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Franchi S, Madabeni A, Tosato M, Gentile S, Asti M, Orian L, Di Marco V. Navigating through the coordination preferences of heavy alkaline earth metals: Laying the foundations for 223Ra- and 131/135mBa-based targeted alpha therapy and theranostics of cancer. J Inorg Biochem 2024; 256:112569. [PMID: 38701687 DOI: 10.1016/j.jinorgbio.2024.112569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Revised: 04/04/2024] [Accepted: 04/18/2024] [Indexed: 05/05/2024]
Abstract
The clinical success of [223Ra]RaCl2 (Xofigo®) for the palliative treatment of bone metastases in patients with prostate cancer has highlighted the therapeutic potential of α-particle emission. Expanding the applicability of radium-223 in Targeted Alpha Therapy of non-osseous tumors is followed up with significant interest, as it holds the potential to unveil novel treatment options in the comprehensive management of cancer. Moreover, the use of barium radionuclides, like barium-131 and -135m, is still unfamiliar in nuclear medicine applications, although they can be considered as radium-223 surrogates for imaging purposes. Enabling these applications requires the establishment of chelators able to form stable complexes with radium and barium radionuclides. Until now, only a limited number of ligands have been suggested and these molecules have been primarily inspired by existing structures known for their ability to complex large metal cations. However, a systematic inspection of chelators specifically tailored to Ra2+ and Ba2+ has yet to be conducted. This work delves into a comprehensive investigation of a series of small organic ligands, aiming to unveil the coordination preferences of both radium-223 and barium-131/135m. Electronic binding energies of both metal cations to each ligand were theoretically computed via Density Functional Theory calculations (COSMO-ZORA-PBE-D3/TZ2P), while thermodynamic stability constants were experimentally determined for Ba2+-ligand complexes by potentiometry, NMR and UV-Vis spectroscopies. The outcomes revealed malonate, 2-hydroxypyridine 1-oxide and picolinate as the most favorable building blocks to design multidentate chelators. These findings serve as foundation guidelines, propelling the development of cutting-edge radium-223- and barium-131/135m-based radiopharmaceuticals for Targeted Alpha Therapy and theranostics of cancer.
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Affiliation(s)
- Sara Franchi
- Department of Chemical Sciences, University of Padova, 35131 Padova, Italy.
| | - Andrea Madabeni
- Department of Chemical Sciences, University of Padova, 35131 Padova, Italy.
| | - Marianna Tosato
- Radiopharmaceutical Chemistry Section, Nuclear Medicine Unit, AUSL-IRCCS Reggio Emilia, 42122 Reggio Emilia, Italy.
| | - Silvia Gentile
- Department of Chemical Sciences, University of Padova, 35131 Padova, Italy.
| | - Mattia Asti
- Radiopharmaceutical Chemistry Section, Nuclear Medicine Unit, AUSL-IRCCS Reggio Emilia, 42122 Reggio Emilia, Italy.
| | - Laura Orian
- Department of Chemical Sciences, University of Padova, 35131 Padova, Italy; National Institute of Nuclear Physics, National Laboratories of Legnaro (INFN-LNL), 35020 Legnaro, Padova, Italy.
| | - Valerio Di Marco
- Department of Chemical Sciences, University of Padova, 35131 Padova, Italy.
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Cui LJ, Li Y, Leyva-Parra L, Tiznado W, Pan S, Cui ZH. Revisiting the Structure and Bonding in Li 5H 6- and the Exploration of Reactivity: Planar Pentacoordinate Hydrogen. J Phys Chem A 2024; 128:4806-4813. [PMID: 38839423 DOI: 10.1021/acs.jpca.4c02684] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2024]
Abstract
Recently, Guha and co-workers (Sarmah, K.; Kalita, A.; Purkayastha, S.; Guha, A. K. Pushing The Extreme of Multicentre Bonding: Planar Pentacoordinate Hydride. Angew. Chem. Int. Ed. 2024, e202318741) reported a highly intriguing bonding motif: planar pentacoordinate hydrogen (ppH) in Li5H6-, featuring C2v symmetry in the singlet state with two distinct H-Li (center-ring) bond distances. We herein revisited the potential energy surface of Li5H6- by using a target-oriented genetic algorithm. Our investigation revealed that the lowest-energy structure of Li5H6- exhibits a ppH configuration with very high D5h symmetry and a 1A1' electronic state. We did not find any electronic effect like Jahn-Teller distortion that could be responsible for lowering its symmetry. Moreover, our calculations demonstrated significant differences in the relative energies of other low-lying isomers. An energetically very competitive planar tetracoordinate hydrogen (ptH) isomer is also located, but it corresponds to a very shallow minimum on the potential energy surface depending on the used level of theory. Chemical bonding analyses, including AdNDP and EDA-NOCV, uncover that the optimal Lewis structure for Li5H6- involves H- ions stabilized by the Li5H5 crown. Surprisingly, despite the dominance of electrostatic interactions, the contribution from covalent bonding is also significant between ppH and the Li5H5 moiety, derived from H-(1s) → Li5H5 σ donation. Magnetically induced current density analysis revealed that due to minimal orbital overlap and the highly polar nature of the H-Li covalent interaction, the ppH exhibits local diatropic ring currents around the H centers, which fails to result in a global aromatic ring current. The coordination of Li5H6- with Lewis acids, BH3 and BMe3, instantly converts the ppH configuration to (quasi) ptH. These Lewis acid-bound ptH complexes show high electronic stability and high thermochemical stability against dissociation and, therefore, will be ideal candidates for the experimental realization.
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Affiliation(s)
- Li-Juan Cui
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Yahui Li
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Luis Leyva-Parra
- Centro de Química Teórica & Computacional (CQT&C), Facultad de Ciencias Exactas, Departamento de Ciencias Químicas, Universidad Andrés Bello, Avenida República 275, Santiago de Chile 8370146, Chile
| | - William Tiznado
- Centro de Química Teórica & Computacional (CQT&C), Facultad de Ciencias Exactas, Departamento de Ciencias Químicas, Universidad Andrés Bello, Avenida República 275, Santiago de Chile 8370146, Chile
| | - Sudip Pan
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Zhong-Hua Cui
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
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Shen H, Head-Gordon M. Occupied-Virtual Orbitals for Chemical Valence with Applications to Charge Transfer in Energy Decomposition Analysis. J Phys Chem A 2024. [PMID: 38900728 DOI: 10.1021/acs.jpca.4c02364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/22/2024]
Abstract
In this article, we introduce the occupied-virtual orbitals for chemical valence (OVOCV). The OVOCVs can replace or complement the closely related idea of the natural orbitals for chemical valence (NOCV). The input is a difference density matrix connecting any initial single determinant to any final determinant, at a given molecular geometry, and a given one-particle basis. This arises in problems such as orbital rearrangement or charge transfer (CT) in energy decomposition analysis (EDA). The OVOCVs block-diagonalize the density difference operator into 2 × 2 blocks, which are spanned by one level that is filled in the initial state (the occupied OVOCV) and one that is empty (the virtual OVOCV). By contrast, the NOCVs fully diagonalize the density difference matrix and therefore are orbitals with mixed occupied-virtual character. Use of the OVOCVs makes it much easier to identify the donor and acceptor orbitals. We also introduce two different types of EDA methods with the OVOCVs and, most importantly, a charge decomposition analysis method that fixes the unreasonably large CT amount obtained directly from NOCV analysis. The square of the CT amount associated with each NOCV pair emerges as the appropriate value from the OVOCV analysis. When connecting the same initial and final states, this value is identical to the CT amount obtained from the independent absolutely localized molecular orbital (ALMO) complementary occupied-virtual orbital pair (COVP) analysis. The total, summed over all pairs, is also exactly the same as the independently suggested excitation number, as proved herein. Several examples are presented to compare NOCVs and OVOCVs: stretched H2+, a strong halogen bond between tetramethylthiourea and iodine, coordination of ethene in Zeise's salt, and binding in the Cp3La···C≡NCy complex.
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Affiliation(s)
- Hengyuan Shen
- Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Martin Head-Gordon
- Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
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Cui LJ, Liu YQ, Wang MH, Yan B, Pan S, Cui ZH, Frenking G. Multiple Bonding in AeN - (Ae=Ca, Sr, Ba). Chemistry 2024; 30:e202400714. [PMID: 38622057 DOI: 10.1002/chem.202400714] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Revised: 04/14/2024] [Accepted: 04/15/2024] [Indexed: 04/17/2024]
Abstract
Quantum chemical calculations using ab initio methods at the MRCI+Q(8,9)/def2-QZVPPD and CCSD(T)/def2-QZVPPD levels as well as using density functional theory are reported for the diatomic molecules AeN- (Ae=Ca, Sr, Ba). The anions CaN- and SrN- have electronic triplet (3Π) ground states with nearly identical bond dissociation energies De ~57 kcal/mol calculated at the MRCI+Q(8,9)/def2-QZVPPD level. In contrast, the heavier homologue BaN- has a singlet (1Σ+) ground state, which is only 1.1 kcal/mol below the triplet (3Σ-) state. The computed bond dissociation energy of (1Σ+) BaN- is 68.4 kcal/mol. The calculations at the CCSD(T)-full/def2-QZVPPD and BP86-D3(BJ)/def2-QZVPPD levels are in reasonable agreement with the MRCI+Q(8,9)/def2-QZVPPD data, except for the singlet (1Σ+) state, which has a large multireference character. The calculated atomic partial charges given by the CM5, Voronoi and Hirshfeld methods suggest small to medium-sized Ae←N- charge donation for most electronic states. In contrast, the NBO method predicts for all species medium to large Ae→N- electronic charge donation, which is due to the neglect of the (n)p AOs of Ae atoms as genuine valence orbitals. Neither the bond orders nor the bond lengths correlate with the bond dissociation energies. The EDA-NOCV calculations show that the heavier alkaline earth atoms Ca, Sr, Ba use their (n)s and (n-1)d orbitals for covalent bonding.
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Affiliation(s)
- Li-Juan Cui
- Institute of Atomic and Molecular Physics, Jilin University, Changchun, 130023, China
| | - Yu-Qian Liu
- Institute of Atomic and Molecular Physics, Jilin University, Changchun, 130023, China
| | - Meng-Hui Wang
- Institute of Atomic and Molecular Physics, Jilin University, Changchun, 130023, China
| | - Bing Yan
- Institute of Atomic and Molecular Physics, Jilin University, Changchun, 130023, China
| | - Sudip Pan
- Institute of Atomic and Molecular Physics, Jilin University, Changchun, 130023, China
| | - Zhong-Hua Cui
- Institute of Atomic and Molecular Physics, Jilin University, Changchun, 130023, China
| | - Gernot Frenking
- State Key Laboratory of Materials-Oriented Chemical Engineering, School of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing, 211816, China
- Philipps-Universität Marburg, Hans-Meerwein-Strasse 4, D-35043, Marburg, Germany
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Buchner MR, Kreuzer LK, Thomas-Hargreaves LR, Müller M, Ivlev SI, Frenking G, Pan S. Mono-Ortho-Beryllated Carbodiphosphoranes: Synthesis, Structure, Bonding and Reactivity. Chemistry 2024; 30:e202400966. [PMID: 38530217 DOI: 10.1002/chem.202400966] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2024] [Revised: 03/26/2024] [Accepted: 03/26/2024] [Indexed: 03/27/2024]
Abstract
The reaction of organoberyllium compounds with hexaphenylcarbodiphosphorane yields mono-ortho-beryllated complexes, which feature a double dative Be=C bond. The bonding situation in these compounds together with a simple carbodiphosphorane and an N-heterocyclic carbene adduct was analysed with energy decomposition analysis in combination with natural orbital for chemical valence as well as with quantum theory of atoms-in-molecules. Furthermore, the driving forces accountable for mono-ortho-beryllation were elucidated along with the reactivity of the Be=C bond.
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Affiliation(s)
- Magnus R Buchner
- Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Straße 4, 35032, Marburg, Germany
| | - Lukas K Kreuzer
- Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Straße 4, 35032, Marburg, Germany
| | | | - Matthias Müller
- Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Straße 4, 35032, Marburg, Germany
| | - Sergei I Ivlev
- Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Straße 4, 35032, Marburg, Germany
| | - Gernot Frenking
- Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Straße 4, 35032, Marburg, Germany
| | - Sudip Pan
- Sudip Pan, Institute of Atomic and Molecular Physics, Jilin University, Changchun, 130023, China
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Liu YQ, Kalita AJ, Zhang HY, Cui LJ, Yan B, Guha AK, Cui ZH, Pan S. BeM(CO)3- (M = Co, Rh, Ir) and BeM(CO)3 (M = Ni, Pd, Pt): Triply bonded terminal beryllium in zero oxidation state. J Chem Phys 2024; 160:184308. [PMID: 38738611 DOI: 10.1063/5.0181343] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Accepted: 04/25/2024] [Indexed: 05/14/2024] Open
Abstract
We perform detailed potential energy surface explorations of BeM(CO)3- (M = Co, Rh, Ir) and BeM(CO)3 (M = Ni, Pd, Pt) using both single-reference and multireference-based methods. The present results at the CASPT2(12,12)/def2-QZVPD//M06-D3/def2-TZVPPD level reveal that the global minimum of BeM(CO)3- (M = Co, Rh, Ir) and BePt(CO)3 is a C3v symmetric structure with an 1A1 electronic state, where Be is located in a terminal position bonded to M along the center axis. For other cases, the C3v symmetric structure is a low-lying local minimum. Although the present complexes are isoelectronic with the recently reported BFe(CO)3- complex having a B-Fe quadruple bond, radial orbital-energy slope (ROS) analysis reveals that the highest occupied molecular orbital (HOMO) in the title complexes is slightly antibonding in nature, which bars a quadruple bonding assignment. Similar weak antibonding nature of HOMO in the previously reported BeM(CO)4 (M = Ru, Os) complexes is also noted in ROS analysis. The bonding analysis through energy decomposition analysis in combination with the natural orbital for chemical valence shows that the bonding between Be and M(CO)3q (q = -1 for M = Co, Rh, Ir and q = 0 for M = Ni, Pd, Pt) can be best described as Be in the ground state (1S) interacting with M(CO)30/- via dative bonds. The Be(spσ) → M(CO)3q σ-donation and the complementary Be(spσ) ← M(CO)3q σ-back donation make the overall σ bond, which is accompanied by two weak Be(pπ) ← M(CO)3q π-bonds. These complexes represent triply bonded terminal beryllium in an unusual zero oxidation state.
