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Panniello M, Gillon CJ, Maffulli R, Celotto M, Richards BA, Panzeri S, Kohl MM. Stimulus information guides the emergence of behavior-related signals in primary somatosensory cortex during learning. Cell Rep 2024; 43:114244. [PMID: 38796851 DOI: 10.1016/j.celrep.2024.114244] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Revised: 01/16/2024] [Accepted: 05/02/2024] [Indexed: 05/29/2024] Open
Abstract
Neurons in the primary cortex carry sensory- and behavior-related information, but it remains an open question how this information emerges and intersects together during learning. Current evidence points to two possible learning-related changes: sensory information increases in the primary cortex or sensory information remains stable, but its readout efficiency in association cortices increases. We investigated this question by imaging neuronal activity in mouse primary somatosensory cortex before, during, and after learning of an object localization task. We quantified sensory- and behavior-related information and estimated how much sensory information was used to instruct perceptual choices as learning progressed. We find that sensory information increases from the start of training, while choice information is mostly present in the later stages of learning. Additionally, the readout of sensory information becomes more efficient with learning as early as in the primary sensory cortex. Together, our results highlight the importance of primary cortical neurons in perceptual learning.
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Affiliation(s)
- Mariangela Panniello
- Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford OX1 3PT, UK; School of Psychology and Neuroscience, University of Glasgow, Glasgow G12 8QQ, UK; Optical Approaches to Brain Function Laboratory, Istituto Italiano di Tecnologia, 16163 Genova, Italy
| | - Colleen J Gillon
- Department of Biological Sciences, University of Toronto Scarborough, Toronto, ON M1C 1A4, Canada; Department of Cell & Systems Biology, University of Toronto, Toronto, ON M5S 3G5, Canada; Mila, Montréal, QC H2S 3H1, Canada
| | - Roberto Maffulli
- Neural Computation Laboratory, Center for Human Technologies, Istituto Italiano di Tecnologia, 16163 Genova, Italy
| | - Marco Celotto
- Neural Computation Laboratory, Center for Human Technologies, Istituto Italiano di Tecnologia, 16163 Genova, Italy; Institute of Neural Information Processing, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf (UKE), 20251 Hamburg, Germany; Department of Pharmacy and Biotechnology, University of Bologna, 40126 Bologna, Italy
| | - Blake A Richards
- Mila, Montréal, QC H2S 3H1, Canada; School of Computer Science, McGill University, Montréal, QC H3A 2A7, Canada; Department of Neurology & Neurosurgery, McGill University, Montréal, QC H3A 1A1, Canada; Learning in Machines and Brains Program, Canadian Institute for Advanced Research, Toronto, ON M5G 1M1, Canada; Montreal Neurological Institute, Montréal, QC H3A 2B4, Canada
| | - Stefano Panzeri
- Neural Computation Laboratory, Center for Human Technologies, Istituto Italiano di Tecnologia, 16163 Genova, Italy; Institute of Neural Information Processing, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf (UKE), 20251 Hamburg, Germany
| | - Michael M Kohl
- Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford OX1 3PT, UK; School of Psychology and Neuroscience, University of Glasgow, Glasgow G12 8QQ, UK.
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Nebuloni F, Do QB, Cook PR, Walsh EJ, Wade-Martins R. A fluid-walled microfluidic platform for human neuron microcircuits and directed axotomy. LAB ON A CHIP 2024; 24:3252-3264. [PMID: 38841815 PMCID: PMC11198392 DOI: 10.1039/d4lc00107a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Accepted: 05/27/2024] [Indexed: 06/07/2024]
Abstract
In our brains, different neurons make appropriate connections; however, there remain few in vitro models of such circuits. We use an open microfluidic approach to build and study neuronal circuits in vitro in ways that fit easily into existing bio-medical workflows. Dumbbell-shaped circuits are built in minutes in standard Petri dishes; the aqueous phase is confined by fluid walls - interfaces between cell-growth medium and an immiscible fluorocarbon, FC40. Conditions are established that ensure post-mitotic neurons derived from human induced pluripotent stem cells (iPSCs) plated in one chamber of a dumbbell remain where deposited. After seeding cortical neurons on one side, axons grow through the connecting conduit to ramify amongst striatal neurons on the other - an arrangement mimicking unidirectional cortico-striatal connectivity. We also develop a moderate-throughput non-contact axotomy assay. Cortical axons in conduits are severed by a media jet; then, brain-derived neurotrophic factor and striatal neurons in distal chambers promote axon regeneration. As additional conduits and chambers are easily added, this opens up the possibility of mimicking complex neuronal networks, and screening drugs for their effects on connectivity.
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Affiliation(s)
- Federico Nebuloni
- Osney Thermofluids Institute, Department of Engineering Science, University of Oxford, Osney Mead, Oxford OX2 0ES, UK.
- The Sir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford OX1 3RE, UK
| | - Quyen B Do
- Oxford Parkinson's Disease Centre and Department of Physiology, Anatomy and Genetics, University of Oxford, South Park Road, Oxford OX1 3QU, UK.
- Kavli Institute for Neuroscience Discovery, University of Oxford, Dorothy Crowfoot Hodgkin Building, South Park Road, Oxford OX1 3QU, UK
- Aligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD, 20815, USA
| | - Peter R Cook
- The Sir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford OX1 3RE, UK
| | - Edmond J Walsh
- Osney Thermofluids Institute, Department of Engineering Science, University of Oxford, Osney Mead, Oxford OX2 0ES, UK.
| | - Richard Wade-Martins
- Oxford Parkinson's Disease Centre and Department of Physiology, Anatomy and Genetics, University of Oxford, South Park Road, Oxford OX1 3QU, UK.
- Kavli Institute for Neuroscience Discovery, University of Oxford, Dorothy Crowfoot Hodgkin Building, South Park Road, Oxford OX1 3QU, UK
- Aligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD, 20815, USA
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3
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Gardères PM, Le Gal S, Rousseau C, Mamane A, Ganea DA, Haiss F. Coexistence of state, choice, and sensory integration coding in barrel cortex LII/III. Nat Commun 2024; 15:4782. [PMID: 38839747 PMCID: PMC11153558 DOI: 10.1038/s41467-024-49129-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2023] [Accepted: 05/23/2024] [Indexed: 06/07/2024] Open
Abstract
During perceptually guided decisions, correlates of choice are found as upstream as in the primary sensory areas. However, how well these choice signals align with early sensory representations, a prerequisite for their interpretation as feedforward substrates of perception, remains an open question. We designed a two alternative forced choice task (2AFC) in which male mice compared stimulation frequencies applied to two adjacent vibrissae. The optogenetic silencing of individual columns in the primary somatosensory cortex (wS1) resulted in predicted shifts of psychometric functions, demonstrating that perception depends on focal, early sensory representations. Functional imaging of layer II/III single neurons revealed mixed coding of stimuli, choices and engagement in the task. Neurons with multi-whisker suppression display improved sensory discrimination and had their activity increased during engagement in the task, enhancing selectively representation of the signals relevant to solving the task. From trial to trial, representation of stimuli and choice varied substantially, but mostly orthogonally to each other, suggesting that perceptual variability does not originate from wS1 fluctuations but rather from downstream areas. Together, our results highlight the role of primary sensory areas in forming a reliable sensory substrate that could be used for flexible downstream decision processes.
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Affiliation(s)
- Pierre-Marie Gardères
- Institut Pasteur, Université Paris Cité, Unit of Neural Circuits Dynamics and Decision Making, F-75015, Paris, France.
- IZKF Aachen, Medical School, RWTH Aachen University, 52074, Aachen, Germany.
| | - Sébastien Le Gal
- Institut Pasteur, Université Paris Cité, Unit of Neural Circuits Dynamics and Decision Making, F-75015, Paris, France
| | - Charly Rousseau
- Institut Pasteur, Université Paris Cité, Unit of Neural Circuits Dynamics and Decision Making, F-75015, Paris, France
| | - Alexandre Mamane
- Institut Pasteur, Université Paris Cité, Unit of Neural Circuits Dynamics and Decision Making, F-75015, Paris, France
| | - Dan Alin Ganea
- IZKF Aachen, Medical School, RWTH Aachen University, 52074, Aachen, Germany
- University of Basel, Department of Biomedicine, 4001, Basel, Switzerland
| | - Florent Haiss
- Institut Pasteur, Université Paris Cité, Unit of Neural Circuits Dynamics and Decision Making, F-75015, Paris, France.
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Yoshinaga Y, Sato N. Reach-to-Grasp and tactile discrimination task: A new task for the study of sensory-motor learning. Behav Brain Res 2024; 466:115007. [PMID: 38648867 DOI: 10.1016/j.bbr.2024.115007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Revised: 04/04/2024] [Accepted: 04/19/2024] [Indexed: 04/25/2024]
Abstract
Although active touch in rodents arises from the forepaws as well as whiskers, most research on active touch only focuses on whiskers. This results in a paucity of tasks designed to assess the process of active touch with a forepaw. We develop a new experimental task, the Reach-to-Grasp and Tactile Discrimination task (RGTD task), to examine active touch with a forepaw in rodents, particularly changes in processes of active touch during motor skill learning. In the RGTD task, animals are required to (1) extend their forelimb to an object, (2) grasp the object, and (3) manipulate the grasped object with the forelimb. The animals must determine the direction of the manipulation based on active touch sensations arising during the period of the grasping. In experiment 1 of the present study, we showed that rats can learn the RGTD task. In experiment 2, we confirmed that the rats are capable of reversal learning of the RGTD task. The RGTD task shared most of the reaching movements involved with conventional forelimb reaching tasks. From the standpoint of a discrimination task, the RGTD task enables rigorous experimental control, for example by removing bias in the stimulus-response correspondence, and makes it possible to utilize diverse experimental procedures that have been difficult in prior tasks.
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Affiliation(s)
- Yudai Yoshinaga
- Department of Psychological Sciences, Kwansei Gakuin University, 1-1-155, Uegahara, Nishinomiya, Hyogo 662-8501, Japan; Research Fellow of Japan Society for the Promotion of Science, Japan
| | - Nobuya Sato
- Department of Psychological Sciences, Kwansei Gakuin University, 1-1-155, Uegahara, Nishinomiya, Hyogo 662-8501, Japan; Center for Applied Psychological Science (CAPS), Kwansei Gakuin University, 1-1-155, Uegahara, Nishinomiya, Hyogo, Japan.
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5
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Steinfeld R, Tacão-Monteiro A, Renart A. Differential representation of sensory information and behavioral choice across layers of the mouse auditory cortex. Curr Biol 2024; 34:2200-2211.e6. [PMID: 38733991 DOI: 10.1016/j.cub.2024.04.040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2023] [Revised: 03/22/2024] [Accepted: 04/18/2024] [Indexed: 05/13/2024]
Abstract
The activity of neurons in sensory areas sometimes covaries with upcoming choices in decision-making tasks. However, the prevalence, causal origin, and functional role of choice-related activity remain controversial. Understanding the circuit-logic of decision signals in sensory areas will require understanding their laminar specificity, but simultaneous recordings of neural activity across the cortical layers in forced-choice discrimination tasks have not yet been performed. Here, we describe neural activity from such recordings in the auditory cortex of mice during a frequency discrimination task with delayed report, which, as we show, requires the auditory cortex. Stimulus-related information was widely distributed across layers but disappeared very quickly after stimulus offset. Choice selectivity emerged toward the end of the delay period-suggesting a top-down origin-but only in the deep layers. Early stimulus-selective and late choice-selective deep neural ensembles were correlated, suggesting that the choice-selective signal fed back to the auditory cortex is not just action specific but develops as a consequence of the sensory-motor contingency imposed by the task.
