/2013] [Indexed: 11/30/2022]
Abstract
This article reviews the latest progresses regarding the applications of carbon nanotubes (CNTs), including single-walled carbon nanotubes (SWNTs) and multi-walled carbon nanotubes (MWNTs), as multifunctional nano-probes for biomedical imaging. Utilizing the intrinsic band-gap fluorescence of semi-conducting single-walled carbon nanotubes (SWNTs), fluorescence imaging in the near infrared II (NIR-II) region with enhanced tissue penetration and spatial resolution has shown great promise in recent years. Raman imaging based on the resonance Raman scattering of SWNTs has also been explored by a number of groups for in vitro and in vivo imaging of biological samples. The strong absorbance of CNTs in the NIR region can be used for photoacoustic imaging, and their photoacoustic signals can be dramatically enhanced by adding organic dyes, or coating with gold shells. Taking advantages of metal nanoparticle impurities attached to nanotubes, CNTs can also serve as a T2-contrast agent in magnetic resonance (MR) imaging. In addition, when labeled with radioactive isotopes, many groups have developed nuclear imaging with functionalized CNTs. Therefore CNTs are unique imaging probes with great potential in biomedical multimodal imaging.
Collapse
Affiliation(s)
- Hua Gong
- Jiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Institute of Functional Nano & Soft Materials (FUNSOM), Soochow University, Suzhou, Jiangsu 215123, China
| | | | | |
Collapse
|
9
|
Dyshin AA, Eliseeva OV, Bondarenko GV, Kolker AM, Zakharov AG, Fedorov MV, Kiselev MG. Dispersion of single-walled carbon nanotubes in alcohol-cholic acid mixtures. RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY A 2013. [DOI: 10.1134/s0036024413120054] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
10
|
Hansen LP, Ramasse QM, Kisielowski C, Brorson M, Johnson E, Topsøe H, Helveg S. Atomic-Scale Edge Structures on Industrial-Style MoS2 Nanocatalysts. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201103745] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
|
11
|
Hansen LP, Ramasse QM, Kisielowski C, Brorson M, Johnson E, Topsøe H, Helveg S. Atomic-Scale Edge Structures on Industrial-Style MoS2 Nanocatalysts. Angew Chem Int Ed Engl 2011; 50:10153-6. [DOI: 10.1002/anie.201103745] [Citation(s) in RCA: 210] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2011] [Indexed: 11/06/2022]
|