• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (4615860)   Today's Articles (5289)   Subscriber (49393)
For: Miller D, Stern A, Burstein D. Deciphering microbial gene function using natural language processing. Nat Commun 2022;13:5731. [PMID: 36175448 DOI: 10.1038/s41467-022-33397-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Accepted: 09/16/2022] [Indexed: 11/08/2022]  Open
Number Cited by Other Article(s)
1
Sikirzhytskaya A, Tyagin I, Sutton SS, Wyatt MD, Safro I, Shtutman M. AI-based mining of biomedical literature: Applications for drug repurposing for the treatment of dementia. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.06.06.597745. [PMID: 38895485 PMCID: PMC11185689 DOI: 10.1101/2024.06.06.597745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/21/2024]
2
Hwang Y, Cornman AL, Kellogg EH, Ovchinnikov S, Girguis PR. Genomic language model predicts protein co-regulation and function. Nat Commun 2024;15:2880. [PMID: 38570504 PMCID: PMC10991518 DOI: 10.1038/s41467-024-46947-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Accepted: 03/13/2024] [Indexed: 04/05/2024]  Open
3
Xu J, Xu X, Jiang Y, Fu Y, Shen C. Waste to resource: Mining antimicrobial peptides in sludge from metagenomes using machine learning. ENVIRONMENT INTERNATIONAL 2024;186:108574. [PMID: 38507933 DOI: 10.1016/j.envint.2024.108574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Revised: 02/26/2024] [Accepted: 03/09/2024] [Indexed: 03/22/2024]
4
Dotan E, Jaschek G, Pupko T, Belinkov Y. Effect of tokenization on transformers for biological sequences. Bioinformatics 2024;40:btae196. [PMID: 38608190 PMCID: PMC11055402 DOI: 10.1093/bioinformatics/btae196] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Revised: 02/20/2024] [Accepted: 04/11/2024] [Indexed: 04/14/2024]  Open
5
Ke S, Pan Y, Jin Y, Meng J, Xiao Y, Chen S, Zhang Z, Li R, Tong F, Jiang B, Song Z, Zhu M, Ye C. Efficient Spiking Neural Networks with Biologically Similar Lithium-Ion Memristor Neurons. ACS APPLIED MATERIALS & INTERFACES 2024;16:13989-13996. [PMID: 38441421 DOI: 10.1021/acsami.3c19261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/21/2024]
6
Chen W, Miao C, Zhang Z, Fung CSH, Wang R, Chen Y, Qian Y, Cheng L, Yip KY, Tsui SKW, Cao Q. Commonly used software tools produce conflicting and overly-optimistic AUPRC values. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.02.02.578654. [PMID: 38370825 PMCID: PMC10871236 DOI: 10.1101/2024.02.02.578654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/20/2024]
7
Miller D, Arias O, Burstein D. GeNLP: a web tool for NLP-based exploration and prediction of microbial gene function. Bioinformatics 2024;40:btae034. [PMID: 38291951 PMCID: PMC10868303 DOI: 10.1093/bioinformatics/btae034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Revised: 12/13/2023] [Accepted: 01/29/2024] [Indexed: 02/01/2024]  Open
8
Rodríguez Del Río Á, Giner-Lamia J, Cantalapiedra CP, Botas J, Deng Z, Hernández-Plaza A, Munar-Palmer M, Santamaría-Hernando S, Rodríguez-Herva JJ, Ruscheweyh HJ, Paoli L, Schmidt TSB, Sunagawa S, Bork P, López-Solanilla E, Coelho LP, Huerta-Cepas J. Functional and evolutionary significance of unknown genes from uncultivated taxa. Nature 2024;626:377-384. [PMID: 38109938 PMCID: PMC10849945 DOI: 10.1038/s41586-023-06955-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2022] [Accepted: 12/08/2023] [Indexed: 12/20/2023]
9
Wu S, Feng T, Tang W, Qi C, Gao J, He X, Wang J, Zhou H, Fang Z. metaProbiotics: a tool for mining probiotic from metagenomic binning data based on a language model. Brief Bioinform 2024;25:bbae085. [PMID: 38487846 PMCID: PMC10940841 DOI: 10.1093/bib/bbae085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Revised: 01/26/2024] [Accepted: 02/15/2024] [Indexed: 03/18/2024]  Open
10
Harari S, Miller D, Fleishon S, Burstein D, Stern A. Using big sequencing data to identify chronic SARS-Coronavirus-2 infections. Nat Commun 2024;15:648. [PMID: 38245511 PMCID: PMC10799923 DOI: 10.1038/s41467-024-44803-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Accepted: 01/04/2024] [Indexed: 01/22/2024]  Open
11
Egli A. ChatGPT, GPT-4, and Other Large Language Models: The Next Revolution for Clinical Microbiology? Clin Infect Dis 2023;77:1322-1328. [PMID: 37399030 PMCID: PMC10640689 DOI: 10.1093/cid/ciad407] [Citation(s) in RCA: 15] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Revised: 06/16/2023] [Accepted: 06/30/2023] [Indexed: 07/04/2023]  Open
12
Aguirre-Sánchez JR, Quiñones B, Ortiz-Muñoz JA, Prieto-Alvarado R, Vega-López IF, Martínez-Urtaza J, Lee BG, Chaidez C. Comparative Genomic Analyses of Virulence and Antimicrobial Resistance in Citrobacter werkmanii, an Emerging Opportunistic Pathogen. Microorganisms 2023;11:2114. [PMID: 37630674 PMCID: PMC10457828 DOI: 10.3390/microorganisms11082114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Revised: 08/11/2023] [Accepted: 08/13/2023] [Indexed: 08/27/2023]  Open
13
de Lorenzo V. Innovation versus novelty in microbial systems. Environ Microbiol 2023;25:167-170. [PMID: 36335556 PMCID: PMC10098617 DOI: 10.1111/1462-2920.16278] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Accepted: 11/02/2022] [Indexed: 11/08/2022]
PrevPage 1 of 1 1Next
© 2004-2024 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA