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Garrido-Palazuelos LI, Aguirre-Sánchez JR, Castro-Del Campo N, López-Cuevas O, González-Torres B, Chaidez C, Medrano-Félix JA. Genomic characteristics of Salmonella Montevideo and Pomona: impact of isolation source on antibiotic resistance, virulence and metabolic capacity. Int J Environ Health Res 2024:1-16. [PMID: 38576268 DOI: 10.1080/09603123.2024.2336597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2024] [Accepted: 03/25/2024] [Indexed: 04/06/2024]
Abstract
Salmonella enterica is known for its disease-causing serotypes, including Montevideo and Pomona. These serotypes have been found in various environments, including river water, sediments, food, and animals. However, the global spread of these serotypes has increased, leading to many reported infections and outbreaks. The goal of this study was the genomic analysis of 48 strains of S. Montevideo and S. Pomona isolated from different sources, including clinical. Results showed that environmental strains carried more antibiotic resistance genes than the clinical strains, such as genes for resistance to aminoglycosides, chloramphenicol, and sulfonamides. Additionally, the type 4 secretion system, was only found in environmental strains. .Also many phosphotransferase transport systems were identified and the presence of genes for the alternative pathway Entner-Doudoroff. The origin of isolation may have a significant impact on the ability of Salmonella isolates to adapt and survive in different environments, leading to genomic flexibility and a selection advantage.
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Affiliation(s)
- Lennin Isaac Garrido-Palazuelos
- Laboratorio Nacional Para la Investigación En Inocuidad Alimentaria (LANIIA), Centro de Investigación En Alimentación y Desarrollo A.C (CIAD), Culiacán, México
| | - José Roberto Aguirre-Sánchez
- Laboratorio Nacional Para la Investigación En Inocuidad Alimentaria (LANIIA), Centro de Investigación En Alimentación y Desarrollo A.C (CIAD), Culiacán, México
| | - Nohelia Castro-Del Campo
- Laboratorio Nacional Para la Investigación En Inocuidad Alimentaria (LANIIA), Centro de Investigación En Alimentación y Desarrollo A.C (CIAD), Culiacán, México
| | - Osvaldo López-Cuevas
- Laboratorio Nacional Para la Investigación En Inocuidad Alimentaria (LANIIA), Centro de Investigación En Alimentación y Desarrollo A.C (CIAD), Culiacán, México
| | - Berenice González-Torres
- Laboratorio Nacional Para la Investigación En Inocuidad Alimentaria (LANIIA), Centro de Investigación En Alimentación y Desarrollo A.C (CIAD), Culiacán, México
| | - Cristóbal Chaidez
- Laboratorio Nacional Para la Investigación En Inocuidad Alimentaria (LANIIA), Centro de Investigación En Alimentación y Desarrollo A.C (CIAD), Culiacán, México
| | - José Andrés Medrano-Félix
- Investigadoras e investigadores por México Centro de Investigación En Alimentación y Desarrollo A.C. Laboratorio Nacional para la Investigación en Inocuidad Alimentaria, Culiacán, México
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Lira-Morales JD, López-Cuevas O, Medrano-Félix JA, González-Gómez JP, González-López I, Castro-Del Campo N, Gomez-Gil B, Chaidez C. Genomic Surveillance of SARS-CoV-2 in México: Three Years since Wuhan, China's First Reported Case. Viruses 2023; 15:2223. [PMID: 38005903 PMCID: PMC10674944 DOI: 10.3390/v15112223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2023] [Accepted: 10/24/2023] [Indexed: 11/26/2023] Open
Abstract
OBJECTIVE The aim of this work was to analyze the metadata of the SARS-CoV-2 sequences obtained from samples collected in Mexico from 2020 to 2022. MATERIALS AND METHODS Metadata of SARS-CoV-2 sequences from samples collected in Mexico up to 31 December 2022 was retrieved from GISAID and manually cured for interpretation. RESULTS As of December 2022, Mexican health authorities and the scientific community have sequenced up to 81,983 SARS-CoV-2 viral genomes deposited in GISAID, representing 1.1% of confirmed cases. The number of sequences obtained per state corresponded to the gross domestic product (GDP) of each state for the first (Mexico City) and the last (Tlaxcala). Approximately 25% of the sequences were obtained from CoViGen-Mex, an interdisciplinary initiative of health and scientific institutions to collect and sequence samples nationwide. The metadata showed a clear dominance of sequences retrieved by women. A similar variant distribution over time was found in Mexico and overseas, with the Omicron variant predominating. Finally, the age group with the highest representation in the sequences was adults aged 21 to 50 years, accounting for more than 50% of the total. CONCLUSIONS Mexico presents diverse sociodemographic and economic characteristics. The COVID-19 pandemic has been and continues to be a challenge for collaboration across the country and around the world.
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Affiliation(s)
- Juan Daniel Lira-Morales
- Centro de Investigación en Alimentación y Desarrollo A.C., Coordinación Regional Culiacán, Culiacan 80110, Mexico; (J.D.L.-M.); (O.L.-C.); (J.P.G.-G.); (I.G.-L.); (N.C.-D.C.)
| | - Osvaldo López-Cuevas
- Centro de Investigación en Alimentación y Desarrollo A.C., Coordinación Regional Culiacán, Culiacan 80110, Mexico; (J.D.L.-M.); (O.L.-C.); (J.P.G.-G.); (I.G.-L.); (N.C.-D.C.)
| | - José Andrés Medrano-Félix
- Investigadoras e Investigadores por México-Centro de Investigación en Alimentación y Desarrollo A.C., Coordinación Regional Culiacán, Culiacan 80110, Mexico;
| | - Jean Pierre González-Gómez
- Centro de Investigación en Alimentación y Desarrollo A.C., Coordinación Regional Culiacán, Culiacan 80110, Mexico; (J.D.L.-M.); (O.L.-C.); (J.P.G.-G.); (I.G.-L.); (N.C.-D.C.)
| | - Irvin González-López
- Centro de Investigación en Alimentación y Desarrollo A.C., Coordinación Regional Culiacán, Culiacan 80110, Mexico; (J.D.L.-M.); (O.L.-C.); (J.P.G.-G.); (I.G.-L.); (N.C.-D.C.)
| | - Nohelia Castro-Del Campo
- Centro de Investigación en Alimentación y Desarrollo A.C., Coordinación Regional Culiacán, Culiacan 80110, Mexico; (J.D.L.-M.); (O.L.-C.); (J.P.G.-G.); (I.G.-L.); (N.C.-D.C.)
| | - Bruno Gomez-Gil
- Centro de Investigación en Alimentación y Desarrollo A.C., Coordinación Regional Mazatlán, Mazatlan 82112, Mexico;
| | - Cristóbal Chaidez
- Centro de Investigación en Alimentación y Desarrollo A.C., Coordinación Regional Culiacán, Culiacan 80110, Mexico; (J.D.L.-M.); (O.L.-C.); (J.P.G.-G.); (I.G.-L.); (N.C.-D.C.)
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Avila-Novoa MG, González-Torres B, González-Gómez JP, Guerrero-Medina PJ, Martínez-Chávez L, Martínez-Gonzáles NE, Chaidez C, Gutiérrez-Lomelí M. Genomic Insights into Listeria monocytogenes: Organic Acid Interventions for Biofilm Prevention and Control. Int J Mol Sci 2023; 24:13108. [PMID: 37685913 PMCID: PMC10487766 DOI: 10.3390/ijms241713108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 08/15/2023] [Accepted: 08/19/2023] [Indexed: 09/10/2023] Open
Abstract
Listeria monocytogenes is an important pathogen that has been implicated in foodborne illness. The aim of the present study was to investigate the diversity of virulence factors associated with the mechanisms of pathogenicity, persistence, and formation of biofilm L. monocytogenes by tandem analysis of whole-genome sequencing. The lineages that presented L. monocytogenes (LmAV-2, LmAV-3, and LmAV-6) from Hass avocados were lineages I and II. Listeria pathogenicity island 1 (LIPI-1) and LIPI-2 were found in the isolates, while LIPI-3 and Listeria genomic island (LGI-2) only was in IIb. Stress survival island (SSI-1) was identified in lineage I and II. In the in silico analysis, resistance genes belonging to several groups of antibiotics were detected, but the bcrABC and transposon Tn6188 related to resistance to quaternary ammonium salts (QACs) were not detected in L. monocytogenes. Subsequently, the anti-L. monocytogenes planktonic cell effect showed for QACs (MIC = 6.25 ppm/MBC = 100 ppm), lactic acid (MBC = 1 mg/mL), citric acid (MBC = 0.5 mg/mL) and gallic acid (MBC = 2 mg/mL). The anti-biofilm effect with organic acids (22 °C) caused a reduction of 4-5 log10 cfu/cm2 after 10 min against control biofilm L. monocytogenes formed on PP than SS. This study is an important contribution to understanding the genomic diversity and epidemiology of L. monocytogenes to establish a control measure to reduce the impact on the environment and the consumer.
