1
|
Kurita T, Higashi M, Gimenez-Dejoz J, Fujita S, Uji H, Sato H, Numata K. Synthesis of All-Peptide-Based Rotaxane from a Proline-Containing Cyclic Peptide. Biomacromolecules 2024; 25:3661-3670. [PMID: 38807574 DOI: 10.1021/acs.biomac.4c00257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/30/2024]
Abstract
Rotaxane cross-linkers enhance the toughness of the resulting rotaxane cross-linked polymers through a stress dispersion effect, which is attributed to the mobility of the interlocked structure. To date, the compositional diversity of rotaxane cross-linkers has been limited, and the poor compatibility of these cross-linkers with peptides and proteins has made their use in such materials challenging. The synthesis of a rotaxane composed of peptides may result in a biodegradable cross-linker that is compatible with peptides and proteins, allowing the fortification of polypeptides and proteins and ultimately leading to the development of innovative materials that possess excellent mechanical properties and biodegradability. However, the chemical synthesis of all-peptide-based rotaxanes has remained elusive because of the absence of strong binding motifs in peptides, which prevents an axial peptide from penetrating a cyclic peptide. Here, we synthesized all-peptide-based rotaxanes using an active template method for proline-containing cyclic peptides. The results of molecular dynamics simulations suggested that cyclic peptides with an expansive inner cavity and carbonyl oxygens oriented toward the center are favorable for rotaxane synthesis. This rotaxane synthesis method is expected to accelerate the synthesis of peptides and proteins with mechanically interlocked structures, potentially leading to the development of peptide- and protein-based materials with unprecedented functionalities.
Collapse
Affiliation(s)
- Taichi Kurita
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Masahiro Higashi
- Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Joan Gimenez-Dejoz
- Biomacromolecules Research Team, RIKEN Center for Sustainable Resource Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
- Life Sciences Department, Barcelona Supercomputing Center, Jordi Girona 31, 08034 Barcelona, Spain
| | - Seiya Fujita
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Hirotaka Uji
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Hirofumi Sato
- Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
- Fukui Institute for Fundamental Chemistry, Kyoto University, Takano-Nishibiraki-cho 34-4, Sakyou-ku, Kyoto 606-8103, Japan
| | - Keiji Numata
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
- Biomacromolecules Research Team, RIKEN Center for Sustainable Resource Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
- Institute for Advanced Biosciences, Keio University, Nipponkoku 403-1, Daihouji, Tsuruoka, Yamagata 997-0017, Japan
| |
Collapse
|
2
|
Borsley S, Leigh DA, Roberts BMW. Molecular Ratchets and Kinetic Asymmetry: Giving Chemistry Direction. Angew Chem Int Ed Engl 2024; 63:e202400495. [PMID: 38568047 DOI: 10.1002/anie.202400495] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Indexed: 05/03/2024]
Abstract
Over the last two decades ratchet mechanisms have transformed the understanding and design of stochastic molecular systems-biological, chemical and physical-in a move away from the mechanical macroscopic analogies that dominated thinking regarding molecular dynamics in the 1990s and early 2000s (e.g. pistons, springs, etc), to the more scale-relevant concepts that underpin out-of-equilibrium research in the molecular sciences today. Ratcheting has established molecular nanotechnology as a research frontier for energy transduction and metabolism, and has enabled the reverse engineering of biomolecular machinery, delivering insights into how molecules 'walk' and track-based synthesisers operate, how the acceleration of chemical reactions enables energy to be transduced by catalysts (both motor proteins and synthetic catalysts), and how dynamic systems can be driven away from equilibrium through catalysis. The recognition of molecular ratchet mechanisms in biology, and their invention in synthetic systems, is proving significant in areas as diverse as supramolecular chemistry, systems chemistry, dynamic covalent chemistry, DNA nanotechnology, polymer and materials science, molecular biology, heterogeneous catalysis, endergonic synthesis, the origin of life, and many other branches of chemical science. Put simply, ratchet mechanisms give chemistry direction. Kinetic asymmetry, the key feature of ratcheting, is the dynamic counterpart of structural asymmetry (i.e. chirality). Given the ubiquity of ratchet mechanisms in endergonic chemical processes in biology, and their significance for behaviour and function from systems to synthesis, it is surely just as fundamentally important. This Review charts the recognition, invention and development of molecular ratchets, focussing particularly on the role for which they were originally envisaged in chemistry, as design elements for molecular machinery. Different kinetically asymmetric systems are compared, and the consequences of their dynamic behaviour discussed. These archetypal examples demonstrate how chemical systems can be driven inexorably away from equilibrium, rather than relax towards it.
Collapse
Affiliation(s)
- Stefan Borsley
- Department of Chemistry, The University of Manchester, Oxford Road, M13 9PL, Manchester, United Kingdom
| | - David A Leigh
- Department of Chemistry, The University of Manchester, Oxford Road, M13 9PL, Manchester, United Kingdom
| | - Benjamin M W Roberts
- Department of Chemistry, The University of Manchester, Oxford Road, M13 9PL, Manchester, United Kingdom
| |
Collapse
|
3
|
Capocasa G, Frateloreto F, Valentini M, Di Stefano S. Molecular entanglement can strongly increase basicity. Commun Chem 2024; 7:116. [PMID: 38806668 PMCID: PMC11133330 DOI: 10.1038/s42004-024-01205-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Accepted: 05/17/2024] [Indexed: 05/30/2024] Open
Abstract
Brønsted basicity is a fundamental chemical property featured by several kinds of inorganic and organic compounds. In this Review, we treat a particularly high basicity resulting from the mechanical entanglement involving two or more molecular subunits in catenanes and rotaxanes. Such entanglement allows a number of basic sites to be in close proximity with each other, highly increasing the proton affinity in comparison with the corresponding, non-entangled counterparts up to obtain superbases, properly defined as mechanically interlocked superbases. In the following pages, the development of this kind of superbases will be described with a historical perusal, starting from the initial, serendipitous findings up to the most recent reports where the strong basic property of entangled molecular units is the object of a rational design.
