1
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Yang B, Nasab AM, Woodman SJ, Thomas E, Tilton LG, Levin M, Kramer-Bottiglio R. Self-Amputating and Interfusing Machines. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024; 36:e2400241. [PMID: 38780175 DOI: 10.1002/adma.202400241] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Revised: 04/25/2024] [Indexed: 05/25/2024]
Abstract
Biological organisms exhibit phenomenal adaptation through morphology-shifting mechanisms including self-amputation, regeneration, and collective behavior. For example, reptiles, crustaceans, and insects amputate their own appendages in response to threats. Temporary fusion between individuals enables collective behaviors, such as in ants that temporarily fuse to build bridges. The concept of morphological editing often involves the addition and subtraction of mass and can be linked to modular robotics, wherein synthetic body morphology may be revised by rearranging parts. This work describes a reversible cohesive interface made of thermoplastic elastomer that allows for strong attachment and easy detachment of distributed soft robot modules without direct human handling. The reversible joint boasts a modulus similar to materials commonly used in soft robotics, and can thus be distributed throughout soft robot bodies without introducing mechanical incongruities. To demonstrate utility, the reversible joint is implemented in two embodiments: a soft quadruped robot that self-amputates a limb when stuck, and a cluster of three soft-crawling robots that fuse to cross a land gap. This work points toward future robots capable of radical shape-shifting via changes in mass through autotomy and interfusion, as well as highlights the crucial role that interfacial stiffness change plays in autotomizable biological and artificial systems.
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Affiliation(s)
- Bilige Yang
- School of Engineering & Applied Science, Yale University, 9 Hillhouse Avenue, New Haven, CT, 06511, USA
| | - Amir Mohammadi Nasab
- School of Engineering & Applied Science, Yale University, 9 Hillhouse Avenue, New Haven, CT, 06511, USA
| | - Stephanie J Woodman
- School of Engineering & Applied Science, Yale University, 9 Hillhouse Avenue, New Haven, CT, 06511, USA
| | - Eugene Thomas
- School of Engineering & Applied Science, Yale University, 9 Hillhouse Avenue, New Haven, CT, 06511, USA
| | - Liana G Tilton
- School of Engineering & Applied Science, Yale University, 9 Hillhouse Avenue, New Haven, CT, 06511, USA
| | - Michael Levin
- Department of Biology, Allen Discovery Center at Tufts University, 200 Boston Ave. Suite 4604, Medford, MA, 02155, USA
- Wyss Institute for Biologically Inspired Engineering, Harvard University, 3 Blackfan Cir, Boston, MA, 02115, USA
| | - Rebecca Kramer-Bottiglio
- School of Engineering & Applied Science, Yale University, 9 Hillhouse Avenue, New Haven, CT, 06511, USA
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2
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Anderson C, Fernandez-Nieves A. Active many-particle systems and the emergent behavior of dense ant collectives. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2024; 87:066602. [PMID: 38804124 DOI: 10.1088/1361-6633/ad49b4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Accepted: 05/10/2024] [Indexed: 05/29/2024]
Abstract
This article discusses recent work with fire ants,Solenopisis invicta, to illustrate the use of the framework of active matter as a base to rationalize their complex collective behavior. We review much of the work that physicists have done on the group dynamics of these ants, and compare their behavior to two minimal models of active matter, and to the behavior of the synthetic systems that have served to test and drive these models.
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Affiliation(s)
- C Anderson
- Department of Condensed Matter Physics, University of Barcelona, 08028 Barcelona, Spain
| | - A Fernandez-Nieves
- Department of Condensed Matter Physics, University of Barcelona, 08028 Barcelona, Spain
- ICREA-Institució Catalana de Recerca i Estudis Avançats, 08010 Barcelona, Spain
- Institute for Complex Systems (UBICS), University of Barcelona, 08028 Barcelona, Spain
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3
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Wagner RJ, Lamont SC, White ZT, Vernerey FJ. Catch bond kinetics are instrumental to cohesion of fire ant rafts under load. Proc Natl Acad Sci U S A 2024; 121:e2314772121. [PMID: 38621122 PMCID: PMC11047079 DOI: 10.1073/pnas.2314772121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Accepted: 02/18/2024] [Indexed: 04/17/2024] Open
Abstract
Dynamic networks composed of constituents that break and reform bonds reversibly are ubiquitous in nature owing to their modular architectures that enable functions like energy dissipation, self-healing, and even activity. While bond breaking depends only on the current configuration of attachment in these networks, reattachment depends also on the proximity of constituents. Therefore, dynamic networks composed of macroscale constituents (not benefited by the secondary interactions cohering analogous networks composed of molecular-scale constituents) must rely on primary bonds for cohesion and self-repair. Toward understanding how such macroscale networks might adaptively achieve this, we explore the uniaxial tensile response of 2D rafts composed of interlinked fire ants (S. invicta). Through experiments and discrete numerical modeling, we find that ant rafts adaptively stabilize their bonded ant-to-ant interactions in response to tensile strains, indicating catch bond dynamics. Consequently, low-strain rates that should theoretically induce creep mechanics of these rafts instead induce elastic-like response. Our results suggest that this force-stabilization delays dissolution of the rafts and improves toughness. Nevertheless, above 35[Formula: see text] strain low cohesion and stress localization cause nucleation and growth of voids whose coalescence patterns result from force-stabilization. These voids mitigate structural repair until initial raft densities are restored and ants can reconnect across defects. However mechanical recovery of ant rafts during cyclic loading suggests that-even upon reinstatement of initial densities-ants exhibit slower repair kinetics if they were recently loaded at faster strain rates. These results exemplify fire ants' status as active agents capable of memory-driven, stimuli-response for potential inspiration of adaptive structural materials.
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Affiliation(s)
- Robert J. Wagner
- Sibley School of Mechanical & Aerospace Engineering, Cornell University, Ithaca, NY
| | - Samuel C. Lamont
- Paul M. Rady School of Mechanical Engineering, University of Colorado, Boulder, CO
| | - Zachary T. White
- Paul M. Rady School of Mechanical Engineering, University of Colorado, Boulder, CO
| | - Franck J. Vernerey
- Paul M. Rady School of Mechanical Engineering, University of Colorado, Boulder, CO
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4
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Abdelrahman MK, Wagner RJ, Kalairaj MS, Zadan M, Kim MH, Jang LK, Wang S, Javed M, Dana A, Singh KA, Hargett SE, Gaharwar AK, Majidi C, Vernerey FJ, Ware TH. Material assembly from collective action of shape-changing polymers. NATURE MATERIALS 2024; 23:281-289. [PMID: 38177377 DOI: 10.1038/s41563-023-01761-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Accepted: 11/14/2023] [Indexed: 01/06/2024]
Abstract
Some animals form transient, responsive and solid-like ensembles through dynamic structural interactions. These ensembles demonstrate emergent responses such as spontaneous self-assembly, which are difficult to achieve in synthetic soft matter. Here we use shape-morphing units comprising responsive polymers to create solids that self-assemble, modulate their volume and disassemble on demand. The ensemble is composed of a responsive hydrogel, liquid crystal elastomer or semicrystalline polymer ribbons that reversibly bend or twist. The dispersions of these ribbons mechanically interlock, inducing reversible aggregation. The aggregated liquid crystal elastomer ribbons have a 12-fold increase in the yield stress compared with cooled dispersion and contract by 34% on heating. Ribbon type, concentration and shape dictate the aggregation and govern the global mechanical properties of the solid that forms. Coating liquid crystal elastomer ribbons with a liquid metal begets photoresponsive and electrically conductive aggregates, whereas seeding cells on hydrogel ribbons enables self-assembling three-dimensional scaffolds, providing a versatile platform for the design of dynamic materials.
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Affiliation(s)
- Mustafa K Abdelrahman
- Department of Materials Science and Engineering, Texas A&M University, College Station, TX, USA
| | - Robert J Wagner
- Mechanical Engineering Department, Materials Science and Engineering Program, University of Colorado, Boulder, CO, USA
- Department of Mechanical and Aerospace Engineering, Cornell University, Ithaca, NY, USA
| | | | - Mason Zadan
- Department of Mechanical Engineering, Carnegie Mellon University, Pittsburgh, PA, USA
| | - Min Hee Kim
- Department of Biomedical Engineering, Texas A&M University, College Station, TX, USA
| | - Lindy K Jang
- Department of Biomedical Engineering, Texas A&M University, College Station, TX, USA
- Materials Engineering Division, Lawrence Livermore National Laboratory, Livermore, CA, USA
| | - Suitu Wang
- Department of Materials Science and Engineering, Texas A&M University, College Station, TX, USA
| | - Mahjabeen Javed
- Department of Biomedical Engineering, Texas A&M University, College Station, TX, USA
| | - Asaf Dana
- Department of Biomedical Engineering, Texas A&M University, College Station, TX, USA
| | - Kanwar Abhay Singh
- Department of Biomedical Engineering, Texas A&M University, College Station, TX, USA
| | - Sarah E Hargett
- Department of Biomedical Engineering, Texas A&M University, College Station, TX, USA
| | - Akhilesh K Gaharwar
- Department of Biomedical Engineering, Texas A&M University, College Station, TX, USA
| | - Carmel Majidi
- Department of Mechanical Engineering, Carnegie Mellon University, Pittsburgh, PA, USA
| | - Franck J Vernerey
- Mechanical Engineering Department, Materials Science and Engineering Program, University of Colorado, Boulder, CO, USA
| | - Taylor H Ware
- Department of Materials Science and Engineering, Texas A&M University, College Station, TX, USA.
- Department of Biomedical Engineering, Texas A&M University, College Station, TX, USA.
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5
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Goldman DI, Zeb Rocklin D. Robot swarms meet soft matter physics. Sci Robot 2024; 9:eadn6035. [PMID: 38266103 DOI: 10.1126/scirobotics.adn6035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Accepted: 12/19/2023] [Indexed: 01/26/2024]
Abstract
Principles of soft matter physics can be leveraged to develop swarms of active robots with unique properties.