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Affiliation(s)
- Raphael Steinfeld
- Champalimaud Research, Champalimaud Foundation, Avenida Brasília, 1400-038 Lisbon, Portugal.
| | - André Tacão-Monteiro
- Champalimaud Research, Champalimaud Foundation, Avenida Brasília, 1400-038 Lisbon, Portugal
| | - Alfonso Renart
- Champalimaud Research, Champalimaud Foundation, Avenida Brasília, 1400-038 Lisbon, Portugal.
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6
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Gauld OM, Packer AM, Russell LE, Dalgleish HWP, Iuga M, Sacadura F, Roth A, Clark BA, Häusser M. A latent pool of neurons silenced by sensory-evoked inhibition can be recruited to enhance perception. Neuron 2024:S0896-6273(24)00276-9. [PMID: 38729150 DOI: 10.1016/j.neuron.2024.04.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 02/12/2024] [Accepted: 04/12/2024] [Indexed: 05/12/2024]
Abstract
To investigate which activity patterns in sensory cortex are relevant for perceptual decision-making, we combined two-photon calcium imaging and targeted two-photon optogenetics to interrogate barrel cortex activity during perceptual discrimination. We trained mice to discriminate bilateral whisker deflections and report decisions by licking left or right. Two-photon calcium imaging revealed sparse coding of contralateral and ipsilateral whisker input in layer 2/3, with most neurons remaining silent during the task. Activating pyramidal neurons using two-photon holographic photostimulation evoked a perceptual bias that scaled with the number of neurons photostimulated. This effect was dominated by optogenetic activation of non-coding neurons, which did not show sensory or motor-related activity during task performance. Photostimulation also revealed potent recruitment of cortical inhibition during sensory processing, which strongly and preferentially suppressed non-coding neurons. Our results suggest that a pool of non-coding neurons, selectively suppressed by network inhibition during sensory processing, can be recruited to enhance perception.
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Affiliation(s)
- Oliver M Gauld
- Wolfson Institute for Biomedical Research, University College London, London WC1E 6BT, UK; Sainsbury Wellcome Centre, University College London, London W1T 4JG, UK.
| | - Adam M Packer
- Wolfson Institute for Biomedical Research, University College London, London WC1E 6BT, UK; Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford OX1 3PT, UK
| | - Lloyd E Russell
- Wolfson Institute for Biomedical Research, University College London, London WC1E 6BT, UK
| | - Henry W P Dalgleish
- Wolfson Institute for Biomedical Research, University College London, London WC1E 6BT, UK
| | - Maya Iuga
- Wolfson Institute for Biomedical Research, University College London, London WC1E 6BT, UK
| | - Francisco Sacadura
- Wolfson Institute for Biomedical Research, University College London, London WC1E 6BT, UK
| | - Arnd Roth
- Wolfson Institute for Biomedical Research, University College London, London WC1E 6BT, UK
| | - Beverley A Clark
- Wolfson Institute for Biomedical Research, University College London, London WC1E 6BT, UK
| | - Michael Häusser
- Wolfson Institute for Biomedical Research, University College London, London WC1E 6BT, UK.
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7
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Kogan JF, Fontanini A. Learning enhances representations of taste-guided decisions in the mouse gustatory insular cortex. Curr Biol 2024; 34:1880-1892.e5. [PMID: 38631343 PMCID: PMC11188718 DOI: 10.1016/j.cub.2024.03.034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 02/07/2024] [Accepted: 03/19/2024] [Indexed: 04/19/2024]
Abstract
Learning to discriminate overlapping gustatory stimuli that predict distinct outcomes-a feat known as discrimination learning-can mean the difference between ingesting a poison or a nutritive meal. Despite the obvious importance of this process, very little is known about the neural basis of taste discrimination learning. In other sensory modalities, this form of learning can be mediated by either the sharpening of sensory representations or the enhanced ability of "decision-making" circuits to interpret sensory information. Given the dual role of the gustatory insular cortex (GC) in encoding both sensory and decision-related variables, this region represents an ideal site for investigating how neural activity changes as animals learn a novel taste discrimination. Here, we present results from experiments relying on two-photon calcium imaging of GC neural activity in mice performing a taste-guided mixture discrimination task. The task allows for the recording of neural activity before and after learning induced by training mice to discriminate increasingly similar pairs of taste mixtures. Single-neuron and population analyses show a time-varying pattern of activity, with early sensory responses emerging after taste delivery and binary, choice-encoding responses emerging later in the delay before a decision is made. Our results demonstrate that, while both sensory and decision-related information is encoded by GC in the context of a taste mixture discrimination task, learning and improved performance are associated with a specific enhancement of decision-related responses.
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Affiliation(s)
- Joshua F Kogan
- Graduate Program in Neuroscience, Stony Brook University, Stony Brook, NY 11794, USA; Medical Scientist Training Program, Stony Brook University, Stony Brook, NY 11794, USA; Department of Neurobiology and Behavior, Stony Brook University, Stony Brook, NY 11794, USA.
| | - Alfredo Fontanini
- Graduate Program in Neuroscience, Stony Brook University, Stony Brook, NY 11794, USA; Medical Scientist Training Program, Stony Brook University, Stony Brook, NY 11794, USA; Department of Neurobiology and Behavior, Stony Brook University, Stony Brook, NY 11794, USA.
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8
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Wei HR, Tang L, Yang XL, Chen CM, Li LX, Mao Y, Wang D, Kang F, Qun S, Zhang Z, Cao P, Jin Y. A microglial activation cascade across cortical regions underlies secondary mechanical hypersensitivity to amputation. Cell Rep 2024; 43:113804. [PMID: 38368612 DOI: 10.1016/j.celrep.2024.113804] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Revised: 08/03/2023] [Accepted: 01/31/2024] [Indexed: 02/20/2024] Open
Abstract
Neural mechanisms underlying amputation-related secondary pain are unclear. Using in vivo two-photon imaging, three-dimensional reconstruction, and fiber photometry recording, we show that a microglial activation cascade from the primary somatosensory cortex of forelimb (S1FL) to the primary somatosensory cortex of hindlimb (S1HL) mediates the disinhibition and subsequent hyperexcitation of glutamatergic neurons in the S1HL (S1HLGlu), which then drives secondary mechanical hypersensitivity development in ipsilateral hindpaws of mice with forepaw amputation. Forepaw amputation induces rapid S1FL microglial activation that further activates S1HL microglia via the CCL2-CCR2 signaling pathway. Increased engulfment of GABAergic presynapses by activated microglia stimulates S1HLGlu neuronal activity, ultimately leading to secondary mechanical hypersensitivity of hindpaws. It is widely believed direct neuronal projection drives interactions between distinct brain regions to prime specific behaviors. Our study reveals microglial interactions spanning different subregions of the somatosensory cortex to drive a maladaptive neuronal response underlying secondary mechanical hypersensitivity at non-injured sites.