Collapse
Affiliation(s)
- Giorgio Capocasa
- Department of Chemistry Università di Roma La Sapienza and ISB-CNR Sede Secondaria di Roma - Meccanismi di Reazione P.le A. Moro 5, I-00185, Roma, Italy
| | - Federico Frateloreto
- Department of Chemistry Università di Roma La Sapienza and ISB-CNR Sede Secondaria di Roma - Meccanismi di Reazione P.le A. Moro 5, I-00185, Roma, Italy
| | - Matteo Valentini
- Department of Chemistry Università di Roma La Sapienza and ISB-CNR Sede Secondaria di Roma - Meccanismi di Reazione P.le A. Moro 5, I-00185, Roma, Italy
| | - Stefano Di Stefano
- Department of Chemistry Università di Roma La Sapienza and ISB-CNR Sede Secondaria di Roma - Meccanismi di Reazione P.le A. Moro 5, I-00185, Roma, Italy.
| |
Collapse
|
4
|
Saady A, Malcolm GK, Fitzpatrick MP, Pairault N, Tizzard GJ, Mohammed S, Tavassoli A, Goldup SM. A Platform Approach to Cleavable Macrocycles for the Controlled Disassembly of Mechanically Caged Molecules. Angew Chem Int Ed Engl 2024; 63:e202400344. [PMID: 38276911 DOI: 10.1002/anie.202400344] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Revised: 01/22/2024] [Accepted: 01/22/2024] [Indexed: 01/27/2024]
Abstract
Inspired by interlocked oligonucleotides, peptides and knotted proteins, synthetic systems where a macrocycle cages a bioactive species that is "switched on" by breaking the mechanical bond have been reported. However, to date, each example uses a bespoke chemical design. Here we present a platform approach to mechanically caged structures wherein a single macrocycle precursor is diversified at a late stage to include a range of trigger units that control ring opening in response to enzymatic, chemical, or photochemical stimuli. We also demonstrate that our approach is applicable to other classes of macrocycles suitable for rotaxane and catenane formation.
Collapse
Affiliation(s)
- Abed Saady
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK
| | - Georgia K Malcolm
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK
| | - Matthew P Fitzpatrick
- School of Chemistry, University of Southampton, University Road, Southampton, SO17 1BJ, UK
| | - Noel Pairault
- School of Chemistry, University of Southampton, University Road, Southampton, SO17 1BJ, UK
| | - Graham J Tizzard
- School of Chemistry, University of Southampton, University Road, Southampton, SO17 1BJ, UK
| | - Soran Mohammed
- School of Chemistry, University of Southampton, University Road, Southampton, SO17 1BJ, UK
| | - Ali Tavassoli
- School of Chemistry, University of Southampton, University Road, Southampton, SO17 1BJ, UK
| | - Stephen M Goldup
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK
| |
Collapse
|
5
|
Sangchai T, Al Shehimy S, Penocchio E, Ragazzon G. Artificial Molecular Ratchets: Tools Enabling Endergonic Processes. Angew Chem Int Ed Engl 2023; 62:e202309501. [PMID: 37545196 DOI: 10.1002/anie.202309501] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Revised: 08/03/2023] [Accepted: 08/04/2023] [Indexed: 08/08/2023]
Abstract
Non-equilibrium chemical systems underpin multiple domains of contemporary interest, including supramolecular chemistry, molecular machines, systems chemistry, prebiotic chemistry, and energy transduction. Experimental chemists are now pioneering the realization of artificial systems that can harvest energy away from equilibrium. In this tutorial Review, we provide an overview of artificial molecular ratchets: the chemical mechanisms enabling energy absorption from the environment. By focusing on the mechanism type-rather than the application domain or energy source-we offer a unifying picture of seemingly disparate phenomena, which we hope will foster progress in this fascinating domain of science.
Collapse
Affiliation(s)
- Thitiporn Sangchai
- University of Strasbourg, CNRS, Institut de Science et d'Ingénierie Supramoléculaires (ISIS) UMR 7006, 8 allée Gaspard Monge, 67000, Strasbourg, France
| | - Shaymaa Al Shehimy
- University of Strasbourg, CNRS, Institut de Science et d'Ingénierie Supramoléculaires (ISIS) UMR 7006, 8 allée Gaspard Monge, 67000, Strasbourg, France
| | - Emanuele Penocchio
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, IL, 60208, USA
| | - Giulio Ragazzon
- University of Strasbourg, CNRS, Institut de Science et d'Ingénierie Supramoléculaires (ISIS) UMR 7006, 8 allée Gaspard Monge, 67000, Strasbourg, France
| |
Collapse
|
6
|
Tse YC, Au-Yeung HY. Catenane and Rotaxane Synthesis from Cucurbit[6]uril-Mediated Azide-Alkyne Cycloaddition. Chem Asian J 2023; 18:e202300290. [PMID: 37460745 DOI: 10.1002/asia.202300290] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Revised: 06/29/2023] [Indexed: 08/01/2023]
Abstract
The chemistry of mechanically interlocked molecules (MIMs) such as catenane and rotaxane is full of new opportunities for the presence of a mechanical bond, and the efficient synthesis of these molecules is therefore of fundamental importance in realizing their unique properties and functions. While many different types of preorganizing interactions and covalent bond formation strategies have been exploited in MIMs synthesis, the use of cucurbit[6]uril (CB[6]) in simultaneously templating macrocycle interlocking and catalyzing the covalent formation of the interlocked components is particularly advantageous in accessing high-order catenanes and rotaxanes. In this review, catenane and rotaxane obtained from CB[6]-catalyzed azide-alkyne cycloaddition will be discussed, with special emphasis on the synthetic strategies employed for obtaining complex [n]rotaxanes and [n]catenanes, as well as their properties and functions.
Collapse
Affiliation(s)
- Yuen Cheong Tse
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, P. R. China
| | - Ho Yu Au-Yeung
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, P. R. China
- State Key Laboratory of Synthetic Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, P. R. China
| |
Collapse
|
7
|
Wagay SA, Khan L, Ali R. Recent Advancements in Ion-Pair Receptors. Chem Asian J 2023; 18:e202201080. [PMID: 36412231 DOI: 10.1002/asia.202201080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Revised: 11/18/2022] [Accepted: 11/21/2022] [Indexed: 11/23/2022]
Abstract
Over the past two decades, non-covalent chemistry has introduced various promising artificial receptors and revolutionized the host-guest chemistry. These versatile receptors have particularly been entertained in sensing and recognizing of diverse neutral molecules and/or ionic entities (e. g. anions, cations and ion-pair) of particular interest. Notably, supramolecular chemistry had given birth to a plethora of important molecules, explored in the chemical, biological, environmental, and pharmacological world to resolve the critical issues related to the human health while keeping environmental concerns in mind. Amongst the various types of supramolecular monotopic receptors (anions, cations, and neutral molecules), heteroditopic receptors (ion-pair receptors) consisting of distinct binding sites in one system for both cation and anion, have gained much interest from the scientific community in recent past because of their unique binding abilities. Interestingly, these promising artificial receptors have shown potential applications in sensing, recognition, transport and extraction processes besides their uses in salt/waste purification. Bearing the importance of these systems in mind, we intended to report the recent developments in ion-pair chemistry. Herein, we divided the whole document into three main sections; first one describes the introduction and history of the ion-pairs receptors. The second portion highlights the synthesis and applications of ion-pair receptors in sensing, recognition, molecular machines, photoswitching behaviour, extraction and transport properties, whereas the last part of this manuscript provides concluding remarks as well as future prospects of ion-pair receptors. We hope that this manuscript will be helpful to stimulating researchers around the globe to find out the hidden opportunities in this and related areas.