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Affiliation(s)
- Daniel I Goldman
- School of Physics, Georgia Institute of Technology, Atlanta, GA, USA
| | - D Zeb Rocklin
- School of Physics, Georgia Institute of Technology, Atlanta, GA, USA
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6
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Chen CH, Hsieh TH, Huang HY, Cheng YC, Hong TM. Formation and mechanics of fire ant rafts as an active self-healing membrane. Phys Rev E 2024; 109:014607. [PMID: 38366469 DOI: 10.1103/physreve.109.014607] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2023] [Accepted: 11/16/2023] [Indexed: 02/18/2024]
Abstract
The unique ability of fire ants to form a raft to survive flooding rain has enchanted biologists as well as researchers in other disciplines. It was established during the last decade that a three-dimensional aggregation of fire ants exhibits viscoelasticity with respect to external compression and shearing among numerous unusual mechanical properties. Continuing these works, we will study the ant raft in its natural form, i.e., composing no more than two layers. This allowed us to focus on the cracks that are unique to membranes and see how their patterns are influenced by the fact that these ants are mobile and can self-repair the damage to keep their raft from disintegration. In the beginning, we show that vertical and horizontal shaking can also prompt fire ants to aggregate. The canonical view that the stability of ant raft relies on the Cheerios effect and a combination of other parameters is tested. The force-displacement experiment is performed to show that two distinct mechanical responses and fracture patterns, characteristic of ductile and brittle materials, can be elicited, depending on the magnitude of the pull speed. During the process, we counted the number of ants that actively participated in the stress-strain relation and used this information to roughly sketch out the force chain. The latter information reveals that the pull force expedites the alignment of fire ants, in analogy to the effect of an electric field on liquid crystal polymers. To highlight the self-healing nature, we employ the creep experiment to study how the length and Young's modulus of the raft change or relax with time. One major finding is that the raft can exhibit zero Poisson's ratio without resorting to specific geometry structures. This is enabled by the active recruitment of ants from the top layer to the bottom layer to keep the raft from disintegrating.
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Affiliation(s)
- Chung-Hao Chen
- Department of Physics, National Tsing Hua University, Hsinchu, Taiwan 30013, Republic of China
| | - Ting-Heng Hsieh
- Department of Physics, National Tsing Hua University, Hsinchu, Taiwan 30013, Republic of China
| | - Hong-Yue Huang
- Department of Physics, National Tsing Hua University, Hsinchu, Taiwan 30013, Republic of China
| | - Yu-Chuan Cheng
- Department of Physics, National Tsing Hua University, Hsinchu, Taiwan 30013, Republic of China
- Department of Physics, University of California at Santa Barbara, Santa Barbara, California 93106, USA
| | - Tzay-Ming Hong
- Department of Physics, National Tsing Hua University, Hsinchu, Taiwan 30013, Republic of China
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7
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Deblais A, Prathyusha KR, Sinaasappel R, Tuazon H, Tiwari I, Patil VP, Bhamla MS. Worm blobs as entangled living polymers: from topological active matter to flexible soft robot collectives. SOFT MATTER 2023; 19:7057-7069. [PMID: 37706563 PMCID: PMC10523214 DOI: 10.1039/d3sm00542a] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Accepted: 08/14/2023] [Indexed: 09/15/2023]
Abstract
Recently, the study of long, slender living worms has gained attention due to their unique ability to form highly entangled physical structures, exhibiting emergent behaviors. These organisms can assemble into an active three-dimensional soft entity referred to as the "blob", which exhibits both solid-like and liquid-like properties. This blob can respond to external stimuli such as light, to move or change shape. In this perspective article, we acknowledge the extensive and rich history of polymer physics, while illustrating how these living worms provide a fascinating experimental platform for investigating the physics of active, polymer-like entities. The combination of activity, long aspect ratio, and entanglement in these worms gives rise to a diverse range of emergent behaviors. By understanding the intricate dynamics of the worm blob, we could potentially stimulate further research into the behavior of entangled active polymers, and guide the advancement of synthetic topological active matter and bioinspired tangling soft robot collectives.
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Affiliation(s)
- Antoine Deblais
- van der Waals-Zeeman Institute, Institute of Physics, University of Amsterdam, 1098 XH Amsterdam, The Netherlands.
| | - K R Prathyusha
- School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA.
| | - Rosa Sinaasappel
- van der Waals-Zeeman Institute, Institute of Physics, University of Amsterdam, 1098 XH Amsterdam, The Netherlands.
| | - Harry Tuazon
- School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA.
| | - Ishant Tiwari
- School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA.
| | - Vishal P Patil
- Department of Bioengineering, Stanford University, Stanford, CA 94305, USA
| | - M Saad Bhamla
- School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA.
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8
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Islam MS, Faruque IA. Insect visuomotor delay adjustments in group flight support swarm cohesion. Sci Rep 2023; 13:6407. [PMID: 37076527 PMCID: PMC10115836 DOI: 10.1038/s41598-023-32675-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Accepted: 03/31/2023] [Indexed: 04/21/2023] Open
Abstract
Flying insects routinely demonstrate coordinated flight in crowded assemblies despite strict communication and processing constraints. This study experimentally records multiple flying insects tracking a moving visual stimulus. System identification techniques are used to robustly identify the tracking dynamics, including a visuomotor delay. The population delay distributions are quantified for solo and group behaviors. An interconnected visual swarm model incorporating heterogeneous delays is developed, and bifurcation analysis and swarm simulation are applied to assess swarm stability under the delays. The experiment recorded 450 insect trajectories and quantified visual tracking delay variation. Solitary tasks showed a 30ms average delay and standard deviation of 50ms, while group behaviors show a 15ms average and 8ms standard deviation. Analysis and simulation indicate that the delay adjustments during group flight support swarm formation and center stability, and are robust to measurement noise. These results quantify the role of visuomotor delay heterogeneity in flying insects and their role in supporting swarm cohesion through implicit communication.
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9
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Anderson C, Goldsztein G, Fernandez-Nieves A. Ant waves-Spontaneous activity waves in fire-ant columns. SCIENCE ADVANCES 2023; 9:eadd0635. [PMID: 36652514 PMCID: PMC9848474 DOI: 10.1126/sciadv.add0635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/18/2022] [Accepted: 12/15/2022] [Indexed: 06/17/2023]
Abstract
Active matter, which includes crowds of organisms, is composed of constituents that independently consume and dissipate energy. Some active matter systems have been shown to sustain the propagation of various types of waves, resulting from the interplay between density and alignment. Here, we examine a type of solitary wave in dense two-dimensional columns of Solenopsis invicta, fire ants, in which the local activity, density and alignment all play a key role. We demonstrate that these waves are nonlinear and that they are composed of aligned ants that are constrained at the top by the time it takes disordered ants to activate and align and at the bottom by a density minimum enforced by gravity. Our results suggest that intrinsically switchable activity can be a productive framework to understand and trigger a broad range of wave-like behaviors, including stampedes in crowds and herds.
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Affiliation(s)
- Caleb Anderson
- Department of Condensed Matter Physics, University of Barcelona, Barcelona 08028, Spain
- School of Physics, Georgia Institute of Technology, Atlanta, GA 30332, USA
| | | | - Alberto Fernandez-Nieves
- Department of Condensed Matter Physics, University of Barcelona, Barcelona 08028, Spain
- School of Physics, Georgia Institute of Technology, Atlanta, GA 30332, USA
- ICREA-Institució Catalana de Recerca i Estudis Avançats, Barcelona 08010, Spain
- Institute of Complex Systems (UBICS), University of Barcelona, Barcelona 08028, Spain
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10
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Anderson C, Fernandez-Nieves A. Social interactions lead to motility-induced phase separation in fire ants. Nat Commun 2022; 13:6710. [PMID: 36344501 PMCID: PMC9640710 DOI: 10.1038/s41467-022-34181-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Accepted: 10/13/2022] [Indexed: 11/09/2022] Open
Abstract
Collections of fire ants are a form of active matter, as the ants use their internal metabolism to self-propel. In the absence of aligning interactions, theory and simulations predict that active matter with spatially dependent motility can undergo motility-induced phase separation. However, so far in experiments, the motility effects that drive this process have come from either crowding or an external parameter. Though fire ants are social insects that communicate and cooperate in nontrivial ways, we show that the effect of their interactions can also be understood within the framework of motility-induced phase separation. In this context, the slowing down of ants when they approach each other results in an effective attraction that can lead to space-filling clusters and an eventual formation of dynamical heterogeneities. These results illustrate that motility-induced phase separation can provide a unifying framework to rationalize the behavior of a wide variety of active matter systems.
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Affiliation(s)
- Caleb Anderson
- grid.5841.80000 0004 1937 0247Department of Condensed Matter Physics, University of Barcelona, 08028 Barcelona, Spain ,grid.213917.f0000 0001 2097 4943School of Physics, Georgia Institute of Technology, Atlanta, GA 30332 USA
| | - Alberto Fernandez-Nieves
- grid.5841.80000 0004 1937 0247Department of Condensed Matter Physics, University of Barcelona, 08028 Barcelona, Spain ,grid.213917.f0000 0001 2097 4943School of Physics, Georgia Institute of Technology, Atlanta, GA 30332 USA ,grid.425902.80000 0000 9601 989XICREA-Institució Catalana de Recerca i Estudis Avançats, 08010 Barcelona, Spain ,grid.5841.80000 0004 1937 0247Institute for Complex Systems (UBICS), University of Barcelona, 08028 Barcelona, Spain
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11
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Wang T, Wang Z. Liquid-Repellent Surfaces. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:9073-9084. [PMID: 35857533 DOI: 10.1021/acs.langmuir.2c01533] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Surfaces are vibrant sites for various activities with environments, especially as the transfer station for mass and energy exchange. In nature, natural creatures exhibit special wetting and interfacial properties such as water repellency and water affinity to adapt to various environmental challenges by taking advantage of air or liquid infusion media. Inspired by natural surfaces, various engineered liquid-repellent surfaces have been developed with a wide range of applications in both open and closed underwater environments. In particular, underwater conditions are characterized by high viscosity, high pressure, and complex compositions, which pose more challenges for the design of robust and functional repellent surfaces. In this Perspective, we take a parallel approach to introduce two classical liquid-repellent surfaces: an air-infused repellent surface and a lubricated liquid-repellent surface. Then we highlight fundamental challenges and design configurations of robust liquid-repellent surfaces both in air and underwater. We summarize the advantages and drawbacks of two kinds of repellent surfaces and list several applications of liquid-repellent surfaces for use in the ocean, medical care, and energy harvesting. Finally, we provide an outlook of research directions for robust liquid-repellent surfaces.