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Affiliation(s)
- Hong-Rui Wei
- Department of Anesthesiology, The First Affiliated Hospital of USTC, Hefei National Laboratory for Physical Sciences at the Microscale, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230026, China
| | - Lan Tang
- Department of Anesthesiology, The First Affiliated Hospital of USTC, Hefei National Laboratory for Physical Sciences at the Microscale, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230026, China
| | - Xin-Lu Yang
- Department of Anesthesiology, The First Affiliated Hospital of USTC, Hefei National Laboratory for Physical Sciences at the Microscale, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230026, China; Department of Anesthesiology, The First Affiliated Hospital of Wannan Medical College, Wuhu, Anhui 241000, China
| | - Chang-Mao Chen
- Department of Anesthesiology, The First Affiliated Hospital of USTC, Hefei National Laboratory for Physical Sciences at the Microscale, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230026, China
| | - Le-Xian Li
- Department of Anesthesiology, The First Affiliated Hospital of USTC, Hefei National Laboratory for Physical Sciences at the Microscale, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230026, China
| | - Yu Mao
- Department of Anesthesiology, The First Affiliated Hospital of Anhui Medical University, Hefei 230022, China
| | - Di Wang
- Department of Anesthesiology, The First Affiliated Hospital of USTC, Hefei National Laboratory for Physical Sciences at the Microscale, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230026, China
| | - Fang Kang
- Department of Anesthesiology, The First Affiliated Hospital of USTC, Hefei National Laboratory for Physical Sciences at the Microscale, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230026, China
| | - Sen Qun
- Stroke Center and Department of Neurology, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230026, China
| | - Zhi Zhang
- Department of Anesthesiology, The First Affiliated Hospital of USTC, Hefei National Laboratory for Physical Sciences at the Microscale, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230026, China; Center for Advanced Interdisciplinary Science and Biomedicine, Institute of Health and Medicine, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230026, China.
| | - Peng Cao
- Stroke Center and Department of Neurology, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230026, China.
| | - Yan Jin
- Stroke Center and Department of Neurology, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230026, China.
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Zhou W, Schneider DM. Learning within a sensory-motor circuit links action to expected outcome. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.02.08.579532. [PMID: 38370770 PMCID: PMC10871315 DOI: 10.1101/2024.02.08.579532] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/20/2024]
Abstract
The cortex integrates sound- and movement-related signals to predict the acoustic consequences of behavior and detect violations from expectations. Although expectation- and prediction-related activity has been observed in the auditory cortex of humans, monkeys, and mice during vocal and non-vocal acoustic behaviors, the specific cortical circuitry required for forming memories, recalling expectations, and making predictions remains unknown. By combining closed-loop behavior, electrophysiological recordings, longitudinal pharmacology, and targeted optogenetic circuit activation, we identify a cortical locus for the emergence of expectation and error signals. Movement-related expectation signals and sound-related error signals emerge in parallel in the auditory cortex and are concentrated in largely distinct neurons, consistent with a compartmentalization of different prediction-related computations. On a trial-by-trial basis, expectation and error signals are correlated in auditory cortex, consistent with a local circuit implementation of an internal model. Silencing the auditory cortex during motor-sensory learning prevents the emergence of expectation signals and error signals, revealing the auditory cortex as a necessary node for learning to make predictions. Prediction-like signals can be experimentally induced in the auditory cortex, even in the absence of behavioral experience, by pairing optogenetic motor cortical activation with sound playback, indicating that cortical circuits are sufficient for movement-like predictive processing. Finally, motor-sensory experience realigns the manifold dimensions in which auditory cortical populations encode movement and sound, consistent with predictive processing. These findings show that prediction-related signals reshape auditory cortex dynamics during behavior and reveal a cortical locus for the emergence of expectation and error.
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Affiliation(s)
- WenXi Zhou
- Center for Neural Science, New York University, New York, NY, 10012
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10
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Han S, Helmchen F. Behavior-relevant top-down cross-modal predictions in mouse neocortex. Nat Neurosci 2024; 27:298-308. [PMID: 38177341 DOI: 10.1038/s41593-023-01534-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Accepted: 11/27/2023] [Indexed: 01/06/2024]
Abstract
Animals adapt to a constantly changing world by predicting their environment and the consequences of their actions. The predictive coding hypothesis proposes that the brain generates predictions and continuously compares them with sensory inputs to guide behavior. However, how the brain reconciles conflicting top-down predictions and bottom-up sensory information remains unclear. To address this question, we simultaneously imaged neuronal populations in the mouse somatosensory barrel cortex and posterior parietal cortex during an auditory-cued texture discrimination task. In mice that had learned the task with fixed tone-texture matching, the presentation of mismatched pairing induced conflicts between tone-based texture predictions and actual texture inputs. When decisions were based on the predicted rather than the actual texture, top-down information flow was dominant and texture representations in both areas were modified, whereas dominant bottom-up information flow led to correct representations and behavioral choice. Our findings provide evidence for hierarchical predictive coding in the mouse neocortex.
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Affiliation(s)
- Shuting Han
- Brain Research Institute, University of Zurich, Zurich, Switzerland.
| | - Fritjof Helmchen
- Brain Research Institute, University of Zurich, Zurich, Switzerland.
- Neuroscience Center Zurich (ZNZ), University of Zurich, Zurich, Switzerland.