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Affiliation(s)
- Yu-Qian Liu
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Amlan J Kalita
- Department of Chemistry, University of Science & Technology, Meghalaya, Ri-Bhoi, Meghalaya 793101, India
| | - Hui-Yu Zhang
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Li-Juan Cui
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Bing Yan
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Ankur K Guha
- Advanced Computational Chemistry Centre, Department of Chemistry, Cotton University, Panbazar, Guwahati, Assam 781001, India
| | - Zhong-Hua Cui
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
- Key Laboratory of Physics and Technology for Advanced Batteries (Ministry of Education), Jilin University, Changchun 130023, China
| | - Sudip Pan
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
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Gopinath JS, Parameswaran P. Pentacycloundecanylidene and pentacycloundecanone - hyperconjugatively stabilized carbene and ketone. Phys Chem Chem Phys 2024; 26:13452-13462. [PMID: 38647394 DOI: 10.1039/d4cp01248h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/25/2024]
Abstract
Pentacycloundecanylidene was spectroscopically identified during the photolysis of the corresponding aziridine and its aerial oxidation results in the corresponding ketone. Here we report the role of hyperconjugative interactions in stabilizing the singlet pentacycloundecanylidene and its corresponding ketone pentacycloundecanone. The pentacycloundecanylidene possesses a singlet ground state with two possible geometrical isomers based on the orientation of the carbene bridge (U1 and U2). The energy difference between U1 and U2 is minimal (0.9 kcal mol-1) and the triplet state is 5.6 kcal mol-1 energetically higher than the more stable singlet state U1. The proximal C-C bonds of the carbene bridge in the singlet state are significantly elongated as compared to the distal C-C bonds. The bending of the carbene bridge in the triplet state and the carbonyl group in the ketone are minimal as compared to the parent pentacycloundecane. The molecular orbital (MO), natural bond orbital (NBO) and energy decomposition analysis (EDA) show that both Cieplak-type hyperconjugation viz. donation of electrons from the proximal C-C σ bonds to the empty p-orbital on the carbene centre and Felkin-Anh type hyperconjugation viz. donation of the lone pair of carbene carbon to the distal C-C σ* orbitals exist in carbene systems. The bending of the carbene bridge in singlet carbene is to enhance the Cieplak-type hyperconjugative interaction. The ketone is also stabilized by Cieplak-type hyperconjugative interaction but to a lower extent as compared to the singlet carbene. The reactivity study suggests that the singlet pentacycloundecanylidene is ambiphilic in nature.
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Affiliation(s)
- Jishnu Sai Gopinath
- Department of Chemistry, National Institute of Technology Calicut, Kozhikode, Kerala 673601, India.
| | - Pattiyil Parameswaran
- Department of Chemistry, National Institute of Technology Calicut, Kozhikode, Kerala 673601, India.
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Purkayastha SK, Rohman SS, Parameswaran P, Guha AK. Beryllium carbonyl Be(CO) n ( n = 1-4) complex: a p-orbital analogy of Dewar-Chatt-Duncanson model. Phys Chem Chem Phys 2024; 26:12573-12579. [PMID: 38595189 DOI: 10.1039/d4cp00908h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/11/2024]
Abstract
Transition metal-carbonyl bonds are rationalized by M ← CO σ donation and M → CO π back donation where the d orbital of the transition metal is involved. This bonding model provided by Dewar, Chatt and Duncanson (DCD) has rationalized many transition metal-ligand bonds. The involvement of p orbital in such a DCD model can be intriguing. Alkaline earth metals with ns2np0 configuration may appear suitable as ns0np2 excitation has been recognized in many complexes. Herein, a theoretical study is presented for the Be(CO)n (n = 1-4) complex to verify this assumption. Detailed electronic structure analyses confirmed the involvement of the p orbital of beryllium in M → CO π back donation, thereby supporting the hypothesis. EDA-NOCV results reveal that the π-back donation from the central Be atom to CO ligands significantly predominates over the σ donation from the ligands for both Be(CO)3 and Be(CO)4. Our calculations reveal that Be(CO)4 is the highest carbonyl that may be experimentally detected.
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Affiliation(s)
- Siddhartha K Purkayastha
- Advanced Computational Chemistry Centre, Cotton University, Panbazar, Guwahati, Assam, 781001, India.
| | - Shahnaz S Rohman
- Department of Chemistry, National Institute of Technology Calicut, Kozhikode, 673601, India.
| | - Pattiyil Parameswaran
- Department of Chemistry, National Institute of Technology Calicut, Kozhikode, 673601, India.
| | - Ankur K Guha
- Advanced Computational Chemistry Centre, Cotton University, Panbazar, Guwahati, Assam, 781001, India.
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Liu P, Han J, Chen Y, Yu H, Zhou X, Zhang W. Binding Strengths and Orientations in CO 2 Adsorption on Cationic Scandium Oxides: Governing Factor Revealed by a Combined Infrared Spectroscopy and Theoretical Study. J Phys Chem A 2024; 128:3007-3014. [PMID: 38581407 DOI: 10.1021/acs.jpca.4c01562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/08/2024]
Abstract
Carbon dioxide (CO2) adsorption is a critical step to curbing carbon emissions from fossil fuel combustion. Among various options, transition metal oxides have received extensive attention as promising CO2 adsorbents due to their affordability and sustainability for large-scale use. Here, the nature of binding interactions between CO2 molecules and cationic scandium oxides of different sizes, i.e., ScO+, Sc2O2+, and Sc3O4+, is investigated by mass-selective infrared photodissociation spectroscopy combined with quantum chemical calculations. The well-accepted electrostatic considerations failed to provide explanations for the trend in the binding strengths and variations in the binding orientations between CO2 and metal sites of cationic scandium oxides. The importance of orbital interactions in the driving forces for CO2 adsorption on cationic scandium oxides was revealed by energy decomposition analyses. A molecular surface property, known as the local electron attachment energy, is introduced to elucidate the binding affinity and orientation-specific reactivity of cationic scandium oxides upon the CO2 attachment. This study not only reveals the governing factor in the binding behaviors of CO2 adsorption on cationic scandium oxides but also serves as an archetype for predicting and rationalizing favorable binding sites and orientations in extended surface-adsorbate systems.
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Affiliation(s)
- Pengcheng Liu
- Anhui Institute of Optics and Fine Mechanics, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei 230031, China
- Science Island Branch, Graduate School, University of Science and Technology of China, Hefei 230026, China
| | - Jia Han
- Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei 230026, China
| | - Yan Chen
- Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Haili Yu
- Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Xiaoguo Zhou
- Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei 230026, China
- Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Weijun Zhang
- Anhui Institute of Optics and Fine Mechanics, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei 230031, China
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Bai Y, Xian A, Yang X, Zhou M, Zhao X, Zhao L. Mechanistic study of the Ni-catalyzed hydroalkylation of 1,3-dienes: The origins of regio- and enantioselectivities and a further rational design. J Comput Chem 2024; 45:610-621. [PMID: 38058240 DOI: 10.1002/jcc.27277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Revised: 11/07/2023] [Accepted: 11/11/2023] [Indexed: 12/08/2023]
Abstract
The development of the catalytic regio- and enantioselective hydrofunctionalization of 1,3-dienes remains a challenge and requires deep insight into the reaction mechanisms. We herein thoroughly studied the reaction mechanism of the Ni-catalyzed hydroalkylation of 1,3-dienes with ketones by density functional theory (DFT) calculations. It reveals that the reaction is initiated by stepwise oxidative addition of EtO-H followed by 1,3-diene migratory insertion to generate the alkylnickel(II) intermediate, rather than the experimentally proposed ligand-to-ligand hydrogen transfer (LLHT) mechanism. In addition, we rationalized the role of t BuOK in the subsequent addition of enolate of ketone and transmetalation process. Based on the whole catalysis, the CC reductive elimination step, turns out to be the rate- and enantioselectivity-determining step. Furthermore, we disclosed the origins of the regio- and enantioselectivity of the product, and found that the 1,2-selectivity lies in the combination effects of the ligand-substrate electrostatic interactions, orbital interactions and Pauli repulsions, while the enantioselectivity mainly arises from substrate-ligand steric repulsions. Based on mechanistic study, new biaryl bisphosphine ligands affording higher enantioselectivity were designed, which will help to improve current catalytic systems and develop new transition-metal-catalyzed hydroalkylations.
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Affiliation(s)
- Yuna Bai
- School of Chemistry and Molecular Engineering, State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, China
| | - Anmei Xian
- School of Chemistry and Molecular Engineering, State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, China
| | - Xing Yang
- School of Chemistry and Molecular Engineering, State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, China
| | - Ming Zhou
- School of Chemistry and Molecular Engineering, State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, China
| | - Xuefei Zhao
- School of Chemistry and Molecular Engineering, State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, China
| | - Lili Zhao
- School of Chemistry and Molecular Engineering, State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, China
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Saha R, Skjelstad BB, Pan S. In Silico Design and Characterization of a New Molecular Electride: Li@Calix[3]Pyrrole. Chemistry 2024:e202400448. [PMID: 38622984 DOI: 10.1002/chem.202400448] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 04/10/2024] [Accepted: 04/15/2024] [Indexed: 04/17/2024]
Abstract
Electrides, in which anionic electrons are localized independently of the atoms in the compound, have shown promise, especially as catalysts and optoelectronic materials. Here, we present a new computationally designed molecular electride, Li@calix[3]pyrrole (Li@C3P). Electron density and electron localization function analyses unequivocally confirm the existence of localized electride electron density, outside the system, independent of any specific atoms. Non-covalent interaction plots further validate the character of the isolated localized electron, suggesting that the system can be accurately represented by Li+@calix[3]pyrrole ⋅ e-, denoting its distinct charge separation. The remarkable non-linear optical properties of Li@C3P, including average polarizability,α ‾ ${\bar{\alpha }}$ =412.4 au, first hyperpolarizability, β=4.46×104 au, and second hyperpolarizability,γ ∥ ${{\gamma }_{\parallel }}$ =18.40×106 au, are unparalleled in the previously reported and similar Li@C4P molecular electride. Furthermore, energy decomposition analysis in combination with natural orbital for chemical valence theory sheds light on the mechanism of electron density transfer from Li to the C3P cage, yielding the charge-separated Li@C3P complex. In addition to the electron transfer, a key factor to its electride nature is the electronic structure of the CnP cage, which has its lowest unoccupied molecular orbital located in the void adjacent to the N-H groups at the back of the bowl-shaped CnP cage.
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Affiliation(s)
- Ranajit Saha
- Department of Chemistry, Cooch Behar Panchanan Barma University, Cooch Behar, West Bengal, 736101, India
| | - Bastian Bjerkem Skjelstad
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford, Mansfield Road, Oxford, OX1 3TA, United Kingdom
| | - Sudip Pan
- Institute of Atomic and Molecular Physics, Jilin University, Changchun, 130023, China
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12
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Qin L, Liu YQ, Liu R, Yang X, Cui ZH, Zhao L, Pan S, Fau S, Frenking G. Analysis of the Unusual Chemical Bonds and Dipole Moments of AeF - (Ae=Be-Ba): A Lesson in Covalent Bonding. Chemistry 2024; 30:e202304136. [PMID: 38206568 DOI: 10.1002/chem.202304136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 01/10/2024] [Accepted: 01/11/2024] [Indexed: 01/12/2024]
Abstract
Quantum chemical calculations of the anions AeF- (Ae=Be-Ba) have been carried out using ab initio methods at the CCSD(T)/def2-TZVPP level and density functional theory employing BP86 with various basis sets. The detailed bonding analyses using different charge- and energy partitioning methods show that the molecules possess three distinctively different dative bonds in the lighter species with Ae=Be, Mg and four dative bonds when Ae=Ca, Sr, Ba. The occupied 2p atomic orbitals (AOs) and to a lesser degree the occupied 2s AO of F- donate electronic charge into the vacant spx(σ) and p(π) orbitals of Be and Mg which leads to a triple bond Ae F-. The heavier Ae atoms Ca, Sr, Ba use their vacant (n-1)d AOs as acceptor orbitals which enables them to form a second σ donor bond with F- that leads to quadruply bonded Ae F- (Ae=Ca-Ba). The presentation of molecular orbitals or charge distribution using only one isodensity value may give misleading information about the overall nature of the orbital or charge distribution. Better insights are given by contour line diagrams. The ELF calculations provide monosynaptic and disynaptic basins of AeF- which nicely agree with the analysis of the occupied molecular orbitals and with the charge density difference maps. A particular feature of the covalent bonds in AeF- concerns the inductive interaction of F- with the soft valence electrons in the (n)s valence orbitals of Ae. The polarization of the (n)s2 electrons induces a (n)spx hybridized lone-pair orbital at atom Ae, which yields a large dipole moment with the negative end at Ae. The concomitant formation of a vacant (n)spx AO of atom Ae, which overlaps with the occupied 2p(σ) AO of F-, leads to a strong covalent σ bond.