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12
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Sakiyama T. Perception and recognition of a visual landmark on ant foraging. ARTIFICIAL LIFE AND ROBOTICS 2022. [DOI: 10.1007/s10015-022-00780-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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13
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Anderson CJ, Gibson PA, Fernandez-Nieves A. Janssen effect in columns of fire ants. Phys Rev E 2022; 106:L012604. [PMID: 35974623 DOI: 10.1103/physreve.106.l012604] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2021] [Accepted: 06/17/2022] [Indexed: 06/15/2023]
Abstract
We study fire-ant columns, an active version of passive granular columns, and find that, despite the inherent activity of the ants and their natural tendency to rearrange, the ants develop force-chain structures that help support the weight of the column. Hence, the apparent mass at the bottom of the column saturates with added mass in a Janssen-like fashion, reminiscent of what is seen in passive-grain columns in wide containers. Activity-induced rearrangements within the column, however, lead to changes in the force-chain structure that slightly reduce the supportive nature of the force-chains over time and to fluctuations in the pressure at the bottom of the column that scale like the law of large numbers. We capture the experimental results in simulations that include not only friction with the walls, but also a fluctuating force that introduces activity and that effectively affects the force-chain structure of the ant collective.
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Affiliation(s)
- Caleb J Anderson
- School of Physics, Georgia Institute of Technology, Atlanta, Georgia 30332, USA and Department of Condensed Matter Physics, University of Barcelona, 08028 Barcelona, Spain
| | - Pryor A Gibson
- Department of Mathematics and Physics, North Carolina Central University, Durham, North Carolina 27707, USA
| | - Alberto Fernandez-Nieves
- Department of Condensed Matter Physics, University of Barcelona, 08028 Barcelona, Spain; ICREA-Institució Catalana de Recerca i Estudis Avançats, 08010 Barcelona, Spain; Institute for Complex Systems (UBICS), University of Barcelona, 08028 Barcelona, Spain; and School of Physics, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
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14
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Ko H, Yu TY, Hu DL. Fire ant rafts elongate under fluid flows. BIOINSPIRATION & BIOMIMETICS 2022; 17:045007. [PMID: 35679139 DOI: 10.1088/1748-3190/ac6d98] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Accepted: 05/06/2022] [Indexed: 06/15/2023]
Abstract
Fire ants survive flash floods by linking their bodies together to build waterproof rafts. Most studies of fire ant rafts consider static water conditions, but here, we consider the influence of flow. In particular, when floating on shallow water, the raft can run aground on vegetation, generating stresses in the raft as the water continues to flow around it. In this combined experimental and numerical study, we film the 10 h response of a fire ant raft caught on an anchor and subjected to water flows of 6 cm s-1. In this situation, ant rafts elongate from circular to more streamlined shapes, doubling in aspect ratio before eventually contracting back into smaller circular shapes as they enter dormancy. Ants in upstream regions of the raft exhibit less exploration activity than those downstream, suggesting that ants migrate to areas of lower fluid stress. While the raft is rough, hydrophobic, and heterogeneous in height, we may gain some insight by performing both fluid-structure interaction and agent based simulations on smooth rafts. Elongation to the degree observed is associated with a 48% drag reduction. Moreover, a purely elastic raft does not elongate, but conversely increases its bluff body cross-sectional area. We conclude that ant raftsmust reconfigure to generate the elongated shape observed. This work may provide insights into designing intelligent robotic swarms that can adapt to fluid flows.
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Affiliation(s)
- Hungtang Ko
- George W. Woodruff School of Mechanical Engineering, Georgia Institute of Technology, United States of America
| | - Ting-Ying Yu
- School of Electrical and Computer Engineering, Georgia Institute of Technology, United States of America
| | - David L Hu
- George W. Woodruff School of Mechanical Engineering, Georgia Institute of Technology, United States of America
- School of Biology, Georgia Institute of Technology, United States of America
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15
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Song S, Zhu F, Chen M. Universal scaling law of glass rheology. NATURE MATERIALS 2022; 21:404-409. [PMID: 35102307 DOI: 10.1038/s41563-021-01185-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2020] [Accepted: 12/08/2021] [Indexed: 06/14/2023]
Abstract
The similarity in atomic/molecular structure between liquids and glasses has stimulated a long-standing hypothesis that the nature of glasses may be more fluid-like, rather than the apparent solid. In principle, the nature of glasses can be characterized by the dynamic response of their rheology in a wide rate range, but this has not been realized experimentally, to the best of our knowledge. Here we report the dynamic response of shear stress to the shear strain rate of metallic glasses over a timescale of nine orders of magnitude, equivalent to hundreds of years, by broadband stress relaxation experiments. The dynamic response of the metallic glasses, together with other 'glasses', follows a universal scaling law within the framework of fluid dynamics. The universal scaling law provides comprehensive validation of the conjecture on the jamming (dynamic) phase diagram by which the dynamic behaviours of a wide variety of 'glasses' can be unified under one rubric parameterized by the thermodynamic variables of temperature, volume and stress in the trajectory space.
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Affiliation(s)
- Shuangxi Song
- State Key Laboratory of Metal Matrix Composites, School of Materials Science and Engineering, Shanghai Jiao Tong University, Shanghai, PR China
| | - Fan Zhu
- State Key Laboratory of Metal Matrix Composites, School of Materials Science and Engineering, Shanghai Jiao Tong University, Shanghai, PR China
- WPI Advanced Institute for Materials Research, Tohoku University, Sendai, Japan
- Department of Materials Science, Fudan University, Shanghai, China
| | - Mingwei Chen
- WPI Advanced Institute for Materials Research, Tohoku University, Sendai, Japan.
- Department of Materials Science and Engineering, Hopkins Extreme Materials Institute, Johns Hopkins University, Baltimore, MD, USA.
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16
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Patel ML, Ouellette NT. Formation and dissolution of midge swarms. Phys Rev E 2022; 105:034601. [PMID: 35428071 DOI: 10.1103/physreve.105.034601] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Accepted: 02/17/2022] [Indexed: 06/14/2023]
Abstract
Using external illumination cues, we induce the formation and dissolution of laboratory swarms of the nonbiting midge Chironomus riparius and study their behavior during these transient processes. In general, swarm formation is slower than swarm dissolution. We find that the swarm property that appears most rapidly during formation and disappears most rapidly during dissolution is an emergent mean radial acceleration pointing toward the center of the swarm. Our results strengthen the conjecture that this central effective force may be used as an indicator to distinguish when the midges are swarming from when they are not.
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Affiliation(s)
- Manisha L Patel
- Department of Physics, University of California, Santa Barbara, Santa Barbara, California 93106, USA
| | - Nicholas T Ouellette
- Department of Civil and Environmental Engineering, Stanford University, Stanford, California 94305, USA
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17
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Sakamoto Y, Sakiyama T. Ant Lasius niger joining one-way trails go against the flow. Sci Rep 2022; 12:2361. [PMID: 35149724 PMCID: PMC8837658 DOI: 10.1038/s41598-022-05879-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2021] [Accepted: 01/19/2022] [Indexed: 11/29/2022] Open
Abstract
Social insects, such as ants, use various pheromones as their social signal. In addition, they use the presence of other ants for decision-making. In this study, we attempted to evaluate if individual decision-making is influenced by the complementary use of pheromones and presence of other ants. Ants were induced to form a one-way flow system. We found that when ants entered such a system at a right angle, they tended to move in the opposite direction of the one-way flow system. Interestingly, the target ants moved randomly in the experiments in which no ant and/or no pheromone trails were present. We also developed simulation algorithms and found that artificial ant foragers could reach a certain goal more often if they adopted the reverse run (similar mechanism found in ant experiments) over the forward run (moving in the same direction as their nestmates).
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Affiliation(s)
- Yuta Sakamoto
- Department of Information Systems Science, Faculty of Science and Engineering, Soka University, 1 Chome-236 Tangimachi, Hachioji, Tokyo, 192-8577, Japan
| | - Tomoko Sakiyama
- Department of Information Systems Science, Faculty of Science and Engineering, Soka University, 1 Chome-236 Tangimachi, Hachioji, Tokyo, 192-8577, Japan.
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18
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Ouellette N. A physics perspective on collective animal behavior. Phys Biol 2022; 19. [PMID: 35038691 DOI: 10.1088/1478-3975/ac4bef] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Accepted: 01/17/2022] [Indexed: 11/12/2022]
Abstract
The beautiful dynamic patterns and coordinated motion displayed by groups of social animals are a beautiful example of self-organization in natural farfrom-equilibrium systems. Recent advances in active-matter physics have enticed physicists to begin to consider how their results can be extended from microscale physical or biological systems to groups of real, macroscopic animals. At the same time, advances in measurement technology have led to the increasing availability of high-quality empirical data for the behavior of animal groups both in the laboratory and in the wild. In this review, I survey this available data and the ways that it has been analyzed. I then describe how physicists have approached synthesizing, modeling, and interpreting this information, both at the level of individual animals and at the group scale. In particular, I focus on the kinds of analogies that physicists have made between animal groups and more traditional areas of physics.
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Affiliation(s)
- Nicholas Ouellette
- Department of Civil and Environmental Engineering, Stanford University, 473 Via Ortega, Stanford, California, 94305-6104, UNITED STATES
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19
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Danny Raj M, Kumaran V. Moving efficiently through a crowd: A nature-inspired traffic rule. Phys Rev E 2021; 104:054609. [PMID: 34942830 DOI: 10.1103/physreve.104.054609] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Accepted: 10/15/2021] [Indexed: 11/07/2022]
Abstract
In this article, we propose a traffic rule inspired from nature that instructs how a crowd made up of inert agents should respond to an elite agent to facilitate its motion through the crowd. When an object swims in a fluid medium or an intruder is forced through granular matter, characteristic flow fields are created around them. We show that if inert agents made small movements based on a traffic rule derived from these characteristic flow fields, then they efficiently reorganize and transport enough space for the elite to pass through. The traffic rule used in the article is a dipole field which satisfactorily captures the features of the flow fields around a moving intruder. We study the effectiveness of this dipole traffic rule using numerical simulations in a two-dimensional periodic domain, where one self-propelled elite agent tries to move through a crowd of inert agents that prefer to stay in a state of rest. Simulations are carried out for a wide range of strengths of the traffic rule and packing densities of the crowd. We characterize and analyze four regions in the parameter space-free-flow, motion due to cooperation and frozen and collective drift regions-and discuss the consequence of the traffic rule in light of the collective behavior observed. We believe that the proposed method can be of use in a swarm of robots working in constrained environments.