Collapse
Affiliation(s)
- Shafieq Ahmad Wagay
- Organic and Supramolecular Functional Materials Research Laboratory, Department of Chemistry, Jamia Millia Islamia, Okhla, New Delhi, 110025, India
| | - Lubna Khan
- Organic and Supramolecular Functional Materials Research Laboratory, Department of Chemistry, Jamia Millia Islamia, Okhla, New Delhi, 110025, India
| | - Rashid Ali
- Organic and Supramolecular Functional Materials Research Laboratory, Department of Chemistry, Jamia Millia Islamia, Okhla, New Delhi, 110025, India
| |
Collapse
|
8
|
Jiao Y, Mao H, Qiu Y, Wu G, Chen H, Zhang L, Han H, Li X, Zhao X, Tang C, Chen XY, Feng Y, Stern CL, Wasielewski MR, Stoddart JF. Mechanical Bond-Assisted Full-Spectrum Investigation of Radical Interactions. J Am Chem Soc 2022; 144:23168-23178. [DOI: 10.1021/jacs.2c10882] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Yang Jiao
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Haochuan Mao
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
- Institute for Sustainability and Energy at Northwestern, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Yunyan Qiu
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Guangcheng Wu
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Hongliang Chen
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
- Stoddart Institute of Molecular Science, Department of Chemistry, Zhejiang University, Hangzhou 310027, China
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou 311215, China
| | - Long Zhang
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Han Han
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Xuesong Li
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Xingang Zhao
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Chun Tang
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Xiao-Yang Chen
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Yuanning Feng
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Charlotte L. Stern
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Michael R. Wasielewski
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
- Institute for Sustainability and Energy at Northwestern, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - J. Fraser Stoddart
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
- Stoddart Institute of Molecular Science, Department of Chemistry, Zhejiang University, Hangzhou 310027, China
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou 311215, China
- School of Chemistry, University of New South Wales, Sydney, NSW 2052, Australia
| |
Collapse
|
9
|
Chan MHY, Yam VWW. Toward the Design and Construction of Supramolecular Functional Molecular Materials Based on Metal–Metal Interactions. J Am Chem Soc 2022; 144:22805-22825. [DOI: 10.1021/jacs.2c08551] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Michael Ho-Yeung Chan
- Institute of Molecular Functional Materials, State Key Laboratory of Synthetic Chemistry and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, People’s Republic of China
| | - Vivian Wing-Wah Yam
- Institute of Molecular Functional Materials, State Key Laboratory of Synthetic Chemistry and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, People’s Republic of China
| |
Collapse
|
10
|
Xia X, Zhang S, He X, Zheng F, Lu Q. Molecular necklace strategy for enhancing modulus and toughness of colorless transparent polyimides for cover window application. POLYMER 2022. [DOI: 10.1016/j.polymer.2022.125358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
|
11
|
Li M, Chia XL, Tian C, Zhu Y. Mechanically planar chiral rotaxanes through catalytic desymmetrization. Chem 2022. [DOI: 10.1016/j.chempr.2022.08.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
|
12
|
Binks L, Tian C, Fielden SDP, Vitorica-Yrezabal IJ, Leigh DA. Transamidation-Driven Molecular Pumps. J Am Chem Soc 2022; 144:15838-15844. [PMID: 35979923 PMCID: PMC9446885 DOI: 10.1021/jacs.2c06807] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
We report a new class of synthetic molecular pumps that use a stepwise information ratchet mechanism to achieve the kinetic gating required to sequester their macrocyclic substrates from bulk solution. Threading occurs as a result of active template reactions between the pump terminus amine and an acyl electrophile, whereby the bond-forming reaction is accelerated through the cavity of a crown ether. Carboxylation of the resulting amide results in displacement of the ring to the collection region of the thread. Conversion of the carbamate to a phenolic ester provides an intermediate rotaxane suitable for further pumping cycles. In this way rings can be ratcheted onto a thread from one or both ends of appropriately designed molecular pumps. Each pumping cycle results in one additional ring being added to the thread per terminus acyl group. The absence of pseudorotaxane states ensures that no dethreading of intermediates occurs during the pump operation. This facilitates the loading of different macrocycles in any chosen sequence, illustrated by the pump-mediated synthesis of a [4]rotaxane containing three different macrocycles as a single sequence isomer. A [5]rotaxane synthesized using a dual-opening transamidation pump was structurally characterized by single-crystal X-ray diffraction, revealing a series of stabilizing CH···O interactions between the crown ethers and the polyethylene glycol catchment region of the thread.
Collapse
Affiliation(s)
- Lorna Binks
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Chong Tian
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Stephen D P Fielden
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | | | - David A Leigh
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| |
Collapse
|
13
|
Hasija A, Som S, Chopra D. Investigation of crystal structures, energetics and isostructurality in halogen-substituted phosphoramidates. ACTA CRYSTALLOGRAPHICA SECTION B, STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS 2022; 78:179-194. [PMID: 35411857 DOI: 10.1107/s2052520622000889] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2021] [Accepted: 01/24/2022] [Indexed: 06/14/2023]
Abstract
A total of 14 compounds, one unsubstituted and 13 halogen-substituted phosphoramidates, have been synthesized from unsubstituted and halogenated (fluoro-, difluoro-, chloro-, bromo-, iodo-substituted) aniline and diphenyl phosphoryl chloride to investigate their molecular assembly in solid-state structures. Amongst them, six groups were formed based on similarities in unit-cell dimensions, space group and molecular assembly of the crystal. The analysis reveals that all the crystal structures contain robust N-H...O hydrogen bonds which are the primary building blocks with ancillary interactions such as C-H...O, C-H...π, C-H...F/Cl/Br/I, F...F, F...π, I...π, Br...π, I...O and Br...O. The role of short and directional C-H...O and C-H...π interactions providing significant stabilization to the densely packed crystalline arrangement is discussed. The contribution of these interactions in stabilizing the crystalline assembly was deduced via computing total interaction energy between dimers and the overall lattice energies using the computer programs Crystal Explorer 17.5 and PIXELC, respectively. Additionally, the occurrence of 3D isostructurality in phosphoradimates and their halogenated analogs was investigated using the XPac program. A comparison of the magnitudes of the torsion angles in the compounds substantiates the role of conformational flexibility in the solid state.