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Affiliation(s)
- María Guadalupe Avila-Novoa
- Centro de Investigación en Biotecnología Microbiana y Alimentaria, Departamento de Ciencias Básicas, División de Desarrollo Biotecnológico, Centro Universitario de la Ciénega, Universidad de Guadalajara, Av. Universidad 1115, Col. Lindavista, Ocotlán 47820, Jalisco, Mexico; (M.G.A.-N.); (P.J.G.-M.)
| | - Berenice González-Torres
- Laboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Carretera a Eldorado Km 5.5, Campo El Diez, Culiacán 80110, Sinaloa, Mexico; (B.G.-T.); (J.P.G.-G.); (C.C.)
| | - Jean Pierre González-Gómez
- Laboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Carretera a Eldorado Km 5.5, Campo El Diez, Culiacán 80110, Sinaloa, Mexico; (B.G.-T.); (J.P.G.-G.); (C.C.)
| | - Pedro Javier Guerrero-Medina
- Centro de Investigación en Biotecnología Microbiana y Alimentaria, Departamento de Ciencias Básicas, División de Desarrollo Biotecnológico, Centro Universitario de la Ciénega, Universidad de Guadalajara, Av. Universidad 1115, Col. Lindavista, Ocotlán 47820, Jalisco, Mexico; (M.G.A.-N.); (P.J.G.-M.)
| | - Liliana Martínez-Chávez
- Departamentos de Farmacobiología y Matemáticas, CUCEI, Universidad de Guadalajara, Marcelino García Barragán 1451, Guadalajara 44430, Jalisco, Mexico; (L.M.-C.); (N.E.M.-G.)
| | - Nanci Edid Martínez-Gonzáles
- Departamentos de Farmacobiología y Matemáticas, CUCEI, Universidad de Guadalajara, Marcelino García Barragán 1451, Guadalajara 44430, Jalisco, Mexico; (L.M.-C.); (N.E.M.-G.)
| | - Cristóbal Chaidez
- Laboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Carretera a Eldorado Km 5.5, Campo El Diez, Culiacán 80110, Sinaloa, Mexico; (B.G.-T.); (J.P.G.-G.); (C.C.)
| | - Melesio Gutiérrez-Lomelí
- Centro de Investigación en Biotecnología Microbiana y Alimentaria, Departamento de Ciencias Básicas, División de Desarrollo Biotecnológico, Centro Universitario de la Ciénega, Universidad de Guadalajara, Av. Universidad 1115, Col. Lindavista, Ocotlán 47820, Jalisco, Mexico; (M.G.A.-N.); (P.J.G.-M.)
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Aguirre-Sánchez JR, Quiñones B, Ortiz-Muñoz JA, Prieto-Alvarado R, Vega-López IF, Martínez-Urtaza J, Lee BG, Chaidez C. Comparative Genomic Analyses of Virulence and Antimicrobial Resistance in Citrobacter werkmanii, an Emerging Opportunistic Pathogen. Microorganisms 2023; 11:2114. [PMID: 37630674 PMCID: PMC10457828 DOI: 10.3390/microorganisms11082114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Revised: 08/11/2023] [Accepted: 08/13/2023] [Indexed: 08/27/2023] Open
Abstract
Citrobacter werkmanii is an emerging and opportunistic human pathogen found in developing countries and is a causative agent of wound, urinary tract, and blood infections. The present study conducted comparative genomic analyses of a C. werkmanii strain collection from diverse geographical locations and sources to identify the relevant virulence and antimicrobial resistance genes. Pangenome analyses divided the examined C. werkmanii strains into five distinct clades; the subsequent classification identified genes with functional roles in carbohydrate and general metabolism for the core genome and genes with a role in secretion, adherence, and the mobilome for the shell and cloud genomes. A maximum-likelihood phylogenetic tree with a heatmap, showing the virulence and antimicrobial genes' presence or absence, demonstrated the presence of genes with functional roles in secretion systems, adherence, enterobactin, and siderophore among the strains belonging to the different clades. C. werkmanii strains in clade V, predominantly from clinical sources, harbored genes implicated in type II and type Vb secretion systems as well as multidrug resistance to aminoglycoside, beta-lactamase, fluoroquinolone, phenicol, trimethoprim, macrolides, sulfonamide, and tetracycline. In summary, these comparative genomic analyses have demonstrated highly pathogenic and multidrug-resistant genetic profiles in C. werkmanii strains, indicating a virulence potential for this commensal and opportunistic human pathogen.
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Affiliation(s)
- José R. Aguirre-Sánchez
- Laboratorio Nacional para la Investigación en Inocuidad Alimentaria, Centro de Investigación en Alimentación y Desarrollo A.C. (CIAD), Coordinación Regional Culiacán, Culiacan 80110, Mexico;
| | - Beatriz Quiñones
- Produce Safety and Microbiology Research Unit, Western Regional Research Center, Agricultural Research Service, U.S. Department of Agriculture, Albany, CA 94710, USA; (B.Q.); (B.G.L.)
| | - José A. Ortiz-Muñoz
- Parque de Innovación Tecnológica de la Universidad Autónoma de Sinaloa, Culiacan 80040, Mexico; (J.A.O.-M.); (R.P.-A.); (I.F.V.-L.)
| | - Rogelio Prieto-Alvarado
- Parque de Innovación Tecnológica de la Universidad Autónoma de Sinaloa, Culiacan 80040, Mexico; (J.A.O.-M.); (R.P.-A.); (I.F.V.-L.)
| | - Inés F. Vega-López
- Parque de Innovación Tecnológica de la Universidad Autónoma de Sinaloa, Culiacan 80040, Mexico; (J.A.O.-M.); (R.P.-A.); (I.F.V.-L.)
| | - Jaime Martínez-Urtaza
- Departament de Genètica i de Microbiologia, Universitat Autờnoma de Barcelona, 08193 Bellaterra, Spain;
| | - Bertram G. Lee
- Produce Safety and Microbiology Research Unit, Western Regional Research Center, Agricultural Research Service, U.S. Department of Agriculture, Albany, CA 94710, USA; (B.Q.); (B.G.L.)
| | - Cristóbal Chaidez
- Laboratorio Nacional para la Investigación en Inocuidad Alimentaria, Centro de Investigación en Alimentación y Desarrollo A.C. (CIAD), Coordinación Regional Culiacán, Culiacan 80110, Mexico;
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5
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Orozco-Ochoa AK, González-Gómez JP, Castro-Del Campo N, Lira-Morales JD, Martínez-Rodríguez CI, Gomez-Gil B, Chaidez C. Characterization and genome analysis of six novel Vibrio parahaemolyticus phages associated with acute hepatopancreatic necrosis disease (AHPND). Virus Res 2023; 323:198973. [PMID: 36272541 PMCID: PMC10194199 DOI: 10.1016/j.virusres.2022.198973] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Revised: 10/18/2022] [Accepted: 10/18/2022] [Indexed: 11/09/2022]
Abstract
Vibrio parahaemolyticus causes acute hepatopancreatic necrosis disease (AHPND) in farmed shrimp. Due to its damage potential, which could be as high as a 100% mortality rate, bacteriophages have emerged as a promising natural control intervention other than antibiotics, yet multiple roadblocks need to be overcome. In this study, six bacteriophages isolated from seafood samples, seawater, and estuary water in Sinaloa, Mexico, demonstrated a narrow host range among Mexican AHPND-causing V. parahaemolyticus. All bacteriophages are composed of a double-stranded DNA genome with lengths ranging between 43,268 and 57,805 bp. All six phages exhibited latency periods of 10-30 min and burst sizes of 34-168 viral particles per infected cell. The optimal MOI for bacteriophage propagation was 0.01-1. No transfer RNA (tRNA), virulence, or resistance genes were found in either genome, and the life cycle of these phages was classified as virulent by the PhageAI platform. Phylogenetic and comparative genomics analyzes assigned phages M3, C2, M9, and M83 as new species not yet reported within the genus Maculvirus, Autographiviridae family. ALK and CHI phages were assigned as new members of a new genus not yet classified within the subfamily Queuovirinae. The findings highlight the potential of CHI, ALK, M3, C2, M9, and M83 as promising alternatives against AHPND-causing V. parahaemolyticus from Mexico.
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Affiliation(s)
- Alma Karen Orozco-Ochoa
- Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Laboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Carretera a Eldorado Km 5.5, Campo El Diez, Culiacán, Sinaloa 80110, México
| | - Jean Pierre González-Gómez
- Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Laboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Carretera a Eldorado Km 5.5, Campo El Diez, Culiacán, Sinaloa 80110, México
| | - Nohelia Castro-Del Campo
- Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Laboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Carretera a Eldorado Km 5.5, Campo El Diez, Culiacán, Sinaloa 80110, México
| | - Juan Daniel Lira-Morales
- Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Laboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Carretera a Eldorado Km 5.5, Campo El Diez, Culiacán, Sinaloa 80110, México
| | - Célida Isabel Martínez-Rodríguez
- Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Laboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Carretera a Eldorado Km 5.5, Campo El Diez, Culiacán, Sinaloa 80110, México
| | - Bruno Gomez-Gil
- Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Unidad Mazatlán en Acuicultura y Manejo Ambiental, Mazatlán, Sinaloa AP 711, México
| | - Cristóbal Chaidez
- Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Laboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Carretera a Eldorado Km 5.5, Campo El Diez, Culiacán, Sinaloa 80110, México.