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Affiliation(s)
- M Danny Raj
- Department of Chemical Engineering, Indian Institute of Science Bangalore, Bengaluru 560012, Karnataka, India
| | - V Kumaran
- Department of Chemical Engineering, Indian Institute of Science Bangalore, Bengaluru 560012, Karnataka, India
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20
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Wagner RJ, Hobbs E, Vernerey FJ. A network model of transient polymers: exploring the micromechanics of nonlinear viscoelasticity. SOFT MATTER 2021; 17:8742-8757. [PMID: 34528646 DOI: 10.1039/d1sm00753j] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Dynamic networks contain crosslinks that re-associate after disconnecting, imparting them with viscoelastic properties. While continuum approaches have been developed to analyze their mechanical response, these approaches can only describe their evolution in an average sense, omitting local, stochastic mechanisms that are critical to damage initiation or strain localization. To address these limitations, we introduce a discrete numerical model that mesoscopically coarse-grains the individual constituents of a dynamic network to predict its mechanical and topological evolution. Each constituent consists of a set of flexible chains that are permanently cross-linked at one end and contain reversible binding sites at their free ends. We incorporate nonlinear force-extension of individual chains via a Langevin model, slip-bond dissociation through Eyring's model, and spatiotemporally-dependent bond attachment based on scaling theory. Applying incompressible, uniaxial tension to representative volume elements at a range of constant strain rates and network connectivities, we then compare the mechanical response of these networks to that predicted by the transient network theory. Ultimately, we find that the idealized continuum approach remains suitable for networks with high chain concentrations when deformed at low strain rates, yet the mesoscale model proves necessary for the exploration of localized stochastic events, such as variability of the bond kinetics, or the nucleation of micro-cavities that likely conceive damage and fracture.
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Affiliation(s)
- Robert J Wagner
- Department of Mechanical Engineering, Program of Materials Science and Engineering, University of Colorado, Boulder, USA.
| | - Ethan Hobbs
- Department of Mechanical Engineering, Program of Materials Science and Engineering, University of Colorado, Boulder, USA.
| | - Franck J Vernerey
- Department of Mechanical Engineering, Program of Materials Science and Engineering, University of Colorado, Boulder, USA.
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21
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Li C, Hurley A, Hu W, Warrick JW, Lozano GL, Ayuso JM, Pan W, Handelsman J, Beebe DJ. Social motility of biofilm-like microcolonies in a gliding bacterium. Nat Commun 2021; 12:5700. [PMID: 34588437 PMCID: PMC8481357 DOI: 10.1038/s41467-021-25408-7] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Accepted: 07/09/2021] [Indexed: 11/27/2022] Open
Abstract
Bacterial biofilms are aggregates of surface-associated cells embedded in an extracellular polysaccharide (EPS) matrix, and are typically stationary. Studies of bacterial collective movement have largely focused on swarming motility mediated by flagella or pili, in the absence of a biofilm. Here, we describe a unique mode of collective movement by a self-propelled, surface-associated biofilm-like multicellular structure. Flavobacterium johnsoniae cells, which move by gliding motility, self-assemble into spherical microcolonies with EPS cores when observed by an under-oil open microfluidic system. Small microcolonies merge, creating larger ones. Microscopic analysis and computer simulation indicate that microcolonies move by cells at the base of the structure, attached to the surface by one pole of the cell. Biochemical and mutant analyses show that an active process drives microcolony self-assembly and motility, which depend on the bacterial gliding apparatus. We hypothesize that this mode of collective bacterial movement on solid surfaces may play potential roles in biofilm dynamics, bacterial cargo transport, or microbial adaptation. However, whether this collective motility occurs on plant roots or soil particles, the native environment for F. johnsoniae, is unknown. Bacterial biofilms are aggregates of surface-associated cells embedded in an extracellular polysaccharide (EPS) matrix. Here, the authors describe a unique mode of collective movement by self-propelled, surface-associated spherical microcolonies with EPS cores in the gliding bacterium Flavobacterium johnsoniae.
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Affiliation(s)
- Chao Li
- Carbone Cancer Center, University of Wisconsin-Madison, Madison, WI, USA
| | - Amanda Hurley
- Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, USA.,Department of Plant Pathology, University of Wisconsin-Madison, Madison, WI, USA
| | - Wei Hu
- Department of Mechanical Engineering, University of Wisconsin-Madison, Madison, WI, USA
| | - Jay W Warrick
- Department of Biomedical Engineering, University of Wisconsin-Madison, Madison, WI, USA
| | - Gabriel L Lozano
- Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, USA.,Divisions of Infectious Diseases and Gastroenterology, Boston Children's Hospital and Harvard Medical School, Boston, MA, USA
| | - Jose M Ayuso
- Carbone Cancer Center, University of Wisconsin-Madison, Madison, WI, USA.,Department of Biomedical Engineering, University of Wisconsin-Madison, Madison, WI, USA.,Morgridge Institute for Research, Madison, WI, USA
| | - Wenxiao Pan
- Department of Mechanical Engineering, University of Wisconsin-Madison, Madison, WI, USA
| | - Jo Handelsman
- Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, USA.,Department of Plant Pathology, University of Wisconsin-Madison, Madison, WI, USA
| | - David J Beebe
- Carbone Cancer Center, University of Wisconsin-Madison, Madison, WI, USA. .,Department of Biomedical Engineering, University of Wisconsin-Madison, Madison, WI, USA. .,Department of Pathology and Laboratory Medicine, University of Wisconsin-Madison, Madison, WI, USA.
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22
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Aime S, Sabato M, Xiao L, Weitz DA. Dynamic Speckle Holography. PHYSICAL REVIEW LETTERS 2021; 127:088003. [PMID: 34477437 DOI: 10.1103/physrevlett.127.088003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2021] [Accepted: 07/09/2021] [Indexed: 06/13/2023]
Abstract
We introduce dynamic speckle holography, a new technique that combines imaging and scattering to measure three-dimensional maps of displacements as small as ten nanometers over several centimeters, greatly extending the capabilities of traditional imaging systems. We attain this sensitivity by imaging speckle patterns of light collected at three scattering angles and measuring the decay in the temporal correlation due to local motion. We use dynamic speckle holography to measure the strain field of a colloidal gel undergoing fracture and establish the surprising role of internal tension in driving the fracture.
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Affiliation(s)
- S Aime
- John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, USA
- Molecular, Macromolecular Chemistry, and Materials, ESPCI Paris, CNRS, PSL University, 10 Rue Vauquelin, 75005 Paris, France
| | - M Sabato
- John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, USA
- Department of Physics, The University of Chicago, Chicago, Illinois 60637, USA
| | - L Xiao
- State Key Laboratory of Petroleum Resources and Prospecting, China University of Petroleum, Beijing 102249, China
| | - D A Weitz
- John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, USA
- Department of Physics, Harvard University, Cambridge, Massachusetts 02138, USA
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23
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Reynolds AM. Understanding the thermodynamic properties of insect swarms. Sci Rep 2021; 11:14979. [PMID: 34294865 PMCID: PMC8298516 DOI: 10.1038/s41598-021-94582-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2021] [Accepted: 07/12/2021] [Indexed: 11/09/2022] Open
Abstract
Sinhuber et al. (Sci Rep 11:3773, 2021) formulated an equation of state for laboratory swarms of the non-biting midge Chironomus riparius that holds true when the swarms are driven through thermodynamic cycles by the application external perturbations. The findings are significant because they demonstrate the surprising efficacy of classical equilibrium thermodynamics for quantitatively characterizing and predicting collective behaviour in biology. Nonetheless, the equation of state obtained by Sinhuber et al. (2021) is anomalous, lacking a physical analogue, making its' interpretation problematic. Moreover, the dynamical processes underlying the thermodynamic cycling were not identified. Here I show that insect swarms are equally well represented as van der Waals gases and I attribute the possibility of thermodynamic cycling to insect swarms consisting of several overlapping sublayers. This brings about a profound change in the understanding of laboratory swarms which until now have been regarded as consisting of non-interacting individuals and lacking any internal structure. I show how the effective interactions can be attributed to the swarms' internal structure, the external perturbations and to the presence of intrinsic noise. I thereby show that intrinsic noise which is known to be crucial for the emergence of the macroscopic mechanical properties of insect swarms is also crucial for the emergence of their thermodynamic properties as encapsulated by their equation of state.
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24
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Wagner RJ, Such K, Hobbs E, Vernerey FJ. Treadmilling and dynamic protrusions in fire ant rafts. J R Soc Interface 2021; 18:20210213. [PMID: 34186017 PMCID: PMC8241487 DOI: 10.1098/rsif.2021.0213] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Accepted: 06/09/2021] [Indexed: 11/18/2022] Open
Abstract
Fire ants (Solenopsis invicta) are exemplary for their formation of cohered, buoyant and dynamic structures composed entirely of their own bodies when exposed to flooded environments. Here, we observe tether-like protrusions that emerge from aggregated fire ant rafts when docked to stationary, vertical rods. Ant rafts comprise a floating, structural network of interconnected ants on which a layer of freely active ants walk. We show here that sustained shape evolution is permitted by the competing mechanisms of perpetual raft contraction aided by the transition of bulk structural ants to the free active layer and outward raft expansion owing to the deposition of free ants into the structural network at the edges, culminating in global treadmilling. Furthermore, we see that protrusions emerge as a result of asymmetries in the edge deposition rate of free ants. Employing both experimental characterization and a model for self-propelled particles in strong confinement, we interpret that these asymmetries are likely to occur stochastically owing to wall accumulation effects and directional motion of active ants when strongly confined by the protrusions' relatively narrow boundaries. Together, these effects may realize the cooperative, yet spontaneous formation of protrusions that fire ants sometimes use for functional exploration and to escape flooded environments.