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Affiliation(s)
- Lei Qin
- State Key Laboratory of Materials-Oriented Chemical Engineering, School of Chemistry and Molecular Engineering, Nanjing Tech University, 211816, Nanjing, China
| | - Yu-Qian Liu
- Institute of Atomic and Molecular Physics, Jilin University, 130023, Changchun, China
| | - Ruiqin Liu
- State Key Laboratory of Materials-Oriented Chemical Engineering, School of Chemistry and Molecular Engineering, Nanjing Tech University, 211816, Nanjing, China
| | - Xing Yang
- State Key Laboratory of Materials-Oriented Chemical Engineering, School of Chemistry and Molecular Engineering, Nanjing Tech University, 211816, Nanjing, China
| | - Zhong-Hua Cui
- Institute of Atomic and Molecular Physics, Jilin University, 130023, Changchun, China
| | - Lili Zhao
- State Key Laboratory of Materials-Oriented Chemical Engineering, School of Chemistry and Molecular Engineering, Nanjing Tech University, 211816, Nanjing, China
| | - Sudip Pan
- Institute of Atomic and Molecular Physics, Jilin University, 130023, Changchun, China
| | - Stefan Fau
- Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Strasse 4, D-35043, Marburg, Germany
| | - Gernot Frenking
- State Key Laboratory of Materials-Oriented Chemical Engineering, School of Chemistry and Molecular Engineering, Nanjing Tech University, 211816, Nanjing, China
- Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Strasse 4, D-35043, Marburg, Germany
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13
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Oestereich T, Tonner-Zech R, Westermayr J. Decoding energy decomposition analysis: Machine-learned Insights on the impact of the density functional on the bonding analysis. J Comput Chem 2024; 45:368-376. [PMID: 37909259 DOI: 10.1002/jcc.27244] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Revised: 10/06/2023] [Accepted: 10/11/2023] [Indexed: 11/03/2023]
Abstract
The concept of chemical bonding is a crucial aspect of chemistry that aids in understanding the complexity and reactivity of molecules and materials. However, the interpretation of chemical bonds can be hindered by the choice of the theoretical approach and the specific method utilized. This study aims to investigate the effect of choosing different density functionals on the interpretation of bonding achieved through energy decomposition analysis (EDA). To achieve this goal, a data set was created, representing four bonding groups and various combinations of functionals and dispersion correction schemes. The calculations showed significant variation among the different functionals for the EDA terms, with the dispersion correction terms exhibiting the highest variability. More information was extracted by using machine learning in combination with dimensionality reduction on the data set. Results indicate that, despite the differences in the EDA terms obtained from different functionals, the functional has the least significant impact, suggesting minimal influence on the bonding interpretation.
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Affiliation(s)
- Toni Oestereich
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, Universität Leipzig, Leipzig, Germany
| | - Ralf Tonner-Zech
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, Universität Leipzig, Leipzig, Germany
| | - Julia Westermayr
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, Universität Leipzig, Leipzig, Germany
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14
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Kushvaha SK, Kallenbach P, Gorantla SMNVT, Herbst-Irmer R, Stalke D, Roesky HW. Preparation of a Compound with a Si II -Si IV -Si II Bonding Arrangement. Chemistry 2024; 30:e202303113. [PMID: 37933699 DOI: 10.1002/chem.202303113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Revised: 11/06/2023] [Accepted: 11/06/2023] [Indexed: 11/08/2023]
Abstract
Herein, we report the synthesis of a rare bis-silylene, 1, in which two SiII atoms are bridged by a SiIV atom. Compound 1 contains an unusual SiII -SiIV -SiII bonding arrangement with SiII -SiIV bond distances of 2.4212(8) and 2.4157(7) Å. Treatment of 1 with Fe(CO)5 afforded a dinuclear Fe0 complex 2 with two unusually long Si-Si bonds (2.4515(8) and 2.4488(10) Å). We have also carried out a detailed computational study to understand the nature of the Si-Si bonds in these compounds. Natural bond orbital (NBO) and energy decomposition analysis-natural orbital for chemical valence (EDA-NOCV) analyses reveal that the Si-Si bonds in 1 and 2 are of an electron-sharing nature.
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Affiliation(s)
| | - Paula Kallenbach
- Institut für Anorganische Chemie, Georg-August Universität, Göttingen, Germany
| | - Sai Manoj N V T Gorantla
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Tromsø-The Arctic University of Norway, 9037, Tromsø, Norway
| | - Regine Herbst-Irmer
- Institut für Anorganische Chemie, Georg-August Universität, Göttingen, Germany
| | - Dietmar Stalke
- Institut für Anorganische Chemie, Georg-August Universität, Göttingen, Germany
| | - Herbert W Roesky
- Institut für Anorganische Chemie, Georg-August Universität, Göttingen, Germany
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15
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Xu J, Pan S, Yao S, Lorent C, Teutloff C, Zhang Z, Fan J, Molino A, Krause KB, Schmidt J, Bittl R, Limberg C, Zhao L, Frenking G, Driess M. Stabilizing Monoatomic Two-Coordinate Bismuth(I) and Bismuth(II) Using a Redox Noninnocent Bis(germylene) Ligand. J Am Chem Soc 2024; 146:6025-6036. [PMID: 38408197 PMCID: PMC10921399 DOI: 10.1021/jacs.3c13016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Revised: 02/05/2024] [Accepted: 02/06/2024] [Indexed: 02/28/2024]
Abstract
The formation of isolable monatomic BiI complexes and BiII radical species is challenging due to the pronounced reducing nature of metallic bismuth. Here, we report a convenient strategy to tame BiI and BiII atoms by taking advantage of the redox noninnocent character of a new chelating bis(germylene) ligand. The remarkably stable novel BiI cation complex 4, supported by the new bis(iminophosphonamido-germylene)xanthene ligand [(P)GeII(Xant)GeII(P)] 1, [(P)GeII(Xant)GeII(P) = Ph2P(NtBu)2GeII(Xant)GeII(NtBu)2PPh2, Xant = 9,9-dimethyl-xanthene-4,5-diyl], was synthesized by a two-electron reduction of the cationic BiIIII2 precursor complex 3 with cobaltocene (Cp2Co) in a molar ratio of 1:2. Notably, owing to the redox noninnocent character of the germylene moieties, the positive charge of BiI cation 4 migrates to one of the Ge atoms in the bis(germylene) ligand, giving rise to a germylium(germylene) BiI complex as suggested by DFT calculations and X-ray photoelectron spectroscopy (XPS). Likewise, migration of the positive charge of the BiIIII2 cation of 3 results in a bis(germylium)BiIIII2 complex. The delocalization of the positive charge in the ligand engenders a much higher stability of the BiI cation 4 in comparison to an isoelectronic two-coordinate Pb0 analogue (plumbylone; decomposition below -30 °C). Interestingly, 4[BArF] undergoes a reversible single-electron transfer (SET) reaction (oxidation) to afford the isolable BiII radical complex 5 in 5[BArF]2. According to electron paramagnetic resonance (EPR) spectroscopy, the unpaired electron predominantly resides at the BiII atom. Extending the redox reactivity of 4[OTf] employing AgOTf and MeOTf affords BiIII(OTf)2 complex 7 and BiIIIMe complex 8, respectively, demonstrating the high nucleophilic character of BiI cation 4.
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Affiliation(s)
- Jian Xu
- Metalorganic
and Inorganic Materials, Department of Chemistry, Technische Universität Berlin, 10623 Berlin, Germany
| | - Sudip Pan
- Institute
of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Shenglai Yao
- Metalorganic
and Inorganic Materials, Department of Chemistry, Technische Universität Berlin, 10623 Berlin, Germany
| | - Christian Lorent
- Physical
and Biophysical Chemistry, Department of Chemistry, Technische Universität Berlin, 10623 Berlin, Germany
| | | | - Zhaoyin Zhang
- State
Key Laboratory of Materials-Oriented Chemical Engineering, School
of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing 211816, China
| | - Jun Fan
- Metalorganic
and Inorganic Materials, Department of Chemistry, Technische Universität Berlin, 10623 Berlin, Germany
| | - Andrew Molino
- Department
of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne 3086 Victoria, Australia
| | | | - Johannes Schmidt
- Functional
Materials, Department of Chemistry, Technische
Universität Berlin, 10623 Berlin, Germany
| | - Robert Bittl
- Fachbereich
Physik, Freie Universität Berlin, 14195 Berlin, Germany
| | - Christian Limberg
- Institut
für Chemie, Humboldt-Universität
zu Berlin, 12489 Berlin, Germany
| | - Lili Zhao
- State
Key Laboratory of Materials-Oriented Chemical Engineering, School
of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing 211816, China
| | - Gernot Frenking
- State
Key Laboratory of Materials-Oriented Chemical Engineering, School
of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing 211816, China
- Fachbereich
Chemie, Philipps-Universität Marburg, 35032 Marburg, Germany
| | - Matthias Driess
- Metalorganic
and Inorganic Materials, Department of Chemistry, Technische Universität Berlin, 10623 Berlin, Germany
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16
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Kuntar SP, Ghosh A, Ghanty TK. Theoretical prediction of donor-acceptor type novel complexes with strong noble gas-boron covalent bond. Phys Chem Chem Phys 2024; 26:4975-4988. [PMID: 38258349 DOI: 10.1039/d3cp02667a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2024]
Abstract
The experimental identification of NgBeO molecules, followed by the recent theoretical exploration of super-strong NgBO+ (Ng = He-Rn) ions motivated us to investigate the stability of iso-electronic NgBNH+ (Ng = He-Rn) ions using various ab initio-based quantum chemical methods. The hydrogen-like chemical behavior of gold in small clusters and molecules also inspired us to study the nature of the bonding interactions in NgBNAu+ ions compared to that in NgBNH+ ions. The calculated Ng-B bond lengths in the predicted ions have been found to be much lower than the corresponding covalent limits, indicating a covalent Ng-B interaction in both the NgBNH+ and NgBNAu+ ions. In addition, the Ng-B bond dissociation energies are found to be in the range of 136.7-422.8 kJ mol-1 for NgBNH+ and 77.4-319.1 kJ mol-1 for NgBNAu+, implying the stable nature of the predicted ions. Interestingly, the Ng-B bond length (except for Ne) is the lowest reported to date together with the highest He-B and Ne-B binding energies considering all the neutral and cationic complexes containing Ng-B bonding motifs. Moreover, the natural bonding orbital (NBO) and electron density-based atoms-in-molecule (AIM) analysis reveal the covalent nature of the Ng-B bond in the predicted ions. Furthermore, the energy decomposition analysis together with the natural bond orbital in the chemical valence (EDA-NOCV) studies indicate that the orbital interaction energy is the main contributor to the total attraction energy in the Ng-B bonds. All the calculated results indicate the hydrogen-like chemical behavior of gold in the predicted NgBNM+ ions, showing further evidence of the concept of "gold-hydrogen analogy". Also, for comparison, the corresponding Cu and Ag analogs are investigated. All the computed results together with the experimental identification of the NgMX (Ng = Ar-Xe; M = Cu, Ag, Au; X = F, Cl), ArOH+, and NgBeO (Ng = Ar-Xe) systems clearly indicate that it may be possible to prepare and characterize the predicted NgBNM+ ions experimentally using suitable technique(s).
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Affiliation(s)
- Subrahmanya Prasad Kuntar
- Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400 094, India
- Bio-Science Group, Bhabha Atomic Research Centre, Mumbai 400 085, India.
| | - Ayan Ghosh
- Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400 094, India
- Laser and Plasma Technology Division, Beam Technology Development Group, Bhabha Atomic Research Centre, Mumbai 400 085, India
| | - Tapan K Ghanty
- Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400 094, India
- Bio-Science Group, Bhabha Atomic Research Centre, Mumbai 400 085, India.