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González-Torres B, González-Gómez JP, Ramírez K, Castro-del Campo N, González-López I, Garrido-Palazuelos LI, Chaidez C, Medrano-Félix JA. Population structure of the Salmonella enterica serotype Oranienburg reveals similar virulence, regardless of isolation years and sources. Gene 2023; 851:146966. [DOI: 10.1016/j.gene.2022.146966] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Revised: 09/26/2022] [Accepted: 10/11/2022] [Indexed: 11/06/2022]
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González-López I, Medrano-Félix JA, Castro-Del Campo N, López-Cuevas O, Ibarra Rodríguez JR, Martinez-Rodríguez C, Valdez-Torres JB, Chaidez C. Metabolic plasticity of Salmonella enterica as adaptation strategy in river water. Int J Environ Health Res 2022; 32:1529-1541. [PMID: 33706620 DOI: 10.1080/09603123.2021.1896682] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Accepted: 02/24/2021] [Indexed: 06/12/2023]
Abstract
The survival of Salmonella in subtropical river water depends on genetic and metabolic reorganization for the expression of alternative metabolic pathways in response to starvation, which allows Salmonella to use environmental carbon sources (C-sources). However, knowledge regarding the metabolic plasticity of Salmonella serotypes for C-source utilization when exposed to these conditions remains unclear. The aim of this study was to evaluate the metabolic response and level of environmental C-source consumption by environmental Salmonella (Oranienburg and Saintpaul) and clinical Salmonella (Typhi) serotypes by comparing laboratory growth against exposure to river water conditions. Metabolic characterization was performed using a Biolog® EcoPlateTM containing 31 C-sources. The results obtained under laboratory growth conditions showed that environmental serotypes used 74.1% of the C-sources, whereas the clinical serotype used 45.1%. In contrast, in river water, all strains used up to 96.7% of the C-sources. Salmonella exposure to river water increases its capacity to use environmental C-sources.
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Affiliation(s)
- Irvin González-López
- Environmental Microbiology, Laboratorio Nacional Para La Investigación En Inocuidad Alimentaria, Centro De Investigación En Alimentación Y Desarrollo A.C, Culiacán, Sinaloa, México
| | - José Andrés Medrano-Félix
- Environmental Microbiology, Laboratorio Nacional Para La Investigación En Inocuidad Alimentaria, CONACYT-Centro De Investigación En Alimentación Y Desarrollo A.C, Culiacán, Sinaloa, México
| | - Nohelia Castro-Del Campo
- Environmental Microbiology, Laboratorio Nacional Para La Investigación En Inocuidad Alimentaria, Centro De Investigación En Alimentación Y Desarrollo A.C, Culiacán, Sinaloa, México
| | - Osvaldo López-Cuevas
- Environmental Microbiology, Laboratorio Nacional Para La Investigación En Inocuidad Alimentaria, Centro De Investigación En Alimentación Y Desarrollo A.C, Culiacán, Sinaloa, México
| | | | - Celida Martinez-Rodríguez
- Environmental Microbiology, Laboratorio Nacional Para La Investigación En Inocuidad Alimentaria, Centro De Investigación En Alimentación Y Desarrollo A.C, Culiacán, Sinaloa, México
| | - José Benigno Valdez-Torres
- Environmental Microbiology, Laboratorio Nacional Para La Investigación En Inocuidad Alimentaria, Centro De Investigación En Alimentación Y Desarrollo A.C, Culiacán, Sinaloa, México
| | - Cristóbal Chaidez
- Environmental Microbiology, Laboratorio Nacional Para La Investigación En Inocuidad Alimentaria, Centro De Investigación En Alimentación Y Desarrollo A.C, Culiacán, Sinaloa, México
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8
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González-López I, Medrano-Félix JA, Castro-del Campo N, López-Cuevas O, González-Gómez JP, Valdez-Torres JB, Aguirre-Sánchez JR, Martínez-Urtaza J, Gómez-Gil B, Lee BG, Quiñones B, Chaidez C. Prevalence and Genomic Diversity of Salmonella enterica Recovered from River Water in a Major Agricultural Region in Northwestern Mexico. Microorganisms 2022; 10:microorganisms10061214. [PMID: 35744732 PMCID: PMC9228531 DOI: 10.3390/microorganisms10061214] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Revised: 06/10/2022] [Accepted: 06/12/2022] [Indexed: 11/18/2022] Open
Abstract
Salmonella enterica is a leading cause of human gastrointestinal disease worldwide. Given that Salmonella is persistent in aquatic environments, this study examined the prevalence, levels and genotypic diversity of Salmonella isolates recovered from major rivers in an important agricultural region in northwestern Mexico. During a 13-month period, a total of 143 river water samples were collected and subjected to size-exclusion ultrafiltration, followed by enrichment, and selective media for Salmonella isolation and quantitation. The recovered Salmonella isolates were examined by next-generation sequencing for genome characterization. Salmonella prevalence in river water was lower in the winter months (0.65 MPN/100 mL) and significantly higher in the summer months (13.98 MPN/100 mL), and a Poisson regression model indicated a negative effect of pH and salinity and a positive effect of river water temperature (p = 0.00) on Salmonella levels. Molecular subtyping revealed Oranienburg, Anatum and Saintpaul were the most predominant Salmonella serovars. Single nucleotide polymorphism (SNP)-based phylogeny revealed that the detected 27 distinct serovars from river water clustered in two major clades. Multiple nonsynonymous SNPs were detected in stiA, sivH, and ratA, genes required for Salmonella fitness and survival, and these findings identified relevant markers to potentially develop improved methods for characterizing this pathogen.
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Affiliation(s)
- Irvin González-López
- Centro de Investigación en Alimentación y Desarrollo A.C. (CIAD), Coordinación Regional Culiacán, Laboratorio Nacional para la Investigación en Inocuidad Alimentaria, Culiacán 80110, Sinaloa, Mexico; (I.G.-L.); (N.C.-d.C.); (O.L.-C.); (J.P.G.-G.); (J.B.V.-T.); (J.R.A.-S.)
| | - José Andrés Medrano-Félix
- Investigadoras e Investigadores por México, Centro de Investigación en Alimentación y Desarrollo A.C. (CIAD), Coordinación Regional Culiacán, Laboratorio Nacional para la Investigación en Inocuidad Alimentaria, Culiacán 80110, Sinaloa, Mexico;
| | - Nohelia Castro-del Campo
- Centro de Investigación en Alimentación y Desarrollo A.C. (CIAD), Coordinación Regional Culiacán, Laboratorio Nacional para la Investigación en Inocuidad Alimentaria, Culiacán 80110, Sinaloa, Mexico; (I.G.-L.); (N.C.-d.C.); (O.L.-C.); (J.P.G.-G.); (J.B.V.-T.); (J.R.A.-S.)
| | - Osvaldo López-Cuevas
- Centro de Investigación en Alimentación y Desarrollo A.C. (CIAD), Coordinación Regional Culiacán, Laboratorio Nacional para la Investigación en Inocuidad Alimentaria, Culiacán 80110, Sinaloa, Mexico; (I.G.-L.); (N.C.-d.C.); (O.L.-C.); (J.P.G.-G.); (J.B.V.-T.); (J.R.A.-S.)
| | - Jean Pierre González-Gómez
- Centro de Investigación en Alimentación y Desarrollo A.C. (CIAD), Coordinación Regional Culiacán, Laboratorio Nacional para la Investigación en Inocuidad Alimentaria, Culiacán 80110, Sinaloa, Mexico; (I.G.-L.); (N.C.-d.C.); (O.L.-C.); (J.P.G.-G.); (J.B.V.-T.); (J.R.A.-S.)
| | - José Benigno Valdez-Torres
- Centro de Investigación en Alimentación y Desarrollo A.C. (CIAD), Coordinación Regional Culiacán, Laboratorio Nacional para la Investigación en Inocuidad Alimentaria, Culiacán 80110, Sinaloa, Mexico; (I.G.-L.); (N.C.-d.C.); (O.L.-C.); (J.P.G.-G.); (J.B.V.-T.); (J.R.A.-S.)
| | - José Roberto Aguirre-Sánchez
- Centro de Investigación en Alimentación y Desarrollo A.C. (CIAD), Coordinación Regional Culiacán, Laboratorio Nacional para la Investigación en Inocuidad Alimentaria, Culiacán 80110, Sinaloa, Mexico; (I.G.-L.); (N.C.-d.C.); (O.L.-C.); (J.P.G.-G.); (J.B.V.-T.); (J.R.A.-S.)
| | - Jaime Martínez-Urtaza
- Department of Genetics and Microbiology, Universitat Autờnoma de Barcelona, 08193 Bellaterra, Spain;
| | - Bruno Gómez-Gil
- Centro de Investigación en Alimentación y Desarrollo A.C. (CIAD), Coordinación Regional Mazatlán, Acuicultura y Manejo Ambiental, Mazatlán 82100, Sinaloa, Mexico;
| | - Bertram G. Lee
- U.S. Department of Agriculture, Agricultural Research Service, Western Regional Research Center, Produce Safety and Microbiology Research Unit, Albany, CA 94710, USA; (B.G.L.); (B.Q.)
| | - Beatriz Quiñones
- U.S. Department of Agriculture, Agricultural Research Service, Western Regional Research Center, Produce Safety and Microbiology Research Unit, Albany, CA 94710, USA; (B.G.L.); (B.Q.)
| | - Cristóbal Chaidez
- Centro de Investigación en Alimentación y Desarrollo A.C. (CIAD), Coordinación Regional Culiacán, Laboratorio Nacional para la Investigación en Inocuidad Alimentaria, Culiacán 80110, Sinaloa, Mexico; (I.G.-L.); (N.C.-d.C.); (O.L.-C.); (J.P.G.-G.); (J.B.V.-T.); (J.R.A.-S.)