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Affiliation(s)
- Robert J. Wagner
- Mechanical Engineering Department, Material Science and Engineering Program, University of Colorado, Boulder, CO 80309 USA
| | - Kristen Such
- Mechanical Engineering Department, University of Colorado, Boulder, CO 80309 USA
| | - Ethan Hobbs
- Computer Science Department, Interdisciplinary Quantitative Biology Program, University of Colorado, Boulder, CO 80309 USA
| | - Franck J. Vernerey
- Mechanical Engineering Department, Material Science and Engineering Program, University of Colorado, Boulder, CO 80309 USA
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25
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Sinhuber M, van der Vaart K, Feng Y, Reynolds AM, Ouellette NT. An equation of state for insect swarms. Sci Rep 2021; 11:3773. [PMID: 33580191 PMCID: PMC7881103 DOI: 10.1038/s41598-021-83303-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Accepted: 01/29/2021] [Indexed: 12/02/2022] Open
Abstract
Collective behaviour in flocks, crowds, and swarms occurs throughout the biological world. Animal groups are generally assumed to be evolutionarily adapted to robustly achieve particular functions, so there is widespread interest in exploiting collective behaviour for bio-inspired engineering. However, this requires understanding the precise properties and function of groups, which remains a challenge. Here, we demonstrate that collective groups can be described in a thermodynamic framework. We define an appropriate set of state variables and extract an equation of state for laboratory midge swarms. We then drive swarms through “thermodynamic” cycles via external stimuli, and show that our equation of state holds throughout. Our findings demonstrate a new way of precisely quantifying the nature of collective groups and provide a cornerstone for potential future engineering design.
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Affiliation(s)
- Michael Sinhuber
- Department of Civil and Environmental Engineering, Stanford University, Stanford, CA, 94305, USA.,Carl Von Ossietzky Universität Oldenburg, 26129, Oldenburg, Germany
| | - Kasper van der Vaart
- Department of Civil and Environmental Engineering, Stanford University, Stanford, CA, 94305, USA
| | - Yenchia Feng
- Department of Civil and Environmental Engineering, Stanford University, Stanford, CA, 94305, USA
| | | | - Nicholas T Ouellette
- Department of Civil and Environmental Engineering, Stanford University, Stanford, CA, 94305, USA.
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26
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Abstract
Living systems at all scales aggregate in large numbers for a variety of functions including mating, predation, and survival. The majority of such systems consist of unconnected individuals that collectively flock, school, or swarm. However, some aggregations involve physically entangled individuals, which can confer emergent mechanofunctional material properties to the collective. Here, we study in laboratory experiments and rationalize in theoretical and robophysical models the dynamics of physically entangled and motile self-assemblies of 1-cm-long California blackworms (Lumbriculus variegatus, Annelida: Clitellata: Lumbriculidae). Thousands of individual worms form braids with their long, slender, and flexible bodies to make a three-dimensional, soft, and shape-shifting "blob." The blob behaves as a living material capable of mitigating damage and assault from environmental stresses through dynamic shape transformations, including minimizing surface area for survival against desiccation and enabling transport (negative thermotaxis) from hazardous environments (like heat). We specifically focus on the locomotion of the blob to understand how an amorphous entangled ball of worms can break symmetry to move across a substrate. We hypothesize that the collective blob displays rudimentary differentiation of function across itself, which when combined with entanglement dynamics facilitates directed persistent blob locomotion. To test this, we develop a robophysical model of the worm blobs, which displays emergent locomotion in the collective without sophisticated control or programming of any individual robot. The emergent dynamics of the living functional blob and robophysical model can inform the design of additional classes of adaptive mechanofunctional living materials and emergent robotics.
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27
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Abstract
Moumita Das, Michael Murrell and Christoph Schmidt introduce the Soft Matter collection on active matter.
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Affiliation(s)
- Moumita Das
- School of Physics and Astronomy, Rochester Institute of Technology, Rochester, NY 14623, USA.
| | - Christoph F Schmidt
- Department of Physics and Soft Matter Center, Duke University, Durham, NC 27708, USA.
| | - Michael Murrell
- Physics & Biomedical Engineering Departments, Systems Biology Institute, Yale University, New Haven, CT 06520, USA.
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28
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Giannini JA, Puckett JG. Testing a thermodynamic approach to collective animal behavior in laboratory fish schools. Phys Rev E 2020; 101:062605. [PMID: 32688602 DOI: 10.1103/physreve.101.062605] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2019] [Accepted: 05/08/2020] [Indexed: 11/07/2022]
Abstract
Collective behaviors displayed by groups of social animals are observed frequently in nature. Understanding and predicting the behavior of complex biological systems is dependent on developing effective descriptions and models. While collective animal systems are characteristically nonequilibrium, we can employ concepts from equilibrium statistical mechanics to motivate the measurement of material-like properties in laboratory animal aggregates. Here, we present results from a new set of experiments that utilize high speed footage of two-dimensional schooling events, particle tracking, and projected static and dynamic light fields to observe and control the behavior of negatively phototaxic fish schools (Hemigrammus bleheri). First, we use static light fields consisting of dark circular regions to produce visual stimuli that confine the schools to a range of areas. We find that schools have a maximum density which is independent of group size, and that a swim pressurelike quantity, Π increases linearly with number density, suggesting that unperturbed schools exist on an isotherm. Next, we use dynamic light fields where the radius of the dark region shrinks linearly with time to compress the schools. We find that an effective temperature parameter depends on the compression time and our results are thus consistent with the school having a constant heat flux. These findings further evidence the utility of effective thermodynamic descriptions of nonequilibrium systems in collective animal behavior.
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Affiliation(s)
- Julia A Giannini
- Department of Physics, Syracuse University, Syracuse, New York 13244, USA
| | - James G Puckett
- Department of Physics, Gettysburg College, Gettysburg, Pennsylvania 17325, USA
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29
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Tennenbaum M, Fernandez-Nieves A. Activity effects on the nonlinear mechanical properties of fire-ant aggregations. Phys Rev E 2020; 102:012602. [PMID: 32794916 DOI: 10.1103/physreve.102.012602] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Accepted: 06/09/2020] [Indexed: 12/14/2022]
Abstract
Individual fire ants are inherently active as they are living organisms that convert stored chemical energy into motion. However, each individual ant is not equally disposed to motion at any given time. In an active aggregation, most of the constituent ants are active, and vice versa for an inactive aggregation. Here we look at the role activity plays on the nonlinear mechanical behavior of the aggregation through large amplitude oscillatory shear measurements. We find that the level of viscous nonlinearity can be decreased by increasing the activity or by increasing the volume fraction. In contrast, the level of elastic nonlinearity is not affected by either activity or volume fraction. We interpret this in terms of a transient network with equal rates of linking and unlinking but with varying number of linking and unlinking events.
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Affiliation(s)
- Michael Tennenbaum
- School of Physics, Georgia Institute of Technology, Atlanta, Georgia 30332, USA.,Department of Condensed Matter Physics, University of Barcelona, 08028 Barcelona, Spain
| | - Alberto Fernandez-Nieves
- School of Physics, Georgia Institute of Technology, Atlanta, Georgia 30332, USA.,Department of Condensed Matter Physics, University of Barcelona, 08028 Barcelona, Spain.,ICREA-Instituci Catalana de Recerca i Estudis Avanats, 08010 Barcelona, Spain
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30
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Deblais A, Maggs AC, Bonn D, Woutersen S. Phase Separation by Entanglement of Active Polymerlike Worms. PHYSICAL REVIEW LETTERS 2020; 124:208006. [PMID: 32501051 DOI: 10.1103/physrevlett.124.208006] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2019] [Revised: 03/24/2020] [Accepted: 05/06/2020] [Indexed: 06/11/2023]
Abstract
We investigate the aggregation and phase separation of thin, living T. tubifex worms that behave as active polymers. Randomly dispersed active worms spontaneously aggregate to form compact, highly entangled blobs, a process similar to polymer phase separation, and for which we observe power-law growth kinetics. We find that the phase separation of active polymerlike worms does not occur through Ostwald ripening, but through active motion and coalescence of the phase domains. Interestingly, the growth mechanism differs from conventional growth by droplet coalescence: the diffusion constant characterizing the random motion of a worm blob is independent of its size, a phenomenon that can be explained from the fact that the active random motion arises from the worms at the surface of the blob. This leads to a fundamentally different phase-separation mechanism that may be unique to active polymers.
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Affiliation(s)
- A Deblais
- Van der Waals-Zeeman Institute, Institute of Physics, University of Amsterdam, 1098XH Amsterdam, The Netherlands
| | - A C Maggs
- UMR Gulliver 7083 CNRS, ESPCI, PSL Research University, 10 rue Vauquelin, 75005 Paris, France
| | - D Bonn
- Van der Waals-Zeeman Institute, Institute of Physics, University of Amsterdam, 1098XH Amsterdam, The Netherlands
| | - S Woutersen
- Van 't Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, 1098XH Amsterdam, The Netherlands
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31
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The effect of nest topology on spatial organization and recruitment in the red ant Myrmica rubra. Naturwissenschaften 2020; 107:23. [PMID: 32436082 DOI: 10.1007/s00114-020-01675-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2019] [Revised: 03/27/2020] [Accepted: 04/01/2020] [Indexed: 10/24/2022]
Abstract
Nests of social insects are an important area for the exchange of food and information among workers. We investigated how the topology of nest chambers (as opposed to nest size or environmental factors) affects the spatial distribution of nestmates and the foraging behavior of Myrmica rubra ant colonies. Colonies were housed in artificial nests, each with same-sized chambers differing in the spatial arrangement of galleries. A highly connected central chamber favored higher occupancy rates and a more homogeneous distribution of ants across chambers. In contrast, a chain of successive chambers led to a more heterogeneous distribution of ants, with the occupancy of a chamber chiefly mediated by its distance to the entrance. Irrespective of nest topology, the entrance chamber housed the largest proportion of ants, often including the queen, which exhibited a preference for staying in densely populated chambers. Finally, we investigated how nest topology influenced nestmate recruitment. Surprisingly, a highly connected chamber in the center of the nest did not promote greater recruitment nor activation of ants. At the onset of foraging, the largest number of moving ants was reached in the topology where the most connected chamber was the nest entrance. Later in the process, we found that a chain of successive chambers was the best topology for promoting ant's mobilization. Our work demonstrates that nest topology can shape the spatial organization and the collective response of ant colonies, thereby taking part in their adaptative strategies to exploit environmental resources.
