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Puzanskiy RK, Romanyuk DA, Kirpichnikova AA, Yemelyanov VV, Shishova MF. Plant Heterotrophic Cultures: No Food, No Growth. PLANTS (BASEL, SWITZERLAND) 2024; 13:277. [PMID: 38256830 PMCID: PMC10821431 DOI: 10.3390/plants13020277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2023] [Revised: 01/10/2024] [Accepted: 01/15/2024] [Indexed: 01/24/2024]
Abstract
Plant cells are capable of uptaking exogenous organic substances. This inherited trait allows the development of heterotrophic cell cultures in various plants. The most common of them are Nicotiana tabacum and Arabidopsis thaliana. Plant cells are widely used in academic studies and as factories for valuable substance production. The repertoire of compounds supporting the heterotrophic growth of plant cells is limited. The best growth of cultures is ensured by oligosaccharides and their cleavage products. Primarily, these are sucrose, raffinose, glucose and fructose. Other molecules such as glycerol, carbonic acids, starch, and mannitol have the ability to support growth occasionally, or in combination with another substrate. Culture growth is accompanied by processes of specialization, such as elongation growth. This determines the pattern of the carbon budget. Culture ageing is closely linked to substrate depletion, changes in medium composition, and cell physiological rearrangements. A lack of substrate leads to starvation, which results in a decrease in physiological activity and the mobilization of resources, and finally in the loss of viability. The cause of the instability of cultivated cells may be the non-optimal metabolism under cultural conditions or the insufficiency of internal regulation.
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Affiliation(s)
- Roman K. Puzanskiy
- Laboratory of Analytical Phytochemistry, Komarov Botanical Institute of the Russian Academy of Sciences, 197022 St. Petersburg, Russia;
| | - Daria A. Romanyuk
- Laboratory of Genetics of Plant-Microbe Interactions, All-Russia Research Institute for Agricultural Microbiology, 196608 St. Petersburg, Russia;
| | | | - Vladislav V. Yemelyanov
- Faculty of Biology, St. Petersburg State University, 199034 St. Petersburg, Russia; (A.A.K.); (V.V.Y.)
| | - Maria F. Shishova
- Faculty of Biology, St. Petersburg State University, 199034 St. Petersburg, Russia; (A.A.K.); (V.V.Y.)
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2
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Moing A, Berton T, Roch L, Diarrassouba S, Bernillon S, Arrivault S, Deborde C, Maucourt M, Cabasson C, Bénard C, Prigent S, Jacob D, Gibon Y, Lemaire-Chamley M. Multi-omics quantitative data of tomato fruit unveils regulation modes of least variable metabolites. BMC PLANT BIOLOGY 2023; 23:365. [PMID: 37479985 PMCID: PMC10362748 DOI: 10.1186/s12870-023-04370-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Accepted: 07/11/2023] [Indexed: 07/23/2023]
Abstract
BACKGROUND The composition of ripe fruits depends on various metabolites which content evolves greatly throughout fruit development and may be influenced by the environment. The corresponding metabolism regulations have been widely described in tomato during fruit growth and ripening. However, the regulation of other metabolites that do not show large changes in content have scarcely been studied. RESULTS We analysed the metabolites of tomato fruits collected on different trusses during fruit development, using complementary analytical strategies. We identified the 22 least variable metabolites, based on their coefficients of variation. We first verified that they had a limited functional link with the least variable proteins and transcripts. We then posited that metabolite contents could be stabilized through complex regulations and combined their data with the quantitative proteome or transcriptome data, using sparse partial-least-square analyses. This showed shared regulations between several metabolites, which interestingly remained linked to early fruit development. We also examined regulations in specific metabolites using correlations with individual proteins and transcripts, which revealed that a stable metabolite does not always correlate with proteins and transcripts of its known related pathways. CONCLUSIONS The regulation of the least variable metabolites was then interpreted regarding their roles as hubs in metabolic pathways or as signalling molecules.