- Correspondence: ; Tel.: +52-(667)-480-6950
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Chaidez C, Peraza-Garay FDJ, Medrano-Félix JA, Castro-Del Campo N, López-Cuevas O. Phenotypic traits of carbon source utilization in environmental Salmonella strains isolated from river water. Int J Environ Health Res 2022; 32:1155-1163. [PMID: 33251827 DOI: 10.1080/09603123.2020.1849578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2020] [Accepted: 11/06/2020] [Indexed: 06/12/2023]
Abstract
Salmonella in the environment have evolved genetically to maintain a stable cell metabolism. Nevertheless, a lack of common nutrients (such as glucose) causes these strains to metabolize alternative carbon sources. In this study, 21 strains of Salmonella Oranienburg isolated from subtropical river water were evaluated to compare their adaptation and preconditioning abilities for the consumption of environmental carbon sources (ECS). The results obtained in this study attributed important biological characteristics to the adaptation of the metabolism of Salmonella strains to diverse ECS; these characteristics include but are not limited to variations in plasticity and natural preconditioning in closely related microorganisms, such as environmental isolates belonging to the serotype Oranienburg.
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Affiliation(s)
- Cristóbal Chaidez
- The department is Environmental microbiology, Laboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA, Centro de Investigación en Alimentación y Desarrollo, A.C. Carretera a Eldorado, Culiacán, México
| | | | | | - Nohelia Castro-Del Campo
- The department is Environmental microbiology, Laboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA, Centro de Investigación en Alimentación y Desarrollo, A.C. Carretera a Eldorado, Culiacán, México
| | - Osvaldo López-Cuevas
- The department is Environmental microbiology, Laboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA, Centro de Investigación en Alimentación y Desarrollo, A.C. Carretera a Eldorado, Culiacán, México
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10
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González-Gómez JP, López-Cuevas O, Castro-del Campo N, González-López I, Martínez-Rodríguez CI, Gomez-Gil B, Chaidez C. Genomic and biological characterization of the novel phages vB_VpaP_AL-1 and vB_VpaS_AL-2 infecting Vibrio parahaemolyticus associated with acute hepatopancreatic necrosis disease (AHPND). Virus Res 2022; 312:198719. [DOI: 10.1016/j.virusres.2022.198719] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Revised: 02/20/2022] [Accepted: 02/22/2022] [Indexed: 01/25/2023]
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11
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González-Gómez JP, González-Torres B, Guerrero-Medina PJ, López-Cuevas O, Chaidez C, Avila-Novoa MG, Gutiérrez-Lomelí M. Efficacy of Novel Bacteriophages against Escherichia coli Biofilms on Stainless Steel. Antibiotics (Basel) 2021; 10:1150. [PMID: 34680731 PMCID: PMC8532843 DOI: 10.3390/antibiotics10101150] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Revised: 09/14/2021] [Accepted: 09/22/2021] [Indexed: 11/30/2022] Open
Abstract
Biofilm formation by E. coli is a serious threat to meat processing plants. Chemical disinfectants often fail to eliminate biofilms; thus, bacteriophages are a promising alternative to solve this problem, since they are widely distributed, environmentally friendly, and nontoxic to humans. In this study, the biofilm formation of 10 E. coli strains isolated from the meat industry and E. coli ATCC BAA-1430 and ATCC 11303 were evaluated. Three strains, isolated from the meat contact surfaces, showed adhesion ability and produced extracellular polymeric substances. Biofilms of these three strains were developed onto stainless steel (SS) surfaces and enumerated at 2, 12, 24, 48, and 120 h, and were visualized by scanning electron microscopy. Subsequently, three bacteriophages showing podovirus morphology were isolated from ground beef and poultry liver samples, which showed lytic activity against the abovementioned biofilm-forming strains. SS surfaces with biofilms of 2, 14, and 48 h maturity were treated with mixed and individual bacteriophages at 8 and 9 log10 PFU/mL for 1 h. The results showed reductions greater than 6 log10 CFU/cm2 as a result of exposing SS surfaces with biofilms of 24 h maturity to 9 log10 PFU/mL of bacteriophages; however, the E. coli and bacteriophage strains, phage concentration, and biofilm development stage had significant effects on biofilm reduction (p < 0.05). In conclusion, the isolated bacteriophages showed effectiveness at reducing biofilms of isolated E. coli; however, it is necessary to increase the libraries of phages with lytic activity against the strains isolated from production environments.
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Affiliation(s)
- Jean Pierre González-Gómez
- Centro de Investigación en Biotecnología Microbiana y Alimentaria, Departamento de Ciencias Básicas, División de Desarrollo Biotecnológico, Centro Universitario de la Ciénega, Universidad de Guadalajara, Av. Universidad 1115, Ocotlán 47820, Mexico; (J.P.G.-G.); (B.G.-T.); (P.J.G.-M.)
- Laboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Carretera a Eldorado Km 5.5, Culiacán 80110, Mexico; (O.L.-C.); (C.C.)
| | - Berenice González-Torres
- Centro de Investigación en Biotecnología Microbiana y Alimentaria, Departamento de Ciencias Básicas, División de Desarrollo Biotecnológico, Centro Universitario de la Ciénega, Universidad de Guadalajara, Av. Universidad 1115, Ocotlán 47820, Mexico; (J.P.G.-G.); (B.G.-T.); (P.J.G.-M.)
- Laboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Carretera a Eldorado Km 5.5, Culiacán 80110, Mexico; (O.L.-C.); (C.C.)
| | - Pedro Javier Guerrero-Medina
- Centro de Investigación en Biotecnología Microbiana y Alimentaria, Departamento de Ciencias Básicas, División de Desarrollo Biotecnológico, Centro Universitario de la Ciénega, Universidad de Guadalajara, Av. Universidad 1115, Ocotlán 47820, Mexico; (J.P.G.-G.); (B.G.-T.); (P.J.G.-M.)
| | - Osvaldo López-Cuevas
- Laboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Carretera a Eldorado Km 5.5, Culiacán 80110, Mexico; (O.L.-C.); (C.C.)
| | - Cristóbal Chaidez
- Laboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Carretera a Eldorado Km 5.5, Culiacán 80110, Mexico; (O.L.-C.); (C.C.)
| | - María Guadalupe Avila-Novoa
- Centro de Investigación en Biotecnología Microbiana y Alimentaria, Departamento de Ciencias Básicas, División de Desarrollo Biotecnológico, Centro Universitario de la Ciénega, Universidad de Guadalajara, Av. Universidad 1115, Ocotlán 47820, Mexico; (J.P.G.-G.); (B.G.-T.); (P.J.G.-M.)
| | - Melesio Gutiérrez-Lomelí
- Centro de Investigación en Biotecnología Microbiana y Alimentaria, Departamento de Ciencias Básicas, División de Desarrollo Biotecnológico, Centro Universitario de la Ciénega, Universidad de Guadalajara, Av. Universidad 1115, Ocotlán 47820, Mexico; (J.P.G.-G.); (B.G.-T.); (P.J.G.-M.)
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12
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López-Cuevas O, Medrano-Félix JA, Castro-Del Campo N, Chaidez C. Bacteriophage applications for fresh produce food safety. Int J Environ Health Res 2021; 31:687-702. [PMID: 31646886 DOI: 10.1080/09603123.2019.1680819] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2019] [Accepted: 10/11/2019] [Indexed: 06/10/2023]
Abstract
Foodborne illnesses, mainly bacteria, are a major cause of morbidity and mortality worldwide. Pathogenic bacteria are involved in almost every step within the fresh produce chain compromising the companies' food safety programs and generating an ascending number of foodborne outbreaks in various regions of the world. Recently, bacteriophages return to the status of biocontrol agents. These bacteria-killing viruses are able to reduce or eliminate pathogenic bacterial load from raw and ready to eat foods. Phages are efficient, strain specific, easy to isolate and manipulate, and for that reasons, they have been used in pre and post harvest processes alone or mixed with antimicrobial agents for biocontrolling pathogenic bacteria. In this review, we focused on the feasibility of using lytic bacteriophage on fresh fruits and vegetables industry, considering challenges and perspectives mainly at industrial production level (packinghouses, supermarkets), where high volume of phage preparations and consequently high costs may be required.
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Affiliation(s)
- O López-Cuevas
- Laboratorio Nacional para la Investigación en Inocuidad Alimentari (LANIIA), Centro de Investigación en Alimentación y Desarrollo, A.C Culiacán, México
| | - J A Medrano-Félix
- CONACYT-Centro de Investigación en Alimentación y Desarrollo, A.C Culiacán, México
| | - N Castro-Del Campo
- Laboratorio Nacional para la Investigación en Inocuidad Alimentari (LANIIA), Centro de Investigación en Alimentación y Desarrollo, A.C Culiacán, México
| | - C Chaidez
- Laboratorio Nacional para la Investigación en Inocuidad Alimentari (LANIIA), Centro de Investigación en Alimentación y Desarrollo, A.C Culiacán, México
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González-Gómez JP, Soto-Rodriguez S, López-Cuevas O, Castro-Del Campo N, Chaidez C, Gomez-Gil B. Phylogenomic Analysis Supports Two Possible Origins for Latin American Strains of Vibrio parahaemolyticus Associated with Acute Hepatopancreatic Necrosis Disease (AHPND). Curr Microbiol 2020; 77:3851-3860. [PMID: 32959087 DOI: 10.1007/s00284-020-02214-w] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Accepted: 09/13/2020] [Indexed: 02/07/2023]
Abstract
Acute hepatopancreatic necrosis disease (AHPND) is a severe disease affecting recently stocked cultured shrimps. The disease is mainly caused by V. parahaemolyticus that harbors the pVA1 plasmid; this plasmid contains the pirA and pirB genes, which encode a delta-endotoxin. AHPND originated in China in 2009 and has since spread to several other Asian countries and recently to Latin America (2013). Many Asian strains have been sequenced, and their sequences are publicly accessible in scientific databases, but only four strains from Latin America have been reported. In this study, we analyzed nine pVA1-harboring V. parahaemolyticus sequences from strains isolated in Mexico along with the 38 previously available pVA1-harboring V. parahaemolyticus sequences and the reference strain RIMD 2210633. The studied sequences were clustered into three phylogenetic clades (Latin American, Malaysian, and Cosmopolitan) through pangenomic and phylogenomic analysis. The nucleotide sequence alignment of the pVA1 plasmids harbored by the Asian and Latin American strains confirmed that the main structural difference in the plasmid between the Asian and Latin American strains is the absence of the Tn3 transposon in the Asian strains; in addition, some deletions in the pirAB region were found in two of the Latin American strains. Our study represents the most robust and inclusive phylogenomic analysis of pVA1-harboring V. parahaemolyticus conducted to date and provides insight into the epidemiology of AHPND. In addition, this study highlights that disease diagnosis through the detection of the pirA and pirB genes is an inadequate approach due to the instability of these genes.
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Affiliation(s)
- Jean Pierre González-Gómez
- Laboratorio Nacional Para la Investigación en Inocuidad Alimentaria (LANIIA), Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Carretera a Eldorado Km 5.5, Campo El Diez, 80110, Culiacán, Sinaloa, Mexico
| | - Sonia Soto-Rodriguez
- Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Unidad Mazatlán en Acuicultura y Manejo Ambiental, AP 711, Mazatlán, Sinaloa, Mexico
| | - Osvaldo López-Cuevas
- Laboratorio Nacional Para la Investigación en Inocuidad Alimentaria (LANIIA), Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Carretera a Eldorado Km 5.5, Campo El Diez, 80110, Culiacán, Sinaloa, Mexico
| | - Nohelia Castro-Del Campo
- Laboratorio Nacional Para la Investigación en Inocuidad Alimentaria (LANIIA), Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Carretera a Eldorado Km 5.5, Campo El Diez, 80110, Culiacán, Sinaloa, Mexico
| | - Cristóbal Chaidez
- Laboratorio Nacional Para la Investigación en Inocuidad Alimentaria (LANIIA), Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Carretera a Eldorado Km 5.5, Campo El Diez, 80110, Culiacán, Sinaloa, Mexico.
| | - Bruno Gomez-Gil
- Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Unidad Mazatlán en Acuicultura y Manejo Ambiental, AP 711, Mazatlán, Sinaloa, Mexico.
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14
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Medrano-Félix JA, Chaidez C, Mena KD, Soto-Galindo MDS, Castro-Del Campo N. Characterization of biofilm formation by Salmonella enterica at the air-liquid interface in aquatic environments. Environ Monit Assess 2018; 190:221. [PMID: 29546664 DOI: 10.1007/s10661-018-6585-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2017] [Accepted: 02/28/2018] [Indexed: 06/08/2023]
Abstract
Survival of bacterial pathogens in different environments is due, in part, to their ability to form biofilms. Four wild-type Salmonella enterica strains, two Oranienburg and two Saintpaul isolated from river water and animal feces, were tested for biofilm formation at the air-liquid interface under stressful conditions (pH and salinity treatments such as pH 3, NaCl 4.5 w/v; pH 7, NaCl 4.5 w/v; pH 10, NaCl 4.5 w/v; pH 3, Nacl 0.5 w/v; pH 7, NaCl 0.5 w/v; and pH 10, NaCl 0.5 w/v); Salmonella Typhimurium DT104 was used as a control strain. Salmonella Oranienburg and Saintpaul from feces were moderately hydrophobic and motile, while S. Saintpaul from water and the control strain S. Typhimurium showed high hydrophobicity, which helped them form more resistant biofilms than S. Oranienburg. Under stressful conditions, all strains experienced difficulties in forming biofilms. Salmonella Saintpaul and Typhimurium expressed the red dry and rough (RDAR) morphotype and were able to form biofilm at air-liquid interface, contrarily to Oranienburg that showed incomplete rough morphology. This study contributes to the knowledge of biofilm formation as a survival strategy for Salmonella in aquatic environments.
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Affiliation(s)
- José Andrés Medrano-Félix
- CONACYT-Centro de Investigación en Alimentación y Desarrollo A.C., Coordinación Regional Culiacán, Laboratorio Nacional para la Investigación en Inocuidad Alimentaria, Culiacán, Sinaloa, Mexico
| | - Cristóbal Chaidez
- Centro de Investigación en Alimentación y Desarrollo A.C., Coordinación Regional Culiacán, Laboratorio Nacional para la Investigación en Inocuidad Alimentaria, Carretera a Eldorado km. 5.5 Campo El Diez, 80110, Culiacán, Sinaloa, Mexico
| | - Kristina D Mena
- Health Science Center at Houston, The University of Texas, Houston, TX, USA
| | - María Del Socorro Soto-Galindo
- Centro de Investigación en Alimentación y Desarrollo A.C., Coordinación Regional Culiacán, Laboratorio Nacional para la Investigación en Inocuidad Alimentaria, Carretera a Eldorado km. 5.5 Campo El Diez, 80110, Culiacán, Sinaloa, Mexico
| | - Nohelia Castro-Del Campo
- Centro de Investigación en Alimentación y Desarrollo A.C., Coordinación Regional Culiacán, Laboratorio Nacional para la Investigación en Inocuidad Alimentaria, Carretera a Eldorado km. 5.5 Campo El Diez, 80110, Culiacán, Sinaloa, Mexico.
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Estrada-Acosta MD, Ramirez K, Medrano-Félix JA, Castro-Del Campo N, López-Moreno HS, Jimenez Edeza M, Martínez-Urtaza J, Chaidez C. Effect of river water exposition on adhesion and invasion abilities of Salmonella Oranienburg and Saintpaul. Int J Environ Health Res 2018; 28:43-54. [PMID: 29249164 DOI: 10.1080/09603123.2017.1415308] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
This study was performed to evaluate in vitro the adherence and invasiveness capacity of Salmonella Oranienburg and Saintpaul (isolated from river water) exposed to laboratory and river water growth conditions and inoculated into epithelial HEp-2 cell. Results showed that Salmonella Oranienburg and Salmonella Saintpaul showed lower ability to adhere and invade epithelial HEp-2 cells under both growth conditions as compared to Salmonella Typhimurium reference strain. S. Oranienburg adhesion capacity was not affected by the growth conditions, while S. Saintpaul exposed to river water significantly (p < 0.05) decreased its adhesion capacity by 75.7 %. On the contrary, S. Oranienburg exposed to river water reduced its invasion efficiency by 80 %, whereas S. Saintpaul showed no differences between growth conditions. In conclusion, this study suggests that the exposure to non-host conditions, such as river water, adversely affects the adhesion and invasiveness of Salmonella serotypes differently, impacting on their ability to re-enter a new host.
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Affiliation(s)
| | - Karina Ramirez
- b División de Estudios de Posgrado e Investigación , Instituto Tecnologico de Culiacan , Culiacan , Mexico
| | - José Andrés Medrano-Félix
- c Food Safety , CONACYT-Centro de Investigación en Alimentación y Desarrollo A.C. , Culiacán , Mexico
| | | | - Hector S López-Moreno
- e Facultad de Ciencias Quimico Biologicas , Universidad Autonoma de Sinaloa , Culiacan , Mexico
| | - Maribel Jimenez Edeza
- f Facultad de Ciencias Químico-Biológicas , Universidad Autónoma de Sinaloa , Culiacán , Mexico
| | | | - Cristóbal Chaidez
- d Food Safety , Centro de Investigación en Alimentación y Desarrollo , Culiacan , Mexico
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Medrano-Félix A, Estrada-Acosta M, Peraza-Garay F, Castro-Del Campo N, Martínez-Urtaza J, Chaidez C. Differences in carbon source utilization of Salmonella Oranienburg and Saintpaul isolated from river water. Int J Environ Health Res 2017; 27:252-263. [PMID: 28565917 DOI: 10.1080/09603123.2017.1332349] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2017] [Accepted: 05/15/2017] [Indexed: 06/07/2023]
Abstract
Long-term exposure to river water by non-indigenous micro-organisms such as Salmonella may affect metabolic adaptation to carbon sources. This study was conducted to determine differences in carbon source utilization of Salmonella Oranienburg and Salmonella Saintpaul (isolated from tropical river water) as well as the control strain Salmonella Typhimurium exposed to laboratory, river water, and host cells (Hep-2 cell line) growth conditions. Results showed that Salmonella Oranienburg and Salmonella Saintpaul showed better ability for carbon source utilization under the three growth conditions evaluated; however, S. Oranienburg showed the fastest and highest utilization on different carbon sources, including D-Glucosaminic acid, N-acetyl-D-Glucosamine, Glucose-1-phosphate, and D-Galactonic acid, while Salmonella Saintpaul and S. Typhimurium showed a limited utilization of carbon sources. In conclusion, this study suggests that environmental Salmonella strains show better survival and preconditioning abilities to external environments than the control strain based on their plasticity on diverse carbon sources use.
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Affiliation(s)
- Andrés Medrano-Félix
- a CONACYT-Centro de Investigación en Alimentación y Desarrollo A.C. , Coordinación Regional Culiacán, Laboratorio Nacional para la Investigación en Inocuidad Alimentaria. Culiacán , Sinaloa , México
| | | | - Felipe Peraza-Garay
- c Centro de Investigación y Docencia en Ciencias de la Salud , Universidad Autónoma de Sinaloa , Sinaloa , México
| | - Nohelia Castro-Del Campo
- d Centro de Investigación en Alimentación y Desarrollo A.C. , Coordinación Regional Culiacán Laboratorio Nacional para la Investigación en Inocuidad Alimentaria. Culiacán , Sinaloa , México
| | | | - Cristóbal Chaidez
- d Centro de Investigación en Alimentación y Desarrollo A.C. , Coordinación Regional Culiacán Laboratorio Nacional para la Investigación en Inocuidad Alimentaria. Culiacán , Sinaloa , México
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Amarillas L, Chaidez C, González-Robles A, Lugo-Melchor Y, León-Félix J. Characterization of novel bacteriophage phiC119 capable of lysing multidrug-resistant Shiga toxin-producing Escherichia coli O157:H7. PeerJ 2016; 4:e2423. [PMID: 27672499 PMCID: PMC5028729 DOI: 10.7717/peerj.2423] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2016] [Accepted: 08/09/2016] [Indexed: 12/22/2022] Open
Abstract
BACKGROUND Shiga toxin-producing Escherichia coli (STEC) is one of the most common and widely distributed foodborne pathogens that has been frequently implicated in gastrointestinal and urinary tract infections. Moreover, high rates of multiple antibiotic-resistant E. coli strains have been reported worldwide. Due to the emergence of antibiotic-resistant strains, bacteriophages are considered an attractive alternative to biocontrol pathogenic bacteria. Characterization is a preliminary step towards designing a phage for biocontrol. METHODS In this study, we describe the characterization of a bacteriophage designated phiC119, which can infect and lyse several multidrug-resistant STEC strains and some Salmonella strains. The phage genome was screened to detect the stx-genes using PCR, morphological analysis, host range was determined, and genome sequencing were carried out, as well as an analysis of the cohesive ends and identification of the type of genetic material through enzymatic digestion of the genome. RESULTS Analysis of the bacteriophage particles by transmission electron microscopy showed that it had an icosahedral head and a long tail, characteristic of the family Siphoviridae. The phage exhibits broad host range against multidrug-resistant and highly virulent E. coli isolates. One-step growth experiments revealed that the phiC119 phage presented a large burst size (210 PFU/cell) and a latent period of 20 min. Based on genomic analysis, the phage contains a linear double-stranded DNA genome with a size of 47,319 bp. The phage encodes 75 putative proteins, but lysogeny and virulence genes were not found in the phiC119 genome. CONCLUSION These results suggest that phage phiC119 may be a good biological control agent. However, further studies are required to ensure its control of STEC and to confirm the safety of phage use.
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Affiliation(s)
- Luis Amarillas
- Laboratorio de Biología Molecular y Genómica Funcional, Centro de Investigación en Alimentación y Desarrollo, A. C., Culiacán, Sinaloa, México; Laboratorio de Genética, Instituto de Investigación Lightbourn, A. C., Cd. Jiménez, Chihuahua, México
| | - Cristóbal Chaidez
- Inocuidad Alimentaria, Centro de Investigación en Alimentación y Desarrollo, A. C. , Culiacán, Sinaloa , México
| | - Arturo González-Robles
- Departamento de Infectómica y Patogénesis Molecular, Centro de Investigación y de Estudios Avanzados, Instituto Politécnico Nacional , Ciudad de México , México
| | - Yadira Lugo-Melchor
- Laboratorio de Biología Molecular de la Unidad de Servicios Analíticos y Metrológicos, Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco A. C. , Guadalajara, Jalisco , México
| | - Josefina León-Félix
- Laboratorio de Biología Molecular y Genómica Funcional, Centro de Investigación en Alimentación y Desarrollo, A. C. , Culiacán, Sinaloa , México
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Castañeda-Ruelas GM, Soto-Beltrán M, Chaidez C. Detecting Sources ofStaphylococcus aureusin One Small-Scale Cheese Plant in Northwestern Mexico. J Food Saf 2016. [DOI: 10.1111/jfs.12290] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Gloria Marisol Castañeda-Ruelas
- Facultad de Ciencias Químico Biológicas, Universidad Autónoma de Sinaloa, Ciudad Universitaria S/N, Ciudad Universitaria; Culiacán Sinaloa México
| | - Marcela Soto-Beltrán
- Facultad de Ciencias Químico Biológicas, Universidad Autónoma de Sinaloa, Ciudad Universitaria S/N, Ciudad Universitaria; Culiacán Sinaloa México
| | - Cristóbal Chaidez
- National Food Safety Laboratory Research. Centro de Investigación en Alimentación y Desarrollo; AC, Centro de Investigación en Alimentación y Desarrollo; A. C., Carretera a Eldorado Km 5.5, Col. Campo El Diez 80129 Culiacán Sinaloa México
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Amézquita-López BA, Quiñones B, Soto-Beltrán M, Lee BG, Yambao JC, Lugo-Melchor OY, Chaidez C. Antimicrobial resistance profiles of Shiga toxin-producing Escherichia coli O157 and Non-O157 recovered from domestic farm animals in rural communities in Northwestern Mexico. Antimicrob Resist Infect Control 2016; 5:1. [PMID: 26734130 PMCID: PMC4700648 DOI: 10.1186/s13756-015-0100-5] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2015] [Accepted: 12/18/2015] [Indexed: 01/29/2023] Open
Abstract
Background Antimicrobial resistance in Shiga toxin-producing Escherichia coli (STEC) O157 and non-O157 is a matter of increasing concern. The aim of the present study was to investigate the antimicrobial resistance profiles of STEC O157 and non-O157 recovered from feces of domestic farm animals in the agricultural Culiacan Valley in Northwestern Mexico. Findings All of the examined STEC strains showed susceptibility to five antimicrobials, ceftazidime, ceftriaxone, ciprofloxacin, nalidixic acid, and trimethoprim-sulfamethoxazole. However, resistance to the four antimicrobials, ampicillin, cephalothin, chloramphenicol, and kanamycin was commonly observed. Interestingly, non-susceptibility to cephalothin was predominant among the examined STEC strains, corresponding to 85 % (22/26) of the O157:H7 from cattle, sheep and chicken and 73 % (24/33) of the non-O157 strains from cattle and sheep. Statistical analyses revealed that resistance to ampicillin was significantly correlated to 38 % (10/26) of STEC O157:H7 strains from multiple animal sources. Another significant correlation was found between serotype, source, and antimicrobial resistance; all of the O20:H4 strains, recovered from sheep, were highly resistant to tetracycline. Multidrug resistance profiles were identified in 42 % (22/53) of the non-susceptible STEC strains with clinically-relevant serotypes O8:H9, O75:H8, O146:H21, and O157:H7. Conclusions STEC O157 and non-O157 strains, recovered from domestic farm animals in the Culiacan Valley, exhibited resistance to classes of antimicrobials commonly used in Mexico, such as aminoglycosides, tetracyclines, cephalosporins and penicillin but were susceptible to fluoroquinolones, quinolones, and sulfonamides. These findings provide fundamental information that would aid in the surveillance of antimicrobial resistance in an important agricultural region in Northwestern Mexico. Electronic supplementary material The online version of this article (doi:10.1186/s13756-015-0100-5) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Bianca A Amézquita-López