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32
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Deblais A, Woutersen S, Bonn D. Rheology of Entangled Active Polymer-Like T. Tubifex Worms. PHYSICAL REVIEW LETTERS 2020; 124:188002. [PMID: 32441969 DOI: 10.1103/physrevlett.124.188002] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Revised: 03/18/2020] [Accepted: 04/13/2020] [Indexed: 06/11/2023]
Abstract
We experimentally study the rheology of long, slender, and entangled living worms (Tubifex Tubifex). Their level of activity can be controlled by changing the temperature or by adding small amounts of alcohol to make the worms temporarily inactive. Performing classical rheology experiments on this entangled polymer-like system, we find that the rheology is qualitatively similar to that of usual polymers, but, quantitatively, (i) shear thinning is reduced by activity, (ii) the characteristic shear rate for the onset of shear-thinning is given by the time scale of the activity, and (iii) the low shear viscosity as a function of concentration shows a very different scaling from that of regular polymers. Our study paves the way towards a new experimental research field of active "polymer-like worms."
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Affiliation(s)
- A Deblais
- Van der Waals-Zeeman Institute, Institute of Physics, University of Amsterdam, 1098XH Amsterdam, The Netherlands
| | - S Woutersen
- Van 't Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, 1098XH Amsterdam, The Netherlands
| | - D Bonn
- Van der Waals-Zeeman Institute, Institute of Physics, University of Amsterdam, 1098XH Amsterdam, The Netherlands
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33
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Demir E, Yaman YI, Basaran M, Kocabas A. Dynamics of pattern formation and emergence of swarming in Caenorhabditis elegans. eLife 2020; 9:52781. [PMID: 32250243 PMCID: PMC7202895 DOI: 10.7554/elife.52781] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2019] [Accepted: 04/05/2020] [Indexed: 01/10/2023] Open
Abstract
Many animals collectively form complex patterns to tackle environmental difficulties. Several biological and physical factors, such as animal motility, population densities, and chemical cues, play significant roles in this process. However, very little is known about how sensory information interplays with these factors and controls the dynamics of pattern formation. Here, we study the direct relation between oxygen sensing, pattern formation, and emergence of swarming in active Caenorhabditis elegans aggregates. We find that when thousands of animals gather on food, bacteria-mediated decrease in oxygen level slows down the animals and triggers motility-induced phase separation. Three coupled factors—bacterial accumulation, aerotaxis, and population density—act together and control the entire dynamics. Furthermore, we find that biofilm-forming bacterial lawns including Bacillus subtilis and Pseudomonas aeruginosa strongly alter the collective dynamics due to the limited diffusibility of bacteria. Additionally, our theoretical model captures behavioral differences resulting from genetic variations and oxygen sensitivity.
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Affiliation(s)
- Esin Demir
- Bio-Medical Sciences and Engineering Program, Koç University, Sarıyer, Istanbul, Turkey
| | - Y Ilker Yaman
- Department of Physics, Koç University, Sarıyer, Istanbul, Turkey
| | - Mustafa Basaran
- Bio-Medical Sciences and Engineering Program, Koç University, Sarıyer, Istanbul, Turkey
| | - Askin Kocabas
- Bio-Medical Sciences and Engineering Program, Koç University, Sarıyer, Istanbul, Turkey.,Department of Physics, Koç University, Sarıyer, Istanbul, Turkey.,Koç University Surface Science and Technology Center, Koç University, Sarıyer, Istanbul, Turkey.,Koç University Research Center for Translational Medicine, Koç University, Sarıyer, Istanbul, Turkey
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34
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Nave GK, Mitchell NT, Chan Dick JA, Schuessler T, Lagarrigue JA, Peleg O. Attraction, Dynamics, and Phase Transitions in Fire Ant Tower-Building. Front Robot AI 2020; 7:25. [PMID: 33501194 PMCID: PMC7806095 DOI: 10.3389/frobt.2020.00025] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2019] [Accepted: 02/13/2020] [Indexed: 11/18/2022] Open
Abstract
Many insect species, and even some vertebrates, assemble their bodies to form multi-functional materials that combine sensing, computation, and actuation. The tower-building behavior of red imported fire ants, Solenopsis invicta, presents a key example of this phenomenon of collective construction. While biological studies of collective construction focus on behavioral assays to measure the dynamics of formation and studies of swarm robotics focus on developing hardware that can assemble and interact, algorithms for designing such collective aggregations have been mostly overlooked. We address this gap by formulating an agent-based model for collective tower-building with a set of behavioral rules that incorporate local sensing of neighboring agents. We find that an attractive force makes tower building possible. Next, we explore the trade-offs between attraction and random motion to characterize the dynamics and phase transition of the tower building process. Lastly, we provide an optimization tool that may be used to design towers of specific shapes, mechanical loads, and dynamical properties, such as mechanical stability and mobility of the center of mass.
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Affiliation(s)
- Gary K. Nave
- BioFrontiers Institute, University of Colorado Boulder, Boulder, CO, United States
- Computer Science, University of Colorado Boulder, Boulder, CO, United States
| | - Nelson T. Mitchell
- Computer Science, University of Colorado Boulder, Boulder, CO, United States
| | - Jordan A. Chan Dick
- Computer Science, University of Colorado Boulder, Boulder, CO, United States
| | - Tyler Schuessler
- Applied Mathematics, University of Colorado Boulder, Boulder, CO, United States
| | - Joaquin A. Lagarrigue
- Computer Science, University of Colorado Boulder, Boulder, CO, United States
- Psychology and Neuroscience, University of Colorado Boulder, Boulder, CO, United States
| | - Orit Peleg
- BioFrontiers Institute, University of Colorado Boulder, Boulder, CO, United States
- Computer Science, University of Colorado Boulder, Boulder, CO, United States
- Santa Fe Institute, Santa Fe, NM, United States
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35
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Tanida S, Furuta K, Nishikawa K, Hiraiwa T, Kojima H, Oiwa K, Sano M. Gliding filament system giving both global orientational order and clusters in collective motion. Phys Rev E 2020; 101:032607. [PMID: 32289972 DOI: 10.1103/physreve.101.032607] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2018] [Accepted: 02/21/2020] [Indexed: 06/11/2023]
Abstract
Emergence and collapse of coherent motions of self-propelled particles are affected more by particle motions and interactions than by their material or biological details. In the reconstructed systems of biofilaments and molecular motors, several types of collective motion including a global-order pattern emerge due to the alignment interaction. Meanwhile, earlier studies show that the alignment interaction of a binary collision of biofilaments is too weak to form the global order. The multiple collision is revealed to be important to achieve global order, but it is still unclear what kind of multifilament collision is actually involved. In this study, we demonstrate that not only alignment but also crossing of two filaments is essential to produce an effective multiple-particle interaction and the global order. We design the reconstructed system of biofilaments and molecular motors to vary a probability of the crossing of biofilaments on a collision and thus control the effect of volume exclusion. In this system, biofilaments glide along their polar strands on the turf of molecular motors and can align themselves nematically when they collide with each other. Our experiments show the counterintuitive result, in which the global order is achieved only when the crossing is allowed. When the crossing is prohibited, the cluster pattern emerges instead. We also investigate the numerical model in which we can change the strength of the volume exclusion effect and find that the global orientational order and clusters emerge with weak and strong volume exclusion effects, respectively. With those results and simple theory, we conclude that not only alignment but also finite crossing probability are necessary for the effective multiple-particles interaction forming the global order. Additionally, we describe the chiral symmetry breaking of a microtubule motion which causes a rotation of global alignment.
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Affiliation(s)
- Sakurako Tanida
- Department of Physics, Universal Biology Institute, Graduate School of Science, the University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, Japan
| | - Ken'ya Furuta
- National Institute of Information and Communications Technology, 588-2 Iwaoka, Iwaoka-cho, Nishi-ku, Kobe, Japan
| | - Kaori Nishikawa
- Department of Physics, Universal Biology Institute, Graduate School of Science, the University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, Japan
| | - Tetsuya Hiraiwa
- Department of Physics, Universal Biology Institute, Graduate School of Science, the University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, Japan
- Mechanobiology Institute, National University of Singapore, Singapore 117411, Singapore
| | - Hiroaki Kojima
- National Institute of Information and Communications Technology, 588-2 Iwaoka, Iwaoka-cho, Nishi-ku, Kobe, Japan
| | - Kazuhiro Oiwa
- National Institute of Information and Communications Technology, 588-2 Iwaoka, Iwaoka-cho, Nishi-ku, Kobe, Japan
| | - Masaki Sano
- Department of Physics, Universal Biology Institute, Graduate School of Science, the University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, Japan
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36
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Sinhuber M, van der Vaart K, Ouellette NT. Response of insect swarms to dynamic illumination perturbations. J R Soc Interface 2020; 16:20180739. [PMID: 30958145 DOI: 10.1098/rsif.2018.0739] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Many animal species across taxa spontaneously form aggregations that exhibit collective behaviour. In the wild, these collective systems are unavoidably influenced by ubiquitous environmental perturbations such as wind gusts, acoustic and visual stimuli, or the presence of predators or other animals. The way these environmental perturbations influence the animals' collective behaviour, however, is poorly understood, in part because conducting controlled quantitative perturbation experiments in natural settings is challenging. To circumvent the need for controlling environmental conditions in the field, we study swarming midges in a laboratory experiment where we have full control over external perturbations. Here, we consider the effect of controlled variable light exposure on the swarming behaviour. We find that not only do individuals in the swarm respond to light changes by speeding up during brighter conditions but also the swarm as a whole responds to these perturbations by compressing and simultaneously increasing the attraction of individual midges to its centre of mass. The swarm-level response can be described by making an analogy to classical thermodynamics, with the state of the swarm moving along an isotherm in a thermodynamic phase plane.