Collapse
Affiliation(s)
- Avantika Hasija
- Department of Chemistry, Indian Institute of Science Education and Research, Bhopal By-Pass Road, Bhopal, Madhya Pradesh 462066, India
| | - Shubham Som
- Department of Chemistry, Indian Institute of Science Education and Research, Bhopal By-Pass Road, Bhopal, Madhya Pradesh 462066, India
| | - Deepak Chopra
- Department of Chemistry, Indian Institute of Science Education and Research, Bhopal By-Pass Road, Bhopal, Madhya Pradesh 462066, India
| |
Collapse
|
14
|
Masai H, Oka Y, Terao J. Precision synthesis of linear oligorotaxanes and polyrotaxanes achieving well-defined positions and numbers of cyclic components on the axle. Chem Commun (Camb) 2021; 58:1644-1660. [PMID: 34927653 DOI: 10.1039/d1cc03507j] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Interest in macromolecules has increased because of their functional properties, which can be tuned using precise organic synthetic methods. For example, desired functions have been imparted by controlling the nanoscale structures of such macromolecules. In particular, compounds with interlocked structures, including rotaxanes, have attracted attention because of their unique supramolecular structures. In such supramolecular structures, the mobility and freedom of the macrocycles are restricted by an axle and dependent on those of other macrocycles, which imparts unique functions to these threaded structures. Recently, methods for the ultrafine engineering and synthesis, as well as functions, of "defined" rotaxane structures that are not statistically dispersed on the axle (i.e., control over the number and position of cyclic molecules) have been reported. Various synthetic strategies allow access to such well-defined linear oligo- and polyrotaxanes, including [1]rotaxanes and [n]rotaxanes (mostly n > 3). These state-of-the-art synthetic methods have resulted in unique functions of these oligo-and polyrotaxane materials. Herein, we review the effective synthetic protocols and functions of precisely constructed one-dimensional oligomers and polymers bearing defined threaded structures, and discuss the latest reports and trends.
Collapse
Affiliation(s)
- Hiroshi Masai
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, Japan.
| | - Yuki Oka
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, Japan.
| | - Jun Terao
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, Japan.
| |
Collapse
|
15
|
A chiral interlocking auxiliary strategy for the synthesis of mechanically planar chiral rotaxanes. Nat Chem 2021; 14:179-187. [PMID: 34845345 PMCID: PMC7612332 DOI: 10.1038/s41557-021-00825-9] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Accepted: 09/23/2021] [Indexed: 12/03/2022]
Abstract
Rotaxanes can display molecular chirality solely due to the mechanical bond between the axle and encircling macrocycle without the presence of covalent stereogenic units. However, the synthesis of such molecules remains challenging. We have discovered a combination of reaction partners that function as a chiral interlocking auxiliary to both orientate a macrocycle and, effectively, load it onto a new axle. Here we use these substrates to demonstrate the potential of a chiral interlocking auxiliary strategy for the synthesis of mechanically planar chiral rotaxanes by producing a range of examples in high enantiopurity (93–99% e.e.), including so-called ‘impossible’ rotaxanes whose axles lack any functional groups that would allow their direct synthesis by other means. Intriguingly, by varying the order of bond-forming steps, we can effectively choose which end of an axle the macrocycle is loaded onto, enabling the synthesis of both hands of a single target using the same reactions and building blocks.
Collapse
|
16
|
Gauthier M, Waelès P, Coutrot F. Post-Synthetic Macrocyclization of Rotaxane Building Blocks. Chempluschem 2021; 87:e202100458. [PMID: 34811956 DOI: 10.1002/cplu.202100458] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 11/11/2021] [Indexed: 11/06/2022]
Abstract
Although not often encountered, cyclic interlocked molecules are appealing molecular targets because of their restrained tridimensional structure which is related to both the cyclic and interlocked shapes. Interlocked molecules such as rotaxane building blocks may be good candidates for post-synthetic intramolecular cyclization if the preservation of the mechanical bond ensures the interlocked architecture throughout the reaction. This is obviously the case if the modification does not involve the cleavage of either the macrocycle's main chain or the encircled part of the axle. However, among the post-synthetic reactions, the chemical linkage between two reactive sites belonging to embedded elements of rotaxanes still consists of an underexploited route to interlocked cyclic molecules. This Review lists the rare examples of macrocyclization through chemical connection between reactive sites belonging to a surrounding macrocycle and/or an encircled axle of interlocked rotaxanes.
Collapse
Affiliation(s)
- Maxime Gauthier
- Supramolecular Machines and Architectures Team, IBMM, Univ Montpellier, CNRS, ENSCM, Montpellier, France
| | - Philip Waelès
- Supramolecular Machines and Architectures Team, IBMM, Univ Montpellier, CNRS, ENSCM, Montpellier, France
| | - Frédéric Coutrot
- Supramolecular Machines and Architectures Team, IBMM, Univ Montpellier, CNRS, ENSCM, Montpellier, France
| |
Collapse
|
17
|
Gao X, Cui Z, Shen YR, Liu D, Lin YJ, Jin GX. Synthesis and Near-Infrared Photothermal Conversion of Discrete Supramolecular Topologies Featuring Half-Sandwich [Cp*Rh] Units. J Am Chem Soc 2021; 143:17833-17842. [PMID: 34641681 DOI: 10.1021/jacs.1c09333] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Although a large number of novel supramolecular topologies featuring half-sandwich [Cp*Rh] units have been reported, investigations into the properties of these architectures are astoundingly rare. In addition, the bidentate ligands employed to prepare these species have remained relatively homogeneous (i.e., symmetrical bis(pyri-4-dyl) ligands). To address these paucities in the field, the novel unsymmetrical ligand L2 and the rarely reported pyri-3-dyl ligand L3, all bearing aromatic phenazine groups (an N-heterocyclic analog of anthracene), were synthesized in addition to the common symmetrical pyri-4-dyl L1. [3]Catenane, [2]catenane, and Borromean rings assemblies were constructed successfully by the self-assembly of L1 with different building blocks. Afterward, ligand L2 was applied to prepare two novel molecular-tweezer-like compounds. Lastly, a twisted [2]catenane (relative to the [2]catenane constructed using L1) and a sandwiched metallarectangle were obtained using L3. π-π stacking interactions were observed to play a significant role in stabilizing these topologies, which also promoted nonradiative migration and triggered photothermal conversion in both the solution and the solid state. In the solution state, a clear rule of thumb was derived whereby the NIR photothermal conversion efficiency increased as the π-π stacking increased, and a very high photothermal conversion efficiency (35.5-62.4%) was observed. In addition, this family of half-sandwich-based assemblies also exhibited good photothermal conversion properties in the crystalline and noncrystal powder states. This research provides a novel method to synthesize excellent NIR photothermal conversion materials featuring half-sandwich [Cp*Rh] units and points to potential applications in the near future.