- University Research Priority Program (URPP), Adaptive Brain Circuits in Development and Learning, University of Zurich, Zurich, Switzerland.
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11
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Lee DH, Kim JS, Ryun S, Chung CK. Discrete tactile feature comparison subprocess in human brain during a decision-making process. Cortex 2024; 171:383-396. [PMID: 38101274 DOI: 10.1016/j.cortex.2023.11.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Revised: 10/03/2023] [Accepted: 11/02/2023] [Indexed: 12/17/2023]
Abstract
From sensory input to motor action, encoded sensory features flow sequentially along cortical networks for decision-making. Despite numerous studies probing the decision-making process, the subprocess that compares encoded sensory features before making a decision has not been fully elucidated in humans. In this study, we investigated sensory feature comparison by presenting two different tasks (a discrimination task, in which participants made decisions by comparing two sequential tactile stimuli; and a detection task, in which participants responded to the second tactile stimulus in two sequential stimuli) to epilepsy patients while recording electrocorticography (ECoG). By comparing tactile-specific gamma band (30-200 Hz) power between the two tasks, the decision-making process was divided into three subprocesses-categorization, comparison, and decision-consistent with a previous study (Heekeren et al., 2004). These subprocesses occurred sequentially in the dorsolateral prefrontal cortex, premotor cortex, secondary somatosensory cortex, and parietal lobe. Gamma power showed two different patterns of correlation with response time. In the inferior parietal lobule (IPL), there was a negative correlation. This means that as gamma power increased, response time decreased. In the secondary somatosensory cortex (S2), there was a positive correlation. Here, as gamma power increased, response time also increased. These results indicate that the IPL and S2 encode tactile feature comparison differently. Our connectivity analysis showed that the S2 transmitted tactile information to the IPL. Our findings suggest that multiple areas in the parietal lobe encode sensory feature comparison differently before making a decision.
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Affiliation(s)
- Dong Hyeok Lee
- Department of Brain and Cognitive Sciences, College of Natural Sciences, Seoul National University, Seoul, Republic of Korea
| | - June Sic Kim
- The Research Institute of Basic Sciences, College of Natural Sciences, Seoul National University, Seoul, Republic of Korea
| | - Seokyun Ryun
- Neuroscience Research Institute, Medical Research Center, College of Medicine, Seoul National University, Seoul, Republic of Korea
| | - Chun Kee Chung
- Department of Brain and Cognitive Sciences, College of Natural Sciences, Seoul National University, Seoul, Republic of Korea; Neuroscience Research Institute, Medical Research Center, College of Medicine, Seoul National University, Seoul, Republic of Korea; Department of Neurosurgery, Seoul National University Hospital, Seoul, Republic of Korea.
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12
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Oryshchuk A, Sourmpis C, Weverbergh J, Asri R, Esmaeili V, Modirshanechi A, Gerstner W, Petersen CCH, Crochet S. Distributed and specific encoding of sensory, motor, and decision information in the mouse neocortex during goal-directed behavior. Cell Rep 2024; 43:113618. [PMID: 38150365 DOI: 10.1016/j.celrep.2023.113618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Revised: 10/27/2023] [Accepted: 12/08/2023] [Indexed: 12/29/2023] Open
Abstract
Goal-directed behaviors involve coordinated activity in many cortical areas, but whether the encoding of task variables is distributed across areas or is more specifically represented in distinct areas remains unclear. Here, we compared representations of sensory, motor, and decision information in the whisker primary somatosensory cortex, medial prefrontal cortex, and tongue-jaw primary motor cortex in mice trained to lick in response to a whisker stimulus with mice that were not taught this association. Irrespective of learning, properties of the sensory stimulus were best encoded in the sensory cortex, whereas fine movement kinematics were best represented in the motor cortex. However, movement initiation and the decision to lick in response to the whisker stimulus were represented in all three areas, with decision neurons in the medial prefrontal cortex being more selective, showing minimal sensory responses in miss trials and motor responses during spontaneous licks. Our results reconcile previous studies indicating highly specific vs. highly distributed sensorimotor processing.
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Affiliation(s)
- Anastasiia Oryshchuk
- Laboratory of Sensory Processing, Brain Mind Institute, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Christos Sourmpis
- Laboratory of Sensory Processing, Brain Mind Institute, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland; School of Life Sciences and School of Computer and Communication Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Julie Weverbergh
- Laboratory of Sensory Processing, Brain Mind Institute, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Reza Asri
- Laboratory of Sensory Processing, Brain Mind Institute, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Vahid Esmaeili
- Laboratory of Sensory Processing, Brain Mind Institute, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Alireza Modirshanechi
- School of Life Sciences and School of Computer and Communication Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Wulfram Gerstner
- School of Life Sciences and School of Computer and Communication Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Carl C H Petersen
- Laboratory of Sensory Processing, Brain Mind Institute, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland.
| | - Sylvain Crochet
- Laboratory of Sensory Processing, Brain Mind Institute, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland; Institut National de la Santé et de la Recherche Médicale (INSERM), 6900 Lyon, France.
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13
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Do J, Jung MW, Lee D. Automating licking bias correction in a two-choice delayed match-to-sample task to accelerate learning. Sci Rep 2023; 13:22768. [PMID: 38123637 PMCID: PMC10733387 DOI: 10.1038/s41598-023-49862-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Accepted: 12/12/2023] [Indexed: 12/23/2023] Open
Abstract
Animals often display choice bias, or a preference for one option over the others, which can significantly impede learning new tasks. Delayed match-to-sample (DMS) tasks with two-alternative choices of lickports on the left and right have been widely used to study sensory processing, working memory, and associative memory in head-fixed animals. However, extensive training time, primarily due to the animals' biased licking responses, limits their practical utility. Here, we present the implementation of an automated side bias correction system in an olfactory DMS task, where the lickport positions and the ratio of left- and right-rewarded trials are dynamically adjusted to counterbalance mouse's biased licking responses during training. The correction algorithm moves the preferred lickport farther away from the mouse's mouth and the non-preferred lickport closer, while also increasing the proportion of non-preferred side trials when biased licking occurs. We found that adjusting lickport distances and the proportions of left- versus right-rewarded trials effectively reduces the mouse's side bias. Further analyses reveal that these adjustments also correlate with subsequent improvements in behavioral performance. Our findings suggest that the automated side bias correction system is a valuable tool for enhancing the applicability of behavioral tasks involving two-alternative lickport choices.
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Affiliation(s)
- Jongrok Do
- Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea
- Center for Cognition and Sociality, Institute for Basic Science, Daejeon, 34126, Republic of Korea
| | - Min Whan Jung
- Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.
- Center for Synaptic Brain Dysfunctions, Institute for Basic Science, Daejeon, 34141, Republic of Korea.
| | - Doyun Lee
- Center for Cognition and Sociality, Institute for Basic Science, Daejeon, 34126, Republic of Korea.
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14
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Kogan JF, Fontanini A. Learning enhances representations of taste-guided decisions in the mouse gustatory insular cortex. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.10.16.562605. [PMID: 37905010 PMCID: PMC10614904 DOI: 10.1101/2023.10.16.562605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/02/2023]
Abstract
Learning to discriminate overlapping gustatory stimuli that predict distinct outcomes - a feat known as discrimination learning - can mean the difference between ingesting a poison or a nutritive meal. Despite the obvious importance of this process, very little is known on the neural basis of taste discrimination learning. In other sensory modalities, this form of learning can be mediated by either sharpening of sensory representations, or enhanced ability of "decision-making" circuits to interpret sensory information. Given the dual role of the gustatory insular cortex (GC) in encoding both sensory and decision-related variables, this region represents an ideal site for investigating how neural activity changes as animals learn a novel taste discrimination. Here we present results from experiments relying on two photon calcium imaging of GC neural activity in mice performing a taste-guided mixture discrimination task. The task allows for recording of neural activity before and after learning induced by training mice to discriminate increasingly similar pairs of taste mixtures. Single neuron and population analyses show a time-varying pattern of activity, with early sensory responses emerging after taste delivery and binary, choice encoding responses emerging later in the delay before a decision is made. Our results demonstrate that while both sensory and decision-related information is encoded by GC in the context of a taste mixture discrimination task, learning and improved performance are associated with a specific enhancement of decision-related responses.
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15
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Kimura R. Flexible information representation to stabilize sensory perception despite minor external input variations. Neurosci Res 2023; 195:1-8. [PMID: 37236268 DOI: 10.1016/j.neures.2023.05.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Revised: 05/14/2023] [Accepted: 05/18/2023] [Indexed: 05/28/2023]
Abstract
Sensory information about the environment constantly changes or varies depending on circumstances. However, once we repeatedly experience objects, our brain can perceive and recognize them as identical, even if they are slightly altered or include some diversity. We can stably perceive things without interference from minor external changes or variety. Our recent study focusing on visual perception showed that repeatedly viewing the same oriented grating stimuli enables information representation for low-contrast (or weak-intensity) orientations in the primary visual cortex. We observed low contrast-preferring neurons, whose firing rates increased by reducing the luminance contrast. The number of such neurons increased after the experience, and the neuronal population, including such neurons, can represent even low-contrast orientations. This study indicated that experience leads to flexible information representations that continuously respond to inputs of various strengths at the neuronal population level in the primary sensory cortex. In this perspective article, in addition to the above mechanism, I would discuss alternative mechanisms for perceptual stabilization. The primary sensory cortex represents external information faithfully without alterations, as well as in a state distorted by experience. Both sensory representations may cooperatively and dynamically affect hierarchical downstream, resulting in stable perception.
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Affiliation(s)
- Rie Kimura
- International Research Center for Neurointelligence, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan.
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16
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Dai J, Sun QQ. Learning induced neuronal identity switch in the superficial layers of the primary somatosensory cortex. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.08.30.555603. [PMID: 37693620 PMCID: PMC10491147 DOI: 10.1101/2023.08.30.555603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/12/2023]
Abstract
During learning, multi-dimensional inputs are integrated within the sensory cortices. However, the strategies by which the sensory cortex employs to achieve learning remains poorly understood. We studied the sensory cortical neuronal coding of trace eyeblink conditioning (TEC) in head-fixed, freely running mice, where whisker deflection was used as a conditioned stimulus (CS) and an air puff to the cornea delivered after an interval was used as unconditioned stimulus (US). After training, mice learned the task with a set of stereotypical behavioral changes, most prominent ones include prolonged closure of eyelids, and increased reverse running between CS and US onset. The local blockade of the primary somatosensory cortex (S1) activities with muscimol abolished the behavior learning suggesting that S1 is required for the TEC. In naive animals, based on the response properties to the CS and US, identities of the small proportion (~20%) of responsive primary neurons (PNs) were divided into two subtypes: CR (i.e. CS-responsive) and UR neurons (i.e. US-responsive). After animals learned the task, identity of CR and UR neurons changed: while the CR neurons are less responsive to CS, UR neurons gain responsiveness to CS, a new phenomenon we defined as 'learning induced neuronal identity switch (LINIS)'. To explore the potential mechanisms underlying LINIS, we found that systemic and local (i.e. in S1) administration of the nicotinic receptor antagonist during TEC training blocked the LINIS, and concomitantly disrupted the behavior learning. Additionally, we monitored responses of two types of cortical interneurons (INs) and observed that the responses of the somatostatin-expressing (SST), but not parvalbumin-expressing (PV) INs are negatively correlated with the learning performance, suggesting that SST-INs contribute to the LINIS. Thus, we conclude that L2/3 PNs in S1 encode perceptual learning by LINIS like mechanisms, and cholinergic pathways and cortical SST interneurons are involved in the formation of LINIS.
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Affiliation(s)
- Jiaman Dai
- Department of Zoology and Physiology, University of Wyoming, Laramie, WY82071, USA
- Wyoming Sensory Biology Center of Biomedical Research Excellence, University of Wyoming, Laramie, WY82071, USA
| | - Qian-Quan Sun
- Department of Zoology and Physiology, University of Wyoming, Laramie, WY82071, USA
- Wyoming Sensory Biology Center of Biomedical Research Excellence, University of Wyoming, Laramie, WY82071, USA
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17
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Kumar S, Sharma AK, Tran A, Liu M, Leifer AM. Inhibitory feedback from the motor circuit gates mechanosensory processing in Caenorhabditis elegans. PLoS Biol 2023; 21:e3002280. [PMID: 37733772 PMCID: PMC10617738 DOI: 10.1371/journal.pbio.3002280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Revised: 10/31/2023] [Accepted: 07/27/2023] [Indexed: 09/23/2023] Open
Abstract
Animals must integrate sensory cues with their current behavioral context to generate a suitable response. How this integration occurs is poorly understood. Previously, we developed high-throughput methods to probe neural activity in populations of Caenorhabditis elegans and discovered that the animal's mechanosensory processing is rapidly modulated by the animal's locomotion. Specifically, we found that when the worm turns it suppresses its mechanosensory-evoked reversal response. Here, we report that C. elegans use inhibitory feedback from turning-associated neurons to provide this rapid modulation of mechanosensory processing. By performing high-throughput optogenetic perturbations triggered on behavior, we show that turning-associated neurons SAA, RIV, and/or SMB suppress mechanosensory-evoked reversals during turns. We find that activation of the gentle-touch mechanosensory neurons or of any of the interneurons AIZ, RIM, AIB, and AVE during a turn is less likely to evoke a reversal than activation during forward movement. Inhibiting neurons SAA, RIV, and SMB during a turn restores the likelihood with which mechanosensory activation evokes reversals. Separately, activation of premotor interneuron AVA evokes reversals regardless of whether the animal is turning or moving forward. We therefore propose that inhibitory signals from SAA, RIV, and/or SMB gate mechanosensory signals upstream of neuron AVA. We conclude that C. elegans rely on inhibitory feedback from the motor circuit to modulate its response to sensory stimuli on fast timescales. This need for motor signals in sensory processing may explain the ubiquity in many organisms of motor-related neural activity patterns seen across the brain, including in sensory processing areas.
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Affiliation(s)
- Sandeep Kumar
- Princeton Neuroscience Institute, Princeton University, Princeton, New Jersey, United States of America
| | - Anuj K. Sharma
- Department of Physics, Princeton University, Princeton, New Jersey, United States of America
| | - Andrew Tran
- Princeton Neuroscience Institute, Princeton University, Princeton, New Jersey, United States of America
| | - Mochi Liu
- Department of Physics, Princeton University, Princeton, New Jersey, United States of America
| | - Andrew M. Leifer
- Princeton Neuroscience Institute, Princeton University, Princeton, New Jersey, United States of America
- Department of Physics, Princeton University, Princeton, New Jersey, United States of America
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18
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Bounds HA, Sadahiro M, Hendricks WD, Gajowa M, Gopakumar K, Quintana D, Tasic B, Daigle TL, Zeng H, Oldenburg IA, Adesnik H. All-optical recreation of naturalistic neural activity with a multifunctional transgenic reporter mouse. Cell Rep 2023; 42:112909. [PMID: 37542722 PMCID: PMC10755854 DOI: 10.1016/j.celrep.2023.112909] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2022] [Revised: 06/23/2023] [Accepted: 07/14/2023] [Indexed: 08/07/2023] Open
Abstract
Determining which features of the neural code drive behavior requires the ability to simultaneously read out and write in neural activity patterns with high precision across many neurons. All-optical systems that combine two-photon calcium imaging and targeted photostimulation enable the activation of specific, functionally defined groups of neurons. However, these techniques are unable to test how patterns of activity across a population contribute to computation because of an inability to both read and write cell-specific firing rates. To overcome this challenge, we make two advances: first, we introduce a genetic line of mice for Cre-dependent co-expression of a calcium indicator and a potent soma-targeted microbial opsin. Second, using this line, we develop a method for read-out and write-in of precise population vectors of neural activity by calibrating the photostimulation to each cell. These advances offer a powerful and convenient platform for investigating the neural codes of computation and behavior.
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Affiliation(s)
- Hayley A Bounds
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA; The Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
| | - Masato Sadahiro
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA
| | - William D Hendricks
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA
| | - Marta Gajowa
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA
| | - Karthika Gopakumar
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA
| | - Daniel Quintana
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA
| | | | | | - Hongkui Zeng
- Allen Institute for Brain Science, Seattle, WA, USA
| | - Ian Antón Oldenburg
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.
| | - Hillel Adesnik
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA; The Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA.
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19
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Mo C, McKinnon C, Sherman SM. A transthalamic pathway crucial for perception. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.03.30.533323. [PMID: 37034798 PMCID: PMC10081228 DOI: 10.1101/2023.03.30.533323] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Perception arises from activity between cortical areas, first primary cortex and then higher order cortices. This communication is served in part by transthalamic (cortico-thalamo-cortical) pathways, which ubiquitously parallel direct corticocortical pathways, but their role in sensory processing has largely remained unexplored. Here, we show that the transthalamic pathway linking somatosensory cortices propagates task-relevant information required for correct sensory decisions. Using optogenetics, we specifically inhibited the pathway at its synapse in higher order somatosensory thalamus of mice performing a texture-based discrimination task. We concurrently monitored the cellular effects of inhibition in primary or secondary cortex using two-photon calcium imaging. Inhibition severely impaired performance despite intact direct corticocortical projections, thus challenging the purely corticocentric map of perception. Interestingly, the inhibition did not reduce overall cell responsiveness to texture stimulation in somatosensory cortex, but rather disrupted the texture selectivity of cells, a discriminability that develops over task learning. This discriminability was more disrupted in the secondary than primary somatosensory cortex, emphasizing the feedforward influence of the transthalamic route. Transthalamic pathways thus appear critical in delivering performance-relevant information to higher order cortex and are critical hierarchical pathways in perceptual decision-making.
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20
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Inácio AR, Lam KC, Zhao Y, Pereira F, Gerfen CR, Lee S. Distinct brain-wide presynaptic networks underlie the functional identity of individual cortical neurons. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.05.25.542329. [PMID: 37425800 PMCID: PMC10327181 DOI: 10.1101/2023.05.25.542329] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/11/2023]
Abstract
Neuronal connections provide the scaffolding for neuronal function. Revealing the connectivity of functionally identified individual neurons is necessary to understand how activity patterns emerge and support behavior. Yet, the brain-wide presynaptic wiring rules that lay the foundation for the functional selectivity of individual neurons remain largely unexplored. Cortical neurons, even in primary sensory cortex, are heterogeneous in their selectivity, not only to sensory stimuli but also to multiple aspects of behavior. Here, to investigate presynaptic connectivity rules underlying the selectivity of pyramidal neurons to behavioral state 1-12 in primary somatosensory cortex (S1), we used two-photon calcium imaging, neuropharmacology, single-cell based monosynaptic input tracing, and optogenetics. We show that behavioral state-dependent neuronal activity patterns are stable over time. These are not determined by neuromodulatory inputs but are instead driven by glutamatergic inputs. Analysis of brain-wide presynaptic networks of individual neurons with distinct behavioral state-dependent activity profiles revealed characteristic patterns of anatomical input. While both behavioral state-related and unrelated neurons had a similar pattern of local inputs within S1, their long-range glutamatergic inputs differed. Individual cortical neurons, irrespective of their functional properties, received converging inputs from the main S1-projecting areas. Yet, neurons that tracked behavioral state received a smaller proportion of motor cortical inputs and a larger proportion of thalamic inputs. Optogenetic suppression of thalamic inputs reduced behavioral state-dependent activity in S1, but this activity was not externally driven. Our results revealed distinct long-range glutamatergic inputs as a substrate for preconfigured network dynamics associated with behavioral state.
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21
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Abdeladim L, Shin H, Jagadisan UK, Ogando MB, Adesnik H. Probing inter-areal computations with a cellular resolution two-photon holographic mesoscope. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.03.02.530875. [PMID: 37090604 PMCID: PMC10120651 DOI: 10.1101/2023.03.02.530875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Brain computation depends on intricately connected yet highly distributed neural networks. Due to the absence of the requisite technologies, causally testing fundamental hypotheses on the nature of inter-areal processing have remained largely out-of-each. Here we developed the first two photon holographic mesoscope, a system capable of simultaneously reading and writing neural activity patterns with single cell resolution across large regions of the brain. We demonstrate the precise photo-activation of spatial and temporal sequences of neurons in one brain area while reading out the downstream effect in several other regions. Investigators can use this new platform to understand feed-forward and feed-back processing in distributed neural circuits with single cell precision for the first time.
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22
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Diamond ME, Toso A. Tactile cognition in rodents. Neurosci Biobehav Rev 2023; 149:105161. [PMID: 37028580 DOI: 10.1016/j.neubiorev.2023.105161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2023] [Revised: 03/23/2023] [Accepted: 04/03/2023] [Indexed: 04/08/2023]
Abstract
Since the discovery 50 years ago of the precisely ordered representation of the whiskers in somatosensory cortex, the rodent tactile sensory system has been a fertile ground for the study of sensory processing. With the growing sophistication of touch-based behavioral paradigms, together with advances in neurophysiological methodology, a new approach is emerging. By posing increasingly complex perceptual and memory problems, in many cases analogous to human psychophysical tasks, investigators now explore the operations underlying rodent problem solving. We define the neural basis of tactile cognition as the transformation from a stage in which neuronal activity encodes elemental features, local in space and in time, to a stage in which neuronal activity is an explicit representation of the behavioral operations underlying the current task. Selecting a set of whisker-based behavioral tasks, we show that rodents achieve high level performance through the workings of neuronal circuits that are accessible, decodable, and manipulatable. As a means towards exploring tactile cognition, this review presents leading psychophysical paradigms and, where known, their neural correlates.
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Affiliation(s)
- Mathew E Diamond
- Cognitive Neuroscience, International School for Advanced Studies, Via Bonomea 265, 34136 Trieste, Italy.
| | - Alessandro Toso
- Cognitive Neuroscience, International School for Advanced Studies, Via Bonomea 265, 34136 Trieste, Italy
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23
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Koren V, Bondanelli G, Panzeri S. Computational methods to study information processing in neural circuits. Comput Struct Biotechnol J 2023; 21:910-922. [PMID: 36698970 PMCID: PMC9851868 DOI: 10.1016/j.csbj.2023.01.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2022] [Revised: 01/09/2023] [Accepted: 01/09/2023] [Indexed: 01/13/2023] Open
Abstract
The brain is an information processing machine and thus naturally lends itself to be studied using computational tools based on the principles of information theory. For this reason, computational methods based on or inspired by information theory have been a cornerstone of practical and conceptual progress in neuroscience. In this Review, we address how concepts and computational tools related to information theory are spurring the development of principled theories of information processing in neural circuits and the development of influential mathematical methods for the analyses of neural population recordings. We review how these computational approaches reveal mechanisms of essential functions performed by neural circuits. These functions include efficiently encoding sensory information and facilitating the transmission of information to downstream brain areas to inform and guide behavior. Finally, we discuss how further progress and insights can be achieved, in particular by studying how competing requirements of neural encoding and readout may be optimally traded off to optimize neural information processing.
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Affiliation(s)
- Veronika Koren
- Department of Excellence for Neural Information Processing, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf (UKE), Falkenried 94, Hamburg 20251, Germany
| | | | - Stefano Panzeri
- Department of Excellence for Neural Information Processing, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf (UKE), Falkenried 94, Hamburg 20251, Germany,Istituto Italiano di Tecnologia, Via Melen 83, Genova 16152, Italy,Corresponding author at: Department of Excellence for Neural Information Processing, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf (UKE), Falkenried 94, Hamburg 20251, Germany.
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