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17
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Cui LJ, Dong X, Liu YQ, Pan S, Cui ZH. Transition Metal Behavior of Heavier Alkaline Earth Elements in Doped Monocyclic and Tubular Boron Clusters. Inorg Chem 2024; 63:653-660. [PMID: 38146259 DOI: 10.1021/acs.inorgchem.3c03536] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2023]
Abstract
Quantum chemical calculations are carried out to design highly symmetric-doped boron clusters by employing the transition metal behavior of heavier alkaline earth (Ae = Ca, Sr, and Ba) metals. Following an electron counting rule, a set of monocyclic and tubular boron clusters capped by two heavier Ae metals were tested, which leads to the highly symmetric Ae2B8, Ae2B18, and Ae2B30 clusters as true minima on the potential energy surface having a monocyclic ring, two-ring tubular, and three-ring tubular boron motifs, respectively. Then, a thorough global minimum (GM) structural search reveals that a monocyclic B8 ring capped with two Ae atoms is indeed a GM for Ca2B8 and Ba2B8, while for Sr2B8 it is a low-lying isomer. Similarly, the present search also unambiguously shows the most stable isomers of Ae2B18 and Ae2B30 to be highly symmetric two- and three-ring tubular boron motifs, respectively, capped with two Ae atoms on each side of the tube. In these Ae-doped boron clusters, in addition to the electrostatic interactions, a substantial covalent interaction, specifically the bonding occurring between (n - 1)d orbitals of Ae and delocalized orbitals of boron motifs, provides the essential driving force behind their highly symmetrical structures and overall stability.
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Affiliation(s)
- Li-Juan Cui
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Xue Dong
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Yu-Qian Liu
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Sudip Pan
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Zhong-Hua Cui
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
- Key Laboratory of Physics and Technology for Advanced Batteries (Ministry of Education), Jilin University, Changchun 130023, China
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18
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Bachir N, Kenouche S, Martínez-Araya JI. The effect of {O,N}=X⋯M={Ti,Zr,Hf} interactions on the sensitivity of CNO 2 trigger bonds in FOX-7: Approach based on the QTAIM/EDA-NOCV analysis. J Mol Graph Model 2024; 126:108645. [PMID: 37812869 DOI: 10.1016/j.jmgm.2023.108645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Revised: 09/27/2023] [Accepted: 09/27/2023] [Indexed: 10/11/2023]
Abstract
The local chemical reactivity of FOX-7 (1,1-diamino-2,2-nitroethylene, also known as DADNE from DiAminoDiNitroEthylene) was elucidated through a quantitative study of the electrostatic potential on the molecular surface, topological analysis based on Bader's theory, and the EDA-NOCV method. Unlike (O2N)2CC(NH2)H2N⋯Cp2MCH3+ complexes, which exhibit both σ-donor and π-acceptor features, the situation is different concerning the (H2N)2CC(NO2)(O)NO⋯Cp2MCH3+ complexes, where both charge transfers correspond to the σ-donation. The two charge transfers reinforce each other, resulting in increased stability for (H2N)2CC(NO2)(O)NO⋯Cp2MCH3+. This seems to strengthen the (H2N)2CC(NO2)(O)NO⋯M={Ti,Zr,Hf} bond, which may explain the high stability of (H2N)2CC(NO2)(O)NO⋯Cp2MCH3+ compared to (O2N)2CC(NH2)-H2N⋯Cp2MCH3+. Results from topological analysis revealed that the decreased sensitivity to decomposition of CNO2 bonds depends on the chemical nature of the interacting metal, and the best achievements are obtained for the Hf-based complex. Our results demonstrate that the interaction of M={Ti,Zr,Hf} with CNO2 is more favourable than that with CNH2, this specific action on the trigger bond may support the use of Metallocene Methyl Cations (MMC) as possible neutralisers.
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Affiliation(s)
- Nassima Bachir
- Group of Modeling of Chemical Systems using Quantum Calculations, Applied Chemistry Laboratory (LCA). University M. Khider of Biskra, 07000 Biskra, Algeria
| | - Samir Kenouche
- Group of Modeling of Chemical Systems using Quantum Calculations, Applied Chemistry Laboratory (LCA). University M. Khider of Biskra, 07000 Biskra, Algeria
| | - Jorge I Martínez-Araya
- Departamento de Ciencias Químicas, Facultad de Ciencias Exactas, Universidad Andres Bello (UNAB), Av. República 275, 8370146 Santiago, Chile; Centro de Química Teórica y Computacional (CQT&C). Facultad de Ciencias Exactas, Santiago, Chile.
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19
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Chen M, Zhang Z, Liu J, Li G, Zhao L, Mo Z. Isolation and Reactivity of Homoleptic Diphosphene Lead Complexes. Angew Chem Int Ed Engl 2023; 62:e202312837. [PMID: 37837247 DOI: 10.1002/anie.202312837] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 10/12/2023] [Accepted: 10/13/2023] [Indexed: 10/15/2023]
Abstract
Due to their limited capacity for π-backdonation, isolation of π-complexes of main-group elements remains a great challenge. We report herein the synthesis of a homoleptic diphosphene lead complex (2) from the degradation of P4 with a bis(germylene)-stabilized Pb(0) complex. Structural and computational studies showed that 2 possesses significant π bonding interactions between Pb atom and diphosphene ligands, which is reminiscent of transition-metal diphosphene complexes. Consistent with its unique electronic structure, complex 2 can deliver Pb(0) atoms to perform redox reaction with an iminoquinone to produce a cyclic plumbylene (4) and perform 2,5-dimethyl-3,4-dimethylimidazol-1-ylidene (IMe2 Me2 ) induced phosphorus cation abstraction to give an anionic PbP3 complex (6).
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Affiliation(s)
- Ming Chen
- State Key Laboratory and Institute of Elemento-Organic Chemistry, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin, 300071, China
| | - Zhaoyin Zhang
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, Nanjing, 211816, China
| | - Jun Liu
- State Key Laboratory of Medicinal Chemical Biology, Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Center for Analytical Science, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin, 300071, China
| | - Gongyu Li
- State Key Laboratory of Medicinal Chemical Biology, Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Center for Analytical Science, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin, 300071, China
| | - Lili Zhao
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, Nanjing, 211816, China
| | - Zhenbo Mo
- State Key Laboratory and Institute of Elemento-Organic Chemistry, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin, 300071, China
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20
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Fei Z, Wang JQ, Tang R, Lu Y, Han C, Wang Y, Hong J, Dong C, Hu HS, Xiong XG, Ning C, Liu H, Li J. The unusual quadruple bonding of nitrogen in ThN. Nat Commun 2023; 14:7677. [PMID: 37996410 PMCID: PMC10667236 DOI: 10.1038/s41467-023-43208-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Accepted: 11/02/2023] [Indexed: 11/25/2023] Open
Abstract
Nitrogen has five valence electrons and can form a maximum of three shared electron-pair bonds to complete its octet, which suggests that its maximum bond order is three. With a joint anion photoelectron spectroscopy and quantum chemistry investigation, we report herein that nitrogen presents a quadruple bonding interaction with thorium in ThN. The quadruple Th≣N bond consists of two electron-sharing Th-N π bonds formed between the Th-6dxz/6dyz and N 2px/2py orbitals, one dative Th←N σ bond and one weak Th←N σ bonding interaction formed between Th-6dz2 and N 2s/2pz orbitals. The ThC molecule has also been investigated and proven to have a similar bonding pattern as ThN. Nonetheless, due to one singly occupied σ-bond, ThC is assigned a bond order of 3.5. Moreover, ThC has a longer bond length as well as a lower vibrational frequency in comparison with ThN.
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Affiliation(s)
- Zejie Fei
- Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Jia-Qi Wang
- Department of Chemistry, Tsinghua University, Beijing, 100084, China
- College of Science, Beijing Forestry University, Beijing, 100083, China
| | - Rulin Tang
- Department of Physics, State Key Laboratory of Low Dimensional Quantum Physics, Collaborative Innovation Center of Quantum Matter, Tsinghua University, Beijing, 100084, China
| | - Yuzhu Lu
- Department of Physics, State Key Laboratory of Low Dimensional Quantum Physics, Collaborative Innovation Center of Quantum Matter, Tsinghua University, Beijing, 100084, China
| | - Changcai Han
- Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Yongtian Wang
- Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Jing Hong
- Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Changwu Dong
- Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Han-Shi Hu
- Department of Chemistry, Tsinghua University, Beijing, 100084, China
| | - Xiao-Gen Xiong
- Sino-French Institute of Nuclear Engineering and Technology, Sun Yat-sen University, Zhuhai, 519082, China.
| | - Chuangang Ning
- Department of Physics, State Key Laboratory of Low Dimensional Quantum Physics, Collaborative Innovation Center of Quantum Matter, Tsinghua University, Beijing, 100084, China.
| | - Hongtao Liu
- Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China.
| | - Jun Li
- Department of Chemistry, Tsinghua University, Beijing, 100084, China
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21
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Xu YH, Tian WJ, Muñoz-Castro A, Frenking G, Sun ZM. An all-metal fullerene: [K@Au 12Sb 20] 5. Science 2023; 382:840-843. [PMID: 37972185 DOI: 10.1126/science.adj6491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2023] [Accepted: 10/04/2023] [Indexed: 11/19/2023]
Abstract
The C60 fullerene molecule has attracted tremendous interest for its distinctive nearly spherical structure. By contrast, all-metal counterparts have been elusive: Fullerene-like clusters composed of noncarbon elements typically suffer from instability, resulting in more compact geometries that require multiple embedded atoms or external ligands for stabilization. In this work, we present the synthesis of an all-metal fullerene cluster, [K@Au12Sb20]5-, using a wet-chemistry method. The cluster's structure was determined by single crystal x-ray diffraction, which revealed a fullerene framework consisting of 20 antimony atoms. Theoretical calculations further indicate that this distinct cluster exhibits aromatic behavior.
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Affiliation(s)
- Yu-He Xu
- State Key Laboratory of Elemento-Organic Chemistry, Tianjin Key Lab of Rare Earth Materials and Applications, School of Materials Science and Engineering, Nankai University, Tianjin 300350, China
| | - Wen-Juan Tian
- Institute of Molecular Science, Shanxi University, Taiyuan 030006, China
| | - Alvaro Muñoz-Castro
- Facultad de Ingeniería, Arquitectura y Diseño, Universidad San Sebastián, Bellavista 7, Santiago 8420524, Chile
| | - Gernot Frenking
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing 211816, China
- Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Strasse 4, 35043 Marburg, Germany
| | - Zhong-Ming Sun
- State Key Laboratory of Elemento-Organic Chemistry, Tianjin Key Lab of Rare Earth Materials and Applications, School of Materials Science and Engineering, Nankai University, Tianjin 300350, China
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22
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Parvathy P, Parameswaran P. Organometallic Allene [(μ-C)(Fe(CO) 4 ) 2 ]: Bridging Carbon Showing Transformation from Classical Electron-Sharing Bonding to Double σ-Donor and Double π-Acceptor Ligation. Chemphyschem 2023; 24:e202300528. [PMID: 37563865 DOI: 10.1002/cphc.202300528] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Revised: 08/10/2023] [Accepted: 08/11/2023] [Indexed: 08/12/2023]
Abstract
Allenes (R2 C=C=CR2 ) have been traditionally perceived to feature localized orthogonal π-bonds between the carbon centres. We have carried out quantum-mechanical studies of the organometallic allenes envisioned by the isolobal replacement of the terminal CH2 groups by the d8 Fe(CO)4 fragment. Our studies have identified two organometallic allenes viz. D2d symmetric [(μ-C)(Fe(CO)4 )2 ] (2) and D3 symmetric [(μ-C)(Fe(CO)4 )2 ] (3) with trigonal bipyramidal coordination at the Fe atoms. Compound 2 features the bridging carbon atom in an equatorial position with respect to the ligands on the TM centre, while 3 features the central carbon atom in an axial position. The bis-pseudoallylic anionic delocalisation proposed in the C2-C1-C3 spine of organic allene is retained in the organometallic allene 2, and is transformed to a typical three-centre bis-allylic anionic delocalisation in the organometallic allene 3. The topological analysis of electron density also indicates a bis-allylic anionic type delocalisation in the organometallic allenes. The quantitative bonding analysis using the EDA-NOCV method suggests a transition from classical electron-sharing bonding between the central carbon atom and the terminal groups in 1 to donor-acceptor bonding in 3. Meanwhile, both electron-sharing and donor-acceptor bonding models are found to be probable heuristic bonding representations in the organometallic allene 2.
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Affiliation(s)
- Parameswaran Parvathy
- Department of Chemistry, National Institute of Technology Calicut, Kerala, 673601, India
| | - Pattiyil Parameswaran
- Department of Chemistry, National Institute of Technology Calicut, Kerala, 673601, India
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23
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Ding C, Pan S, Yan GR, N V T Gorantla SM, Cui ZH, Frenking G. Stabilization of Cyclic C 4 by Four Donor Ligands: A Theoretical Study of (L) 4C 4 (L = Carbene). J Phys Chem A 2023; 127:9196-9205. [PMID: 37883781 DOI: 10.1021/acs.jpca.3c04943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2023]
Abstract
Quantum chemical studies using density functional theory were carried out for the (L)4C4 complexes with L = cAAC, DAC, NHC, SNHC, MIC1, and MIC2. The results show that the title complexes are highly stable with respect to dissociation, (L)4C4 → C4 + 4L. However, their stability with respect to (L)4C4 → 2(L)2C2 is crucial for the assessment of their experimental viability. The (L)4C4 complexes with L = cAAC and DAC dissociate exergonically at room temperature into two (L)2C2 units. In contrast, the other (L)4C4 complexes with L = NHC, SNHC, MIC1, and MIC2 are thermochemically stable with respect to dissociation, (L)4C4 → 2(L)2C2. The computed adiabatic ionization potentials of (L)4C4 complexes with L = NHC, MIC1, and MIC2 are lower than those for the cesium atom. Particularly, (MIC1)4C4 and (MIC2)4C4 will very easily lose electrons to form cationic complexes. The SNHC ligand is the best for the experimental realization of (L)4C4 complexes, followed by NHC. The bonding analysis using charge and energy decomposition methods suggests that the (L)3C4-CL bond can be best described as a typical electron-sharing double bond with a strong σ-bond and a weaker π-bond. Therefore, the core bonding pictures in the title complexes resemble a [4]radialene. Larger substituents at the carbene ligands enhance the stability of the complexes (L)4C4 against dissociation.