Collapse
Affiliation(s)
- Xiang Gao
- State Key Laboratory of Molecular Engineering of Polymers, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, 2005 Songhu Road, Shanghai 200438, P. R. China
| | - Zheng Cui
- State Key Laboratory of Molecular Engineering of Polymers, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, 2005 Songhu Road, Shanghai 200438, P. R. China
| | - Yue-Rong Shen
- State Key Laboratory of Molecular Engineering of Polymers, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, 2005 Songhu Road, Shanghai 200438, P. R. China
| | - Dong Liu
- State Key Laboratory of Molecular Engineering of Polymers, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, 2005 Songhu Road, Shanghai 200438, P. R. China
| | - Yue-Jian Lin
- State Key Laboratory of Molecular Engineering of Polymers, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, 2005 Songhu Road, Shanghai 200438, P. R. China
| | - Guo-Xin Jin
- State Key Laboratory of Molecular Engineering of Polymers, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, 2005 Songhu Road, Shanghai 200438, P. R. China
| |
Collapse
|
18
|
Sun J, Li W, Hou Y, Zhang X, Gao Z, Wang B, Zhao J. a-PET and Weakened Triplet-Triplet Annihilation Self-Quenching Effects in Benzo-21-Crown-7-Functionalized Diiodo-BODIPY. ACS OMEGA 2021; 6:28356-28365. [PMID: 34723032 PMCID: PMC8552471 DOI: 10.1021/acsomega.1c04540] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Accepted: 10/01/2021] [Indexed: 06/13/2023]
Abstract
Weakening the triplet-triplet annihilation (TTA) self-quenching effect induced by sensitizers remains a tremendous challenge due to the very few investigations carried out on them. Herein, benzo-21-crown-7 (B21C7)-functionalized 2,6-diiodo-1,3,5,7-tetramethyl-8-phenyl-4,4-difluoroboradiazaindacene (DIBDP) was synthesized to investigate the influences of huge bulks and electron-rich cavities of B21C7 moieties on the fluorescence emission and triplet-state lifetimes of DIBDP moieties. Density functional theory (DFT)/time-dependent DFT (TDDFT) computable results preliminarily predicted that B21C7 moieties had influences on the fluorescence emissions of DIBDP moieties but not on their localization of triplet states of B21C7-functionalized DIBDP (B21C7-DIBDP). The UV-vis absorption spectra, fluorescence emission spectra, and cyclic voltammograms verified that there was an electron-transfer process from the B21C7 moiety to the DIBDP moiety in B21C7-DIBDP. However, the calculated results of ΔG CS and E CS values and nanosecond time-resolved transient absorption spectra demonstrated that the electron-transfer process from the B21C7 moiety to the DIBDP moiety in B21C7-DIBDP had direct influences on the fluorescence emission of DIBDP moieties but not on the triplet states of DIBDP moieties. The experimental values of triplet-state lifetimes of B21C7-DIBDP were obviously longer than those of DIBDP at a high concentration (1.0 × 10-5 M); however, the fitted values of intrinsic triplet-state lifetimes of B21C7-DIBDP were slightly greater than those of DIBDP in the same solvent. These results demonstrated that the steric hindrance of B21C7 moieties could weaken the TTA self-quenching effect of DIBDP moieties at a high concentration and the a-PET effect induced a proportion of the produced singlet states of DIBDP moieties and could not emit fluorescence in the form of radiation transition but they could be transformed into triplet states through intersystem crossing (ISC) processes due to the iodine atoms in the DIBDP moiety. The stronger a-PET effects in polar solvents induced smaller fluorescence quantum yields so that more singlet states of DIBDP moieties were transformed into triplet states to weaken the TTA self-quenching effects.
Collapse
Affiliation(s)
- Jifu Sun
- College
of Chemical and Biological Engineering, Shandong University of Science and Technology, J2-424, 579 Qianwangang Road, Qingdao 266590, P. R. China
| | - Weixu Li
- College
of Chemical and Biological Engineering, Shandong University of Science and Technology, J2-424, 579 Qianwangang Road, Qingdao 266590, P. R. China
| | - Yuqi Hou
- State
Key Laboratory of Fine Chemicals, Dalian
University of Technology, 2 Ling-Gong Road, Dalian 116024, P. R. China
| | - Xue Zhang
- State
Key Laboratory of Fine Chemicals, Dalian
University of Technology, 2 Ling-Gong Road, Dalian 116024, P. R. China
| | - Zhongzheng Gao
- College
of Chemical and Biological Engineering, Shandong University of Science and Technology, J2-424, 579 Qianwangang Road, Qingdao 266590, P. R. China
| | - Bo Wang
- College
of Chemical and Biological Engineering, Shandong University of Science and Technology, J2-424, 579 Qianwangang Road, Qingdao 266590, P. R. China
| | - Jianzhang Zhao
- State
Key Laboratory of Fine Chemicals, Dalian
University of Technology, 2 Ling-Gong Road, Dalian 116024, P. R. China
| |
Collapse
|
19
|
Borodin O, Shchukin Y, Robertson CC, Richter S, von Delius M. Self-Assembly of Stimuli-Responsive [2]Rotaxanes by Amidinium Exchange. J Am Chem Soc 2021; 143:16448-16457. [PMID: 34559523 PMCID: PMC8517971 DOI: 10.1021/jacs.1c05230] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
![]()
Advances in supramolecular
chemistry are often underpinned by the
development of fundamental building blocks and methods enabling their
interconversion. In this work, we report the use of an underexplored
dynamic covalent reaction for the synthesis of stimuli-responsive
[2]rotaxanes. The formamidinium moiety lies at the heart of these
mechanically interlocked architectures, because it enables both dynamic
covalent exchange and the binding of simple crown ethers. We demonstrated
that the rotaxane self-assembly follows a unique reaction pathway
and that the complex interplay between crown ether and thread can
be controlled in a transient fashion by addition of base and fuel
acid. Dynamic combinatorial libraries, when exposed to diverse nucleophiles,
revealed a profound stabilizing effect of the mechanical bond as well
as intriguing reactivity differences between seemingly similar [2]rotaxanes.