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Affiliation(s)
- Michael Sinhuber
- Department of Civil and Environmental Engineering, Stanford University , Stanford, CA 94305 , USA
| | - Kasper van der Vaart
- Department of Civil and Environmental Engineering, Stanford University , Stanford, CA 94305 , USA
| | - Nicholas T Ouellette
- Department of Civil and Environmental Engineering, Stanford University , Stanford, CA 94305 , USA
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37
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Sakiyama T. Interactions between worker ants may influence the growth of ant cemeteries. Sci Rep 2020; 10:2344. [PMID: 32047188 PMCID: PMC7012894 DOI: 10.1038/s41598-020-59202-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2019] [Accepted: 01/09/2020] [Indexed: 11/16/2022] Open
Abstract
When an ant dies within a nest, a worker ant carries its corpse away from the nest and drops it onto a pile known as an ant cemetery. These ant cemeteries form cluster patterns, and the dynamics of the corpse piles have been studied experimentally. The aim of the present study was to investigate how sensitivity to the presence of nest-mates would influence the corpse-carrying behaviour of ants, and how this would impact the dynamics of corpse pile clustering. This was achieved by developing an agent-based computational model in which simulated ‘ants’ (the agents) carry and drop ‘corpses’, resulting in the growth of the corpse pile. In the model, the probability of an ant dropping a corpse was tuned according to the presence or absence of nest-mates. The pile dynamics of the resulting model showed a partial match with the time series evolution of corpse piles observed with real ants in previous experimental studies. Although the switch of probabilities is a thought experiment, our results suggest that the corpse-carrying behaviour of worker ants might be influenced by interactions with their nest-mates because there is evidence that ant behaviour can be influenced by encounter rates.
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Affiliation(s)
- Tomoko Sakiyama
- Department of Information Systems Science, Faculty of Science and Engineering, Soka University, Tokyo, 192-8577, Japan.
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38
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Shishkov O, Trebuchon J, Yunker PJ, Franklin S, Hu DL. Black Soldier Fly Larvae Rearrange under Compression. Integr Comp Biol 2019; 59:1646-1652. [PMID: 31372636 DOI: 10.1093/icb/icz133] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Thousands of black soldier larvae hatch simultaneously from eggs laid within rotting vegetation or animal carcasses. Over the next few weeks, they grow while compressed by both their surroundings and each other. When compressed, these larvae rearrange to reduce the forces upon them. How quickly can larvae rearrange, and what final state do they choose? In this experimental study, we use a universal testing machine to conduct creep tests on larvae, squeezing them to set volume fractions and measuring the time course of their reaction force. Live larvae come to equilibrium at a rate 10 times faster than dead larvae, indicating that their small movements can rearrange them faster than just settling. The relaxation of dead larvae is well described by stretched exponentials, which also characterize hierarchical self-avoiding materials such as polymers or balls of crumpled aluminum foil. The equilibrium pressures of live larvae are comparable to those of dead larvae, suggesting that such pressures are dictated by the physics of their bodies rather than their behavior. Live larvae perform fluctuations to actively maintain this equilibrium pressure. This ability to survive large pressures might have applications in the larvae-rearing industry, where both live and dead larvae are packed in containers for shipping.
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Affiliation(s)
- Olga Shishkov
- School of Mechanical Engineering, Georgia Institute of Technology, Atlanta, GA, USA
| | - Joshua Trebuchon
- School of Physics, Georgia Institute of Technology, Atlanta, GA, USA
| | - Peter J Yunker
- School of Physics, Georgia Institute of Technology, Atlanta, GA, USA
| | - Scott Franklin
- School of Physics, Rochester Institute of Technology, Rochester, NY, USA
| | - David L Hu
- School of Mechanical Engineering, Georgia Institute of Technology, Atlanta, GA, USA.,School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA
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39
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van der Vaart K, Sinhuber M, Reynolds AM, Ouellette NT. Mechanical spectroscopy of insect swarms. SCIENCE ADVANCES 2019; 5:eaaw9305. [PMID: 31501772 PMCID: PMC6719412 DOI: 10.1126/sciadv.aaw9305] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2019] [Accepted: 06/03/2019] [Indexed: 05/02/2023]
Abstract
Social animals routinely form groups, which are thought to display emergent, collective behavior. This hypothesis suggests that animal groups should have properties at the group scale that are not directly linked to the individuals, much as bulk materials have properties distinct from those of their constituent atoms. Materials are often probed by measuring their response to controlled perturbations, but these experiments are difficult to conduct on animal groups, particularly in the wild. Here, we show that laboratory midge swarms have emergent continuum mechanical properties, displaying a collective viscoelastic response to applied oscillatory visual stimuli that allows us to extract storage and loss moduli for the swarm. We find that the swarms strongly damp perturbations, both viscously and inertially. Thus, unlike bird flocks, which appear to use collective behavior to promote lossless information flow through the group, our results suggest that midge swarms use it to stabilize themselves against environmental perturbations.
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Affiliation(s)
- Kasper van der Vaart
- Department of Civil and Environmental Engineering, Stanford University, Stanford, CA 94305, USA
| | - Michael Sinhuber
- Department of Civil and Environmental Engineering, Stanford University, Stanford, CA 94305, USA
| | | | - Nicholas T. Ouellette
- Department of Civil and Environmental Engineering, Stanford University, Stanford, CA 94305, USA
- Corresponding author.
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40
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Abstract
Traditionally animal groups have been characterized by the macroscopic patterns that they form. It is now recognised that such patterns convey limited information about the nature of the aggregation as a whole. Aggregate properties cannot be determined by passive observations alone; instead one must interact with them. One of the first such dynamical tests revealed that swarms of flying insects have macroscopic mechanical properties similar to solids, including a finite Young's modulus and yield strength. Here I show, somewhat counterintuitively, that the emergence of these solid-like properties can be attributed to centre-of-mass movements (heat). This suggests that perturbations can drive phase transitions.
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Affiliation(s)
- Andy M Reynolds
- Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, United Kingdom
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41
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Smith NM, Dickerson AK, Murphy D. Organismal aggregations exhibit fluidic behaviors: a review. BIOINSPIRATION & BIOMIMETICS 2019; 14:031001. [PMID: 30690442 DOI: 10.1088/1748-3190/ab0253] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Groups of organisms such as flocks, swarms, herds, and schools form for a variety of motivations linked to survival and proliferation. Their size, locomotive domain, population, and the environmental stimuli guiding motion make challenging the study of member interactions and global behaviors. In this review, we borrow principles and analogies from fluids to describe the characteristics of organismal aggregations, which may inspire new tools for the analysis of collective motion. Examples of fluid resemblance include open channel flow, droplet formation, and particle-laden flow. We show how the properties of density, viscosity, and surface tension have strong parallels in the structure and behavior of aggregations of contrasting scale and domain. In certain cases, aggregations are sufficiently fluid-like that values can be assigned to such properties. We highlight how organisms engaging in collective motion can flow, roll, and change phase. Finally, we present limitations and exceptions for the application of fluidic principles to the motion of living groups.
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Affiliation(s)
- Nicholas M Smith
- Department of Mechanical and Aerospace Engineering, University of Central Florida Orlando, Florida, United States of America
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43
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Biological active matter aggregates: Inspiration for smart colloidal materials. Adv Colloid Interface Sci 2019; 263:38-51. [PMID: 30504078 DOI: 10.1016/j.cis.2018.11.006] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2018] [Revised: 11/02/2018] [Accepted: 11/20/2018] [Indexed: 12/16/2022]
Abstract
Aggregations of social organisms exhibit a remarkable range of properties and functionalities. Multiple examples, such as fire ants or slime mold, show how a population of individuals is able to overcome an existential threat by gathering into a solid-like aggregate with emergent functionality. Surprisingly, these aggregates are driven by simple rules, and their mechanisms show great parallelism among species. At the same time, great effort has been made by the scientific community to develop active colloidal materials, such as microbubbles or Janus particles, which exhibit similar behaviors. However, a direct connection between these two realms is still not evident, and it would greatly benefit future studies. In this review, we first discuss the current understanding of living aggregates, point out the mechanisms in their formation and explore the vast range of emergent properties. Second, we review the current knowledge in aggregated colloidal systems, the methods used to achieve the aggregations and their potential functionalities. Based on this knowledge, we finally identify a set of over-arching principles commonly found in biological aggregations, and further suggest potential future directions for the creation of bio-inspired colloid aggregations.
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44
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Vernerey FJ, Shen T, Sridhar SL, Wagner RJ. How do fire ants control the rheology of their aggregations? A statistical mechanics approach. J R Soc Interface 2018; 15:20180642. [PMID: 30381347 PMCID: PMC6228480 DOI: 10.1098/rsif.2018.0642] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2018] [Accepted: 10/08/2018] [Indexed: 12/15/2022] Open
Abstract
Active networks are omnipresent in nature, from the molecular to the macro-scale. In this study, we explore the mechanical behaviour of fire ant aggregations, closely knit swarms that display impressive dynamics culminating with the aggregations' capacity to self-heal and adapt to the environment. Although the combined elasticity and rheology of the ant aggregation can be characterized by phenomenological mechanical models (e.g. linear Maxwell or Kelvin-Voigt model), it is not clear how the behaviour of individual ants affects the aggregations' emerging responses. Here, we explore an alternative way to think about these materials, describing them as a collection of individuals connected via elastic chains that associate and dissociate over time. Using our knowledge of these connections-e.g. their elasticity and attachment/dissociation rates-we construct a statistical description of connection stretch and derive an evolution equation for the corresponding stretch distribution. This time-evolving stretch distribution is then used to determine important macroscopic measures, e.g. stress, energy storage and energy dissipation, in the network. In this context, we show how the physical characteristics and activities of individual ants can explain the elasticity, flow and shear thinning of the aggregation. In particular, we find that experimental results are matched if the detachment rate between two individuals increases with tension in the connection.
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Affiliation(s)
- Franck J Vernerey
- Department of Mechanical Engineering, Program of Materials Science and Engineering, University of Colorado, Boulder, CO, USA
| | - Tong Shen
- Department of Mechanical Engineering, Program of Materials Science and Engineering, University of Colorado, Boulder, CO, USA
| | - Shankar Lalitha Sridhar
- Department of Mechanical Engineering, Program of Materials Science and Engineering, University of Colorado, Boulder, CO, USA
| | - Robert J Wagner
- Department of Mechanical Engineering, Program of Materials Science and Engineering, University of Colorado, Boulder, CO, USA
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45
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Méndez-Valderrama JF, Kinkhabwala YA, Silver J, Cohen I, Arias TA. Density-functional fluctuation theory of crowds. Nat Commun 2018; 9:3538. [PMID: 30166535 PMCID: PMC6117271 DOI: 10.1038/s41467-018-05750-z] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Accepted: 07/26/2018] [Indexed: 12/05/2022] Open
Abstract
A primary goal of collective population behavior studies is to determine the rules governing crowd distributions in order to predict future behaviors in new environments. Current top-down modeling approaches describe, instead of predict, specific emergent behaviors, whereas bottom-up approaches must postulate, instead of directly determine, rules for individual behaviors. Here, we employ classical density functional theory (DFT) to quantify, directly from observations of local crowd density, the rules that predict mass behaviors under new circumstances. To demonstrate our theory-based, data-driven approach, we use a model crowd consisting of walking fruit flies and extract two functions that separately describe spatial and social preferences. The resulting theory accurately predicts experimental fly distributions in new environments and provides quantification of the crowd “mood”. Should this approach generalize beyond milling crowds, it may find powerful applications in fields ranging from spatial ecology and active matter to demography and economics. Tools from statistical physics can be used to investigate a large variety of fields ranging from economics to biology. Here the authors first adapt density-functional theory to predict the distributions of crowds in new environments and then validate their approach using groups of fruit flies.