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Affiliation(s)
- Annick Moing
- INRAE, Univ. Bordeaux, Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
- Bordeaux Metabolome, MetaboHUB, PHENOME-EMPHASIS, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
| | - Thierry Berton
- INRAE, Univ. Bordeaux, Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
| | - Léa Roch
- INRAE, Univ. Bordeaux, Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
| | - Salimata Diarrassouba
- INRAE, Univ. Bordeaux, Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
- Present Address: Laboratoire de Recherche en Sciences Végétales, UMR 5546 UPS/CNRS, Auzeville- Tolosane, F-31320 France
| | - Stéphane Bernillon
- INRAE, Univ. Bordeaux, Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
- Bordeaux Metabolome, MetaboHUB, PHENOME-EMPHASIS, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
- Present Address: INRAE, Mycologie et Sécurité des Aliments, UR 1264, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
| | - Stéphanie Arrivault
- Max Planck Institute of Molecular Plant Physiology, am Muehlenberg 14476, Potsdam-Golm, Germany
| | - Catherine Deborde
- INRAE, Univ. Bordeaux, Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
- Bordeaux Metabolome, MetaboHUB, PHENOME-EMPHASIS, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
- Present Address: INRAE, UR1268 BIA, Centre INRAE Pays de Loire – Nantes, Nantes, F-44000 France
- Present address: INRAE, BIBS Facility, Centre INRAE Pays de Loire – Nantes, Nantes, F-44000 France
| | - Mickaël Maucourt
- INRAE, Univ. Bordeaux, Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
- Bordeaux Metabolome, MetaboHUB, PHENOME-EMPHASIS, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
| | - Cécile Cabasson
- INRAE, Univ. Bordeaux, Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
- Bordeaux Metabolome, MetaboHUB, PHENOME-EMPHASIS, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
| | - Camille Bénard
- INRAE, Univ. Bordeaux, Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
| | - Sylvain Prigent
- INRAE, Univ. Bordeaux, Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
- Bordeaux Metabolome, MetaboHUB, PHENOME-EMPHASIS, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
| | - Daniel Jacob
- INRAE, Univ. Bordeaux, Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
- Bordeaux Metabolome, MetaboHUB, PHENOME-EMPHASIS, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
| | - Yves Gibon
- INRAE, Univ. Bordeaux, Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
- Bordeaux Metabolome, MetaboHUB, PHENOME-EMPHASIS, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
| | - Martine Lemaire-Chamley
- INRAE, Univ. Bordeaux, Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine Bordeaux, Villenave d’Ornon, F-33140 France
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3
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Zhu L, Li Y, Wang C, Wang Z, Cao W, Su J, Peng Y, Li B, Ma B, Ma F, Ruan YL, Li M. The SnRK2.3-AREB1-TST1/2 cascade activated by cytosolic glucose regulates sugar accumulation across tonoplasts in apple and tomato. NATURE PLANTS 2023; 9:951-964. [PMID: 37291399 DOI: 10.1038/s41477-023-01443-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2022] [Accepted: 05/12/2023] [Indexed: 06/10/2023]
Abstract
Soluble sugars are the core components of fruit quality, and the degree of sugar accumulation is largely determined by tonoplast-localized sugar transporters. We previously showed that two classes of tonoplast sugar transporters, MdERDL6 and MdTST1/2, coordinately regulate sugar accumulation in vacuoles. However, the mechanism underlying this coordination remains unknown. Here we discovered that two transcription factors, MdAREB1.1/1.2, regulate MdTST1/2 expression by binding their promoters in apple. The enhanced MdAREB1.1/1.2 expression in MdERDL6-1-overexpression plants resulted in an increase in MdTST1/2 expression and sugar concentration. Further studies established that MdSnRK2.3, whose expression could be regulated by expressing MdERDL6-1, could interact with and phosphorylate MdAREB1.1/1.2, thereby promoting the MdAREB1.1/1.2-mediated transcriptional activation of MdTST1/2. Finally, the orthologous SlAREB1.2 and SlSnRK2.3 exhibited similar functions in tomato fruit as in their apple counterparts. Together, our findings provide insights into the regulatory mechanism of tonoplast sugar transport exerted by SnRK2.3-AREB1-TST1/2 for fruit sugar accumulation.
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Affiliation(s)
- Lingcheng Zhu
- State Key Laboratory of Crop Stress Biology in Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Xianyang, China
- College of Life Science, Northwest A&F University, Xianyang, China
| | - Yanzhen Li
- State Key Laboratory of Crop Stress Biology in Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Xianyang, China
| | - Chengcheng Wang
- State Key Laboratory of Crop Stress Biology in Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Xianyang, China
| | - Zhiqi Wang
- State Key Laboratory of Crop Stress Biology in Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Xianyang, China
| | - Wenjing Cao
- State Key Laboratory of Crop Stress Biology in Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Xianyang, China
| | - Jing Su
- State Key Laboratory of Crop Stress Biology in Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Xianyang, China
| | - Yunjing Peng
- State Key Laboratory of Crop Stress Biology in Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Xianyang, China
| | - Baiyun Li
- State Key Laboratory of Crop Stress Biology in Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Xianyang, China
| | - Baiquan Ma
- State Key Laboratory of Crop Stress Biology in Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Xianyang, China
| | - Fengwang Ma
- State Key Laboratory of Crop Stress Biology in Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Xianyang, China.
| | - Yong-Ling Ruan
- State Key Laboratory of Crop Stress Biology in Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Xianyang, China.
- Division of Plant Sciences, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia.
| | - Mingjun Li
- State Key Laboratory of Crop Stress Biology in Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Xianyang, China.
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Unterhauser J, Ahammer L, Rainer T, Eidelpes R, Führer S, Nothegger B, Covaciu CE, Cova V, Kamenik AS, Liedl KR, Müller T, Breuker K, Eisendle K, Reider N, Letschka T, Tollinger M. Covalent polyphenol modification of a reactive cysteine in the major apple allergen Mal d 1. Food Chem 2023; 410:135374. [PMID: 36608553 DOI: 10.1016/j.foodchem.2022.135374] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Revised: 12/29/2022] [Accepted: 12/30/2022] [Indexed: 01/02/2023]
Abstract
Naturally occurring polyphenols can modify the molecular properties of food allergens. For the major apple allergen Mal d 1 it has been postulated that chemical reactions with polyphenols cause permanent changes in the tertiary structure, causing a loss of conformational IgE epitopes and reducing allergenicity. In our study, we investigated the effect that reactions with oxidized polyphenols have on the structure of Mal d 1 by mass spectrometry and NMR spectroscopy. We showed that a surface-exposed cysteine residue in this allergen spontaneously reacts with oxidized polyphenols under formation of a defined covalent adduct. Chemical modification of Mal d 1 did not destabilize or perturb the three-dimensional fold, nor did it interfere with ligand binding to its internal pocket. A structural model of the chemically modified apple allergen is presented, which reveals that the bound polyphenol partially covers a conformational IgE epitope on the protein surface.