Collapse
Affiliation(s)
- Oleg Borodin
- Institute of Organic Chemistry, Ulm University, Albert-Einstein-Allee 11, 89081 Ulm, Germany
| | - Yevhenii Shchukin
- Institute of Organic Chemistry, Ulm University, Albert-Einstein-Allee 11, 89081 Ulm, Germany
| | - Craig C Robertson
- Department of Chemistry, University of Sheffield, Brook Hill, Sheffield S3 7HF, U.K
| | - Stefan Richter
- Institute of Organic Chemistry, Ulm University, Albert-Einstein-Allee 11, 89081 Ulm, Germany
| | - Max von Delius
- Institute of Organic Chemistry, Ulm University, Albert-Einstein-Allee 11, 89081 Ulm, Germany
| |
Collapse
|
20
|
Shen Y, Gao X, Cui Z, Jin G. Rational Design and Synthesis of Interlocked [2]Catenanes Featuring
Half‐Sandwich
Cp*Rh/Ir Units and
Pyrene‐Based
Ligands
†. CHINESE J CHEM 2021. [DOI: 10.1002/cjoc.202100546] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Yue‐Rong Shen
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, State Key Laboratory of Molecular Engineering of Polymers Fudan University Shanghai 200438 China
| | - Xiang Gao
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, State Key Laboratory of Molecular Engineering of Polymers Fudan University Shanghai 200438 China
| | - Zheng Cui
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, State Key Laboratory of Molecular Engineering of Polymers Fudan University Shanghai 200438 China
| | - Guo‐Xin Jin
- Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, State Key Laboratory of Molecular Engineering of Polymers Fudan University Shanghai 200438 China
| |
Collapse
|
21
|
Jiao Y, Đorđević L, Mao H, Young RM, Jaynes T, Chen H, Qiu Y, Cai K, Zhang L, Chen XY, Feng Y, Wasielewski MR, Stupp SI, Stoddart JF. A Donor-Acceptor [2]Catenane for Visible Light Photocatalysis. J Am Chem Soc 2021; 143:8000-8010. [PMID: 34028258 DOI: 10.1021/jacs.1c01493] [Citation(s) in RCA: 38] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Colored charge-transfer complexes can be formed by the association between electron-rich donor and electron-deficient acceptor molecules, bringing about the narrowing of HOMO-LUMO energy gaps so that they become capable of harnessing visible light. In an effort to facilitate the use of these widespread, but nonetheless weak, interactions for visible light photocatalysis, it is important to render the interactions strong and robust. Herein, we employ a well-known donor-acceptor [2]catenane-formed by the mechanical interlocking of cyclobis(paraquat-p-phenylene) and 1,5-dinaphtho[38]crown-10-in which the charge-transfer interactions between two 4,4'-bipyridinium and two 1,5-dioxynaphthalene units are enhanced by mechanical bonding, leading to increased absorption of visible light, even at low concentrations in solution. As a result, since this [2]catenane can generate persistent bipyridinium radical cations under continuous visible-light irradiation without the need for additional photosensitizers, it can display good catalytic activity in both photo-reductions and -oxidations, as demonstrated by hydrogen production-in the presence of platinum nanoparticles-and aerobic oxidation of organic sulfides, such as l-methionine, respectively. This research, which highlights the usefulness of nanoconfinement present in mechanically interlocked molecules for the reinforcement of weak interactions, can not only expand the potential of charge-transfer interactions in solar energy conversion and synthetic photocatalysis but also open up new possibilities for the development of active artificial molecular shuttles, switches, and machines.
Collapse
Affiliation(s)
- Yang Jiao
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Luka Đorđević
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States.,Center for Bio-inspired Energy Science, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Haochuan Mao
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States.,Institute for Sustainability and Energy at Northwestern, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Ryan M Young
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States.,Institute for Sustainability and Energy at Northwestern, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Tyler Jaynes
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States.,Center for Bio-inspired Energy Science, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Hongliang Chen
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Yunyan Qiu
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Kang Cai
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Long Zhang
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Xiao-Yang Chen
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Yuanning Feng
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Michael R Wasielewski
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States.,Institute for Sustainability and Energy at Northwestern, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Samuel I Stupp
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States.,Center for Bio-inspired Energy Science, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States.,Department of Materials Science and Engineering, Northwestern University, 2220 Campus Drive, Evanston, Illinois 60208, United States.,Department of Biomedical Engineering, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States.,Department of Medicine, Northwestern University, 676 North St. Clair Street, Chicago, Illinois 60611, United States.,Simpson Querrey Institute, Northwestern University, Chicago, Illinois 60611, United States
| | - J Fraser Stoddart
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States.,School of Chemistry, University of New South Wales, Sydney, NSW 2052, Australia.,Department of Chemistry, Zhejiang University, Hangzhou 310027, China
| |
Collapse
|
22
|
|
23
|
Bazzoni M, Andreoni L, Silvi S, Credi A, Cera G, Secchi A, Arduini A. Selective access to constitutionally identical, orientationally isomeric calix[6]arene-based [3]rotaxanes by an active template approach. Chem Sci 2021; 12:6419-6428. [PMID: 34084442 PMCID: PMC8115267 DOI: 10.1039/d1sc00279a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
Abstract
Tris(phenylureido)calix[6]arene is endowed with unique properties that make it a valuable macrocyclic component for the synthesis of mechanically interlocked molecules. Its three-dimensional and intrinsically nonsymmetric structure is kinetically selective toward two processes: (i) in apolar media, the threading of bipyridinium based axle-like components takes place exclusively from the upper rim; (ii) SN2 alkylation reactions of a pyridylpyridinium precursor engulfed in the cavity occur selectively at pyridylpyridinium nitrogen atom located at the macrocycle upper rim (active template synthesis). Here we exploit such properties to prepare two series of [3]rotaxanes, each consisting of three sequence isomers that arise from the threading of two identical but nonsymmetric wheels on a symmetric thread differing only for the reciprocal orientation of the macrocycles. The features of the calix[6]arene and the active template synthetic approach, together with a careful selection of the precursors, enabled us to selectively synthesise the [3]rotaxane sequence isomers of each series with fast kinetics and high yields. Expedient access to a series of spatially controlled oriented [3]rotaxane isomers via a metal-free active template approach.![]()