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Affiliation(s)
- Chengxiang Ding
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Sudip Pan
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Gai-Ru Yan
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Sai Manoj N V T Gorantla
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Tromsø─The Arctic University of Norway, Tromsø N-9037, Norway
| | - Zhong-Hua Cui
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130023, China
| | - Gernot Frenking
- Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Straße, Marburg 35032, Germany
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, Nanjing 211816, China
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24
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Goli M, Bressanini D, Shahbazian S. On the nature of the two-positron bond: evidence for a novel bond type. Phys Chem Chem Phys 2023; 25:29531-29547. [PMID: 37905569 DOI: 10.1039/d3cp03003b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2023]
Abstract
The nature of the newly proposed two-positron bond in (PsH)2, which is composed of two protons, four electrons and two positrons, is considered in this contribution. The study is done at the multi-component-Hartree-Fock (MC-HF) and the Diffusion Monte Carlo (DMC) levels of theory by comparing ab initio data, analyzing the spatial structure of the DMC wavefunction, and applying the multi-component quantum theory of atoms in molecules and the two-component interacting quantum atoms energy partitioning schemes to the MC-HF wavefunction. The analysis demonstrates that (PsH)2 to a good approximation may be conceived of as two slightly perturbed PsH atoms, bonded through a two-positron bond. In contrast to the usual two-electron bonds, the positron exchange phenomenon is quite marginal in the considered two-positron bond. The dominant stabilizing mechanism of bonding is a novel type of classical electrostatic interaction between the positrons, which are mainly localized between nuclei, and the surrounding electrons. To emphasize its uniqueness, this mechanism of bonding is proposed to be called gluonic which has also been previously identified as the main driving mechanism behind formation of the one-positron bond in [H-,e+,H-]. We conclude that the studied two-positron bond should not be classified as a covalent bond and it must be seen as a brand-new type of bond, foreign to the electronic bonding modes discovered so far in the purely electronic systems.
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Affiliation(s)
- Mohammad Goli
- School of Nano Science, Institute for Research in Fundamental Sciences (IPM), Tehran 19395-5531, Iran.
| | - Dario Bressanini
- Dipartimento di Scienza e Alta Tecnologia, Università dell'Insubria, Como, Italy.
| | - Shant Shahbazian
- Department of Physics, Shahid Beheshti University, Evin, Tehran 19839-69411, Iran.
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25
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Suthar S, Mondal KC. Open shell versus closed shell bonding interaction in cyclopropane derivatives: EDA-NOCV analyses. J Comput Chem 2023; 44:2184-2211. [PMID: 37530758 DOI: 10.1002/jcc.27190] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 06/19/2023] [Accepted: 06/21/2023] [Indexed: 08/03/2023]
Abstract
Cyclopropane ring is a very common motif in organic/bio-organic compounds. The chemical bonding of this strained ring is taught to all chemistry students. This three-membered cyclic, C3 ring is quite reactive which has attracted both, synthetic and theoretical chemists to rationalize/correlate its stability and bonding with its reactivity and physical properties over a century. There are a few bonding models (mainly the Bent-Bond model and Walsh model) of this C3 ring that are debated to date. Herein, we have carried out energy decomposition analysis coupled with natural orbital for chemical valence (EDA-NOCV) to study the two most reactive bonds of cyclopropane rings of 49 different organic compounds containing different functional groups to obtain a much deeper bonding insight toward a more general bonding model of this class of compounds. The EDA-NOCV analyses of fragment orbitals and susequent bond formation revealed that the nature of the CC bond of the cyclopropane (splitting two bonds at a time out of three CC bonds) ring is preferred to form two dative covalent CC bonds (between a singlet olefin-fragment and an excited singlet carbene-fragment with a vacant sp2 orbital and a filled p-orbital) for the majority (37/49) of compounds over two covalent electron sharing bonds in some (7/49) compounds (between an excited triplet olefin and triplet carbene), while a few (5/49) compounds show flexibility to adopt either the electron sharing or dative covalent bond as both are equally possible. The effects of functional groups on the nature of chemical bond in cyclopropane rings have been studied in detail. Our bonding analyses are in line with the QTAIM analyses which produce small negative values of the Laplacian, significantly positive values of bond ellipticity, and accumulation of electron densities around the ring critical point of C3 -rings. These corresponding QTAIM parameters of C3 -rings are quite different for CC single bonds of normal hydrocarbons as expected. The chemical bonding in the majority of cyclopropane rings can be very similar to those of metal-olefin systems.
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Affiliation(s)
- Sonam Suthar
- Department of Chemistry, Indian Institute of Technology Madras, Chennai, India
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26
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Kalkuhl TL, Qin L, Zhao L, Frenking G, Hadlington TJ. On the σ-complex character of bis(gallyl)/digallane transition metal species. Chem Sci 2023; 14:11088-11095. [PMID: 37860650 PMCID: PMC10583741 DOI: 10.1039/d3sc03772j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Accepted: 09/21/2023] [Indexed: 10/21/2023] Open
Abstract
σ-complexes of homoatomic E-E bonds are key intermediates in catalytically relevant oxidative addition reactions, but are as yet unknown for the group 13 elements. Here, stable species best described as σ-complexes of a 1,2-dichlorodigallane derivative with Ni and Pd are reported. They are readily accessed through the combination of a 1,2-dichlorodigallane derivative, which features chelating phosphine functionalities, with Ni0 and Pd0 synthons. In-depth computational analyses of these complexes importantly reveal considerable Ga-Ga bonding interactions in both Ni and Pd complexes, despite the expected elongation of the Ga-Ga bond upon complexation, suggestive of σ-complex character as opposed to more commonly described bis(gallyl) character. Finally, the well-defined disproportion of the Ni complex is described, leading to a unique GaI-nickel complex, with concomitant expulsion of uncomplexed GaIII species.
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Affiliation(s)
- Till L Kalkuhl
- Fakultät für Chemie, Technische Universität München Lichtenberg Strasse 4 85747 Garching Germany
| | - Lei Qin
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University Nanjing China
| | - Lili Zhao
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University Nanjing China
| | - Gernot Frenking
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University Nanjing China
- Fachbereich Chemie, Philipps-Universität Marburg Hans-Meerwein-Strasse D-35043 Marburg Germany
| | - Terrance J Hadlington
- Fakultät für Chemie, Technische Universität München Lichtenberg Strasse 4 85747 Garching Germany
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27
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Parvathy P, Parameswaran P. Inorganometallic allenes [(Mn(η 5-C 5H 5)(CO) 2) 2(μ-E)] (E = Si-Pb): bis-allylic anionic delocalisation similar to organometallic allene but differential σ-donation and π-backdonation. Phys Chem Chem Phys 2023; 25:26526-26537. [PMID: 37752826 DOI: 10.1039/d3cp03211f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/28/2023]
Abstract
The chemistry of heavy group-14 tetrel atoms is known to diverge from that of the lighter congener carbon. Here, we report the structure and bonding in inorganometallic allenes [(MnCp(CO)2)2(μ-E)] (2E, E = Si-Pb; Cp = η5-C5H5). These inorganometallic allenes are structurally similar to the lighter organometallic analog [(MnCp(CO)2)2(μ-C)] (2C). The bonding analysis of these compounds at the M06/def2-TZVPP//BP86/def2-SVP level of theory identifies a linear Mn-E-Mn spine with delocalised, mutually orthogonal π-systems across this back-bone. This results in a bis-allylic anionic bonding scenario. However, the strength of the Mn-E bonding is found to be weaker in these inorganometallic allenes. The energy decomposition analysis at the BP86/TZ2P//BP86/def2-SVP level of theory further reveals that the bonding in these compounds cannot be represented by one unique heuristic bonding model, but multiple bonding models. For all 2E (E = C-Pb), the Dewar-Chatt-Duncanson bonding model is one of the best bonding representations, where the central tetrel atom acts as a 4e- σ-donor and 4e- π-acceptor. The bonding analysis indicates that the carbon atom in the organometallic allene acts as a better π-acceptor than σ-donor, while the heavier tetrel atoms in the inorganometallic allenes are better σ-donors than π-acceptors. The npz-orbital is found to be a better σ-donor than the valence ns-orbital. However, when the bonding representation is changed to a traditional electron-sharing model, the contribution from the ns-orbital was found to be the largest in comparison to the interaction from the remaining three valence np-orbitals. It can be suggested that the ns-orbitals contribute more towards chemical bonding when participating via an electron-sharing interaction than a donor-acceptor interaction.
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Affiliation(s)
- Parameswaran Parvathy
- Department of Chemistry, National Institute of Technology Calicut, Kerala, 673601, India.
| | - Pattiyil Parameswaran
- Department of Chemistry, National Institute of Technology Calicut, Kerala, 673601, India.
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28
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Li X, Hu L, Lu G, Wang Y. Carbon-Bonding Metal Catalysis (CBMC): A Supramolecular Complex Directs Structural-Isomer Selection in Gold-Catalyzed Reactions. J Am Chem Soc 2023; 145:21554-21561. [PMID: 37668596 DOI: 10.1021/jacs.3c07551] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/06/2023]
Abstract
Carbon is a primary element to constitute organic molecules, while metal catalysis is a basic tool in organic synthesis. The establishment of a link between the ubiquitous carbon bonding and metal catalysis is thus a fundamentally important problem. However, there is yet no experimental example to introduce the role of carbon bonding in a metal catalysis process. Herein, we merged the topics of carbon bonding and metal catalysis together and demonstrated that a supramolecular carbon-bonding metal complex can not only give rise to catalytic activity but, more remarkably, direct structural-isomer selection events in gold-catalyzed reactions. The experimental results unveil the fact that the imposing of weak carbon-bonding interactions on a gold complex can alter the carbene as well as the Lewis acid property of these catalysts. These results illustrate a non-negligible role of weak carbon-bonding interactions in the modulation of metal catalysis. As such, carbon-bonding metal catalysis is suggested to be used as a routine tool not only in the development of reactions but more frequently in analyzing reaction processes in metal catalysis.
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Affiliation(s)
- Xinxin Li
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry of the Ministry of Education, Shandong University, Jinan 250100, P. R. China
| | - Lingfei Hu
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry of the Ministry of Education, Shandong University, Jinan 250100, P. R. China
| | - Gang Lu
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry of the Ministry of Education, Shandong University, Jinan 250100, P. R. China
| | - Yao Wang
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry of the Ministry of Education, Shandong University, Jinan 250100, P. R. China
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29
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Maharana R, Bhanja R, Mal P, Samanta K. Investigation of the Effect of Solvents on the Synthesis of Aza-flavanone from Aminochalcone Facilitated by Halogen Bonding. ACS OMEGA 2023; 8:33785-33793. [PMID: 37744869 PMCID: PMC10515354 DOI: 10.1021/acsomega.3c04207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Accepted: 08/18/2023] [Indexed: 09/26/2023]
Abstract
It has been recognized that CBr4 can give rise to a noncovalent interaction known as halogen bond (XB). CBr4 was found to catalyze, in terms of XB formation, the transformation of 2'-aminochalcone to aza-flavanone through an intramolecular Michael addition reaction. The impact of XB and the resulting yield of aza-flavanone exhibited a pronounced dependence on the characteristics of the solvent. Notably, yields of 88% in ethanol and 33% in DMSO were achieved, while merely a trace amount of the product was detected in benzene. In this work, we use a computational modeling study to understand this variance in yield. The reaction is modeled at the level of density functional theory (based on the M06-2X exchange-correlation functional) with all-electron basis sets of triple-ζ quality. Grimme's dispersion correction is incorporated to account for the noncovalent interactions accurately. Harmonic frequency calculations are carried out to establish the character of the optimized structures (minimum or saddle point). Our calculations confirm the formation of an XB between CBr4 and the reacting species and its role in lowering the activation energy barrier. Stronger orbital interactions and significant lowering of the steric repulsion were found to be important in lowering the activation barrier. The negligible yield in the nonpolar solvent benzene may be attributed to the high activation energy as well as the inadequate stabilization of the zwitterionic intermediate. In ethanol, a protic solvent, additional H-bonding contributes to further lowering of the activation barrier and better stabilization of the zwitterionic intermediate. The combined effects of solvent polarity, XB, and H-bond are likely to give rise to an excellent yield of aza-flavanone in ethanol.