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Affiliation(s)
- Jana Unterhauser
- Institute of Organic Chemistry, Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria
| | - Linda Ahammer
- Institute of Organic Chemistry, Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria
| | - Tobias Rainer
- Institute of Organic Chemistry, Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria
| | - Reiner Eidelpes
- Institute of Organic Chemistry, Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria
| | - Sebastian Führer
- Institute of Organic Chemistry, Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria
| | - Bettina Nothegger
- Department of Dermatology, Venerology and Allergology, Medical University of Innsbruck, Innsbruck, Austria
| | - Claudia E Covaciu
- Department of Dermatology, Venerology and Allergology, Central Teaching Hospital, Bolzano/Bozen, Italy
| | - Valentina Cova
- Department of Molecular Biology and Microbiology, Laimburg Research Centre, Ora/Auer, Italy
| | - Anna S Kamenik
- Institute of General, Inorganic and Theoretical Chemistry, Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria
| | - Klaus R Liedl
- Institute of General, Inorganic and Theoretical Chemistry, Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria
| | - Thomas Müller
- Institute of Organic Chemistry, Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria
| | - Kathrin Breuker
- Institute of Organic Chemistry, Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria
| | - Klaus Eisendle
- Department of Dermatology, Venerology and Allergology, Central Teaching Hospital, Bolzano/Bozen, Italy
| | - Norbert Reider
- Department of Dermatology, Venerology and Allergology, Medical University of Innsbruck, Innsbruck, Austria
| | - Thomas Letschka
- Department of Molecular Biology and Microbiology, Laimburg Research Centre, Ora/Auer, Italy.
| | - Martin Tollinger
- Institute of Organic Chemistry, Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria.
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5
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Differences in total phenolics, antioxidant activity and metabolic characteristics in peach fruits at different stages of ripening. Lebensm Wiss Technol 2023. [DOI: 10.1016/j.lwt.2023.114586] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/27/2023]
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Li J, Liu X, Xu L, Li W, Yao Q, Yin X, Wang Q, Tan W, Xing W, Liu D. Low nitrogen stress-induced transcriptome changes revealed the molecular response and tolerance characteristics in maintaining the C/N balance of sugar beet ( Beta vulgaris L.). FRONTIERS IN PLANT SCIENCE 2023; 14:1164151. [PMID: 37152145 PMCID: PMC10160481 DOI: 10.3389/fpls.2023.1164151] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/12/2023] [Accepted: 03/31/2023] [Indexed: 05/09/2023]
Abstract
Nitrogen (N) is an essential macronutrient for plants, acting as a common limiting factor for crop yield. The application of nitrogen fertilizer is related to the sustainable development of both crops and the environment. To further explore the molecular response of sugar beet under low nitrogen (LN) supply, transcriptome analysis was performed on the LN-tolerant germplasm '780016B/12 superior'. In total, 580 differentially expressed genes (DEGs) were identified in leaves, and 1,075 DEGs were identified in roots (log2 |FC| ≥ 1; q value < 0.05). Gene Ontology (GO), protein-protein interaction (PPI), and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses clarified the role and relationship of DEGs under LN stress. Most of the downregulated DEGs were closely related to "photosynthesis" and the metabolism of "photosynthesis-antenna proteins", "carbon", "nitrogen", and "glutathione", while the upregulated DEGs were involved in flavonoid and phenylalanine biosynthesis. For example, GLUDB (glutamate dehydrogenase B) was identified as a key downregulated gene, linking carbon, nitrogen, and glutamate metabolism. Thus, low nitrogen-tolerant sugar beet reduced energy expenditure mainly by reducing the synthesis of energy-consuming amino acids, which in turn improved tolerance to low nitrogen stress. The glutathione metabolism biosynthesis pathway was promoted to quench reactive oxygen species (ROS) and protect cells from oxidative damage. The expression levels of nitrogen assimilation and amino acid transport genes, such as NRT2.5 (high-affinity nitrate transporter), NR (nitrate reductase [NADH]), NIR (ferredoxin-nitrite reductase), GS (glutamine synthetase leaf isozyme), GLUDB, GST (glutathione transferase) and GGT3 (glutathione hydrolase 3) at low nitrogen levels play a decisive role in nitrogen utilization and may affect the conversion of the carbon skeleton. DFRA (dihydroflavonol 4-reductase) in roots was negatively correlated with NIR in leaves (coefficient = -0.98, p < 0.05), suggesting that there may be corresponding remote regulation between "flavonoid biosynthesis" and "nitrogen metabolism" in roots and leaves. FBP (fructose 1,6-bisphosphatase) and PGK (phosphoglycerate kinase) were significantly positively correlated (p < 0.001) with Ci (intercellular CO2 concentration). The reliability and reproducibility of the RNA-seq data were further confirmed by real-time fluorescence quantitative PCR (qRT-PCR) validation of 22 genes (R2 = 0.98). This study reveals possible pivotal genes and metabolic pathways for sugar beet adaptation to nitrogen-deficient environments.