- Faculty of Chemical and Biological Sciences (FCQB), The Autonomous University of Sinaloa (UAS), Josefa Ortiz de Domínguez y Blvd. de las Américas S/N, Ciudad Universitaria, 80013 Culiacan, Sinaloa México
| | - Beatriz Quiñones
- U.S. Department of Agriculture/Agricultural Research Service, Western Regional Research Center, Produce Safety and Microbiology Research Unit, 800 Buchanan Street, Albany, CA 94710 USA
| | - Marcela Soto-Beltrán
- Faculty of Chemical and Biological Sciences (FCQB), The Autonomous University of Sinaloa (UAS), Josefa Ortiz de Domínguez y Blvd. de las Américas S/N, Ciudad Universitaria, 80013 Culiacan, Sinaloa México
| | - Bertram G Lee
- U.S. Department of Agriculture/Agricultural Research Service, Western Regional Research Center, Produce Safety and Microbiology Research Unit, 800 Buchanan Street, Albany, CA 94710 USA
| | - Jaszemyn C Yambao
- U.S. Department of Agriculture/Agricultural Research Service, Western Regional Research Center, Produce Safety and Microbiology Research Unit, 800 Buchanan Street, Albany, CA 94710 USA
| | - Ofelia Y Lugo-Melchor
- Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco (CIATEJ), Normalistas 800, Colinas de La Normal, 44270 Guadalajara, Jalisco Mexico
| | - Cristóbal Chaidez
- Research Center in Food & Development (CIAD), Food Safety National Research Laboratory (LANIIA), Carretera a El Dorado Km5.5, Col. Campo El Diez, 80110 Culiacan, Sinaloa Mexico
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Chaidez C, Soto-Beltran M, Gerba CP, Tamimi AH. Reduction of risk of Salmonella infection from kitchen cleaning clothes by use of sodium hypochlorite disinfectant cleaner. Lett Appl Microbiol 2014; 59:487-92. [PMID: 25163762 DOI: 10.1111/lam.12321] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2014] [Revised: 07/17/2014] [Accepted: 08/26/2014] [Indexed: 11/27/2022]
Abstract
UNLABELLED The objective of this study was to evaluate the reduction of infection risk due to exposure to Salmonella sp. in kitchen cleaning clothes by the use of a bleach (sodium hypochlorite) cleaner utilizing a continuous-time dynamic exposure model. The only route of exposure considered was hand contamination during cloth use. The occurrence and numbers of Salmonella was studied in 60 homes over a 6-week period in which half disinfected kitchen cleaning clothes with a sodium hypochlorite based disinfectant cleaner. This study demonstrated that a significant risk exists for Salmonella infection from kitchen cleaning clothes in Mexican homes and that this risk can be reduced by almost 100-fold by soaking cleaning clothes in a bleach product. The risks of infection and illness could likely be further reduced by developing a more effective procedure for reducing Salmonella in cleaning clothes treated twice a day with a sodium hypochlorite disinfectant (i.e. longer soaking time) or using a greater concentration of the disinfectant. SIGNIFICANCE AND IMPACT OF THE STUDY Hygiene intervention is a key strategy to reduce the potential risk of disease-causing micro-organisms in households. There is a lack of understanding of the human health risk associated with the use of contaminated kitchen cleaning cloths. The study used a quantitative microbial risk assessment to estimate the risk associated with the use of kitchen cleaning clothes by using disinfectant products. The results showed that the use of prescribe protocols can reduce the risk of Salmonella infections in household kitchens.
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Affiliation(s)
- C Chaidez
- Centro de Investigación en Alimentación y Desarrollo, Culiacán, México
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21
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Estrada-Acosta M, Jiménez M, Chaidez C, León-Félix J, Castro-Del Campo N. Irrigation water quality and the benefits of implementing good agricultural practices during tomato (Lycopersicum esculentum) production. Environ Monit Assess 2014; 186:4323-4330. [PMID: 24682661 DOI: 10.1007/s10661-014-3701-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2013] [Accepted: 03/05/2014] [Indexed: 06/03/2023]
Abstract
The implementation of good agricultural practices (GAP) from irrigation water to the tomato packaging process enhances the safety of fresh produce and its value throughout the food chain. The aim of the present study was to show that fresh produce farms that apply and enforce GAP could reduce the presence of Salmonella in finished produce. Samples were collected biweekly from six packing houses from the central region of Sinaloa, México, for the isolation of Salmonella spp by the ISO 6579:2002 method, and the isolated strains were serotyped and genotyped by the Kauffmman-White scheme and pulsed field gel electrophoresis (PFGE), respectively. Salmonella strains were detected in 13 (36.1 %) irrigation water samples, while only two tomato samples were positive (5.5 %). Eight different serotypes were identified in irrigation water, and Salmonella Oranienburg (34 %) was the most prevalent; however, only Salmonella Agona and Salmonella Weltevreden were present on tomatoes. Salmonella Oranienburg was the most widely dispersed and variable serotype, with 10 different PFGE profiles. Salmonella Weltevreden was isolated from both types of samples, albeit with distinct genetic profiles, implying that the sources of contamination differ. These results confirm the utility of implementing good agricultural practices to reduce Salmonella contamination in irrigation water and the packaging process.
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Affiliation(s)
- M Estrada-Acosta
- Centro de Investigación en Alimentación y Desarrollo A.C, Carretera a Eldorado km. 5.5, Campo El Diez, Culiacán, 80110, México
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22
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Martínez-Bastidas T, Castro-del Campo N, Mena KD, Castro-del Campo N, León-Félix J, Gerba CP, Chaidez C. Detection of pathogenic micro-organisms on children's hands and toys during play. J Appl Microbiol 2014; 116:1668-75. [PMID: 24524673 DOI: 10.1111/jam.12473] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2013] [Revised: 01/21/2014] [Accepted: 02/07/2014] [Indexed: 11/28/2022]
Abstract
AIMS This study aimed to determine if the children's leisure activities impact the presence of pathogens on their hands and toys. METHODS & RESULTS To assess the microbiological hazard in playground areas, a pilot study that included 12 children was conducted. We then conducted an intervention study; children's hands and toys were washed before playing. Faecal coliforms, pathogenic bacteria and Giardia lamblia were quantified by membrane filtration, selective media and flotation techniques, respectively; rotavirus, hepatitis A and rhinovirus by RT-PCR. Pilot study results revealed faecal contamination on children's hands and toys after playing on sidewalks and in public parks. Pathogenic bacteria, hepatitis A and G. lamblia on children's hands were also found. In the intervention study, Staphylococcus aureus and Klebsiella pneumoniae were found on children's hands at concentrations up to 2·5 × 10(4) and 1 × 10(4) CFU hands(-1), respectively. E. coli and Kl. pneumoniae were detected on toys (2·4 × 10(3) and 2·7 × 10(4) CFU toy(-1), respectively). Salmonella spp, Serratia spp and G. lamblia cysts were also present on toys. CONCLUSION Children's play activities influence microbial presence on hands and toys; the transfer seems to occur in both ways. SIGNIFICANCE AND IMPACT OF THE STUDY Control strategy needs to be implemented to protect children from infectious diseases.
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Affiliation(s)
- T Martínez-Bastidas
- Centro de Investigación en Alimentación y Desarrollo, A.C. Unidad Culiacán, Sinaloa, Mexico
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Amézquita-López BA, Quiñones B, Lee BG, Chaidez C. Virulence profiling of Shiga toxin-producing Escherichia coli recovered from domestic farm animals in Northwestern Mexico. Front Cell Infect Microbiol 2014; 4:7. [PMID: 24551599 PMCID: PMC3908320 DOI: 10.3389/fcimb.2014.00007] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2013] [Accepted: 01/13/2014] [Indexed: 01/13/2023] Open
Abstract
Shiga toxin-producing Escherichia coli (STEC) is a zoonotic enteric pathogen that causes human gastrointestinal illnesses. The present study characterized the virulence profiles of O157 and non-O157 STEC strains, recovered from domestic animals in small rural farms within the agricultural Culiacan Valley in Mexico. Virulence genes coding for adhesins, cytotoxins, proteases, subtypes of Shiga toxin (Stx), and other effectors were identified in the STEC strains by PCR. The genotyping analysis revealed the presence of the effectors nleA, nleB, nleE, and nleH1-2, espK, and espN in the O157:H7 and O111:H8 STEC strains. Furthermore, the genes encoding the autoagglutinating adhesin (Saa) and subtilase (SubA) were exclusively identified in the O8:H19 eae-negative strains. The adhesin (iha) and the silent hemolysin (sheA) genes were detected in 79% of the O157 and non-O157 strains. To examine the relative toxicities of the STEC strains, a fluorescent Vero cell line, Vero-d2EGFPs, was employed to measure the inhibition of protein synthesis by Stx. Analysis of culture supernatants from serotype O8:H19 strains with the stx gene profile stx1a, stx2a, and stx2c and serotypes O75:H8 and O146:H8 strains with the stx gene profile stx1a, stx1c, and stx2b, resulted in a significant reduction in the Vero-d2EGFP fluorescent signal. These observations suggest that these non-O157 strains may have an enhanced ability to inhibit protein synthesis in Vero cells. Interestingly, analysis of the stx2c-positive O157:H7 strains resulted in a high fluorescent signal, indicating a reduced toxicity in the Vero-d2EGFP cells. These findings indicate that the O157 and non-O157 STEC strains, recovered in the Culiacan Valley, display distinct virulence profiles and relative toxicities in mammalian cells and have provided information for evaluating risks associated with zoonotic STEC in this agricultural region in Mexico.