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Affiliation(s)
- Rajat
Rajiv Maharana
- School
of Basic Sciences, Indian Institute of Technology
Bhubaneswar, Argul, Odisha 752050, India
| | - Rosalin Bhanja
- School
of Chemical Sciences, National Institute
of Science Education and Research (NISER), An OCC of Homi Bhabha National
Institute, Bhubaneswar, PO Bhimpur-Padanpur, Via Jatni, District Khurda, Odisha 752050, India
| | - Prasenjit Mal
- School
of Chemical Sciences, National Institute
of Science Education and Research (NISER), An OCC of Homi Bhabha National
Institute, Bhubaneswar, PO Bhimpur-Padanpur, Via Jatni, District Khurda, Odisha 752050, India
| | - Kousik Samanta
- School
of Basic Sciences, Indian Institute of Technology
Bhubaneswar, Argul, Odisha 752050, India
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30
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MacLeod-Carey D, Rodríguez-Kessler PL, Muñoz-Castro A. Cl@Si 20X 20 cages: evaluation of encapsulation nature, structural rigidity, and 29Si-NMR patterns using relativistic DFT calculations. Phys Chem Chem Phys 2023. [PMID: 37455622 DOI: 10.1039/d3cp02371k] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/18/2023]
Abstract
The experimental characterization of Cl@Si20 endohedral clusters, featuring different ligands such as [Cl@Si20H20]- (1) [Cl@Si20H12Cl8]- (2), and [Cl@Si20Cl20]- (3), provides insight into the variable encapsulation environment for chloride anions. The favorable formation of such species enables the evaluation of the encapsulation nature and the role of the inner anion in the rigidity of the overall cluster. Our results show a sizable interaction which increases as -66.7, -100.8, and -130.3 kcal mol-1 from 1 to 3, respectively, featuring electrostatic character. The orbital interaction involves 3p-Cl → Si20X20 and 3s-Cl → Si20X20 charge transfer channels and a slight contribution from London dispersion-type interactions. These results show that the inner bonding environment can be modified by the choice of exobonded ligands. Moreover, 29Si-NMR parameters are depicted in terms of the chemical shift anisotropy (CSA), leading to a strong variation of the three principal tensor components (δ11, δ22, δ33), unraveling the origin of the experimental 29Si-NMR chemical shift (δiso) differences along the given series. Thus, the Si20 cage is a useful template to further evaluate different environments for encapsulating atomic species.
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Affiliation(s)
- Desmond MacLeod-Carey
- Laboratorio de Química Inorgánica y Materiales Moleculares, Facultad de Ingenieria, Universidad Autónoma de Chile, Llano Subercaceaux 2801, San Miguel, Santiago, Chile.
| | - Peter L Rodríguez-Kessler
- Centro de Investigaciones en Óptica A.C. (CIO), Loma del Bosque 115, Col. Lomas del Campestre, León, Guanajuato, 37150, Mexico.
| | - Alvaro Muñoz-Castro
- Facultad de Ingeniería, Arquitectura y Diseño, Universidad San Sebastián, Bellavista 7, Santiago, 8420524, Chile.
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31
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Gimferrer M, Salvador P. Exact decompositions of the total KS-DFT exchange-correlation energy into one- and two-center terms. J Chem Phys 2023; 158:234105. [PMID: 37326158 DOI: 10.1063/5.0142778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Accepted: 05/25/2023] [Indexed: 06/17/2023] Open
Abstract
In the so-called Interacting Quantum Atoms (IQA) approach, the molecular energy is numerically decomposed as a sum of atomic and diatomic contributions. While proper formulations have been put forward for both Hartree-Fock and post-Hartree-Fock wavefunctions, this is not the case for the Kohn-Sham density functional theory (KS-DFT). In this work, we critically analyze the performance of two fully additive approaches for the IQA decomposition of the KS-DFT energy, namely, the one from Francisco et al., which uses atomic scaling factors, and that from Salvador and Mayer based upon the bond order density (SM-IQA). Atomic and diatomic exchange-correlation (xc) energy components are obtained for a molecular test set comprising different bond types and multiplicities and along the reaction coordinate of a Diels-Alder reaction. Both methodologies behave similarly for all systems considered. In general, the SM-IQA diatomic xc components are less negative than the Hartree-Fock ones, which is in good agreement with the known effect of electron correlation upon (most) covalent bonds. In addition, a new general scheme to minimize the numerical error of the sum of two-electron energy contributions (i.e., Coulomb and exact exchange) in the framework of overlapping atoms is described in detail.
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Affiliation(s)
- Martí Gimferrer
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, Maria Aurèlia Capmany 69, 17003 Girona, Catalonia, Spain
| | - Pedro Salvador
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, Maria Aurèlia Capmany 69, 17003 Girona, Catalonia, Spain
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32
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Wang X, Lei B, Zhang Z, Chen M, Rong H, Song H, Zhao L, Mo Z. Isolation and characterization of bis(silylene)-stabilized antimony(I) and bismuth(I) cations. Nat Commun 2023; 14:2968. [PMID: 37221189 DOI: 10.1038/s41467-023-38606-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2022] [Accepted: 05/10/2023] [Indexed: 05/25/2023] Open
Abstract
Monovalent group 15 cations L2Pn + (L = σ-donor ligands, Pn = N, P, As, Sb, Bi) have attracted significant experimental and theoretical interest because of their unusual electronic structures and growing synthetic potential. Herein, we describe the synthesis of a family of antimony(I) and bismuth(I) cations supported by a bis(silylene) ligand [(TBDSi2)Pn][BArF4] (TBD = 1, 8, 10, 9-triazaboradecalin; ArF = 3,5-CF3-C6H3; Pn = Sb, (2); Bi, (3)). The structures of 2 and 3 have been unambiguously characterized spectroscopically and by X-ray diffraction analysis and DFT calculations. They feature bis-coordinated Sb and Bi atoms which exhibit two lone pairs of electrons. The reactions of 2 and 3 with methyl trifluoromethane sulfonate provide a approach for the preparation of dicationic antimony(III) and bismuth(III) methyl complexes. Compounds 2 and 3 serve as 2e donors to group 6 metals (Cr, Mo), giving rise to ionic antimony and bismuth metal carbonyl complexes 6-9.
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Affiliation(s)
- Xuyang Wang
- State Key Laboratory and Institute of Elemento-Organic Chemistry, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, 94 Weijin Road, 300071, Tianjin, China
| | - Binglin Lei
- State Key Laboratory and Institute of Elemento-Organic Chemistry, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, 94 Weijin Road, 300071, Tianjin, China
| | - Zhaoyin Zhang
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, 211816, Nanjing, China
| | - Ming Chen
- State Key Laboratory and Institute of Elemento-Organic Chemistry, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, 94 Weijin Road, 300071, Tianjin, China
| | - Hua Rong
- State Key Laboratory and Institute of Elemento-Organic Chemistry, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, 94 Weijin Road, 300071, Tianjin, China
| | - Haibin Song
- State Key Laboratory and Institute of Elemento-Organic Chemistry, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, 94 Weijin Road, 300071, Tianjin, China
| | - Lili Zhao
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, 211816, Nanjing, China.
| | - Zhenbo Mo
- State Key Laboratory and Institute of Elemento-Organic Chemistry, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, 94 Weijin Road, 300071, Tianjin, China.
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33
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Das S, Devi K, Suthar S, Mondal KC. Bonding and stability of elusive silaboryne (SiB) and germaboryne (GeB) with donor base ligands. J Comput Chem 2023. [PMID: 37177883 DOI: 10.1002/jcc.27118] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Revised: 03/28/2023] [Accepted: 04/06/2023] [Indexed: 05/15/2023]
Abstract
Stabilizing the exotic chemical species possessing multiple bonds is often extremely challenging due to insufficient orbital overlap, especially involving one heavier element. Bulky aryl groups and/or carbene as ligand have previously stabilized the SiSi, GeGe, and BB triple bonds. Herein, theoretical calculations have been carried out to shed light on the stability and bonding of elusive silaboryne/germaboryne (Si/GeB triple bond) stabilized by donor base ligands ((cAAC)BE(Me)(L); E = Si, L = cAACMe , NHCMe , PMe3 ; E = Ge, L = cAACMe ). The heavier analogues (Sn, Pb) have been further studied for comparison. Additionally, the effects of bulky substituents at the Si and N atoms on the structural parameters and stability of those species have been investigated. Energy decomposition analysis coupled with natural orbital for chemical valence (EDA-NOCV; for Si) showed that cAAC/NHC ligands could stabilize the exotic BSi-Me species more efficiently than PMe3 ligands. The BSi partial triple bond of the corresponding species possesses a mixture of one covalent electron sharing BSi σ-bond and two dative π-bonds (B ← Si, B → Si).
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Affiliation(s)
- Sujit Das
- Department of Chemistry, Indian Institute of Technology Madras, Chennai, India
| | - Kavita Devi
- Department of Chemistry, Indian Institute of Technology Madras, Chennai, India
| | - Sonam Suthar
- Department of Chemistry, Indian Institute of Technology Madras, Chennai, India
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34
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Parambath S, Thannimangalath V, Parameswaran P. Dative quadruple bonds between d 10 transition metals and beryllium in BeM(PMe 3 ) 2 and BeM(CO) 2 (M = Ni, Pd, and Pt) complexes: Transition metal fragments as six-electron donor and two-electron acceptor. J Comput Chem 2023; 44:1645-1652. [PMID: 37185971 DOI: 10.1002/jcc.27115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Revised: 04/01/2023] [Accepted: 04/04/2023] [Indexed: 05/17/2023]
Abstract
The structure, chemical bonding, and reactivity of neutral 16 valence electrons (VE) transition metal complexes of beryllium, BeM(PMe3 )2 (1M-Be) and BeM(CO)2 (2M-Be, M = Ni, Pd, and Pt) were studied. The molecular orbital and EDA-NOCV analysis suggest dative quadruple bonds between the transition metal and beryllium, viz., one Be→M σ bond, one Be←M σ bond, and two Be←M π bonds. The strength of these bonding interactions varies based on the ligands coordinated to the transition metal. The Be←M σ bond is stronger than the Be→M σ bond when the ligand is PMe3, whereas the reverse order is observed when the ligand is CO. This is attributed to the higher π acceptor strength of CO as compared to PMe3 . Since these complexes have M-Be dative quadruple bonds, the beryllium center is susceptible to ambiphilic reactivity, as indicated by high proton and hydride affinity values.
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Affiliation(s)
- Sneha Parambath
- Department of Chemistry, National Institute of Technology, Calicut, Kozhikode, India
| | | | - Pattiyil Parameswaran
- Department of Chemistry, National Institute of Technology, Calicut, Kozhikode, India
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35
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Guo Y, Lin W, Wang W, Zhang R, Liu T, Xu Y, Wei X, Yang Z. Unveiling the complexity of spatiotemporal soliton molecules in real time. Nat Commun 2023; 14:2029. [PMID: 37041171 PMCID: PMC10090195 DOI: 10.1038/s41467-023-37711-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Accepted: 03/28/2023] [Indexed: 04/13/2023] Open
Abstract
Observing the dynamics of 3D soliton molecules can hold great opportunities for unveiling the mechanism of molecular complexity and other nonlinear problems. In spite of this fantastic potential, real-time visualization of their dynamics occurring on femtosecond-to-picosecond time scales is still challenging, particularly when high-spatiotemporal-resolution and long-term observation are required. In this work, we observe the real-time speckle-resolved spectral-temporal dynamics of 3D soliton molecules for a long time interval using multispeckle spectral-temporal measurement technology. Diverse real-time dynamics of 3D soliton molecules are captured for the first time, including the speckle-resolved birth, spatiotemporal interaction, and internal vibration of 3D soliton molecules. Further studies show that nonlinear spatiotemporal coupling associated with a large average-chirp gradient over the speckled mode profile plays a significant role in these dynamics. These efforts may shed new light on decomposing the complexity of 3D soliton molecules, and create an analogy between 3D soliton molecules and chemical molecules.
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Affiliation(s)
- Yuankai Guo
- School of Physics and Optoelectronics, State Key Laboratory of Luminescent Materials and Devices, Guangdong Engineering Technology Research and Development Center of Special Optical Fiber Materials and Devices, Guangdong Provincial Key Laboratory of Fiber Laser Materials and Applied Techniques, South China University of Technology, 381 Wushan Road, Guangzhou, 510640, China
| | - Wei Lin
- School of Physics and Optoelectronics, State Key Laboratory of Luminescent Materials and Devices, Guangdong Engineering Technology Research and Development Center of Special Optical Fiber Materials and Devices, Guangdong Provincial Key Laboratory of Fiber Laser Materials and Applied Techniques, South China University of Technology, 381 Wushan Road, Guangzhou, 510640, China
| | - Wenlong Wang
- School of Physics and Optoelectronics, State Key Laboratory of Luminescent Materials and Devices, Guangdong Engineering Technology Research and Development Center of Special Optical Fiber Materials and Devices, Guangdong Provincial Key Laboratory of Fiber Laser Materials and Applied Techniques, South China University of Technology, 381 Wushan Road, Guangzhou, 510640, China
| | - Runsen Zhang
- School of Physics and Optoelectronics, State Key Laboratory of Luminescent Materials and Devices, Guangdong Engineering Technology Research and Development Center of Special Optical Fiber Materials and Devices, Guangdong Provincial Key Laboratory of Fiber Laser Materials and Applied Techniques, South China University of Technology, 381 Wushan Road, Guangzhou, 510640, China
| | - Tao Liu
- School of Physics and Optoelectronics, State Key Laboratory of Luminescent Materials and Devices, Guangdong Engineering Technology Research and Development Center of Special Optical Fiber Materials and Devices, Guangdong Provincial Key Laboratory of Fiber Laser Materials and Applied Techniques, South China University of Technology, 381 Wushan Road, Guangzhou, 510640, China
| | - Yiqing Xu
- Department of Physics, University of Auckland, Auckland, 1010, New Zealand
| | - Xiaoming Wei
- School of Physics and Optoelectronics, State Key Laboratory of Luminescent Materials and Devices, Guangdong Engineering Technology Research and Development Center of Special Optical Fiber Materials and Devices, Guangdong Provincial Key Laboratory of Fiber Laser Materials and Applied Techniques, South China University of Technology, 381 Wushan Road, Guangzhou, 510640, China.
| | - Zhongmin Yang
- School of Physics and Optoelectronics, State Key Laboratory of Luminescent Materials and Devices, Guangdong Engineering Technology Research and Development Center of Special Optical Fiber Materials and Devices, Guangdong Provincial Key Laboratory of Fiber Laser Materials and Applied Techniques, South China University of Technology, 381 Wushan Road, Guangzhou, 510640, China.