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Affiliation(s)
- Jiajia Li
- National Beet Medium-term Gene Bank, Heilongjiang University, Harbin, China
- Key Laboratory of Sugar Beet Genetics and Breeding, Heilongjiang Province Common College/College of Advanced agriculture and ecological environment, Heilongjiang University, Harbin, China
| | - Xinyu Liu
- National Beet Medium-term Gene Bank, Heilongjiang University, Harbin, China
- Key Laboratory of Sugar Beet Genetics and Breeding, Heilongjiang Province Common College/College of Advanced agriculture and ecological environment, Heilongjiang University, Harbin, China
- Key Laboratory of Molecular Biology, School of Life Sciences, Heilongjiang University, Harbin, China
| | - Lingqing Xu
- National Beet Medium-term Gene Bank, Heilongjiang University, Harbin, China
- Key Laboratory of Sugar Beet Genetics and Breeding, Heilongjiang Province Common College/College of Advanced agriculture and ecological environment, Heilongjiang University, Harbin, China
| | - Wangsheng Li
- National Beet Medium-term Gene Bank, Heilongjiang University, Harbin, China
- Key Laboratory of Sugar Beet Genetics and Breeding, Heilongjiang Province Common College/College of Advanced agriculture and ecological environment, Heilongjiang University, Harbin, China
| | - Qi Yao
- National Beet Medium-term Gene Bank, Heilongjiang University, Harbin, China
- Key Laboratory of Sugar Beet Genetics and Breeding, Heilongjiang Province Common College/College of Advanced agriculture and ecological environment, Heilongjiang University, Harbin, China
- Key Laboratory of Molecular Biology, School of Life Sciences, Heilongjiang University, Harbin, China
| | - Xilong Yin
- National Beet Medium-term Gene Bank, Heilongjiang University, Harbin, China
- Key Laboratory of Sugar Beet Genetics and Breeding, Heilongjiang Province Common College/College of Advanced agriculture and ecological environment, Heilongjiang University, Harbin, China
| | - Qiuhong Wang
- National Beet Medium-term Gene Bank, Heilongjiang University, Harbin, China
- Key Laboratory of Sugar Beet Genetics and Breeding, Heilongjiang Province Common College/College of Advanced agriculture and ecological environment, Heilongjiang University, Harbin, China
| | - Wenbo Tan
- National Beet Medium-term Gene Bank, Heilongjiang University, Harbin, China
- Key Laboratory of Sugar Beet Genetics and Breeding, Heilongjiang Province Common College/College of Advanced agriculture and ecological environment, Heilongjiang University, Harbin, China
| | - Wang Xing
- National Beet Medium-term Gene Bank, Heilongjiang University, Harbin, China
- Key Laboratory of Sugar Beet Genetics and Breeding, Heilongjiang Province Common College/College of Advanced agriculture and ecological environment, Heilongjiang University, Harbin, China
- *Correspondence: Dali Liu, ; Wang Xing,
| | - Dali Liu
- National Beet Medium-term Gene Bank, Heilongjiang University, Harbin, China
- Key Laboratory of Sugar Beet Genetics and Breeding, Heilongjiang Province Common College/College of Advanced agriculture and ecological environment, Heilongjiang University, Harbin, China
- *Correspondence: Dali Liu, ; Wang Xing,
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Poucet T, Beauvoit B, González‐Moro MB, Cabasson C, Pétriacq P, Flandin A, Gibon Y, Marino D, Dieuaide‐Noubhani M. Impaired cell growth under ammonium stress explained by modeling the energy cost of vacuole expansion in tomato leaves. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 112:1014-1028. [PMID: 36198049 PMCID: PMC9828129 DOI: 10.1111/tpj.15991] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Revised: 09/20/2022] [Accepted: 09/23/2022] [Indexed: 06/16/2023]
Abstract
Ammonium (NH4 + )-based fertilization efficiently mitigates the adverse effects of nitrogen fertilization on the environment. However, high concentrations of soil NH4 + provoke growth inhibition, partly caused by the reduction of cell enlargement and associated with modifications of cell composition, such as an increase of sugars and a decrease in organic acids. Cell expansion depends largely on the osmotic-driven enlargement of the vacuole. However, the involvement of subcellular compartmentation in the adaptation of plants to ammonium nutrition has received little attention, until now. To investigate this, tomato (Solanum lycopersicum) plants were cultivated under nitrate and ammonium nutrition and the fourth leaf was harvested at seven developmental stages. The vacuolar expansion was monitored and metabolites and inorganic ion contents, together with intracellular pH, were determined. A data-constrained model was constructed to estimate subcellular concentrations of major metabolites and ions. It was first validated at the three latter developmental stages by comparison with subcellular concentrations obtained experimentally using non-aqueous fractionation. Then, the model was used to estimate the subcellular concentrations at the seven developmental stages and the net vacuolar uptake of solutes along the developmental series. Our results showed ammonium nutrition provokes an acidification of the vacuole and a reduction in the flux of solutes into the vacuoles. Overall, analysis of the subcellular compartmentation reveals a mechanism behind leaf growth inhibition under ammonium stress linked to the higher energy cost of vacuole expansion, as a result of alterations in pH, the inhibition of glycolysis routes and the depletion of organic acids.