Collapse
Affiliation(s)
- Margherita Bazzoni
- Dipartimento di Scienze Chimiche, della Vita e della Sostenibilità Ambientale, Università di Parma Parco Area delle Scienze 17/A I-43124 Parma Italy
| | - Leonardo Andreoni
- Dipartimento di Chimica "G. Ciamician", Università di Bologna Via Selmi 2 I-40126 Bologna Italy
| | - Serena Silvi
- Dipartimento di Chimica "G. Ciamician", Università di Bologna Via Selmi 2 I-40126 Bologna Italy
| | - Alberto Credi
- Istituto per la Sintesi Organica e la Fotoreattività, Consiglio Nazionale delle Ricerche Via Gobetti 101 I-40129 Bologna Italy.,Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna Viale del Risorgimento 4 I-40136 Bologna Italy
| | - Gianpiero Cera
- Dipartimento di Scienze Chimiche, della Vita e della Sostenibilità Ambientale, Università di Parma Parco Area delle Scienze 17/A I-43124 Parma Italy
| | - Andrea Secchi
- Dipartimento di Scienze Chimiche, della Vita e della Sostenibilità Ambientale, Università di Parma Parco Area delle Scienze 17/A I-43124 Parma Italy
| | - Arturo Arduini
- Dipartimento di Scienze Chimiche, della Vita e della Sostenibilità Ambientale, Università di Parma Parco Area delle Scienze 17/A I-43124 Parma Italy
| |
Collapse
|
24
|
Shen L, Yi M, Japip S, Han C, Tian L, Lau CH, Wang Y. Breaking through permeability–selectivity trade‐off of thin‐film composite membranes assisted with crown ethers. AIChE J 2021. [DOI: 10.1002/aic.17173] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Liang Shen
- Key Laboratory of Material Chemistry for Energy Conversion and Storage (Huazhong University of Science and Technology) Ministry of Education Wuhan China
- Hubei Key Laboratory of Material Chemistry and Service Failure, School of Chemistry and Chemical Engineering Huazhong University of Science & Technology Wuhan China
| | - Ming Yi
- Key Laboratory of Material Chemistry for Energy Conversion and Storage (Huazhong University of Science and Technology) Ministry of Education Wuhan China
- Hubei Key Laboratory of Material Chemistry and Service Failure, School of Chemistry and Chemical Engineering Huazhong University of Science & Technology Wuhan China
| | - Susilo Japip
- Department of Chemical and Biomolecular Engineering National University of Singapore Singapore Singapore
| | - Chao Han
- Key Laboratory of Material Chemistry for Energy Conversion and Storage (Huazhong University of Science and Technology) Ministry of Education Wuhan China
- Hubei Key Laboratory of Material Chemistry and Service Failure, School of Chemistry and Chemical Engineering Huazhong University of Science & Technology Wuhan China
| | - Lian Tian
- Key Laboratory of Material Chemistry for Energy Conversion and Storage (Huazhong University of Science and Technology) Ministry of Education Wuhan China
- Hubei Key Laboratory of Material Chemistry and Service Failure, School of Chemistry and Chemical Engineering Huazhong University of Science & Technology Wuhan China
| | - Cher Hon Lau
- School of Engineering The University of Edinburgh Edinburgh UK
| | - Yan Wang
- Key Laboratory of Material Chemistry for Energy Conversion and Storage (Huazhong University of Science and Technology) Ministry of Education Wuhan China
- Hubei Key Laboratory of Material Chemistry and Service Failure, School of Chemistry and Chemical Engineering Huazhong University of Science & Technology Wuhan China
| |
Collapse
|
25
|
Abstract
Mechanically interlocked molecules (MIMs) have gained attention in the field of catalysis due to their unique molecular properties. Central to MIMs, rotaxanes are highly promising and attractive supramolecular catalysts due to their unique three-dimensional structures and the flexibility of their subcomponents. This Minireview discusses the use of rotaxanes in organocatalysis and transition-metal catalysis.
Collapse
Affiliation(s)
- Carel Kwamen
- Faculty of ChemistryOrganic Chemistry and Center for NanointegrationDuisburg- Essen (CENIDE)University of Duisburg-EssenUniversitätsstrasse 745141EssenGermany
| | - Jochen Niemeyer
- Faculty of ChemistryOrganic Chemistry and Center for NanointegrationDuisburg- Essen (CENIDE)University of Duisburg-EssenUniversitätsstrasse 745141EssenGermany
| |
Collapse
|
26
|
Gao X, Cui Z, Lin YJ, Jin GX. Construction of organometallic trefoil knots and one-dimensional chains featuring half-sandwich Cp*Rh corner units and an abnormal zwitterion ligand. Org Chem Front 2021. [DOI: 10.1039/d0qo01279c] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
An abnormal flexible O-coordinated zwitterion ligand L shows self-adaptive conformation behaviour in chemical self-assembly. Two trefoil knots were obtained with C-shaped ligand L and two novel 1D chains were obtained with Z-shaped ligand L.
Collapse
Affiliation(s)
- Xiang Gao
- Department of Chemistry
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials
- State Key Laboratory of Molecular Engineering of Polymers
- Fudan University
- Shanghai 200438
| | - Zheng Cui
- Department of Chemistry
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials
- State Key Laboratory of Molecular Engineering of Polymers
- Fudan University
- Shanghai 200438
| | - Yue-Jian Lin
- Department of Chemistry
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials
- State Key Laboratory of Molecular Engineering of Polymers
- Fudan University
- Shanghai 200438
| | - Guo-Xin Jin
- Department of Chemistry
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials
- State Key Laboratory of Molecular Engineering of Polymers
- Fudan University
- Shanghai 200438
| |
Collapse
|
27
|
Pairault N, Bessaguet A, Barat R, Frédéric L, Pieters G, Crassous J, Opalinski I, Papot S. Diastereoselective synthesis of [1]rotaxanes via an active metal template strategy. Chem Sci 2020; 12:2521-2526. [PMID: 34164020 PMCID: PMC8179266 DOI: 10.1039/d0sc05369d] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
Despite the impressive number of interlocked molecules described in the literature over the past 30 years, only a few stereoselective syntheses of mechanically chiral rotaxanes have been reported so far. In this study, we present the first diastereoselective synthesis of mechanically planar chiral [1]rotaxanes, that has been achieved using the active template Cu-mediated alkyne–azide cycloaddition reaction. This synthetic method has been applied to the preparation of a [1]rotaxane bearing a labile stopper that can then be substituted without disruption of the mechanical bond. This approach paves the way for the synthesis of a wide variety of mechanically planar chiral [1]rotaxanes, hence allowing the study of the properties and potential applications of this class of interlocked molecular architectures. The first diastereoselective synthesis of mechanically planar chiral [1]rotaxanes has been achieved using the active template Cu-mediated alkyne–azide cycloaddition reaction.![]()
Collapse
Affiliation(s)
- Noël Pairault
- Université de Poitiers, UMR CNRS 7285, Institut de Chimie des Milieux et Matériaux de Poitiers (IC2MP), Groupe "Systèmes Moléculaires Programmés" Rue Michel-Brunet, TSA 51106 86073 Poitiers Cedex 9 France
| | - Adrien Bessaguet
- Université de Poitiers, UMR CNRS 7285, Institut de Chimie des Milieux et Matériaux de Poitiers (IC2MP), Groupe "Systèmes Moléculaires Programmés" Rue Michel-Brunet, TSA 51106 86073 Poitiers Cedex 9 France
| | - Romain Barat
- Université de Poitiers, UMR CNRS 7285, Institut de Chimie des Milieux et Matériaux de Poitiers (IC2MP), Groupe "Systèmes Moléculaires Programmés" Rue Michel-Brunet, TSA 51106 86073 Poitiers Cedex 9 France
| | - Lucas Frédéric
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM F-91191 Gif-sur-Yvette France
| | - Grégory Pieters
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SCBM F-91191 Gif-sur-Yvette France
| | - Jeanne Crassous
- Université de Rennes, Institut des Sciences Chimiques de Rennes, UMR CNRS 6226 Campus de Beaulieu Rennes 35042 France
| | - Isabelle Opalinski
- Université de Poitiers, UMR CNRS 7285, Institut de Chimie des Milieux et Matériaux de Poitiers (IC2MP), Groupe "Systèmes Moléculaires Programmés" Rue Michel-Brunet, TSA 51106 86073 Poitiers Cedex 9 France
| | - Sébastien Papot
- Université de Poitiers, UMR CNRS 7285, Institut de Chimie des Milieux et Matériaux de Poitiers (IC2MP), Groupe "Systèmes Moléculaires Programmés" Rue Michel-Brunet, TSA 51106 86073 Poitiers Cedex 9 France
| |
Collapse
|
28
|
|
29
|
Martinez-Cuezva A, Saura-Sanmartin A, Alajarin M, Berna J. Mechanically Interlocked Catalysts for Asymmetric Synthesis. ACS Catal 2020. [DOI: 10.1021/acscatal.0c02032] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Alberto Martinez-Cuezva
- Departamento de Quı́mica Orgánica, Facultad de Quı́mica, Regional Campus of International Excellence “Campus Mare Nostrum”, Universidad de Murcia, E-30100 Murcia, Spain
| | - Adrian Saura-Sanmartin
- Departamento de Quı́mica Orgánica, Facultad de Quı́mica, Regional Campus of International Excellence “Campus Mare Nostrum”, Universidad de Murcia, E-30100 Murcia, Spain
| | - Mateo Alajarin
- Departamento de Quı́mica Orgánica, Facultad de Quı́mica, Regional Campus of International Excellence “Campus Mare Nostrum”, Universidad de Murcia, E-30100 Murcia, Spain
| | - Jose Berna
- Departamento de Quı́mica Orgánica, Facultad de Quı́mica, Regional Campus of International Excellence “Campus Mare Nostrum”, Universidad de Murcia, E-30100 Murcia, Spain
| |
Collapse
|
30
|
Tian C, Fielden SDP, Pérez-Saavedra B, Vitorica-Yrezabal IJ, Leigh DA. Single-Step Enantioselective Synthesis of Mechanically Planar Chiral [2]Rotaxanes Using a Chiral Leaving Group Strategy. J Am Chem Soc 2020; 142:9803-9808. [PMID: 32356978 PMCID: PMC7266371 DOI: 10.1021/jacs.0c03447] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
![]()
We report a one-step
enantioselective synthesis of mechanically
planar chiral [2]rotaxanes. Previous studies of such molecules have
generally involved the separation of enantiomers from racemic mixtures
or the preparation and separation of diastereomeric intermediates
followed by post-assembly modification to remove other sources of
chirality. Here, we demonstrate a simple asymmetric metal-free active
template rotaxane synthesis using a primary amine, an activated ester
with a chiral leaving group, and an achiral crown ether lacking rotational
symmetry. Mechanically planar chiral rotaxanes are obtained directly
in up to 50% enantiomeric excess. The rotaxanes were characterized
by NMR spectroscopy, high-resolution mass spectrometry, chiral HPLC,
single crystal X-ray diffraction, and circular dichroism. Either rotaxane
enantiomer could be prepared selectively by incorporating pseudoenantiomeric
cinchona alkaloids into the chiral leaving group.
Collapse
Affiliation(s)
- Chong Tian
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Stephen D P Fielden
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Borja Pérez-Saavedra
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | | | - David A Leigh
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom.,School of Chemistry and Molecular Engineering, East China Normal University, 200062 Shanghai, China
| |
Collapse
|
31
|
Singh J, Kim DH, Kim EH, Kim H, Hadiputra R, Jung J, Chi KW. The First Quantitative Synthesis of a Closed Three-Link Chain (613) Using Coordination and Noncovalent Interactions-Driven Self-Assembly. J Am Chem Soc 2020; 142:9327-9336. [DOI: 10.1021/jacs.0c01406] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Jatinder Singh
- Department of Chemistry, University of Ulsan, Ulsan 44776, Republic of Korea
- Energy Materials Laboratory, Korea Institute of Energy Research, Daejeon 34129, Republic of Korea
| | - Dong Hwan Kim
- Department of Chemistry, University of Ulsan, Ulsan 44776, Republic of Korea
| | - Eun-Hee Kim
- Center for Research Equipments, Korea Basic Science Institute, Ochang, Chungbuk 28119, Republic of Korea
| | - Hyunuk Kim
- Energy Materials Laboratory, Korea Institute of Energy Research, Daejeon 34129, Republic of Korea
| | - Rizky Hadiputra
- Department of Chemistry, University of Ulsan, Ulsan 44776, Republic of Korea
| | - Jaehoon Jung
- Department of Chemistry, University of Ulsan, Ulsan 44776, Republic of Korea
| | - Ki-Whan Chi
- Department of Chemistry, University of Ulsan, Ulsan 44776, Republic of Korea
| |
Collapse
|
32
|
Nierengarten I, Nierengarten J. Diversity Oriented Preparation of Pillar[5]arene-Containing [2]Rotaxanes by a Stopper Exchange Strategy. ChemistryOpen 2020; 9:393-400. [PMID: 32257747 PMCID: PMC7110104 DOI: 10.1002/open.202000035] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Revised: 02/20/2020] [Indexed: 12/28/2022] Open
Abstract
Rotaxane building blocks bearing 3,5-bis(trifluoromethyl) benzenesulfonate (BTBS) stoppers have been efficiently prepared from a pillar[5]arene derivative, 3,5-bis(trifluoromethyl) benzenesulfonyl chloride (BTBSCl) and different diols, namely 1,10-decanediol and 1,12-dodecanediol. The BTBS moieties of these compounds are good leaving groups and stopper exchange reactions could be achieved by treatment with different nucleophiles thus affording rotaxanes with ester, thioether or ether stoppers.
Collapse
Affiliation(s)
- Iwona Nierengarten
- Laboratoire de Chimie des Matériaux MoléculairesUniversité de Strasbourg et CNRS (UMR 7402 LIMA), Ecole Européenne de Chimie, Polymères et Matériaux25 rue Becquerel67087Strasbourg Cedex 2France
| | - Jean‐François Nierengarten
- Laboratoire de Chimie des Matériaux MoléculairesUniversité de Strasbourg et CNRS (UMR 7402 LIMA), Ecole Européenne de Chimie, Polymères et Matériaux25 rue Becquerel67087Strasbourg Cedex 2France
| |
Collapse
|