- Research Institute of Future Technology, South China Normal University, Guangzhou, Guangdong, 510006, China.
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36
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Qiao L, Yang T, Frenking G, Sun ZM. [Ga@Bi 10(NbMes) 2] 3-: a linear Nb-Ga I-Nb filament coordinated by a bismuth cage. Chem Commun (Camb) 2023; 59:4024-4027. [PMID: 36920786 DOI: 10.1039/d3cc00631j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/10/2023]
Abstract
In this work, we report a low-valent Ga(I) complex, [Ga@Bi10(NbMes)2]3-, with a linear Nb-Ga-Nb fragment, representing the first compound with Nb-Ga and Nb-Bi bonds. Quantum-chemical calculations reveal that the complex is an electron-precise cluster. The possible fragmentation pathway of the title cluster was studied by using electrospray ionization mass spectrometry and theoretical calculations.
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Affiliation(s)
- Lei Qiao
- State Key Laboratory of Element-Organic Chemistry, Tianjin Key Lab for Institution Rare Earth Materials and Applications, School of Materials Science and Engineering, Nankai University, Tianjin 300350, Tianjin, China.
| | - Tao Yang
- MOE Key Laboratory for Non-Equilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an 710049, Shaanxi, China.
| | - Gernot Frenking
- Donostia International Physics Center (DIPC), P.K. 1072, Donostia 20080, Euskadi, Spain.,Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Strasse 4, Marburg 35043, Germany
| | - Zhong-Ming Sun
- State Key Laboratory of Element-Organic Chemistry, Tianjin Key Lab for Institution Rare Earth Materials and Applications, School of Materials Science and Engineering, Nankai University, Tianjin 300350, Tianjin, China.
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37
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Jin X, Wang G, Zhou M. Mg(I)-Fe(-II) and Mg(0)-Mg(I) covalent bonding in the Mg nFe(CO) 4- ( n = 1, 2) anion complexes: an infrared photodissociation spectroscopic and theoretical study. Phys Chem Chem Phys 2023; 25:7697-7703. [PMID: 36866694 DOI: 10.1039/d2cp05719k] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]
Abstract
Heteronuclear magnesium-iron carbonyl anion complexes MgFe(CO)4- and Mg2Fe(CO)4- are produced in the gas phase and are detected by mass-selected infrared photodissociation spectroscopy in the carbonyl stretching frequency region. The geometric structures and the metal-metal bonding are discussed with the aid of quantum chemical calculations. Both complexes are characterized to have a doublet electronic ground state with C3v symmetry containing a Mg-Fe bond or a Mg-Mg-Fe bonding unit. Bonding analyses indicate that each complex involves an electron-sharing Mg(I)-Fe(-II) σ bond. The Mg2Fe(CO)4- complex involves a relatively weak covalent Mg(0)-Mg(I) σ bond.
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Affiliation(s)
- Xiaoyang Jin
- Collaborative Innovation Center of Chemistry for Energy Materials, Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysts and Innovative Materials, Fudan University Shanghai, Shanghai 200438, China.
| | - Guanjun Wang
- Collaborative Innovation Center of Chemistry for Energy Materials, Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysts and Innovative Materials, Fudan University Shanghai, Shanghai 200438, China.
| | - Mingfei Zhou
- Collaborative Innovation Center of Chemistry for Energy Materials, Department of Chemistry, Shanghai Key Laboratory of Molecular Catalysts and Innovative Materials, Fudan University Shanghai, Shanghai 200438, China.
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38
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Parambath S, Narayanan S J J, Parameswaran P. Five-membered N-heterocyclic beryllium(I) compounds: fluctuating electronic structures with ambiphilic reactivity. Dalton Trans 2023; 52:3378-3385. [PMID: 36810658 DOI: 10.1039/d2dt03263e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
The structure, bonding, and reactivity of the five-membered N-heterocyclic beryllium compounds (NHBe), BeN2C2H4 (1) and BeN2(CH3)2C2H2 (2) were studied at the M06/def2-TZVPP//BP86/def2-TZVPP level of theory. The molecular orbital analysis indicates that NHBe is an aromatic 6π-electron system with an unoccupied σ-type spn-hybrid orbital on Be. Energy decomposition analysis combined with natural orbitals for chemical valence has been carried out with Be and L (L = N2C2H4 (1), N2(CH3)2C2H2 (2)) in their different electronic states as fragments at the BP86/TZ2P level of theory. The results indicate that the best bonding representation can be considered as an interaction between Be+ having the 2s02px12py02pz0 electronic configuration and L-. Accordingly, L- forms two donor-acceptor σ-bonds and one electron sharing π-bond with Be+. Compounds 1 and 2 show high proton and hydride affinity at beryllium, indicating its ambiphilic reactivity. The protonated structure results from adding a proton on the lone pair of electrons in the doubly excited state. On the other hand, the hydride adduct is formed by donating electrons from the hydride to an unoccupied σ-type spn-hybrid orbital on Be. These compounds show very high exothermic reaction energy for adduct formation with two electron donor ligands such as cAAC, CO, NHC, and PMe3.
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Affiliation(s)
- Sneha Parambath
- Department of Chemistry, National Institute of Technology, Calicut, Kerala, India.
| | - Jishnu Narayanan S J
- Department of Chemistry, National Institute of Technology, Calicut, Kerala, India.
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39
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Hu L, Gao H, Hu Y, Wu YB, Lv X, Lu G. Origins of Regioselectivity in CuH-Catalyzed Hydrofunctionalization of Alkenes. J Org Chem 2023. [PMID: 36790843 DOI: 10.1021/acs.joc.2c02296] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2023]
Abstract
Factors controlling the regioselectivity in alkene hydrocupration were computationally investigated using energy decomposition analysis. The results demonstrate that the Markovnikov-selective hydrocupration with electronically activated mono-substituted olefins is mostly affected by the destabilizing Pauli repulsion, which is due to the electron delocalization effect. The anti-Markovnikov-selective hydrocupration with 1,1-dialkyl-substituted terminal olefins is dominated by the repulsive electrostatic interactions, which is because of the unequal π electron distribution caused by the induction effect of alkyl substituents.
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Affiliation(s)
- Lingfei Hu
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry, Ministry of Education, Shandong University, Jinan, Shandong 250100, China
| | - Han Gao
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry, Ministry of Education, Shandong University, Jinan, Shandong 250100, China
| | - Yanlei Hu
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry, Ministry of Education, Shandong University, Jinan, Shandong 250100, China
| | - Yan-Bo Wu
- Key Lab for Materials of Energy Conversion and Storage of Shanxi Province and Key Lab of Chemical Biology and Molecular Engineering of Ministry of Education, Institute of Molecular Science, Shanxi University, Taiyuan, Shanxi 030006, China
| | - Xiangying Lv
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry, Ministry of Education, Shandong University, Jinan, Shandong 250100, China
| | - Gang Lu
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry, Ministry of Education, Shandong University, Jinan, Shandong 250100, China
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40
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Kuntar SP, Ghosh A, Ghanty TK. Prediction of donor-acceptor-type novel noble gas complexes in the triplet electronic state. Phys Chem Chem Phys 2023; 25:6987-6994. [PMID: 36807359 DOI: 10.1039/d2cp05813h] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Closed-shell noble gas (Ng) compounds in the singlet electronic state have been extensively studied in the past two decades after the revolutionary discovery of 1HArF molecule. Motivated by the experimental identification of very strong donor-acceptor-type singlet-state Ng complex 1ArOH+, in the present article, for the first time, we report new donor-acceptor-type noble gas complexes in the triplet electronic state (3NgBeN+ (Ng = He-Rn)), where most of the Ng-Be bond lengths are smaller than the corresponding covalent limits. The newly proposed complexes are predicted to be stable by various computational tools, including coupled-cluster and multireference-based methods, with strong Ng-Be bonding (40.4-196.2 kJ mol-1). We have also investigated 3NgBeP+ (Ng = He-Rn) complexes for the purpose of comparison. Various computational results, including the structural parameters, bonding energies, vibrational frequencies, and atoms-in-molecule properties suggest that it may be possible to prepare and characterize these triplet state complexes through suitable experimental technique(s).
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Affiliation(s)
- Subrahmanya Prasad Kuntar
- Homi Bhabha National Institute, Training School complex, Anushaktinagar, Mumbai 400094, India.,Bio-Science Group, Bhabha Atomic Research Centre, Mumbai 400085, India.
| | - Ayan Ghosh
- Homi Bhabha National Institute, Training School complex, Anushaktinagar, Mumbai 400094, India.,Laser and Plasma Technology Division, Beam Technology Development Group, Bhabha Atomic Research Centre, Mumbai 400085, India
| | - Tapan K Ghanty
- Homi Bhabha National Institute, Training School complex, Anushaktinagar, Mumbai 400094, India.,Bio-Science Group, Bhabha Atomic Research Centre, Mumbai 400085, India.
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41
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Gao H, Hu L, Hu Y, Lv X, Wu YB, Lu G. Weak Electrostatic Interactions with Bisphosphine Ligands Facilitate Reductive Elimination of PhCF 3 from Pd(II) Complexes. Chem Asian J 2023; 18:e202201219. [PMID: 36583310 DOI: 10.1002/asia.202201219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Revised: 12/30/2022] [Accepted: 12/30/2022] [Indexed: 12/31/2022]
Abstract
The origins of ligand effects on PhCF3 reductive elimination from PdII complexes were computationally investigated by using energy decomposition analysis. The results indicate weak electrostatic interactions between ligands and Ph-Pd-CF3 lead to small barriers of PhCF3 reductive elimination. Two major factors affecting the electrostatic interactions are identified.
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Affiliation(s)
- Han Gao
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry, Ministry of Education, Shandong University, Jinan, Shandong, 250100, China
| | - Lingfei Hu
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry, Ministry of Education, Shandong University, Jinan, Shandong, 250100, China
| | - Yanlei Hu
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry, Ministry of Education, Shandong University, Jinan, Shandong, 250100, China
| | - Xiangying Lv
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry, Ministry of Education, Shandong University, Jinan, Shandong, 250100, China
| | - Yan-Bo Wu
- Key Lab for Materials of Energy Conversion and Storage of Shanxi Province and, Key Lab of Chemical Biology and Molecular Engineering of Ministry of Education, Institute of Molecular Science, Shanxi University, Taiyuan, Shanxi, 030006, China
| | - Gang Lu
- School of Chemistry and Chemical Engineering, Key Laboratory of Colloid and Interface Chemistry, Ministry of Education, Shandong University, Jinan, Shandong, 250100, China
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42
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Emerson-King J, Pan S, Gyton MR, Tonner-Zech R, Chaplin AB. Synthesis of a rhodium(III) dinitrogen complex using a calix[4]arene-based diphosphine ligand. Chem Commun (Camb) 2023; 59:2150-2152. [PMID: 36727440 PMCID: PMC9933454 DOI: 10.1039/d2cc06837k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
The synthesis and characterisation of the rhodium(III) dinitrogen complex [Rh(2,2'-biphenyl)(CxP2)(N2)]+ are described, where CxP2 is a trans-spanning calix[4]arene-based diphosphine and the dinitrogen ligand is projected into the cavity of the macrocycle.