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Affiliation(s)
| | - Yunus A Kinkhabwala
- Department of Applied and Engineering Physics, Cornell University, Ithaca, NY, 14853, USA
| | - Jeffrey Silver
- Metron Inc., Scientific Solutions, Reston, VA, 2019, USA
| | - Itai Cohen
- Department of Physics, Cornell University, Ithaca, NY, 14853, USA
| | - T A Arias
- Department of Physics, Cornell University, Ithaca, NY, 14853, USA.
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46
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Mhatre N, Robert D. The Drivers of Heuristic Optimization in Insect Object Manufacture and Use. Front Psychol 2018; 9:1015. [PMID: 29977216 PMCID: PMC6021527 DOI: 10.3389/fpsyg.2018.01015] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2018] [Accepted: 05/31/2018] [Indexed: 11/17/2022] Open
Abstract
Insects have small brains and heuristics or 'rules of thumb' are proposed here to be a good model for how insects optimize the objects they make and use. Generally, heuristics are thought to increase the speed of decision making by reducing the computational resources needed for making decisions. By corollary, heuristic decisions are also deemed to impose a compromise in decision accuracy. Using examples from object optimization behavior in insects, we will argue that heuristics do not inevitably imply a lower computational burden or lower decision accuracy. We also show that heuristic optimization may be driven by certain features of the optimization problem itself: the properties of the object being optimized, the biology of the insect, and the properties of the function being optimized. We also delineate the structural conditions under which heuristic optimization may achieve accuracy equivalent to or better than more fine-grained and onerous optimization methods.
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Affiliation(s)
- Natasha Mhatre
- Department of Biological Sciences, University of Toronto at Scarborough, Scarborough, ON, Canada
| | - Daniel Robert
- School of Biological Sciences, University of Bristol, Bristol, United Kingdom
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47
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Bonazzi D, Lo Schiavo V, Machata S, Djafer-Cherif I, Nivoit P, Manriquez V, Tanimoto H, Husson J, Henry N, Chaté H, Voituriez R, Duménil G. Intermittent Pili-Mediated Forces Fluidize Neisseria meningitidis Aggregates Promoting Vascular Colonization. Cell 2018; 174:143-155.e16. [PMID: 29779947 DOI: 10.1016/j.cell.2018.04.010] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2017] [Revised: 01/11/2018] [Accepted: 04/10/2018] [Indexed: 12/13/2022]
Abstract
Neisseria meningitidis, a bacterium responsible for meningitis and septicemia, proliferates and eventually fills the lumen of blood capillaries with multicellular aggregates. The impact of this aggregation process and its specific properties are unknown. We first show that aggregative properties are necessary for efficient infection and study their underlying physical mechanisms. Micropipette aspiration and single-cell tracking unravel unique features of an atypical fluidized phase, with single-cell diffusion exceeding that of isolated cells. A quantitative description of the bacterial pair interactions combined with active matter physics-based modeling show that this behavior relies on type IV pili active dynamics that mediate alternating phases of bacteria fast mutual approach, contact, and release. These peculiar fluid properties proved necessary to adjust to the geometry of capillaries upon bacterial proliferation. Intermittent attractive forces thus generate a fluidized phase that allows for efficient colonization of the blood capillary network during infection.
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Affiliation(s)
- Daria Bonazzi
- Pathogenesis of Vascular Infections Unit, INSERM, Institut Pasteur, 75015 Paris, France
| | - Valentina Lo Schiavo
- Pathogenesis of Vascular Infections Unit, INSERM, Institut Pasteur, 75015 Paris, France
| | - Silke Machata
- Pathogenesis of Vascular Infections Unit, INSERM, Institut Pasteur, 75015 Paris, France
| | - Ilyas Djafer-Cherif
- Service de Physique de l'Etat Condensé, CEA, CNRS, Université Paris-Saclay, 91191 Gif-sur-Yvette, France
| | - Pierre Nivoit
- Pathogenesis of Vascular Infections Unit, INSERM, Institut Pasteur, 75015 Paris, France
| | - Valeria Manriquez
- Pathogenesis of Vascular Infections Unit, INSERM, Institut Pasteur, 75015 Paris, France
| | | | - Julien Husson
- Laboratoire d'Hydrodynamique (LadHyX), Department of Mechanics, Ecole Polytechnique-CNRS UMR7646, 91128 Palaiseau, France
| | - Nelly Henry
- Laboratoire Jean Perrin, CNRS UMR 3231, Université Pierre et Marie Curie, 75005 Paris, France
| | - Hugues Chaté
- Service de Physique de l'Etat Condensé, CEA, CNRS, Université Paris-Saclay, 91191 Gif-sur-Yvette, France; Computational Science Research Center, Beijing 100193, China; Laboratoire de Physique Théorique de la Matière Condensée, CNRS, Université Pierre et Marie Curie, 75005 Paris, France
| | - Raphael Voituriez
- Laboratoire Jean Perrin, CNRS UMR 3231, Université Pierre et Marie Curie, 75005 Paris, France; Laboratoire de Physique Théorique de la Matière Condensée, CNRS, Université Pierre et Marie Curie, 75005 Paris, France
| | - Guillaume Duménil
- Pathogenesis of Vascular Infections Unit, INSERM, Institut Pasteur, 75015 Paris, France.
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48
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Schroeder TBH, Houghtaling J, Wilts BD, Mayer M. It's Not a Bug, It's a Feature: Functional Materials in Insects. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2018; 30:e1705322. [PMID: 29517829 DOI: 10.1002/adma.201705322] [Citation(s) in RCA: 74] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2017] [Revised: 11/15/2017] [Indexed: 05/25/2023]
Abstract
Over the course of their wildly successful proliferation across the earth, the insects as a taxon have evolved enviable adaptations to their diverse habitats, which include adhesives, locomotor systems, hydrophobic surfaces, and sensors and actuators that transduce mechanical, acoustic, optical, thermal, and chemical signals. Insect-inspired designs currently appear in a range of contexts, including antireflective coatings, optical displays, and computing algorithms. However, as over one million distinct and highly specialized species of insects have colonized nearly all habitable regions on the planet, they still provide a largely untapped pool of unique problem-solving strategies. With the intent of providing materials scientists and engineers with a muse for the next generation of bioinspired materials, here, a selection of some of the most spectacular adaptations that insects have evolved is assembled and organized by function. The insects presented display dazzling optical properties as a result of natural photonic crystals, precise hierarchical patterns that span length scales from nanometers to millimeters, and formidable defense mechanisms that deploy an arsenal of chemical weaponry. Successful mimicry of these adaptations may facilitate technological solutions to as wide a range of problems as they solve in the insects that originated them.
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Affiliation(s)
- Thomas B H Schroeder
- Department of Chemical Engineering, University of Michigan, 2300 Hayward Street, Ann Arbor, MI, 48109, USA
- Adolphe Merkle Institute, University of Fribourg, Chemin des Verdiers 4, 1700, Fribourg, Switzerland
| | - Jared Houghtaling
- Adolphe Merkle Institute, University of Fribourg, Chemin des Verdiers 4, 1700, Fribourg, Switzerland
- Department of Biomedical Engineering, University of Michigan, 2200 Bonisteel Boulevard, Ann Arbor, MI, 48109, USA
| | - Bodo D Wilts
- Adolphe Merkle Institute, University of Fribourg, Chemin des Verdiers 4, 1700, Fribourg, Switzerland
| | - Michael Mayer
- Adolphe Merkle Institute, University of Fribourg, Chemin des Verdiers 4, 1700, Fribourg, Switzerland
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Tennenbaum M, Fernandez-Nieves A. Activity-driven changes in the mechanical properties of fire ant aggregations. Phys Rev E 2017; 96:052601. [PMID: 29347661 DOI: 10.1103/physreve.96.052601] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2017] [Indexed: 11/07/2022]
Abstract
Fire ant aggregations are active materials composed of individual constituents that are able to transform internal energy into work. We find using rheology and direct visualization that the aggregation undergoes activity cycles that affect the mechanical properties of the system. When the activity is high, the aggregation approximately equally stores and dissipates energy, it is more homogeneous, and exerts a high outward force. When the activity is low, the aggregation is predominantly elastic, it is more heterogeneous, and it exerts a small outward force. We rationalize our results using a simple kinetic model where the number of active ants within the aggregation is the essential quantity.
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Affiliation(s)
- Michael Tennenbaum
- School of Physics, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
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Ant Droplet Dynamics Evolve via Individual Decision-Making. Sci Rep 2017; 7:14877. [PMID: 29093518 PMCID: PMC5666022 DOI: 10.1038/s41598-017-13775-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2017] [Accepted: 10/02/2017] [Indexed: 11/08/2022] Open
Abstract
The droplets of a set of ants were studied while they constructed a bridge. A droplet is a group of ants derived from a larger group. Several experimental studies have revealed the droplet dynamics of ants that resemble the self-organising characteristics that are displayed in their physico-chemical systems. However, little is known regarding how these typical behaviours emerge from individual decision-making. In this study, I developed an agent-based model where artificial ants aggregated, thereby resulting in chain and droplet growth. In my proposed model, the agents tuned their weight thresholds according to the local pattern stability and propagation of negative information. As a result, it was revealed that the droplet dynamics of my proposed model partly matched the time series of droplets of real ants, as demonstrated in previous experimental studies that included the fluctuation function and interdrop increments that followed a scale-free distribution.
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