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Affiliation(s)
- Théo Poucet
- Department of Plant Biology and EcologyUniversity of the Basque Country (UPV/EHU)E‐48940LeioaSpain
- Université de Bordeaux, INRAE, UMR Biologie du Fruit et PathologieVillenave d'Ornon33140France
| | - Bertrand Beauvoit
- Université de Bordeaux, INRAE, UMR Biologie du Fruit et PathologieVillenave d'Ornon33140France
| | | | - Cécile Cabasson
- Université de Bordeaux, INRAE, UMR Biologie du Fruit et PathologieVillenave d'Ornon33140France
- Bordeaux Metabolome, MetaboHUBPHENOME‐EMPHASISVillenave d'Ornon33140France
| | - Pierre Pétriacq
- Université de Bordeaux, INRAE, UMR Biologie du Fruit et PathologieVillenave d'Ornon33140France
- Bordeaux Metabolome, MetaboHUBPHENOME‐EMPHASISVillenave d'Ornon33140France
| | - Amélie Flandin
- Université de Bordeaux, INRAE, UMR Biologie du Fruit et PathologieVillenave d'Ornon33140France
- Bordeaux Metabolome, MetaboHUBPHENOME‐EMPHASISVillenave d'Ornon33140France
| | - Yves Gibon
- Université de Bordeaux, INRAE, UMR Biologie du Fruit et PathologieVillenave d'Ornon33140France
- Bordeaux Metabolome, MetaboHUBPHENOME‐EMPHASISVillenave d'Ornon33140France
| | - Daniel Marino
- Department of Plant Biology and EcologyUniversity of the Basque Country (UPV/EHU)E‐48940LeioaSpain
- Ikerbasque, Basque Foundation for ScienceE‐48011BilbaoSpain
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8
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Li Y, Jian Y, Mao Y, Meng F, Shao Z, Wang T, Zheng J, Wang Q, Liu L. "Omics" insights into plastid behavior toward improved carotenoid accumulation. FRONTIERS IN PLANT SCIENCE 2022; 13:1001756. [PMID: 36275568 PMCID: PMC9583013 DOI: 10.3389/fpls.2022.1001756] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/24/2022] [Accepted: 09/21/2022] [Indexed: 06/16/2023]
Abstract
Plastids are a group of diverse organelles with conserved carotenoids synthesizing and sequestering functions in plants. They optimize the carotenoid composition and content in response to developmental transitions and environmental stimuli. In this review, we describe the turbulence and reforming of transcripts, proteins, and metabolic pathways for carotenoid metabolism and storage in various plastid types upon organogenesis and external influences, which have been studied using approaches including genomics, transcriptomics, proteomics, and metabonomics. Meanwhile, the coordination of plastid signaling and carotenoid metabolism including the effects of disturbed carotenoid biosynthesis on plastid morphology and function are also discussed. The "omics" insight extends our understanding of the interaction between plastids and carotenoids and provides significant implications for designing strategies for carotenoid-biofortified crops.
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Affiliation(s)
- Yuanyuan Li
- Key Laboratory of Horticultural Plant Growth and Development, Ministry of Agriculture, Department of Horticulture, Zhejiang University, Hangzhou, China
| | - Yue Jian
- Key Laboratory of Horticultural Plant Growth and Development, Ministry of Agriculture, Department of Horticulture, Zhejiang University, Hangzhou, China
| | - Yuanyu Mao
- Key Laboratory of Horticultural Plant Growth and Development, Ministry of Agriculture, Department of Horticulture, Zhejiang University, Hangzhou, China
| | - Fanliang Meng
- Key Laboratory of Horticultural Plant Growth and Development, Ministry of Agriculture, Department of Horticulture, Zhejiang University, Hangzhou, China
| | - Zhiyong Shao
- Key Laboratory of Horticultural Plant Growth and Development, Ministry of Agriculture, Department of Horticulture, Zhejiang University, Hangzhou, China
| | - Tonglin Wang
- Hangzhou Academy of Agricultural Sciences, Hangzhou, China
| | - Jirong Zheng
- Hangzhou Academy of Agricultural Sciences, Hangzhou, China
| | - Qiaomei Wang
- Key Laboratory of Horticultural Plant Growth and Development, Ministry of Agriculture, Department of Horticulture, Zhejiang University, Hangzhou, China
| | - Lihong Liu
- Key Laboratory of Horticultural Plant Growth and Development, Ministry of Agriculture, Department of Horticulture, Zhejiang University, Hangzhou, China
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9
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Destailleur A, Poucet T, Cabasson C, Alonso AP, Cocuron JC, Larbat R, Vercambre G, Colombié S, Petriacq P, Andrieu MH, Beauvoit B, Gibon Y, Dieuaide-Noubhani M. The Evolution of Leaf Function during Development Is Reflected in Profound Changes in the Metabolic Composition of the Vacuole. Metabolites 2021; 11:metabo11120848. [PMID: 34940606 PMCID: PMC8707551 DOI: 10.3390/metabo11120848] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Revised: 11/30/2021] [Accepted: 12/02/2021] [Indexed: 11/16/2022] Open
Abstract
During its development, the leaf undergoes profound metabolic changes to ensure, among other things, its growth. The subcellular metabolome of tomato leaves was studied at four stages of leaf development, with a particular emphasis on the composition of the vacuole, a major actor of cell growth. For this, leaves were collected at different positions of the plant, corresponding to different developmental stages. Coupling cytology approaches to non-aqueous cell fractionation allowed to estimate the subcellular concentrations of major compounds in the leaves. The results showed major changes in the composition of the vacuole across leaf development. Thus, sucrose underwent a strong allocation, being mostly located in the vacuole at the beginning of development and in the cytosol at maturity. Furthermore, these analyses revealed that the vacuole, rather rich in secondary metabolites and sugars in the growth phases, accumulated organic acids thereafter. This result suggests that the maintenance of the osmolarity of the vacuole of mature leaves would largely involve inorganic molecules.
