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de Sousa DV, Maia PVS, Eltink E, de Moura Guimarães L. Biomolecules in Pleistocene fossils from tropical cave indicate fossil biofilm. Sci Rep 2024; 14:21071. [PMID: 39256439 PMCID: PMC11387772 DOI: 10.1038/s41598-024-71313-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Accepted: 08/27/2024] [Indexed: 09/12/2024] Open
Abstract
Finding biomolecules in fossils is a challenging task due to their degradation over time from physical, chemical, and biological factors. The primary hypothesis for explaining the presence of biomolecules in fossilized bones tissues suggests their survival in the fossilization process. In contrast, some of these biomolecules could either derive from bacteria biofilm, thus without a direct relationship with the fossil record or could be an artifact from measurement procedures. Raman spectroscopy studies across various fossil ages and environments have detected multiple bands ranging from 1200 to 1800 cm-1 associative of organic compounds. However, the significance of these bands remains elusive. Our research aims to address this issue through a deep Raman spectroscopy investigation on Pleistocene teeth from Tayassu and Smilodon populator. These fossils were obtained from a well-preserved stratigraphic succession in Toca de Cima do Pilão cave, near the National Park of Serra da Capivara in semiarid Brazil. We propose two hypotheses to explain the presence of organic compounds related to 1200 to 1800 cm-1 Raman spectral range in fossil tissues: (i) these bands are biological signatures of preserved fossil biomolecules, or (ii) they are exogenous biological signatures associated with the bacterial biofilm formation during post-depositional processes. Our results align with the latter hypothesis, followed by biofilm degradation. However, the specific mechanisms involved in the natural biofilm degradation in fossil records remain unexplored in this study. In our case, the formation of biofilm on fossil bones is attributed to the oligotrophic conditions of the cave sediment matrix. We present a comprehensive model to elucidate the existence of biofilm on fossilized tissues, emphasizing the pivotal role of post-depositional processes, especially water action, in the cave environment. As the fossils were discovered in a cave setting, post-depositional processes significantly contribute to the formation of the biofilm matrix. Although our study provides insights into biofilm formation, further research is needed to delve into the specific mechanisms driving natural biofilm degradation in fossils.
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Affiliation(s)
- Daniel Vieira de Sousa
- Colegiado de Geografia, Universidade Federal do Vale do São Francisco, Senhor do Bonfim, Petrolina, 48970-000, Brazil.
| | | | - Estevan Eltink
- Colegiado de Ecologia, Universidade Federal do Vale do São Francisco, Senhor do Bonfim, Petrolina, 48970-000, Brazil
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Han F, Yu Y, Zhang S, Zeng R, Wang X, Cai H, Wu T, Wen Y, Cai S, Li C, Wu R, Zhao Q, Xu X. Exceptional Early Jurassic fossils with leathery eggs shed light on dinosaur reproductive biology. Natl Sci Rev 2024; 11:nwad258. [PMID: 38707200 PMCID: PMC11067957 DOI: 10.1093/nsr/nwad258] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Revised: 09/25/2023] [Accepted: 09/27/2023] [Indexed: 05/07/2024] Open
Abstract
Our understanding of pre-Cretaceous dinosaur reproduction is hindered by a scarcity of evidence within fossil records. Here we report three adult skeletons and five clutches of embryo-containing eggs of a new sauropodomorph from the Lower Jurassic of southwestern China, displaying several significant reproductive features that are either unknown or unlike other early-diverging sauropodomorphs, such as relatively large eggs with a relatively thick calcareous shell formed by prominent mammillary cones, synchronous hatching and a transitional prehatching posture between the crocodilians and living birds. Most significantly, these Early Jurassic fossils provide strong evidence for the earliest known leathery eggs. Our comprehensive quantitative analyses demonstrate that the first dinosaur eggs were probably leathery, elliptical and relatively small, but with relatively long eggshell units, and that along the line to living birds, the most significant change in reptilian egg morphology occurred early in theropod evolution rather than near the origin of Aves.
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Affiliation(s)
- Fenglu Han
- School of Earth Sciences, China University of Geosciences (Wuhan), Wuhan 430074, China
| | - Yilun Yu
- Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China
- University of Chinese Academy of Sciences, Beijing 101408, China
| | - Shukang Zhang
- Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China
| | - Rong Zeng
- Guizhou Provincial Museum, Guiyang 550081, China
| | - Xinjin Wang
- Guizhou Provincial Institute of Cultural Relics and Archaeology, Guiyang 550001, China
| | - Huiyang Cai
- Guizhou Provincial Museum, Guiyang 550081, China
| | | | - Yingfeng Wen
- Pingba Institute of Cultural Relics Administration, Anshun 550820, China
| | - Sifu Cai
- Guizhou Provincial Museum, Guiyang 550081, China
| | - Chun Li
- Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China
| | - Rui Wu
- School of Earth Sciences, China University of Geosciences (Wuhan), Wuhan 430074, China
| | - Qi Zhao
- Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China
| | - Xing Xu
- Centre for Vertebrate Evolutionary Biology, Yunnan University, Kunming 650091, China
- Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China
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Norell MA, Wiemann J, Menéndez I, Fabbri M, Yu C, Marsicano CA, Moore-Nall A, Varricchio DJ, Pol D, Zelenitsky DK. Reply to: Triassic sauropodomorph eggshell might not be soft. Nature 2022; 610:E11-E14. [PMID: 36261552 DOI: 10.1038/s41586-022-05152-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Mark A Norell
- Division of Paleontology, American Museum of Natural History, New York, NY, USA
| | - Jasmina Wiemann
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA. .,Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA.
| | - Iris Menéndez
- Departamento de Geodinámica, Estratigrafía y Paleontología, Facultad de Ciencias Geológicas, Universidad Complutense de Madrid, Madrid, Spain. .,Departamento de Cambio Medioambiental, Instituto de Geociencias (UCM, CSIC), Madrid, Spain.
| | - Matteo Fabbri
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA. .,Negaunee Integrative Research Centre, Field Museum of Natural History, Chicago, IL, USA.
| | - Congyu Yu
- Division of Paleontology, American Museum of Natural History, New York, NY, USA
| | - Claudia A Marsicano
- Departamento de Ciencias Geológicas, Universidad de Buenos Aires, Buenos Aires, Argentina
| | | | | | - Diego Pol
- CONICET, Museo Paleontológico Egidio Feruglio, Trelew, Argentina
| | - Darla K Zelenitsky
- Department of Geoscience, University of Calgary, Calgary, Alberta, Canada
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