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Affiliation(s)
| | - Beatriz Quiñones
- Produce Safety and Microbiology Research Unit, U.S. Department of Agriculture/Agricultural Research Service, Western Regional Research Center Albany, CA, USA
| | - Bertram G Lee
- Produce Safety and Microbiology Research Unit, U.S. Department of Agriculture/Agricultural Research Service, Western Regional Research Center Albany, CA, USA
| | - Cristóbal Chaidez
- Centro de Investigación en Alimentación y Desarrollo Culiacán, Mexico
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Amézquita-López BA, Quiñones B, Cooley MB, León-Félix J, Castro-del Campo N, Mandrell RE, Jiménez M, Chaidez C. Genotypic analyses of shiga toxin-producing Escherichia coli O157 and non-O157 recovered from feces of domestic animals on rural farms in Mexico. PLoS One 2012; 7:e51565. [PMID: 23251577 PMCID: PMC3519732 DOI: 10.1371/journal.pone.0051565] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2012] [Accepted: 11/02/2012] [Indexed: 11/18/2022] Open
Abstract
Shiga toxin-producing Escherichia coli (STEC) are zoonotic enteric pathogens associated with human gastroenteritis worldwide. Cattle and small ruminants are important animal reservoirs of STEC. The present study investigated animal reservoirs for STEC in small rural farms in the Culiacan Valley, an important agricultural region located in Northwest Mexico. A total of 240 fecal samples from domestic animals were collected from five sampling sites in the Culiacan Valley and were subjected to an enrichment protocol followed by either direct plating or immunomagnetic separation before plating on selective media. Serotype O157:H7 isolates with the virulence genes stx2, eae, and ehxA were identified in 40% (26/65) of the recovered isolates from cattle, sheep and chicken feces. Pulse-field gel electrophoresis (PFGE) analysis grouped most O157:H7 isolates into two clusters with 98.6% homology. The use of multiple-locus variable-number tandem repeat analysis (MLVA) differentiated isolates that were indistinguishable by PFGE. Analysis of the allelic diversity of MLVA loci suggested that the O157:H7 isolates from this region were highly related. In contrast to O157:H7 isolates, a greater genotypic diversity was observed in the non-O157 isolates, resulting in 23 PFGE types and 14 MLVA types. The relevant non-O157 serotypes O8:H19, O75:H8, O111:H8 and O146:H21 represented 35.4% (23/65) of the recovered isolates. In particular, 18.5% (12/65) of all the isolates were serotype O75:H8, which was the most variable serotype by both PFGE and MLVA. The non-O157 isolates were predominantly recovered from sheep and were identified to harbor either one or two stx genes. Most non-O157 isolates were ehxA-positive (86.5%, 32/37) but only 10.8% (4/37) harbored eae. These findings indicate that zoonotic STEC with genotypes associated with human illness are present in animals on small farms within rural communities in the Culiacan Valley and emphasize the need for the development of control measures to decrease risks associated with zoonotic STEC.
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Affiliation(s)
| | - Beatriz Quiñones
- U.S. Department of Agriculture/Agricultural Research Service, Produce Safety and Microbiology Research Unit, Western Regional Research Center, Albany, California, United States of America
- * E-mail: (BQ); (CC)
| | - Michael B. Cooley
- U.S. Department of Agriculture/Agricultural Research Service, Produce Safety and Microbiology Research Unit, Western Regional Research Center, Albany, California, United States of America
| | - Josefina León-Félix
- Centro de Investigación en Alimentación y Desarrollo, Culiacán, Sinaloa, México
| | | | - Robert E. Mandrell
- U.S. Department of Agriculture/Agricultural Research Service, Produce Safety and Microbiology Research Unit, Western Regional Research Center, Albany, California, United States of America
| | - Maribel Jiménez
- Facultad de Ciencias Químico Biológicas, Universidad Autónoma de Sinaloa, Culiacán, Sinaloa, México
| | - Cristóbal Chaidez
- Centro de Investigación en Alimentación y Desarrollo, Culiacán, Sinaloa, México
- * E-mail: (BQ); (CC)
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López-Cuevas O, Castro-Del Campo N, León-Félix J, González-Robles A, Chaidez C. Characterization of bacteriophages with a lytic effect on various Salmonella serotypes and Escherichia coli O157:H7. Can J Microbiol 2011; 57:1042-51. [PMID: 22145760 DOI: 10.1139/w11-099] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Four phages isolated from cattle and poultry feces were analyzed for their ability to lyse Salmonella serotypes and Escherichia coli O157:H7. The phage one-step growth curves, morphology, and genetic characteristics were determined. All phages showed a lytic effect on various Salmonella serotypes and E. coli O157:H7, which lysed at least 70% of the 234 strains tested. The phages had latent periods ranging from 10 to 15 min and generation times of 30 to 45 min, while burst size fluctuated between 154 and 426 PFU/cell. Phages morphology showed isometric and elongated heads and rigid contractile tails, consistent with morphology of the Myoviridae family. Phages' DNA dendrograms showed a distinctive RFLP when digested by HindIII and EcoRV, and SDS-PAGE profile showed distinctive proteins expression as well. In vitro phage challenge showed a total reduction of E. coli O157:H7, Salmonella Typhimurium and Saintpaul counts at 2 h, whereas for Salmonella Montevideo a reduction and retardation growth, at a multiplicity of infection (MOI) of 100, was observed; however, under a MOI of 10 000, no viable cells were detected after 4 h. The wide host ranges of these phages suggested they could be used for simultaneous biocontrol of some Salmonella serotypes and E. coli O157:H7.
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Affiliation(s)
- Osvaldo López-Cuevas
- a Laboratorio de Microbiología Ambiental y de Alimentos, Centro de Investigación en Alimentación y Desarrollo A.C. Carretera a Eldorado Km. 5.5, Campo El Diez, Culiacán, P.A. 32-A, 80129, Sinaloa, México
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Medrano-Félix A, Martínez C, Castro-del Campo N, León-Félix J, Peraza-Garay F, Gerba CP, Chaidez C. Impact of prescribed cleaning and disinfectant use on microbial contamination in the home. J Appl Microbiol 2010; 110:463-71. [PMID: 21143709 DOI: 10.1111/j.1365-2672.2010.04901.x] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
AIMS To identify and quantify the presence of Escherichia coli, Staphylococcus aureus, Salmonella, hepatitis A and norovirus in households and to assess the effect of chlorine and quaternary ammonium-based disinfectants following a prescribed use. METHODS AND RESULTS Eleven sites distributed in kitchen, bathroom, pet and children's areas of two groups of 30 homes each: (i) a nonprescribed disinfectant user group and (ii) a disinfectant protocol user group. During the 6-week study, samples were collected once a week except for week one when sample collection occurred immediately before and after disinfectant application to evaluate the disinfectant protocol. The concentration and occurrence of bacteria were less in the households with prescribed use of disinfectants. The greatest reductions were for E. coli (99%) and Staph. aureus (99·9999%), respectively. Only two samples were positive for HAV, while norovirus was absent. Disinfection protocols resulted in a significant (P < 0·05) microbial reduction in all areas of the homes tested compared to homes not using a prescribed protocol. CONCLUSIONS The study suggests that disinfectant product application under specific protocol is necessary to achieve greater microbial reductions. SIGNIFICANCE AND IMPACT OF THE STUDY Prescribed protocols constitute an important tool to reduce the occurrence of potential disease-causing micro-organisms in households.
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Affiliation(s)
- A Medrano-Félix
- Centro de Investigación en Alimentación y Desarrollo A. C., Culiacán, México
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Lugo-Melchor Y, Quiñones B, Amézquita-López BA, León-Félix J, García-Estrada R, Chaidez C. Characterization of Tetracycline Resistance inSalmonella entericaStrains Recovered from Irrigation Water in the Culiacan Valley, Mexico. Microb Drug Resist 2010; 16:185-90. [DOI: 10.1089/mdr.2010.0022] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- Yadira Lugo-Melchor
- Centro de Investigación en Alimentación y Desarrollo, Culiacan, Sinaloa, Mexico
| | - Beatriz Quiñones
- Produce Safety and Microbiology Research Unit, Western Regional Research Center, Agricultural Research Service, U.S. Department of Agriculture, Albany, California
| | | | - Josefina León-Félix
- Centro de Investigación en Alimentación y Desarrollo, Culiacan, Sinaloa, Mexico
| | | | - Cristóbal Chaidez
- Centro de Investigación en Alimentación y Desarrollo, Culiacan, Sinaloa, Mexico
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Hernandez-Morga J, Leon-Felix J, Peraza-Garay F, Gil-Salas B, Chaidez C. Detection and characterization of hepatitis A virus and Norovirus in estuarine water samples using ultrafiltration - RT-PCR integrated methods. J Appl Microbiol 2009; 106:1579-90. [DOI: 10.1111/j.1365-2672.2008.04125.x] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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