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Affiliation(s)
- Alice Destailleur
- UMR Biologie du Fruit et Pathologie, Université de Bordeaux, INRAE, F-33140 Villenave d’Ornon, France; (A.D.); (T.P.); (C.C.); (S.C.); (P.P.); (M.H.A.); (B.B.); (Y.G.)
| | - Théo Poucet
- UMR Biologie du Fruit et Pathologie, Université de Bordeaux, INRAE, F-33140 Villenave d’Ornon, France; (A.D.); (T.P.); (C.C.); (S.C.); (P.P.); (M.H.A.); (B.B.); (Y.G.)
| | - Cécile Cabasson
- UMR Biologie du Fruit et Pathologie, Université de Bordeaux, INRAE, F-33140 Villenave d’Ornon, France; (A.D.); (T.P.); (C.C.); (S.C.); (P.P.); (M.H.A.); (B.B.); (Y.G.)
- Bordeaux Metabolome, MetaboHUB, PHENOME-EMPHASIS, F-33140 Villenave d’Ornon, France
| | - Ana Paula Alonso
- Department of Biological Sciences, BioDiscovery Institute, University of North Texas, Denton, TX 76203, USA;
| | | | - Romain Larbat
- LAE, Université de Lorraine, INRAE, F-54000 Nancy, France;
| | - Gilles Vercambre
- Plants and Cropping Systems in Horticulture, INRAE, F-84914 Avignon, France;
| | - Sophie Colombié
- UMR Biologie du Fruit et Pathologie, Université de Bordeaux, INRAE, F-33140 Villenave d’Ornon, France; (A.D.); (T.P.); (C.C.); (S.C.); (P.P.); (M.H.A.); (B.B.); (Y.G.)
| | - Pierre Petriacq
- UMR Biologie du Fruit et Pathologie, Université de Bordeaux, INRAE, F-33140 Villenave d’Ornon, France; (A.D.); (T.P.); (C.C.); (S.C.); (P.P.); (M.H.A.); (B.B.); (Y.G.)
- Bordeaux Metabolome, MetaboHUB, PHENOME-EMPHASIS, F-33140 Villenave d’Ornon, France
| | - Marie Hélène Andrieu
- UMR Biologie du Fruit et Pathologie, Université de Bordeaux, INRAE, F-33140 Villenave d’Ornon, France; (A.D.); (T.P.); (C.C.); (S.C.); (P.P.); (M.H.A.); (B.B.); (Y.G.)
| | - Bertrand Beauvoit
- UMR Biologie du Fruit et Pathologie, Université de Bordeaux, INRAE, F-33140 Villenave d’Ornon, France; (A.D.); (T.P.); (C.C.); (S.C.); (P.P.); (M.H.A.); (B.B.); (Y.G.)
| | - Yves Gibon
- UMR Biologie du Fruit et Pathologie, Université de Bordeaux, INRAE, F-33140 Villenave d’Ornon, France; (A.D.); (T.P.); (C.C.); (S.C.); (P.P.); (M.H.A.); (B.B.); (Y.G.)
- Bordeaux Metabolome, MetaboHUB, PHENOME-EMPHASIS, F-33140 Villenave d’Ornon, France
| | - Martine Dieuaide-Noubhani
- UMR Biologie du Fruit et Pathologie, Université de Bordeaux, INRAE, F-33140 Villenave d’Ornon, France; (A.D.); (T.P.); (C.C.); (S.C.); (P.P.); (M.H.A.); (B.B.); (Y.G.)