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Affiliation(s)
- Jack Emerson-King
- Department of Chemistry, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK.
| | - Sudip Pan
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, Universität LeipzigLinnéstraße 2LeipzigD-04103Germany
| | - Matthew R. Gyton
- Department of Chemistry, University of WarwickGibbet Hill RoadCoventryCV4 7ALUK
| | - Ralf Tonner-Zech
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, Universität LeipzigLinnéstraße 2LeipzigD-04103Germany
| | - Adrian B. Chaplin
- Department of Chemistry, University of WarwickGibbet Hill RoadCoventryCV4 7ALUK
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43
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An isolable germylyne radical with a one-coordinate germanium atom. Nat Chem 2023; 15:200-205. [PMID: 36344822 DOI: 10.1038/s41557-022-01081-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Accepted: 09/29/2022] [Indexed: 11/09/2022]
Abstract
Carbynes (R-[Formula: see text]), species that bear a monovalent carbon atom with three non-bonding valence electrons, are important intermediates and potentially useful in organic synthetic chemistry. However, free species of the type R-[Formula: see text] of any group 14 element (E) have eluded isolation in the condensed phase due to their high reactivity. Here we report the isolation, characterization and reactivity of a crystalline germylyne radical by using a sterically hindered hydrindacene ligand. The germylyne radical bears an essentially one-coordinate germanium atom as shown by single-crystal X-ray diffraction analysis. Electron paramagnetic resonance spectroscopic studies and theoretical calculations show that the germylyne radical features a doublet ground state, and the three non-bonding valence electrons at the germanium atom contribute to the lone pair of electrons as the highest occupied molecular orbital-3 and one unpaired electron as the singly occupied molecular orbital.
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44
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Zhang C, Bai H, Hu J, Guo K, Zhao L. Computationally rational design of metal-involving halogen bonds with π-covalency: Structures and bonding analysis. J Comput Chem 2023; 44:480-488. [PMID: 36377670 DOI: 10.1002/jcc.27036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Revised: 09/22/2022] [Accepted: 09/27/2022] [Indexed: 11/16/2022]
Abstract
Traditional π-covalent interactions have been proved in the non-metal halogen bond adducts formed by chloride and halogenated triphenylamine-based radical cations. In this study, we have rationally designed two metal-involving halogen bond adducts with π-covalency property, such as [L1-Pd···I-PTZ]+ (i.e., 1) and [L2-Pd···I-PTZ]+ (i.e., 2), in which the square-planar palladium complexes serve as halogen bond acceptor and 3,7-diiodo-10H-phenothiazine radical cation (i.e., [I-PTZ]•+ ) acts as halogen bond donor. Noncovalent interaction analysis and quantum theory of atoms in molecules analysis revealed that there are notable halogen bond interactions along the Pd···I direction without genuine chemical bond formed in both designed adducts. Energy decomposition analysis together with natural orbital for chemical valence calculations were performed to gain insight into their bonding nature, which demonstrated the presence of remarkable π-covalent interactions and σ-covalent interactions in both 1 and 2. We therefore proposed a new strategy for building the metal-involving halogen bonds with π-covalency property, which will help the further development of new types of halogen bonds.
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Affiliation(s)
- Congcong Zhang
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, Nanjing, China
| | - Han Bai
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, Nanjing, China
| | - Junyuan Hu
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, Nanjing, China
| | - Kai Guo
- College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, China
| | - Lili Zhao
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, Nanjing, China.,State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, China
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45
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Thomas-Hargreaves LR, Liu YQ, Cui ZH, Pan S, Buchner MR. Bonding situations in tricoordinated beryllium phenyl complexes. J Comput Chem 2023; 44:397-405. [PMID: 35767185 DOI: 10.1002/jcc.26950] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Revised: 06/01/2022] [Accepted: 06/03/2022] [Indexed: 12/31/2022]
Abstract
The bonding situation in the tricoordinated beryllium phenyl complexes [BePh3 ]- , [(pyridine)BePh2 ] and [(trimethylsilyl-N-heterocyclic imine)BePh2 ] is investigated experimentally and computationally. Comparison of the NMR spectroscopic properties of these complexes and of their structural parameters, which were determined by single crystal X-ray diffraction experiments, indicates the presence of π-interactions. Topology analysis of the electron density reveals elliptical electron density distributions at the bond critical points and the double bond character of the beryllium-element bonds is verified by energy decomposition analysis with the combination of natural orbital for chemical valence. The present beryllium-element bonds are highly polarized and the ligands around the central atom have a strong influence on the degree of π-delocalization. These results are compared to related triarylboranes.
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Affiliation(s)
| | - Yu-Qian Liu
- Institute of Atomic and Molecular Physics, Key Laboratory of Physics and Technology for Advanced Batteries (Ministry of Education), Jilin University, Changchun
| | - Zhong-Hua Cui
- Institute of Atomic and Molecular Physics, Key Laboratory of Physics and Technology for Advanced Batteries (Ministry of Education), Jilin University, Changchun
| | - Sudip Pan
- Fachbereich Chemie, Philipps-Universität Marburg, Marburg, Germany.,Institute of Atomic and Molecular Physics, Key Laboratory of Physics and Technology for Advanced Batteries (Ministry of Education), Jilin University, Changchun
| | - Magnus R Buchner
- Fachbereich Chemie, Philipps-Universität Marburg, Marburg, Germany
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46
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Chen M, Zhang Z, Qiao Z, Zhao L, Mo Z. An Isolable Bis(Germylene)-Stabilized Plumbylone. Angew Chem Int Ed Engl 2023; 62:e202215146. [PMID: 36421062 DOI: 10.1002/anie.202215146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 11/22/2022] [Accepted: 11/23/2022] [Indexed: 11/25/2022]
Abstract
We report herein the synthesis of a stable plumbylone (3) by reduction of a bromodigermylplumbylene (2) with 2.2 equiv of potassium graphite (KC8 ). The molecular structure of 3 was established by a single-crystal X-ray diffraction study and features a two-coordinated Pb center with an acute Ge-Pb-Ge bond angle. Computational studies showed that this complex (3) possesses a singlet electronic ground state with a Pb0 center. Its high thermal stability can be most likely ascribed to the delocalization of π electrons over the Ge-Pb-Ge moiety. A preliminary reactivity study demonstrates that complex 3 can deliver Pb0 atoms to an organic azide producing a tetrameric imido complex [(PbNDipp)4 ] (Dipp=2,6-i Pr-C6 H3 , 4) and perform a metathesis reaction with GeCl2 ⋅dioxane to produce a bis(germylene)-stabilized germylone (5), highlighting the synthetic utility of 3.
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Affiliation(s)
- Ming Chen
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin, 300071, China
| | - Zhaoyin Zhang
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, Nanjing, 211816, China
| | - Zihao Qiao
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin, 300071, China
| | - Lili Zhao
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, Nanjing, 211816, China
| | - Zhenbo Mo
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin, 300071, China
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47
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Yang T, Li Z, Wang XB, Hou GL. Quantitative Descriptions of Dewar-Chatt-Duncanson Bonding Model: A Case Study of Zeise and Its Family Ions. Chemphyschem 2023; 24:e202200835. [PMID: 36622739 DOI: 10.1002/cphc.202200835] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 01/09/2023] [Accepted: 01/09/2023] [Indexed: 01/10/2023]
Abstract
Historically, Dewar-Chatt-Duncanson (DCD) model is a heuristic device to advance the development of organometallic chemistry and deepen our understanding of the metal-ligand bonding nature. Zeise's ion, the first man-made organometallic compound and a quintessential transition metal-olefin complex, was qualitatively explained using the DCD bonding scheme in 1950s. In this work, we quantified the explicit contributions of the σ donation and π back-donation to the metal-ligand bonding in Zeise and its family ions, [PtX3 L]- (X=F, Cl, Br, I, and At; L=C2 H4 , CO, and N2 ), using state-of-the-art quantum chemical calculations and energy decomposition analysis. The relative importance of the σ donation and π back-donation depends on both X and L, with [PtCl3 (C2 H4 )]- being a critical case in which the σ donation is marginally weaker than the π back-donation. The changes along this series are controlled by the energy levels of the correlated molecular orbitals of PtX3 - and ligand L. This study deepens our understanding of the bonding properties for transition metal complexes beyond the qualitative description of the DCD model.
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Affiliation(s)
- Tao Yang
- MOE Key Laboratory for Non-Equilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an, 710049, Shaanxi, China
| | - Zhaoyang Li
- MOE Key Laboratory for Non-Equilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an, 710049, Shaanxi, China
| | - Xue-Bin Wang
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, 99352, USA
| | - Gao-Lei Hou
- MOE Key Laboratory for Non-Equilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an, 710049, Shaanxi, China
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48
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Pan S, Frenking G. Comment on "The oxidation state in low-valent beryllium and magnesium compounds" by M. Gimferrer, S. Danés, E. Vos, C. B. Yildiz, I. Corral, A. Jana, P. Salvador and D. M. Andrada, Chem. Sci. 2022, 13, 6583. Chem Sci 2023; 14:379-383. [PMID: 36687352 PMCID: PMC9811506 DOI: 10.1039/d2sc04231b] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Accepted: 11/21/2022] [Indexed: 12/23/2022] Open
Abstract
We challenge the assignment of the oxidation state +2 for beryllium and magnesium in the complexes Be(cAACDip)2 and Mg(cAACDip)2 as suggested by Gimferrer et al., Chem. Sci. 2022, 13, 6583 in a recent study. A careful review of the data in the ESI contradicts their own statement and shows that the results support the earlier suggestion that the metals are in the zero oxidation state. The authors reported wrong data for the excitation energies of Be and Mg to the 1D (np2) state. We also correct some misleading statements about the EDA method.
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Affiliation(s)
- Sudip Pan
- Fachbereich Chemie, Philipps-Universität MarburgMarburgGermany
| | - Gernot Frenking
- Fachbereich Chemie, Philipps-Universität MarburgMarburgGermany,Donostia International Physics Center (DIPC)20018 San SebastianSpain,Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech UniversityChina
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Gimferrer M, Danés S, Vos E, Yildiz CB, Corral I, Jana A, Salvador P, Andrada DM. Reply to the 'Comment on "The oxidation state in low-valent beryllium and magnesium compounds"' by S. Pan and G. Frenking, Chem. Sci., 2022, 13, DOI: 10.1039/D2SC04231B. Chem Sci 2023; 14:384-392. [PMID: 36687341 PMCID: PMC9811512 DOI: 10.1039/d2sc05769g] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Accepted: 11/21/2022] [Indexed: 12/23/2022] Open
Abstract
A recent article by Pan and Frenking challenges our assignment of the oxidation state of low valent group 2 compounds. With this reply, we show that our assignment of Be(+2) and Mg(+2) oxidation states in Be(cAACDip)2 and Mg(cAACDip)2 is fully consistent with our data. Some of the arguments exposed by Pan and Frenking were based on visual inspection of our figures, rather than a thorough numerical analysis. We discuss with numerical proof that some of the statements made by the authors concerning our reported data are erroneous. In addition, we provide further evidence that the criterion of the lowest orbital interaction energy in the energy decomposition analysis (EDA) method is unsuitable as a general tool to assess the valence state of the fragments. Other indicators based on natural orbitals for chemical valence (NOCV) deliver a more reliable bonding picture. We also emphasize the importance of using stable wavefunctions for any kind of analysis, including EDA.
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Affiliation(s)
- Martí Gimferrer
- Departament de Química, Institut de Química Computacional i Catàlisi, Universitat de Gironac/M. Aurelia Capmany 6917003 GironaSpain
| | - Sergi Danés
- Departament de Química, Institut de Química Computacional i Catàlisi, Universitat de Gironac/M. Aurelia Capmany 6917003 GironaSpain,General and Inorganic Chemistry Department, University of SaarlandCampus C4.166123 SaarbrueckenGermany
| | - Eva Vos
- Departamento de Química, Universidad Autónoma de MadridC/Francisco Tomás y Valiente 728049 Cantoblanco MadridSpain
| | - Cem B. Yildiz
- Department of Medicinal and Aromatic Plants, Aksaray UniversityHacilar Harmani 268100 AksarayTurkey
| | - Inés Corral
- Departamento de Química, Universidad Autónoma de MadridC/Francisco Tomás y Valiente 728049 Cantoblanco MadridSpain
| | - Anukul Jana
- Tata Institute of Fundamental Research HyderabadGopanpally500046 HyderabadTelanganaIndia
| | - Pedro Salvador
- Departament de Química, Institut de Química Computacional i Catàlisi, Universitat de Gironac/M. Aurelia Capmany 6917003 GironaSpain
| | - Diego M. Andrada
- General and Inorganic Chemistry Department, University of SaarlandCampus C4.166123 SaarbrueckenGermany
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Freindorf M, McCutcheon M, Beiranvand N, Kraka E. Dihydrogen Bonding-Seen through the Eyes of Vibrational Spectroscopy. MOLECULES (BASEL, SWITZERLAND) 2022; 28:molecules28010263. [PMID: 36615456 PMCID: PMC9822382 DOI: 10.3390/molecules28010263] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Revised: 12/20/2022] [Accepted: 12/20/2022] [Indexed: 12/30/2022]
Abstract
In this work, we analyzed five groups of different dihydrogen bonding interactions and hydrogen clusters with an H3+ kernel utilizing the local vibrational mode theory, developed by our group, complemented with the Quantum Theory of Atoms-in-Molecules analysis to assess the strength and nature of the dihydrogen bonds in these systems. We could show that the intrinsic strength of the dihydrogen bonds investigated is primarily related to the protonic bond as opposed to the hydridic bond; thus, this should be the region of focus when designing dihydrogen bonded complexes with a particular strength. We could also show that the popular discussion of the blue/red shifts of dihydrogen bonding based on the normal mode frequencies is hampered from mode-mode coupling and that a blue/red shift discussion based on local mode frequencies is more meaningful. Based on the bond analysis of the H3+(H2)n systems, we conclude that the bond strength in these crystal-like structures makes them interesting for potential hydrogen storage applications.
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