- Correspondence:
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10
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Wang F, Ge S, Xu X, Xing Y, Du X, Zhang X, Lv M, Liu J, Zhu Z, Jiang Y. Multiomics Analysis Reveals New Insights into the Apple Fruit Quality Decline under High Nitrogen Conditions. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2021; 69:5559-5572. [PMID: 33945277 DOI: 10.1021/acs.jafc.1c01548] [Citation(s) in RCA: 33] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Excessive application of nitrogen (N) fertilizer is common in Chinese apple production. High N reduced the contents of soluble sugar and total flavonoids by 16.05 and 19.01%, respectively, resulting in poor fruit quality. Moreover, high N increased the total N and decreased the total C and C/N ratio of apple fruits. On the basis of the transcriptomic, proteomic, and metabolomic analyses, the global network was revealed. High N inhibited the accumulation of carbohydrates (sucrose, glucose, and trehalose) and flavonoids (rhamnetin-3-O-rutinoside, rutin, and trihydroxyisoflavone-7-O-galactoside) in fruits, and more C skeletons were used to synthesize amino acids and their derivatives (especially low C/N ratio, e.g., arginine) to be transferred to N metabolism. This study revealed new insights into the decline in soluble sugar and flavonoids caused by high N, and hub genes (MD07G1172700, MD05G1222800, MD16G1227200, MD01G1174400, and MD02G1207200) and hub proteins (PFK, gapN, and HK) were obtained.
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Affiliation(s)
- Fen Wang
- State Key Laboratory of Crop Biology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an 271018, Shandong, China
| | - Shunfeng Ge
- State Key Laboratory of Crop Biology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an 271018, Shandong, China
| | - Xinxiang Xu
- State Key Laboratory of Crop Biology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an 271018, Shandong, China
| | - Yue Xing
- State Key Laboratory of Crop Biology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an 271018, Shandong, China
| | - Xin Du
- State Key Laboratory of Crop Biology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an 271018, Shandong, China
| | - Xin Zhang
- State Key Laboratory of Crop Biology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an 271018, Shandong, China
| | - Mengxue Lv
- State Key Laboratory of Crop Biology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an 271018, Shandong, China
| | - Jingquan Liu
- State Key Laboratory of Crop Biology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an 271018, Shandong, China
| | - Zhanling Zhu
- State Key Laboratory of Crop Biology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an 271018, Shandong, China
| | - Yuanmao Jiang
- State Key Laboratory of Crop Biology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an 271018, Shandong, China
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11
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Walker RP, Battistelli A, Bonghi C, Drincovich MF, Falchi R, Lara MV, Moscatello S, Vizzotto G, Famiani F. Non-structural Carbohydrate Metabolism in the Flesh of Stone Fruits of the Genus Prunus (Rosaceae) - A Review. FRONTIERS IN PLANT SCIENCE 2020; 11:549921. [PMID: 33240291 PMCID: PMC7683422 DOI: 10.3389/fpls.2020.549921] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2020] [Accepted: 09/24/2020] [Indexed: 05/13/2023]
Abstract
Non-structural carbohydrates are abundant constituents of the ripe flesh of all stone fruits. The bulk of their content comprises sucrose, glucose, fructose and sorbitol. However, the abundance of each of these carbohydrates in the flesh differs between species, and also with its stage of development. In this article the import, subcellular compartmentation, contents, metabolism and functions of non-structural carbohydrates in the flesh of commercially cultivated stone fruits of the family Rosaceae are reviewed.
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Affiliation(s)
- Robert P. Walker
- Dipartimento di Scienze Agrarie, Alimentari e Ambientali, Università degli Studi di Perugia, Perugia, Italy
| | - Alberto Battistelli
- Istituto di Ricerca sugli Ecosistemi Terrestri, Consiglio Nazionale delle Ricerche, Porano, Italy
| | - Claudio Bonghi
- Department of Agronomy, Food, Natural Resources, Animals and Environment, University of Padova Agripolis, Legnaro, Italy
| | - María F. Drincovich
- Facultad de Ciencias Bioquímicas y Farmacéuticas, Centro de Estudios Fotosintéticos y Bioquímicos, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de Rosario, Rosario, Argentina
| | - Rachele Falchi
- Department of Agricultural, Food, Environmental and Animal Sciences, University of Udine, Udine, Italy
| | - María V. Lara
- Facultad de Ciencias Bioquímicas y Farmacéuticas, Centro de Estudios Fotosintéticos y Bioquímicos, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de Rosario, Rosario, Argentina
| | - Stefano Moscatello
- Istituto di Ricerca sugli Ecosistemi Terrestri, Consiglio Nazionale delle Ricerche, Porano, Italy
| | - Giannina Vizzotto
- Department of Agricultural, Food, Environmental and Animal Sciences, University of Udine, Udine, Italy
| | - Franco Famiani
- Dipartimento di Scienze Agrarie, Alimentari e Ambientali, Università degli Studi di Perugia, Perugia, Italy
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12
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Steinbeck J, Fuchs P, Negroni YL, Elsässer M, Lichtenauer S, Stockdreher Y, Feitosa-Araujo E, Kroll JB, Niemeier JO, Humberg C, Smith EN, Mai M, Nunes-Nesi A, Meyer AJ, Zottini M, Morgan B, Wagner S, Schwarzländer M. In Vivo NADH/NAD + Biosensing Reveals the Dynamics of Cytosolic Redox Metabolism in Plants. THE PLANT CELL 2020; 32:3324-3345. [PMID: 32796121 PMCID: PMC7534465 DOI: 10.1105/tpc.20.00241] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Revised: 07/13/2020] [Accepted: 08/12/2020] [Indexed: 05/04/2023]
Abstract
NADH and NAD+ are a ubiquitous cellular redox couple. Although the central role of NAD in plant metabolism and its regulatory role have been investigated extensively at the biochemical level, analyzing the subcellular redox dynamics of NAD in living plant tissues has been challenging. Here, we established live monitoring of NADH/NAD+ in plants using the genetically encoded fluorescent biosensor Peredox-mCherry. We established Peredox-mCherry lines of Arabidopsis (Arabidopsis thaliana) and validated the biophysical and biochemical properties of the sensor that are critical for in planta measurements, including specificity, pH stability, and reversibility. We generated an NAD redox atlas of the cytosol of living Arabidopsis seedlings that revealed pronounced differences in NAD redox status between different organs and tissues. Manipulating the metabolic status through dark-to-light transitions, respiratory inhibition, sugar supplementation, and elicitor exposure revealed a remarkable degree of plasticity of the cytosolic NAD redox status and demonstrated metabolic redox coupling between cell compartments in leaves. Finally, we used protein engineering to generate a sensor variant that expands the resolvable NAD redox range. In summary, we established a technique for in planta NAD redox monitoring to deliver important insight into the in vivo dynamics of plant cytosolic redox metabolism.
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Affiliation(s)
- Janina Steinbeck
- Institute of Plant Biology and Biotechnology (IBBP), Westfälische Wilhelms-Universität Münster, D-48143 Münster, Germany
| | - Philippe Fuchs
- Institute of Plant Biology and Biotechnology (IBBP), Westfälische Wilhelms-Universität Münster, D-48143 Münster, Germany
- Institute of Crop Science and Resource Conservation (INRES), Rheinische Friedrich-Wilhelms-Universität Bonn, D-53113 Bonn, Germany
| | - Yuri L Negroni
- Institute of Crop Science and Resource Conservation (INRES), Rheinische Friedrich-Wilhelms-Universität Bonn, D-53113 Bonn, Germany
- Department of Biology, University of Padova, 35131 Padova, Italy
| | - Marlene Elsässer
- Institute of Plant Biology and Biotechnology (IBBP), Westfälische Wilhelms-Universität Münster, D-48143 Münster, Germany
- Institute of Crop Science and Resource Conservation (INRES), Rheinische Friedrich-Wilhelms-Universität Bonn, D-53113 Bonn, Germany
- Institute for Cellular and Molecular Botany (IZMB), Rheinische Friedrich-Wilhelms-Universität Bonn, D-53115 Bonn, Germany
| | - Sophie Lichtenauer
- Institute of Plant Biology and Biotechnology (IBBP), Westfälische Wilhelms-Universität Münster, D-48143 Münster, Germany
| | - Yvonne Stockdreher
- Institute of Crop Science and Resource Conservation (INRES), Rheinische Friedrich-Wilhelms-Universität Bonn, D-53113 Bonn, Germany
| | - Elias Feitosa-Araujo
- Institute of Plant Biology and Biotechnology (IBBP), Westfälische Wilhelms-Universität Münster, D-48143 Münster, Germany
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
| | - Johanna B Kroll
- Institute of Plant Biology and Biotechnology (IBBP), Westfälische Wilhelms-Universität Münster, D-48143 Münster, Germany
| | - Jan-Ole Niemeier
- Institute of Plant Biology and Biotechnology (IBBP), Westfälische Wilhelms-Universität Münster, D-48143 Münster, Germany
| | - Christoph Humberg
- Institute of Plant Biology and Biotechnology (IBBP), Westfälische Wilhelms-Universität Münster, D-48143 Münster, Germany
| | - Edward N Smith
- Department of Plant Sciences, University of Oxford, Oxford, OX1 3RB, United Kingdom
| | - Marie Mai
- Institute of Biochemistry, Zentrum für Human- und Molekularbiologie (ZHMB), Saarland University, D-66123 Saarbrücken, Germany
| | - Adriano Nunes-Nesi
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
| | - Andreas J Meyer
- Institute of Crop Science and Resource Conservation (INRES), Rheinische Friedrich-Wilhelms-Universität Bonn, D-53113 Bonn, Germany
| | - Michela Zottini
- Department of Biology, University of Padova, 35131 Padova, Italy
| | - Bruce Morgan
- Institute of Biochemistry, Zentrum für Human- und Molekularbiologie (ZHMB), Saarland University, D-66123 Saarbrücken, Germany
| | - Stephan Wagner
- Institute of Plant Biology and Biotechnology (IBBP), Westfälische Wilhelms-Universität Münster, D-48143 Münster, Germany
- Institute of Crop Science and Resource Conservation (INRES), Rheinische Friedrich-Wilhelms-Universität Bonn, D-53113 Bonn, Germany
| | - Markus Schwarzländer
- Institute of Plant Biology and Biotechnology (IBBP), Westfälische Wilhelms-Universität Münster, D-48143 Münster, Germany
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